HEADER TRANSFERASE 20-FEB-13 4JC0 TITLE CRYSTAL STRUCTURE OF THERMOTOGA MARITIMA HOLO RIMO IN COMPLEX WITH TITLE 2 PENTASULFIDE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET VR77 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOMAL PROTEIN S12 METHYLTHIOTRANSFERASE RIMO; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: S12 MTTASE, S12 METHYLTHIOTRANSFERASE, RIBOSOME MATURATION COMPND 5 FACTOR RIMO; COMPND 6 EC: 2.-.-.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 STRAIN: ATCC 43589; SOURCE 5 GENE: RIMO, TM1862, TM_1862; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, NORTHEAST STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, NESG, THREE-DOMAINED ENZYME, ALPHA-BETA N-TERMINAL KEYWDS 3 DOMAIN, SEMI-TIM BARREL RADICAL-SAM DOMAIN, BETA BARREL C-TERMINAL KEYWDS 4 TRAM DOMAIN, RIBOSOMAL PROTEIN S12, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR F.FOROUHAR,M.HUSSAIN,J.SEETHARAMAN,Y.FANG,C.X.CHEN,K.CUNNINGHAM, AUTHOR 2 K.CONOVER,L.-C.MA,R.XIAO,T.B.ACTON,G.T.MONTELIONE,L.TONG,J.F.HUNT, AUTHOR 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 3 20-SEP-23 4JC0 1 REMARK SEQADV LINK REVDAT 2 22-MAY-13 4JC0 1 JRNL REVDAT 1 10-APR-13 4JC0 0 JRNL AUTH F.FOROUHAR,S.ARRAGAIN,M.ATTA,S.GAMBARELLI,J.M.MOUESCA, JRNL AUTH 2 M.HUSSAIN,R.XIAO,S.KIEFFER-JAQUINOD,J.SEETHARAMAN,T.B.ACTON, JRNL AUTH 3 G.T.MONTELIONE,E.MULLIEZ,J.F.HUNT,M.FONTECAVE JRNL TITL TWO FE-S CLUSTERS CATALYZE SULFUR INSERTION BY RADICAL-SAM JRNL TITL 2 METHYLTHIOTRANSFERASES. JRNL REF NAT.CHEM.BIOL. V. 9 333 2013 JRNL REFN ISSN 1552-4450 JRNL PMID 23542644 JRNL DOI 10.1038/NCHEMBIO.1229 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.3 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 91392.460 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 83.1 REMARK 3 NUMBER OF REFLECTIONS : 11747 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.296 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1210 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.51 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 70.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1455 REMARK 3 BIN R VALUE (WORKING SET) : 0.3750 REMARK 3 BIN FREE R VALUE : 0.4410 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 175 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.033 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6808 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 85.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 101.