HEADER PROTEIN BINDING 21-FEB-13 4JCJ TITLE CRYSTAL STRUCTURE OF ISL1 LIM DOMAINS WITH LDB1 LIM-INTERACTION DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: INSULIN GENE ENHANCER PROTEIN ISL-1,LIM DOMAIN-BINDING COMPND 3 PROTEIN 1; COMPND 4 CHAIN: A, B, C; COMPND 5 FRAGMENT: UNP RESIDUES 11-138 AND UNP RESIDUES 300-330; COMPND 6 SYNONYM: ISLET-1,LDB-1,CARBOXYL-TERMINAL LIM DOMAIN-BINDING PROTEIN COMPND 7 2,CLIM-2,LIM DOMAIN-BINDING FACTOR CLIM2,MLDB1,NUCLEAR LIM COMPND 8 INTERACTOR; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: ISL1, LDB1, NLI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX2T KEYWDS ZINC FINGER, TRANSCRIPTIONAL COMPLEX, ZINC BINDING, NUCLEUS, PROTEIN KEYWDS 2 BINDING EXPDTA X-RAY DIFFRACTION AUTHOR M.S.GADD,D.A.JACQUES,J.M.GUSS,J.M.MATTHEWS REVDAT 5 15-NOV-17 4JCJ 1 REMARK REVDAT 4 21-JUN-17 4JCJ 1 COMPND DBREF REVDAT 3 31-MAY-17 4JCJ 1 COMPND REMARK DBREF REVDAT 2 09-OCT-13 4JCJ 1 JRNL REVDAT 1 19-JUN-13 4JCJ 0 JRNL AUTH M.S.GADD,D.A.JACQUES,I.NISEVIC,V.J.CRAIG,A.H.KWAN,J.M.GUSS, JRNL AUTH 2 J.M.MATTHEWS JRNL TITL A STRUCTURAL BASIS FOR THE REGULATION OF THE LIM-HOMEODOMAIN JRNL TITL 2 PROTEIN ISLET 1 (ISL1) BY INTRA- AND INTERMOLECULAR JRNL TITL 3 INTERACTIONS. JRNL REF J.BIOL.CHEM. V. 288 21924 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 23750000 JRNL DOI 10.1074/JBC.M113.478586 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 12218 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.256 REMARK 3 R VALUE (WORKING SET) : 0.254 REMARK 3 FREE R VALUE : 0.299 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 596 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.07 REMARK 3 REFLECTION IN BIN (WORKING SET) : 800 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.3580 REMARK 3 BIN FREE R VALUE SET COUNT : 43 REMARK 3 BIN FREE R VALUE : 0.3760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3083 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.91000 REMARK 3 B22 (A**2) : -6.43000 REMARK 3 B33 (A**2) : -1.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.471 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.401 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 41.993 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.908 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.835 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3180 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1946 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4301 ; 1.304 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4665 ; 0.895 ; 3.015 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 433 ; 6.884 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;29.686 ;23.443 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 387 ;17.159 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;15.486 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 494 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3700 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 680 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2183 ; 1.431 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 899 ; 0.274 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3366 ; 2.534 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 997 ; 5.192 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 935 ; 6.777 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 14 A 75 REMARK 3 ORIGIN FOR THE GROUP (A): -17.6687 -11.2740 -23.8600 REMARK 3 T TENSOR REMARK 3 T11: 0.1531 T22: 0.0615 REMARK 3 T33: 0.1408 T12: 0.0635 REMARK 3 T13: -0.0921 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 2.8632 L22: 4.3941 REMARK 3 L33: 