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -16.78000 REMARK 3 B22 (A**2) : -32.01000 REMARK 3 B33 (A**2) : 48.79000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.49 REMARK 3 ESD FROM SIGMAA (A) : 0.76 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.58 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.87 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.690 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.25 REMARK 3 BSOL : 19.30 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JC0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000077855. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14135 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 41.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.13600 REMARK 200 R SYM (I) : 0.09100 REMARK 200 FOR THE DATA SET : 13.7100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.40700 REMARK 200 R SYM FOR SHELL (I) : 0.36800 REMARK 200 FOR SHELL : 2.340 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2QGQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION: 10 MM TRIS-HCL PH REMARK 280 7.5, 100 MM SODIUM CHLORIDE, 20 MG/ML, 5 DTT, 10 EQUIVALENTS REMARK 280 FECL3 AND NA2S. RESERVOIR SOLUTION: 100 MM CAPS PH 10.0, 40% PEG REMARK 280 4000, 100 MM SODIUM THIOSULFATE, MICROBATCH UNDER OIL, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.86050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 86.39750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.47400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 86.39750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.86050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.47400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 113 REMARK 465 GLY A 114 REMARK 465 GLN A 121 REMARK 465 PRO A 122 REMARK 465 GLU A 123 REMARK 465 THR A 124 REMARK 465 VAL A 125 REMARK 465 TYR A 126 REMARK 465 HIS A 434 REMARK 465 HIS A 435 REMARK 465 HIS A 436 REMARK 465 HIS A 437 REMARK 465 HIS A 438 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 ASN B 113 REMARK 465 GLY B 114 REMARK 465 GLN B 121 REMARK 465 PRO B 122 REMARK 465 GLU B 123 REMARK 465 THR B 124 REMARK 465 VAL B 125 REMARK 465 TYR B 126 REMARK 465 GLU B 432 REMARK 465 HIS B 433 REMARK 465 HIS B 434 REMARK 465 HIS B 435 REMARK 465 HIS B 436 REMARK 465 HIS B 437 REMARK 465 HIS B 438 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 3 145.22 -170.74 REMARK 500 LEU A 24 21.89 -78.68 REMARK 500 GLU A 26 -67.73 -103.96 REMARK 500 HIS A 29 -29.20 63.39 REMARK 500 PHE A 33 30.55 -66.43 REMARK 500 VAL A 35 29.07 -77.64 REMARK 500 LYS A 36 -6.55 65.79 REMARK 500 ILE A 49 7.90 -164.29 REMARK 500 GLU A 50 -26.89 66.16 REMARK 500 ALA A 66 51.36 -113.07 REMARK 500 ASP A 68 48.89 -77.60 REMARK 500 TYR A 84 41.78 -144.61 REMARK 500 ILE A 92 70.71 -118.15 REMARK 500 ALA A 102 169.81 70.62 REMARK 500 ASP A 103 -49.78 -138.16 REMARK 500 PRO A 104 33.14 -69.75 REMARK 500 ASN A 109 -49.73 -142.51 REMARK 500 ALA A 110 13.00 -67.19 REMARK 500 VAL A 118 65.30 -167.85 