6.0335 L12: 0.8905 REMARK 3 L13: -1.0926 L23: -0.4086 REMARK 3 S TENSOR REMARK 3 S11: 0.1582 S12: 0.0018 S13: 0.0193 REMARK 3 S21: 0.3192 S22: -0.0797 S23: -0.3914 REMARK 3 S31: -0.0110 S32: 0.1545 S33: -0.0785 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 76 A 134 REMARK 3 ORIGIN FOR THE GROUP (A): -4.3999 17.3692 -5.5744 REMARK 3 T TENSOR REMARK 3 T11: 0.0711 T22: 0.1362 REMARK 3 T33: 0.2729 T12: -0.0631 REMARK 3 T13: 0.1061 T23: -0.0233 REMARK 3 L TENSOR REMARK 3 L11: 6.6999 L22: 8.6226 REMARK 3 L33: 12.4119 L12: 1.7986 REMARK 3 L13: 6.1490 L23: 5.0042 REMARK 3 S TENSOR REMARK 3 S11: -0.0587 S12: -0.1698 S13: -0.3117 REMARK 3 S21: 0.4936 S22: -0.3609 S23: 0.3653 REMARK 3 S31: 0.3965 S32: -0.6687 S33: 0.4195 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 300 A 310 REMARK 3 ORIGIN FOR THE GROUP (A): 1.4994 20.6346 -10.9373 REMARK 3 T TENSOR REMARK 3 T11: 0.4765 T22: 0.6847 REMARK 3 T33: 0.8052 T12: -0.1655 REMARK 3 T13: 0.0391 T23: 0.3321 REMARK 3 L TENSOR REMARK 3 L11: 2.7179 L22: 10.6148 REMARK 3 L33: 10.4546 L12: -5.2502 REMARK 3 L13: -0.3664 L23: 2.0136 REMARK 3 S TENSOR REMARK 3 S11: 0.1148 S12: -0.7861 S13: -0.2104 REMARK 3 S21: -0.1162 S22: 1.1299 S23: -0.1132 REMARK 3 S31: 0.0691 S32: -0.7978 S33: -1.2447 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 316 A 327 REMARK 3 ORIGIN FOR THE GROUP (A): -15.8198 -6.7876 -30.3655 REMARK 3 T TENSOR REMARK 3 T11: 0.6422 T22: 0.2700 REMARK 3 T33: 0.4006 T12: 0.1554 REMARK 3 T13: 0.1122 T23: -0.0837 REMARK 3 L TENSOR REMARK 3 L11: 0.9928 L22: 17.8156 REMARK 3 L33: 12.7717 L12: 0.2478 REMARK 3 L13: -3.3818 L23: -5.3421 REMARK 3 S TENSOR REMARK 3 S11: 0.0260 S12: -0.2748 S13: 0.0351 REMARK 3 S21: -1.3952 S22: 0.3410 S23: -0.2264 REMARK 3 S31: -0.5463 S32: 0.6993 S33: -0.3670 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 13 B 75 REMARK 3 ORIGIN FOR THE GROUP (A): -31.7971 -11.5689 -7.5877 REMARK 3 T TENSOR REMARK 3 T11: 0.1483 T22: 0.0346 REMARK 3 T33: 0.0936 T12: -0.0183 REMARK 3 T13: -0.0261 T23: 0.0237 REMARK 3 L TENSOR REMARK 3 L11: 1.9843 L22: 8.8582 REMARK 3 L33: 5.6878 L12: 0.4647 REMARK 3 L13: 0.1990 L23: -1.3756 REMARK 3 S TENSOR REMARK 3 S11: 0.2089 S12: -0.0789 S13: 0.1226 REMARK 3 S21: 0.0101 S22: -0.3174 S23: 0.2235 REMARK 3 S31: 0.0064 S32: -0.0771 S33: 0.1085 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 76 B 136 REMARK 3 ORIGIN FOR THE GROUP (A): -48.1634 16.4693 -25.2730 REMARK 3 T TENSOR REMARK 3 T11: 0.1754 T22: 0.3147 REMARK 3 T33: 0.3052 T12: 0.0974 REMARK 3 T13: -0.0157 T23: -0.0275 REMARK 3 L TENSOR REMARK 3 L11: 5.1179 L22: 10.2373 REMARK 3 L33: 12.7001 L12: -3.3294 REMARK 3 L13: 1.5653 L23: -6.0892 REMARK 3 S TENSOR REMARK 3 S11: 0.3670 S12: 0.3642 S13: -0.1951 REMARK 3 S21: -0.1891 S22: -0.2806 S23: 0.1005 REMARK 3 S31: 0.0531 S32: 0.7602 S33: -0.0864 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 301 B 310 REMARK 3 ORIGIN FOR THE GROUP (A): -52.3379 18.3379 -17.3806 REMARK 3 T TENSOR REMARK 3 T11: 1.1432 T22: 0.5633 REMARK 3 T33: 0.8174 T12: -0.0784 REMARK 3 T13: -0.3146 T23: 0.1817 REMARK 3 L TENSOR REMARK 3 L11: 29.9957 L22: 0.1743 REMARK 3 L33: 0.1226 L12: 2.2417 REMARK 3 L13: 1.6782 L23: 0.1222 REMARK 3 S TENSOR REMARK 3 S11: 0.9567 S12: -0.9795 S13: -1.7829 REMARK 3 S21: 0.1097 S22: -0.4213 S23: -0.0846 REMARK 3 S31: 0.2049 S32: -0.0988 S33: -0.5353 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 315 B 328 REMARK 3 ORIGIN FOR THE GROUP (A): -33.9271 -7.7840 -0.5228 REMARK 3 T TENSOR REMARK 3 T11: 1.0336 T22: 0.4066 REMARK 3 T33: 0.3067 T12: 0.0957 REMARK 3 T13: 0.3568 T23: 0.2758 REMARK 3 L TENSOR REMARK 3 L11: 5.4453 L22: 8.9618 REMARK 3 L33: 14.3903 L12: 4.7618 REMARK 3 L13: -0.3369 L23: 7.8737 REMARK 3 S TENSOR REMARK 3 S11: 0.7887 S12: -0.1672 S13: 0.1192 REMARK 3 S21: 0.4126 S22: -0.2286 S23: -0.0085 REMARK 3 S31: -0.9497 S32: -0.4990 S33: -0.5601 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 13 C 75 REMARK 3 ORIGIN FOR THE GROUP (A): -19.6843 11.3958 -39.0654 REMARK 3 T TENSOR REMARK 3 T11: 0.1942 T22: 0.0571 REMARK 3 T33: 0.0730 T12: 0.0813 REMARK 3 T13: -0.0659 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 2.3327 L22: 8.5152 REMARK 3 L33: 6.5832 L12: -0.1309 REMARK 3 L13: -1.1922 L23: 2.0859 REMARK 3 S TENSOR REMARK 3 S11: -0.0641 S12: 0.1039 S13: 0.1340 REMARK 3 S21: -0.1343 S22: -0.1064 S23: -0.3014 REMARK 3 S31: -0.0040 S32: -0.0812 S33: 0.1705 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 76 C 136 REMARK 3 ORIGIN FOR THE GROUP (A): -8.0421 -16.8590 -58.8325 REMARK 3 T TENSOR REMARK 3 T11: 0.3141 T22: 0.2379 REMARK 3 T33: 0.2280 T12: 0.0795 REMARK 3 T13: 0.0257 T23: -0.1263 REMARK 3 L TENSOR REMARK 3 L11: 3.7452 L22: 8.6036 REMARK 3 L33: 5.2377 L12: -2.6528 REMARK 3 L13: 1.0858 L23: 3.4389 REMARK 3 S TENSOR REMARK 3 S11: 0.1541 S12: -0.1854 S13: 0.2536 REMARK 3 S21: -0.0128 S22: -0.0987 S23: -0.3133 REMARK 3 S31: -0.2490 S32: -0.7216 S33: -0.0554 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 300 C 310 REMARK 3 ORIGIN FOR THE GROUP (A): -2.3315 -18.2043 -52.9596 REMARK 3 T TENSOR REMARK 3 T11: 0.8367 T22: 0.4342 REMARK 3 T33: 1.0012 T12: 0.0738 REMARK 3 T13: -0.6665 T23: -0.0853 REMARK 3 L TENSOR REMARK 3 L11: 8.0463 L22: 19.9622 REMARK 3 L33: 52.6902 L12: 3.8921 REMARK 3 L13: -14.8937 L23: 13.4918 REMARK 3 S TENSOR REMARK 3 S11: -0.1444 S12: 0.1029 S13: -0.1663 REMARK 3 S21: 1.2522 S22: 0.0103 S23: -1.2287 REMARK 3 S31: 1.0566 S32: -0.2099 S33: 0.1342 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 315 C 328 REMARK 3 ORIGIN FOR THE GROUP (A): -14.6087 7.5185 -32.9701 REMARK 3 T TENSOR REMARK 3 T11: 0.4563 T22: 0.4817 REMARK 3 T33: 0.3831 T12: -0.0322 REMARK 3 T13: -0.1102 T23: -0.1070 REMARK 3 L TENSOR REMARK 3 L11: 7.1000 L22: 3.5819 REMARK 3 L33: 9.5807 L12: -0.9598 REMARK 3 L13: 4.2685 L23: -5.4956 REMARK 3 S TENSOR REMARK 3 S11: 0.4500 S12: -0.0045 S13: -0.3186 REMARK 3 S21: 0.5451 S22: -0.1935 S23: 0.1174 REMARK 3 S31: -0.6100 S32: 0.4143 S33: -0.2564 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4JCJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000077874. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2816 REMARK 200 MONOCHROMATOR : ZINC AND PLATINUM FOILS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12362 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.16000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.66000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG 8000, 0.2 M MAGNESIUM REMARK 280 CHLORIDE, 0.1 M TRIS, 0.3 MM ZINC SULFATE, PH 8.9, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.67100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 89.67100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 9 REMARK 465 SER A 10 REMARK 465 LYS A 11 REMARK 465 ARG A 12 REMARK 465 LEU A 13 REMARK 465 VAL A 284 REMARK 465 VAL A 285 REMARK 465 GLU A 286 REMARK 465 ARG A 287 REMARK 465 GLY A 288 REMARK 465 GLY A 289 REMARK 465 SER A 290 REMARK 465 GLY A 291 REMARK 465 GLY A 292 REMARK 465 HIS A 293 REMARK 465 MET A 294 REMARK 465 GLY A 295 REMARK 465 SER A 296 REMARK 465 GLY A 297 REMARK 465 GLY A 298 REMARK 465 GLY A 299 REMARK 465 GLY A 311 REMARK 465 GLY A 312 REMARK 465 GLU A 313 REMARK 465 PHE A 314 REMARK 465 GLY A 315 REMARK 465 THR A 328 REMARK 465 GLN A 329 REMARK 465 PHE A 330 REMARK 465 GLY B 9 REMARK 465 SER B 