REMARK 500 PRO A 119 -75.57 -62.27 REMARK 500 SER A 145 143.22 -174.26 REMARK 500 CYS A 148 125.17 179.60 REMARK 500 PRO A 158 -6.68 -48.45 REMARK 500 SER A 159 28.64 -154.93 REMARK 500 ALA A 191 -175.55 168.31 REMARK 500 ARG A 203 28.78 41.99 REMARK 500 LYS A 249 57.46 -66.11 REMARK 500 GLN A 256 -34.38 68.64 REMARK 500 PHE A 286 84.94 -165.82 REMARK 500 GLN A 318 74.91 71.48 REMARK 500 ASP A 329 96.22 -61.10 REMARK 500 GLU A 340 90.43 52.25 REMARK 500 LYS A 341 -134.88 -70.96 REMARK 500 GLU A 382 63.56 -107.42 REMARK 500 GLU A 396 63.19 30.15 REMARK 500 VAL A 397 -39.50 -159.00 REMARK 500 ASP A 398 -109.67 -99.88 REMARK 500 ASP A 421 146.89 136.26 REMARK 500 LEU A 431 97.16 46.83 REMARK 500 CYS B 10 170.32 178.29 REMARK 500 LEU B 24 23.40 -76.53 REMARK 500 GLU B 26 -68.08 -102.15 REMARK 500 HIS B 29 -29.37 65.33 REMARK 500 PHE B 33 30.83 -65.76 REMARK 500 ASP B 34 29.28 49.72 REMARK 500 VAL B 35 27.87 -77.68 REMARK 500 LYS B 36 -8.55 67.93 REMARK 500 ASP B 37 38.28 -99.05 REMARK 500 ILE B 49 8.11 -162.91 REMARK 500 GLU B 50 -27.57 67.52 REMARK 500 REMARK 500 THIS ENTRY HAS 82 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FS5 A 501 FE7 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 10 SG REMARK 620 2 FS5 A 501 S8 127.2 REMARK 620 3 FS5 A 501 S6 102.1 105.6 REMARK 620 4 FS5 A 501 S7 113.7 101.8 104.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FS5 A 501 FE5 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 46 SG REMARK 620 2 FS5 A 501 S6 113.0 REMARK 620 3 FS5 A 501 S7 124.8 104.0 REMARK 620 4 FS5 A 501 S5 109.8 102.1 100.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FS5 A 501 FE6 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 79 SG REMARK 620 2 FS5 A 501 S8 119.2 REMARK 620 3 FS5 A 501 S6 125.8 106.0 REMARK 620 4 FS5 A 501 S5 96.1 101.3 103.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FS5 A 501 FE9 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 148 SG REMARK 620 2 FS5 A 501 S4 127.6 REMARK 620 3 FS5 A 501 S2 103.5 107.5 REMARK 620 4 FS5 A 501 S1 100.1 107.5 109.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FS5 A 501 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 152 SG REMARK 620 2 FS5 A 501 S2 118.4 REMARK 620 3 FS5 A 501 S1 121.8 109.3 REMARK 620 4 FS5 A 501 S3 94.2 107.1 102.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FS5 A 501 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 155 SG REMARK 620 2 FS5 A 501 S4 105.2 REMARK 620 3 FS5 A 501 S2 127.9 106.7 REMARK 620 4 FS5 A 501 S3 101.0 107.6 107.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FS5 B 501 FE7 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 10 SG REMARK 620 2 FS5 B 501 S8 127.7 REMARK 620 3 FS5 B 501 S6 113.3 105.6 REMARK 620 4 FS5 B 501 S7 98.7 103.0 105.