10 REMARK 465 LYS B 11 REMARK 465 ARG B 12 REMARK 465 GLU B 286 REMARK 465 ARG B 287 REMARK 465 GLY B 288 REMARK 465 GLY B 289 REMARK 465 SER B 290 REMARK 465 GLY B 291 REMARK 465 GLY B 292 REMARK 465 HIS B 293 REMARK 465 MET B 294 REMARK 465 GLY B 295 REMARK 465 SER B 296 REMARK 465 GLY B 297 REMARK 465 GLY B 298 REMARK 465 GLY B 299 REMARK 465 ASP B 300 REMARK 465 GLY B 311 REMARK 465 GLY B 312 REMARK 465 GLU B 313 REMARK 465 PHE B 314 REMARK 465 GLN B 329 REMARK 465 PHE B 330 REMARK 465 GLY C 9 REMARK 465 SER C 10 REMARK 465 LYS C 11 REMARK 465 ARG C 12 REMARK 465 GLU C 286 REMARK 465 ARG C 287 REMARK 465 GLY C 288 REMARK 465 GLY C 289 REMARK 465 SER C 290 REMARK 465 GLY C 291 REMARK 465 GLY C 292 REMARK 465 HIS C 293 REMARK 465 MET C 294 REMARK 465 GLY C 295 REMARK 465 SER C 296 REMARK 465 GLY C 297 REMARK 465 GLY C 298 REMARK 465 GLY C 299 REMARK 465 GLY C 312 REMARK 465 GLU C 313 REMARK 465 PHE C 314 REMARK 465 GLN C 329 REMARK 465 PHE C 330 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 14 CG1 CG2 CD1 REMARK 470 SER A 15 OG REMARK 470 LEU A 16 CG CD1 CD2 REMARK 470 GLN A 23 CG CD OE1 NE2 REMARK 470 ARG A 31 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 35 CG OD1 OD2 REMARK 470 GLU A 37 CG CD OE1 OE2 REMARK 470 ASP A 53 CG OD1 OD2 REMARK 470 ARG A 61 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 62 CG OD1 OD2 REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 LYS A 68 CG CD CE NZ REMARK 470 ARG A 69 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 72 CG1 CG2 CD1 REMARK 470 ARG A 73 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 74 CG CD1 CD2 REMARK 470 ILE A 77 CG1 CG2 CD1 REMARK 470 LYS A 78 CG CD CE NZ REMARK 470 LYS A 81 CG CD CE NZ REMARK 470 ILE A 84 CG1 CG2 CD1 REMARK 470 LYS A 88 CG CD CE NZ REMARK 470 ASN A 89 CG OD1 ND2 REMARK 470 PHE A 91 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL A 92 CG1 CG2 REMARK 470 ARG A 96 CG CD NE CZ NH1 NH2 REMARK 470 SER A 97 OG REMARK 470 LYS A 98 CG CD CE NZ REMARK 470 VAL A 99 CG1 CG2 REMARK 470 ILE A 102 CG1 CG2 CD1 REMARK 470 GLU A 103 CG CD OE1 OE2 REMARK 470 ARG A 123 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 124 CG CD OE1 OE2 REMARK 470 ASP A 125 CG OD1 OD2 REMARK 470 ARG A 130 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 133 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 134 CG OD1 OD2 REMARK 470 VAL A 303 CG1 CG2 REMARK 470 LEU A 309 CG CD1 CD2 REMARK 470 MET A 310 CG SD CE REMARK 470 ASP A 316 CG OD1 OD2 REMARK 470 GLU A 317 CG CD OE1 OE2 REMARK 470 LEU A 325 CG CD1 CD2 REMARK 470 GLU A 326 CG CD OE1 OE2 REMARK 470 LEU B 13 CG CD1 CD2 REMARK 470 SER B 15 OG REMARK 470 GLN B 27 CG CD OE1 NE2 REMARK 470 ILE B 29 CG1 CG2 CD1 REMARK 470 ARG B 31 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 35 CG OD1 OD2 REMARK 470 GLU B 37 CG CD OE1 OE2 REMARK 470 LYS B 44 CG CD CE NZ REMARK 470 ARG B 61 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 64 CG CD CE NZ REMARK 470 LYS B 68 CG CD CE NZ REMARK 470 ARG B 73 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 81 CG CD CE NZ REMARK 470 LYS B 88 CG CD CE NZ REMARK 470 ASN B 89 CG OD1 ND2 REMARK 470 VAL B 92 CG1 CG2 REMARK 470 ARG B 94 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 96 CG CD NE CZ NH1 NH2 REMARK 470 SER B 97 OG REMARK 470 LYS B 98 CG CD CE NZ REMARK 470 VAL B 99 CG1 CG2 REMARK 470 ILE B 102 CG1 CG2 CD1 REMARK 470 SER B 111 OG REMARK 470 LEU B 122 CG CD1 CD2 REMARK 470 GLU B 124 CG CD OE1 OE2 REMARK 470 ASP B 125 CG OD1 OD2 REMARK 470 VAL B 135 CG1 CG2 REMARK 470 VAL B 301 CG1 CG2 REMARK 470 GLU B 306 CG CD OE1 OE2 REMARK 470 THR B 308 OG1 CG2 REMARK 470 LEU B 309 CG CD1 CD2 REMARK 470 MET B 310 CG SD CE REMARK 470 ASP B 316 CG OD1 OD2 REMARK 470 GLU B 317 CG CD OE1 OE2 REMARK 470 LEU B 325 CG CD1 CD2 REMARK 470 GLU B 326 CG CD OE1 OE2 REMARK 470 LEU C 13 CG CD1 CD2 REMARK 470 SER C 15 OG REMARK 470 GLN C 27 CG CD OE1 NE2 REMARK 470 ARG C 31 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 35 CG OD1 OD2 REMARK 470 GLU C 37 CG CD OE1 OE2 REMARK 470 LYS C 44 CG CD CE NZ REMARK 470 ARG C 61 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 62 CG OD1 OD2 REMARK 470 LYS C 64 CG CD CE NZ REMARK 470 LYS C 68 CG CD CE NZ REMARK 470 ILE C 77 CG1 CG2 CD1 REMARK 470 LYS C 78 CG CD CE NZ REMARK 470 LYS C 81 CG CD CE NZ REMARK 470 LYS C 88 CG CD CE NZ REMARK 470 PHE C 91 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL C 92 CG1 CG2 REMARK 470 ARG C 94 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 96 CG CD NE CZ NH1 NH2 REMARK 470 SER C 97 OG REMARK 470 LYS C 98 CG CD CE NZ REMARK 470 VAL C 99 CG1 CG2 REMARK 470 ILE C 102 CG1 CG2 CD1 REMARK 470 GLU C 103 CG CD OE1 OE2 REMARK 470 SER C 111 OG REMARK 470 ARG C 112 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 122 CG CD1 CD2 REMARK 470 ARG C 123 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 124 CG CD OE1 OE2 REMARK 470 PHE C 128 CG CD1 CD2 CE1 CE2 CZ REMARK 470 HIS C 133 CG ND1 CD2 CE1 NE2 REMARK 470 ASP C 134 CG OD1 OD2 REMARK 470 VAL C 301 CG1 CG2 REMARK 470 GLU C 306 CG CD OE1 OE2 REMARK 470 LEU C 309 CG CD1 CD2 REMARK 470 GLU C 317 CG CD OE1 OE2 REMARK 470 ARG C 324 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 326 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 81 -84.58 -82.67 REMARK 500 ARG A 96 -60.67 61.22 REMARK 500 ASN B 49 -2.93 80.39 REMARK 500 ASP B 62 39.30 39.00 REMARK 500 LYS B 68 -74.18 -33.62 REMARK 500 ARG B 96 54.76 14.49 REMARK 500 SER B 97 -7.40 94.85 REMARK 500 GLU C 47 -61.61 -91.60 REMARK 500 ASN C 49 -12.59 84.69 REMARK 500 ASP C 62 48.29 38.73 REMARK 500 LYS C 81 -84.47 -81.26 REMARK 500 SER C 83 -21.50 87.83 REMARK 500 ALA C 95 96.31 -161.43 REMARK 500 ASP C 134 4.61 -69.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 132 OD2 REMARK 620 2 CYS C 107 SG 102.4 REMARK 620 3 CYS C 110 SG 112.9 99.7 REMARK 620 4 CYS C 129 SG 108.6 104.6 125.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 70 OD2 REMARK 620 2 CYS B 45 SG 87.1 REMARK 620 3 CYS B 67 SG 134.5 107.9 REMARK 620 4 CYS B 48 SG 97.2 103.7 119.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 70 OD2 REMARK 620 2 CYS A 45 SG 85.4 REMARK 620 3 CYS A 48 SG 96.4 94.7 REMARK 620 4 CYS A 67 SG 138.4 118.3 113.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 132 OD2 REMARK 620 2 CYS B 129 SG 128.6 REMARK 620 3 CYS B 107 SG 79.4 122.1 REMARK 620 4 CYS B 110 SG 107.9 119.5 84.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 70 OD2 REMARK 620 2 CYS C 45 SG 105.9 REMARK 620 3 CYS C 48 SG 101.3 101.6 REMARK 620 4 CYS C 67 SG 139.2 102.3 101.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 132 OD2 REMARK 620 2 CYS A 110 SG 101.0 REMARK 620 3 CYS A 107 SG 108.0 92.0 REMARK 620 4 CYS A 129 SG 121.8 106.7 120.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 39 ND1 REMARK 620 2 CYS B 17 SG 112.6 REMARK 620 3 CYS B 42 SG 94.8 112.2 REMARK 620 4 CYS B 20 SG 103.6 112.7 119.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 39 ND1 REMARK 620 2 CYS A 17 SG 96.8 REMARK 620 3 CYS A 20 SG 98.3 101.1 REMARK 620 4 CYS A 42 SG 122.1 116.6 117.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 101 ND1 REMARK 620 2 CYS B 104 SG 131.1 REMARK 620 3 CYS B 82 SG 95.6 127.8 REMARK 620 4 CYS B 79 SG 90.9 111.7 85.