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FS5 B 501 FE5 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 46 SG REMARK 620 2 FS5 B 501 S6 109.2 REMARK 620 3 FS5 B 501 S7 137.1 105.4 REMARK 620 4 FS5 B 501 S5 98.3 100.4 99.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FS5 B 501 FE6 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 79 SG REMARK 620 2 FS5 B 501 S8 106.3 REMARK 620 3 FS5 B 501 S6 126.3 106.4 REMARK 620 4 FS5 B 501 S5 112.4 102.3 100.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FS5 B 501 FE9 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 148 SG REMARK 620 2 FS5 B 501 S4 119.6 REMARK 620 3 FS5 B 501 S2 119.3 106.2 REMARK 620 4 FS5 B 501 S1 95.7 105.7 108.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FS5 B 501 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 152 SG REMARK 620 2 FS5 B 501 S2 122.0 REMARK 620 3 FS5 B 501 S1 123.5 109.0 REMARK 620 4 FS5 B 501 S3 86.5 107.5 100.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FS5 B 501 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 155 SG REMARK 620 2 FS5 B 501 S4 95.3 REMARK 620 3 FS5 B 501 S2 124.1 105.9 REMARK 620 4 FS5 B 501 S3 114.2 106.9 108.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FS5 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FS5 B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NESG-VR77 RELATED DB: TARGETTRACK DBREF 4JC0 A 1 430 UNP Q9X2H6 RIMO_THEMA 1 430 DBREF 4JC0 B 1 430 UNP Q9X2H6 RIMO_THEMA 1 430 SEQADV 4JC0 LEU A 431 UNP Q9X2H6 EXPRESSION TAG SEQADV 4JC0 GLU A 432 UNP Q9X2H6 EXPRESSION TAG SEQADV 4JC0 HIS A 433 UNP Q9X2H6 EXPRESSION TAG SEQADV 4JC0 HIS A 434 UNP Q9X2H6 EXPRESSION TAG SEQADV 4JC0 HIS A 435 UNP Q9X2H6 EXPRESSION TAG SEQADV 4JC0 HIS A 436 UNP Q9X2H6 EXPRESSION TAG SEQADV 4JC0 HIS A 437 UNP Q9X2H6 EXPRESSION TAG SEQADV 4JC0 HIS A 438 UNP Q9X2H6 EXPRESSION TAG SEQADV 4JC0 LEU B 431 UNP Q9X2H6 EXPRESSION TAG SEQADV 4JC0 GLU B 432 UNP Q9X2H6 EXPRESSION TAG SEQADV 4JC0 HIS B 433 UNP Q9X2H6 EXPRESSION TAG SEQADV 4JC0 HIS B 434 UNP Q9X2H6 EXPRESSION TAG SEQADV 4JC0 HIS B 435 UNP Q9X2H6 EXPRESSION TAG SEQADV 4JC0 HIS B 436 UNP Q9X2H6 EXPRESSION TAG SEQADV 4JC0 HIS B 437 UNP Q9X2H6 EXPRESSION TAG SEQADV 4JC0 HIS B 438 UNP Q9X2H6 EXPRESSION TAG SEQRES 1 A 438 MET ARG VAL GLY ILE LYS VAL LEU GLY CYS PRO LYS ASN SEQRES 2 A 438 GLU ALA ASP CYS GLU VAL LEU ALA GLY VAL LEU ARG GLU SEQRES 3 A 438 GLY GLY HIS GLU ILE VAL PHE ASP VAL LYS ASP ALA ASP SEQRES 4 A 438 VAL VAL VAL LEU ASP THR CYS ALA PHE ILE GLU ASP ALA SEQRES 5 A 438 LYS ARG GLU SER ILE ASP GLU ILE PHE SER PHE VAL ASP SEQRES 6 A 438 ALA LYS ASP GLN TYR GLY TYR LYS LEU VAL VAL LYS GLY SEQRES 7 A 438 CYS LEU VAL GLN ARG TYR TYR GLU GLU LEU LYS LYS GLU SEQRES 8 A 438 ILE PRO GLU