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 39 ND1 REMARK 620 2 CYS C 42 SG 116.7 REMARK 620 3 CYS C 17 SG 108.7 113.8 REMARK 620 4 CYS C 20 SG 106.5 110.6 98.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 101 ND1 REMARK 620 2 CYS A 82 SG 89.7 REMARK 620 3 CYS A 104 SG 107.3 108.9 REMARK 620 4 CYS A 79 SG 95.4 109.1 135.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 101 ND1 REMARK 620 2 CYS C 104 SG 103.7 REMARK 620 3 CYS C 82 SG 100.1 106.7 REMARK 620 4 CYS C 79 SG 96.7 134.3 109.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 404 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CRYSTALLIZED SEQUENCE CORRESPONDS TO THE ISOFORM 3 OF LIM REMARK 999 DOMAIN-BINDING PROTEIN 1.DATABASE REFERENCE UNPROT ENTRY P70662-3 DBREF 4JCJ A 11 287 UNP P61372 ISL1_MOUSE 11 138 DBREF 4JCJ A 300 330 UNP P70662 LDB1_MOUSE 300 330 DBREF 4JCJ B 11 287 UNP P61372 ISL1_MOUSE 11 138 DBREF 4JCJ B 300 330 UNP P70662 LDB1_MOUSE 300 330 DBREF 4JCJ C 11 287 UNP P61372 ISL1_MOUSE 11 138 DBREF 4JCJ C 300 330 UNP P70662 LDB1_MOUSE 300 330 SEQADV 4JCJ GLY A 9 UNP P61372 EXPRESSION TAG SEQADV 4JCJ SER A 10 UNP P61372 EXPRESSION TAG SEQADV 4JCJ GLY A 288 UNP P61372 LINKER SEQADV 4JCJ GLY A 289 UNP P61372 LINKER SEQADV 4JCJ SER A 290 UNP P61372 LINKER SEQADV 4JCJ GLY A 291 UNP P61372 LINKER SEQADV 4JCJ GLY A 292 UNP P61372 LINKER SEQADV 4JCJ HIS A 293 UNP P61372 LINKER SEQADV 4JCJ MET A 294 UNP P61372 LINKER SEQADV 4JCJ GLY A 295 UNP P61372 LINKER SEQADV 4JCJ SER A 296 UNP P61372 LINKER SEQADV 4JCJ GLY A 297 UNP P61372 LINKER SEQADV 4JCJ GLY A 298 UNP P61372 LINKER SEQADV 4JCJ GLY A 299 UNP P61372 LINKER SEQADV 4JCJ GLY B 9 UNP P61372 EXPRESSION TAG SEQADV 4JCJ SER B 10 UNP P61372 EXPRESSION TAG SEQADV 4JCJ GLY B 288 UNP P61372 LINKER SEQADV 4JCJ GLY B 289 UNP P61372 LINKER SEQADV 4JCJ SER B 290 UNP P61372 LINKER SEQADV 4JCJ GLY B 291 UNP P61372 LINKER SEQADV 4JCJ GLY B 292 UNP P61372 LINKER SEQADV 4JCJ HIS B 293 UNP P61372 LINKER SEQADV 4JCJ MET B 294 UNP P61372 LINKER SEQADV 4JCJ GLY B 295 UNP P61372 LINKER SEQADV 4JCJ SER B 296 UNP P61372 LINKER SEQADV 4JCJ GLY B 297 UNP P61372 LINKER SEQADV 4JCJ GLY B 298 UNP P61372 LINKER SEQADV 4JCJ GLY B 299 UNP P61372 LINKER SEQADV 4JCJ GLY C 9 UNP P61372 EXPRESSION TAG SEQADV 4JCJ SER C 10 UNP P61372 EXPRESSION TAG SEQADV 4JCJ GLY C 288 UNP P61372 LINKER SEQADV 4JCJ GLY C 289 UNP P61372 LINKER SEQADV 4JCJ SER C 290 UNP P61372 LINKER SEQADV 4JCJ GLY C 291 UNP P61372 LINKER SEQADV 4JCJ GLY C 292 UNP P61372 LINKER SEQADV 4JCJ HIS C 293 UNP P61372 LINKER SEQADV 4JCJ MET C 294 UNP P61372 LINKER SEQADV 4JCJ GLY C 295 UNP P61372 LINKER SEQADV 4JCJ SER C 296 UNP P61372 LINKER SEQADV 4JCJ GLY C 297 UNP P61372 LINKER SEQADV 4JCJ GLY C 298 UNP P61372 LINKER SEQADV 4JCJ GLY C 299 UNP P61372 LINKER SEQRES 1 A 173 GLY SER LYS ARG LEU ILE SER LEU CYS VAL GLY CYS GLY SEQRES 2 A 173 ASN GLN ILE HIS ASP GLN TYR ILE LEU ARG VAL SER PRO SEQRES 3 A 173 ASP LEU GLU TRP HIS ALA ALA CYS LEU LYS CYS ALA GLU SEQRES 4 A 173 CYS ASN GLN TYR LEU ASP GLU SER CYS THR CYS PHE VAL SEQRES 5 A 173 ARG ASP GLY LYS THR TYR CYS LYS ARG ASP TYR ILE ARG SEQRES 6 A 173 LEU TYR GLY ILE LYS CYS ALA LYS CYS SER ILE GLY PHE SEQRES 7 A 173 SER LYS ASN ASP PHE VAL MET ARG ALA ARG SER LYS VAL SEQRES 8 A 173 TYR HIS ILE GLU CYS PHE ARG CYS VAL ALA CYS SER ARG SEQRES 9 A 173 GLN LEU ILE PRO GLY ASP GLU PHE ALA LEU ARG GLU ASP SEQRES 10 A 173 GLY LEU PHE CYS ARG ALA ASP HIS ASP VAL VAL GLU ARG SEQRES 11 A 173 GLY GLY SER GLY GLY HIS MET GLY SER GLY GLY GLY ASP SEQRES 12 A 173 VAL MET VAL VAL GLY GLU PRO THR LEU MET GLY GLY GLU SEQRES 13 A 173 PHE GLY ASP GLU ASP GLU ARG LEU ILE THR ARG LEU GLU SEQRES 14 A 173 ASN THR GLN PHE SEQRES 1 B 173 GLY SER LYS ARG LEU ILE SER LEU CYS VAL GLY CYS GLY SEQRES 2 B 173 ASN GLN ILE HIS ASP GLN TYR ILE LEU ARG VAL SER PRO SEQRES 3 B 173 ASP LEU GLU TRP HIS ALA ALA CYS LEU LYS CYS ALA GLU SEQRES 4 B 173 CYS ASN GLN TYR LEU ASP GLU SER CYS THR CYS PHE VAL SEQRES 5 B 173 ARG ASP GLY LYS THR TYR CYS LYS ARG ASP TYR ILE ARG SEQRES 6 B 173 LEU TYR GLY ILE LYS CYS ALA LYS CYS SER ILE GLY PHE SEQRES 7 B 173 SER LYS ASN ASP PHE VAL MET ARG ALA ARG SER LYS VAL SEQRES 8 B 173 TYR HIS ILE GLU CYS PHE ARG CYS VAL ALA CYS SER ARG SEQRES 9 B 173 GLN LEU ILE PRO GLY ASP GLU PHE ALA LEU ARG GLU ASP SEQRES 10 B 173 GLY LEU PHE CYS ARG ALA ASP HIS ASP VAL VAL GLU ARG SEQRES 11 B 173 GLY GLY SER GLY GLY HIS MET GLY SER GLY GLY GLY ASP SEQRES 12 B 173 VAL MET VAL VAL GLY GLU PRO THR LEU MET GLY GLY GLU SEQRES 13 B 173 PHE GLY ASP GLU ASP GLU ARG LEU ILE THR ARG LEU GLU SEQRES 14 B 173 ASN THR GLN PHE SEQRES 1 C 173 GLY SER LYS ARG LEU ILE SER LEU CYS VAL GLY CYS GLY SEQRES 2 C 173 ASN GLN ILE HIS ASP GLN TYR ILE LEU ARG VAL SER PRO SEQRES 3 C 173 ASP LEU GLU TRP HIS ALA ALA CYS LEU LYS CYS ALA GLU SEQRES 4 C 173 CYS ASN GLN TYR LEU ASP GLU SER CYS THR CYS PHE VAL SEQRES 5 C 173 ARG ASP GLY LYS THR TYR CYS LYS ARG ASP TYR ILE ARG SEQRES 6 C 173 LEU TYR GLY ILE LYS CYS ALA LYS CYS SER ILE GLY PHE SEQRES 7 C 173 SER LYS ASN ASP PHE VAL MET ARG ALA ARG SER LYS VAL SEQRES 8 C 173 TYR HIS ILE GLU CYS PHE ARG CYS VAL ALA CYS SER ARG SEQRES 9 C 173 GLN LEU ILE PRO GLY ASP GLU PHE ALA LEU ARG GLU ASP SEQRES 10 C 173 GLY LEU PHE CYS ARG ALA ASP HIS ASP VAL VAL GLU ARG SEQRES 11 C 173 GLY GLY SER GLY GLY HIS MET GLY SER GLY GLY GLY ASP SEQRES 12 C 173 VAL MET VAL VAL GLY GLU PRO THR LEU MET GLY GLY GLU SEQRES 13 C 173 PHE GLY ASP GLU ASP GLU ARG LEU ILE THR ARG LEU GLU SEQRES 14 C 173 ASN THR GLN PHE HET ZN A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET ZN A 404 1 HET ZN B 401 1 HET ZN B 402 1 HET ZN B 403 1 HET ZN B 404 1 HET ZN C 401 1 HET ZN C 402 1 HET ZN C 403 1 HET ZN C 404 1 HETNAM ZN ZINC ION FORMUL 4 ZN 12(ZN 2+) HELIX 1 1 HIS A 39 LEU A 43 5 5 HELIX 2 2 TYR A 51 SER A 55 5 5 HELIX 3 3 CYS A 67 TYR A 75 1 9 HELIX 4 4 GLU A 103 PHE A 105 5 3 HELIX 5 5 HIS B 39 LEU B 43 5 5 HELIX 6 6 CYS B 67 GLY B 76 1 10 HELIX 7 7 ARG B 130 VAL B 135 1 6 HELIX 8 8 TYR C 51 SER C 55 5 5 HELIX 9 9 CYS C 67 GLY C 76 1 10 HELIX 10 10 HIS C 101 PHE C 105 5 5 HELIX 11 11 ARG C 130 ASP C 134 1 5 SHEET 1 A 5 LEU A 36 TRP A 38 0 SHEET 2 A 5 TYR A 28 VAL A 32 -1 N VAL A 32 O LEU A 36 SHEET 3 A 5 GLU A 319 GLU A 326 -1 O LEU A 325 N ILE A 29 SHEET 4 A 5 THR A 57 ARG A 61 -1 N CYS A 58 O ARG A 320 SHEET 5 A 5 LYS A 64 TYR A 66 -1 O TYR A 66 N PHE A 59 SHEET 1 B 3 LYS A 98 HIS A 101 0 SHEET 2 B 3 PHE A 91 ALA A 95 -1 O ALA A 95 N LYS A 98 SHEET 3 B 3 THR A 308 LEU A 309 -1 O THR A 308 N VAL A 92 SHEET 1 C 3 LEU A 127 CYS A 129 0 SHEET 2 C 3 GLU A 119 LEU A 122 -1 N ALA A 121 O PHE A 128 SHEET 3 C 3 MET A 302 VAL A 303 -1 O MET A 302 N PHE A 120 SHEET 1 D 3 LEU B 36 TRP B 38 0 SHEET 2 D 3 TYR B 28 VAL B 32 -1 N LEU B 30 O TRP B 38 SHEET 3 D 3 ARG B 324 GLU B 326 -1 O LEU B 325 N ILE B 29 SHEET 1 E 3 LYS B 64 TYR B 66 0 SHEET 2 E 3 THR B 57 ARG B 61 -1 N PHE B 59 O TYR B 66 SHEET 3 E 3 GLU B 319 LEU B 321 -1 O ARG B 320 N CYS B 58 SHEET 1 F 3 LYS B 98 HIS B 101 0 SHEET 2 F 3 PHE B 91 ALA B 95 -1 N ALA B 95 O LYS B 98 SHEET 3 F 3 THR B 308 LEU B 309 -1 O THR B 308 N VAL B 92 SHEET 1 G 3 PHE B 128 CYS B 129 0 SHEET 2 G 3 GLU B 119 ALA B 121 -1 N ALA B 121 O PHE B 128 SHEET 3 G 3 MET B 302 VAL B 303 -1 O MET B 302 N PHE B 120 SHEET 1 H 5 LEU C 36 TRP C 38 0 SHEET 2 H 5 TYR C 28 VAL C 32 -1 N VAL C 32 O LEU C 36 SHEET 