VAL ASP GLN TRP ILE GLY VAL ALA ASP PRO SEQRES 9 A 438 GLU GLU ILE ALA ASN ALA ILE GLU ASN GLY THR ASP LEU SEQRES 10 A 438 VAL PRO ASP GLN PRO GLU THR VAL TYR ARG TYR ARG LYS SEQRES 11 A 438 ARG ILE ASP LEU GLU GLU ARG PRO TYR ALA TYR VAL LYS SEQRES 12 A 438 ILE SER ASP GLY CYS ASP ARG GLY CYS THR PHE CYS SER SEQRES 13 A 438 ILE PRO SER PHE LYS GLY SER LEU ARG SER ARG SER ILE SEQRES 14 A 438 GLU ASP ILE THR ARG GLU VAL GLU ASP LEU LEU LYS GLU SEQRES 15 A 438 GLY LYS LYS GLU ILE ILE LEU VAL ALA GLN ASP THR THR SEQRES 16 A 438 SER TYR GLY ILE ASP LEU TYR ARG LYS GLN ALA LEU PRO SEQRES 17 A 438 ASP LEU LEU ARG ARG LEU ASN SER LEU ASN GLY GLU PHE SEQRES 18 A 438 TRP ILE ARG VAL MET TYR LEU HIS PRO ASP HIS LEU THR SEQRES 19 A 438 GLU GLU ILE ILE SER ALA MET LEU GLU LEU ASP LYS VAL SEQRES 20 A 438 VAL LYS TYR PHE ASP VAL PRO VAL GLN HIS GLY SER ASP SEQRES 21 A 438 LYS ILE LEU LYS LEU MET GLY ARG THR LYS SER SER GLU SEQRES 22 A 438 GLU LEU LYS LYS MET LEU SER SER ILE ARG GLU ARG PHE SEQRES 23 A 438 PRO ASP ALA VAL LEU ARG THR SER ILE ILE VAL GLY PHE SEQRES 24 A 438 PRO GLY GLU THR GLU GLU ASP PHE GLU GLU LEU LYS GLN SEQRES 25 A 438 PHE VAL GLU GLU ILE GLN PHE ASP LYS LEU GLY ALA PHE SEQRES 26 A 438 VAL TYR SER ASP GLU GLU GLY THR VAL ALA PHE ASN LEU SEQRES 27 A 438 LYS GLU LYS VAL ASP PRO GLU MET ALA LYS ARG ARG GLN SEQRES 28 A 438 GLU GLU LEU LEU LEU LEU GLN ALA GLU ILE SER ASN SER SEQRES 29 A 438 ARG LEU ASP ARG PHE VAL GLY LYS LYS LEU LYS PHE LEU SEQRES 30 A 438 VAL GLU GLY LYS GLU GLY LYS PHE LEU VAL GLY ARG THR SEQRES 31 A 438 TRP THR GLU ALA PRO GLU VAL ASP GLY VAL VAL PHE VAL SEQRES 32 A 438 ARG GLY LYS GLY LYS ILE GLY ASP PHE LEU GLU VAL VAL SEQRES 33 A 438 ILE LYS GLU HIS ASP GLU TYR ASP MET TRP GLY SER VAL SEQRES 34 A 438 ILE LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 438 MET ARG VAL GLY ILE LYS VAL LEU GLY CYS PRO LYS ASN SEQRES 2 B 438 GLU ALA ASP CYS GLU VAL LEU ALA GLY VAL LEU ARG GLU SEQRES 3 B 438 GLY GLY HIS GLU ILE VAL PHE ASP VAL LYS ASP ALA ASP SEQRES 4 B 438 VAL VAL VAL LEU ASP THR CYS ALA PHE ILE GLU ASP ALA SEQRES 5 B 438 LYS ARG GLU SER ILE ASP GLU ILE PHE SER PHE VAL ASP SEQRES 6 B 438 ALA LYS ASP GLN TYR GLY TYR LYS LEU VAL VAL LYS GLY SEQRES 7 B 438 CYS LEU VAL GLN ARG TYR TYR GLU GLU LEU LYS LYS GLU SEQRES 8 B 438 ILE PRO GLU VAL ASP GLN TRP ILE GLY VAL ALA ASP PRO SEQRES 9 B 438 GLU GLU ILE ALA ASN ALA ILE GLU ASN GLY THR ASP LEU SEQRES 10 B 438 VAL PRO ASP GLN PRO GLU THR VAL TYR ARG TYR ARG LYS SEQRES 11 B 438 ARG ILE ASP LEU GLU GLU ARG PRO TYR ALA TYR VAL LYS SEQRES 12 B 438 ILE SER ASP GLY CYS ASP ARG GLY CYS THR PHE CYS SER SEQRES 13 B 438 ILE PRO SER PHE LYS GLY SER LEU ARG SER ARG SER ILE SEQRES 14 B 438 GLU ASP ILE THR ARG GLU VAL GLU ASP LEU LEU LYS GLU SEQRES 