3 H 5 GLU C 319 GLU C 326 -1 O LEU C 325 N ILE C 29 SHEET 4 H 5 THR C 57 ARG C 61 -1 N CYS C 58 O ARG C 320 SHEET 5 H 5 LYS C 64 TYR C 66 -1 O LYS C 64 N ARG C 61 SHEET 1 I 3 LYS C 98 TYR C 100 0 SHEET 2 I 3 PHE C 91 ALA C 95 -1 N ALA C 95 O LYS C 98 SHEET 3 I 3 THR C 308 LEU C 309 -1 O THR C 308 N VAL C 92 SHEET 1 J 3 GLY C 126 CYS C 129 0 SHEET 2 J 3 GLU C 119 ARG C 123 -1 N ARG C 123 O GLY C 126 SHEET 3 J 3 MET C 302 VAL C 303 -1 O MET C 302 N PHE C 120 SSBOND 1 CYS A 56 CYS C 56 1555 1555 2.02 SSBOND 2 CYS B 56 CYS B 56 1555 4555 2.72 LINK OD2 ASP C 132 ZN ZN C 404 1555 1555 1.79 LINK OD2 ASP B 70 ZN ZN B 403 1555 1555 2.01 LINK OD2 ASP A 70 ZN ZN A 402 1555 1555 2.02 LINK OD2 ASP B 132 ZN ZN B 401 1555 1555 2.02 LINK OD2 ASP C 70 ZN ZN C 402 1555 1555 2.02 LINK OD2 ASP A 132 ZN ZN A 404 1555 1555 2.02 LINK ND1 HIS B 39 ZN ZN B 402 1555 1555 2.12 LINK ND1 HIS A 39 ZN ZN A 401 1555 1555 2.13 LINK ND1 HIS B 101 ZN ZN B 404 1555 1555 2.14 LINK ND1 HIS C 39 ZN ZN C 401 1555 1555 2.14 LINK ND1 HIS A 101 ZN ZN A 403 1555 1555 2.15 LINK ND1 HIS C 101 ZN ZN C 403 1555 1555 2.15 LINK SG CYS A 45 ZN ZN A 402 1555 1555 2.28 LINK SG CYS C 42 ZN ZN C 401 1555 1555 2.29 LINK SG CYS B 129 ZN ZN B 401 1555 1555 2.30 LINK SG CYS B 17 ZN ZN B 402 1555 1555 2.31 LINK SG CYS C 45 ZN ZN C 402 1555 1555 2.31 LINK SG CYS B 42 ZN ZN B 402 1555 1555 2.31 LINK SG CYS B 45 ZN ZN B 403 1555 1555 2.32 LINK SG CYS B 104 ZN ZN B 404 1555 1555 2.32 LINK SG CYS A 17 ZN ZN A 401 1555 1555 2.32 LINK SG CYS A 82 ZN ZN A 403 1555 1555 2.32 LINK SG CYS B 67 ZN ZN B 403 1555 1555 2.32 LINK SG CYS A 110 ZN ZN A 404 1555 1555 2.32 LINK SG CYS A 20 ZN ZN A 401 1555 1555 2.32 LINK SG CYS C 107 ZN ZN C 404 1555 1555 2.32 LINK SG CYS B 48 ZN ZN B 403 1555 1555 2.32 LINK SG CYS A 104 ZN ZN A 403 1555 1555 2.32 LINK SG CYS B 82 ZN ZN B 404 1555 1555 2.32 LINK SG CYS A 42 ZN ZN A 401 1555 1555 2.33 LINK SG CYS A 48 ZN ZN A 402 1555 1555 2.33 LINK SG CYS A 107 ZN ZN A 404 1555 1555 2.33 LINK SG CYS A 67 ZN ZN A 402 1555 1555 2.33 LINK SG CYS C 17 ZN ZN C 401 1555 1555 2.33 LINK SG CYS C 110 ZN ZN C 404 1555 1555 2.33 LINK SG CYS B 107 ZN ZN B 401 1555 1555 2.33 LINK SG CYS C 104 ZN ZN C 403 1555 1555 2.33 LINK SG CYS C 20 ZN ZN C 401 1555 1555 2.34 LINK SG CYS B 110 ZN ZN B 401 1555 1555 2.34 LINK SG CYS A 79 ZN ZN A 403 1555 1555 2.34 LINK SG CYS C 48 ZN ZN C 402 1555 1555 2.34 LINK SG CYS C 82 ZN ZN C 403 1555 1555 2.34 LINK SG CYS A 129 ZN ZN A 404 1555 1555 2.34 LINK SG CYS C 79 ZN ZN C 403 1555 1555 2.34 LINK SG CYS C 67 ZN ZN C 402 1555 1555 2.35 LINK SG CYS B 20 ZN ZN B 402 1555 1555 2.35 LINK SG CYS C 129 ZN ZN C 404 1555 1555 2.35 LINK SG CYS B 79 ZN ZN B 404 1555 1555 2.37 CISPEP 1 SER A 33 PRO A 34 0 -15.28 CISPEP 2 SER B 33 PRO B 34 0 -12.54 CISPEP 3 SER C 33 PRO C 34 0 -12.82 SITE 1 AC1 4 CYS A 17 CYS A 20 HIS A 39 CYS A 42 SITE 1 AC2 4 CYS A 45 CYS A 48 CYS A 67 ASP A 70 SITE 1 AC3 4 CYS A 79 CYS A 82 HIS A 101 CYS A 104 SITE 1 AC4 4 CYS A 107 CYS A 110 CYS A 129 ASP A 132 SITE 1 AC5 4 CYS B 107 CYS B 110 CYS B 129 ASP B 132 SITE 1 AC6 4 CYS B 17 CYS B 20 HIS B 39 CYS B 42 SITE 1 AC7 4 CYS B 45 CYS B 48 CYS B 67 ASP B 70 SITE 1 AC8 4 CYS B 79 CYS B 82 HIS B 101 CYS B 104 SITE 1 AC9 4 CYS C 17 CYS C 20 HIS C 39 CYS C 42 SITE 1 BC1 4 CYS C 45 CYS C 48 CYS C 67 ASP C 70 SITE 1 BC2 4 CYS C 79 CYS C 82 HIS C 101 CYS C 104 SITE 1 BC3 4 CYS C 107 CYS C 110 CYS C 129 ASP C 132 CRYST1 57.310 56.639 179.342 90.00 90.00 90.00 P 2 2 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017449 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017656 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005576 0.00000