15 B 438 GLY LYS LYS GLU ILE ILE LEU VAL ALA GLN ASP THR THR SEQRES 16 B 438 SER TYR GLY ILE ASP LEU TYR ARG LYS GLN ALA LEU PRO SEQRES 17 B 438 ASP LEU LEU ARG ARG LEU ASN SER LEU ASN GLY GLU PHE SEQRES 18 B 438 TRP ILE ARG VAL MET TYR LEU HIS PRO ASP HIS LEU THR SEQRES 19 B 438 GLU GLU ILE ILE SER ALA MET LEU GLU LEU ASP LYS VAL SEQRES 20 B 438 VAL LYS TYR PHE ASP VAL PRO VAL GLN HIS GLY SER ASP SEQRES 21 B 438 LYS ILE LEU LYS LEU MET GLY ARG THR LYS SER SER GLU SEQRES 22 B 438 GLU LEU LYS LYS MET LEU SER SER ILE ARG GLU ARG PHE SEQRES 23 B 438 PRO ASP ALA VAL LEU ARG THR SER ILE ILE VAL GLY PHE SEQRES 24 B 438 PRO GLY GLU THR GLU GLU ASP PHE GLU GLU LEU LYS GLN SEQRES 25 B 438 PHE VAL GLU GLU ILE GLN PHE ASP LYS LEU GLY ALA PHE SEQRES 26 B 438 VAL TYR SER ASP GLU GLU GLY THR VAL ALA PHE ASN LEU SEQRES 27 B 438 LYS GLU LYS VAL ASP PRO GLU MET ALA LYS ARG ARG GLN SEQRES 28 B 438 GLU GLU LEU LEU LEU LEU GLN ALA GLU ILE SER ASN SER SEQRES 29 B 438 ARG LEU ASP ARG PHE VAL GLY LYS LYS LEU LYS PHE LEU SEQRES 30 B 438 VAL GLU GLY LYS GLU GLY LYS PHE LEU VAL GLY ARG THR SEQRES 31 B 438 TRP THR GLU ALA PRO GLU VAL ASP GLY VAL VAL PHE VAL SEQRES 32 B 438 ARG GLY LYS GLY LYS ILE GLY ASP PHE LEU GLU VAL VAL SEQRES 33 B 438 ILE LYS GLU HIS ASP GLU TYR ASP MET TRP GLY SER VAL SEQRES 34 B 438 ILE LEU GLU HIS HIS HIS HIS HIS HIS HET FS5 A 501 21 HET FS5 B 501 21 HETNAM FS5 IRON/SULFUR PENTA-SULFIDE CONNECTED CLUSTERS HETSYN FS5 PENTASULFIDE-LINKED IRON CUBANES FORMUL 3 FS5 2(FE8 S13) HELIX 1 1 CYS A 10 LEU A 24 1 15 HELIX 2 2 ASP A 51 SER A 56 1 6 HELIX 3 3 SER A 56 ASP A 65 1 10 HELIX 4 4 CYS A 79 ARG A 83 1 5 HELIX 5 5 TYR A 84 ILE A 92 1 9 HELIX 6 6 SER A 156 PHE A 160 5 5 HELIX 7 7 SER A 168 GLU A 182 1 15 HELIX 8 8 ASP A 193 TYR A 197 5 5 HELIX 9 9 ALA A 206 ASN A 215 1 10 HELIX 10 10 HIS A 229 LEU A 233 5 5 HELIX 11 11 THR A 234 LEU A 244 1 11 HELIX 12 12 SER A 259 GLY A 267 1 9 HELIX 13 13 SER A 271 PHE A 286 1 16 HELIX 14 14 THR A 303 GLN A 318 1 16 HELIX 15 15 ASP A 343 ARG A 368 1 26 HELIX 16 16 GLU B 14 LEU B 24 1 11 HELIX 17 17 ASP B 51 SER B 56 1 6 HELIX 18 18 SER B 56 ASP B 65 1 10 HELIX 19 19 CYS B 79 ARG B 83 1 5 HELIX 20 20 TYR B 84 ILE B 92 1 9 HELIX 21 21 SER B 156 PHE B 160 5 5 HELIX 22 22 SER B 168 GLU B 182 1 15 HELIX 23 23 ASP B 193 TYR B 197 5 5 HELIX 24 24 ALA B 206 ASN B 215 1 10 HELIX 25 25 HIS B 229 LEU B 233 5 5 HELIX 26 26 THR B 234 LEU B 244 1 11 HELIX 27 27 SER B 259 GLY B 267 1 9 HELIX 28 28 SER B 271 PHE B 286 1 16 HELIX 29 29 THR B 303 GLN B 318 1 16 HELIX 30 30 ASP B 343 ARG B 368 1 26 SHEET 1 A 4 VAL A 3 LYS A 6 0 SHEET 2 A 4 VAL A 40 THR A 45 1 O VAL A 42 N LYS A 6 SHEET 3 A 4 LYS A 73 GLY A 78 1 O VAL A 75 N LEU A 43 SHEET 4 A 4 GLN A 97 ILE A 99 1 O ILE A 99 N VAL A 76 SHEET 1 B 4 ARG A 165 SER A 166 0 SHEET 2 B 4 TYR A 139 ASP A 146 -1 N ASP A 146 O ARG A 165 SHEET 3 B 4 GLU A 186 ALA A 191 1 O ILE A 188 N VAL A 142 SHEET 4 B 4 TRP A 222 VAL A 225 1 O TRP A 222 N ILE A 187 SHEET 1 C 3 TYR A 250 ASP A 252 0 SHEET 2 C 3 VAL A 290 VAL A 297 1 O VAL A 290 N PHE A 251 SHEET 3 C 3 LYS A 321 VAL A 326 1 O GLY A 323 N THR A 293 SHEET 1 D 6 LYS A 373 GLU A 382 0 SHEET 2 D 6 PHE A 385 THR A 390 -1 O VAL A 387 N GLU A 379 SHEET 3 D 6 VAL A 401 ARG A 404 -1 O VAL A 401 N GLY A 388 SHEET 4 D 6 ASP A 424 VAL A 429 1 O GLY A 427 N PHE A 402 SHEET 5 D 6 PHE A 412 ASP A 421 -1 N LYS A 418 O TRP A 426 SHEET 6 D 6 LYS A 373 GLU A 382 -1 N PHE A 376 O LEU A 413 SHEET 1 E 4 GLY B 4 LYS B 6 0 SHEET 2 E 4 VAL B 40 THR B 45 1 O VAL B 42 N LYS B 6 SHEET 3 E 4 LYS B 73 GLY B 78 1 O VAL B 75 N LEU B 43 SHEET 4 E 4 GLN B 97 ILE B 99 1 O ILE B 99 N VAL B 76 SHEET 1 F 4 ARG B 165 SER B 166 0 SHEET 2 F 4 TYR B 139 ASP B 146 -1 N ASP B 146 O ARG B 165 SHEET 3 F 4 GLU B 186 ALA B 191 1 O ILE B 188 N VAL B 142 SHEET 4 F 4 TRP B 222 VAL B 225 1 O ARG B 224 N LEU B 189 SHEET 1 G 3 TYR B 250 ASP B 252 0 SHEET 2 G 3 VAL B 290 VAL B 297 1 O VAL B 290 N PHE B 251 SHEET 3 G 3 LYS B 321 VAL B 326 1 O PHE B 325 N VAL B 297 SHEET 1 H 6 LYS B 373 GLU B 382 0 SHEET 2 H 6 PHE B 385 THR B 390 -1 O VAL B 387 N GLU B 379 SHEET 3 H 6 VAL B 401 ARG B 404 -1 O VAL B 401 N GLY B 388 SHEET 4 H 6 ASP B 424 VAL B 429 1 O GLY B 427 N PHE B 402 SHEET 5 H 6 PHE B 412 ASP B 421 -1 N LYS B 418 O TRP B 426 SHEET 6 H 6 LYS B 373 GLU B 382 -1 N PHE B 376 O LEU B 413 LINK SG CYS A 10 FE7 FS5 A 501 1555 1555 2.19 LINK SG CYS A 46 FE5 FS5 A 501 1555 1555 2.22 LINK SG CYS A 79 FE6 FS5 A 501 1555 1555 2.28 LINK SG CYS A 148 FE9 FS5 A 501 1555 1555 2.18 LINK SG CYS A 152 FE1 FS5 A 501 1555 1555 2.18 LINK SG CYS A 155 FE2 FS5 A 501 1555 1555 2.23 LINK SG CYS B 10 FE7 FS5 B 501 1555 1555 2.16 LINK SG CYS B 46 FE5 FS5 B 501 1555 1555 2.23 LINK SG CYS B 79 FE6 FS5 B 501 1555 1555 2.33 LINK SG CYS B 148 FE9 FS5 B 501 1555 1555 2.20 LINK SG CYS B 152 FE1 FS5 B 501 1555 1555 2.19 LINK SG CYS B 155 FE2 FS5 B 501 1555 1555 2.20 SITE 1 AC1 14 GLY A 9 CYS A 10 LYS A 12 ASN A 13 SITE 2 AC1 14 CYS A 46 ALA A 47 PHE A 48 CYS A 79 SITE 3 AC1 14 CYS A 148 ARG A 150 CYS A 152 CYS A 155 SITE 4 AC1 14 ILE A 157 GLN A 192 SITE 1 AC2 17 GLY B 9 CYS B 10 LYS B 12 ASN B 13 SITE 2 AC2 17 CYS B 46 ALA B 47 PHE B 48 CYS B 79 SITE 3 AC2 17 CYS B 148 ARG B 150 CYS B 152 PHE B 154 SITE 4 AC2 17 CYS B 155 ILE B 157 LYS B 161 GLN B 192 SITE 5 AC2 17 HIS B 229 CRYST1 59.721 86.948 172.795 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016745 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011501 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005787 0.00000