HEADER DNA BINDING PROTEIN/DNA 22-FEB-13 4JCY TITLE CRYSTAL STRUCTURE OF THE RESTRICTION-MODIFICATION CONTROLLER PROTEIN TITLE 2 C.CSP231I OR OPERATOR COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: CSP231I C PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'- COMPND 7 D(*AP*AP*AP*CP*TP*AP*AP*GP*AP*AP*AP*AP*TP*CP*TP*TP*AP*GP*CP*AP*A)- COMPND 8 3'); COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'- COMPND 13 D(*TP*TP*GP*CP*TP*AP*AP*GP*AP*TP*TP*TP*TP*CP*TP*TP*AP*GP*TP*TP*T)- COMPND 14 3'); COMPND 15 CHAIN: D; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CITROBACTER SP. RFL231; SOURCE 3 ORGANISM_TAXID: 315237; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) GOLD; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-11A; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES KEYWDS HELIX-TURN-HELIX, C CONTROLLER PROTEIN, RESTRICTION-MODIFICATION KEYWDS 2 SYSTEMS, TRANSCRIPTIONAL REGULATION, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.B.SHEVTSOV,S.D.STREETER,S.J.THRESH,J.E.MCGEEHAN,G.G.KNEALE REVDAT 4 20-SEP-23 4JCY 1 REMARK REVDAT 3 15-APR-15 4JCY 1 JRNL REVDAT 2 11-FEB-15 4JCY 1 JRNL REVDAT 1 26-FEB-14 4JCY 0 JRNL AUTH M.B.SHEVTSOV,S.D.STREETER,S.J.THRESH,A.SWIDERSKA, JRNL AUTH 2 J.E.MCGEEHAN,G.G.KNEALE JRNL TITL STRUCTURAL ANALYSIS OF DNA BINDING BY C.CSP231I, A MEMBER OF JRNL TITL 2 A NOVEL CLASS OF R-M CONTROLLER PROTEINS REGULATING GENE JRNL TITL 3 EXPRESSION. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 71 398 2015 JRNL REFN ISSN 0907-4449 JRNL PMID 25664751 JRNL DOI 10.1107/S139900471402690X REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 30476 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.148 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.163 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1614 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2270 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.1570 REMARK 3 BIN FREE R VALUE SET COUNT : 109 REMARK 3 BIN FREE R VALUE : 0.1920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1494 REMARK 3 NUCLEIC ACID ATOMS : 855 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 402 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.41000 REMARK 3 B22 (A**2) : 0.41000 REMARK 3 B33 (A**2) : -0.81000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.021 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.019 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.033 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.104 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.968 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2474 ; 0.004 ; 0.016 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3511 ; 0.952 ; 1.645 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 182 ; 4.041 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 76 ;37.751 ;23.684 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 296 ;11.329 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;12.664 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 348 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1573 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.971 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : K, H, -L REMARK 3 TWIN FRACTION : 0.029 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 92 REMARK 3 ORIGIN FOR THE GROUP (A): 57.6103 40.8242 -9.7151 REMARK 3 T TENSOR REMARK 3 T11: 0.0674 T22: 0.0766 REMARK 3 T33: 0.0691 T12: -0.0320 REMARK 3 T13: 0.0186 T23: 0.0191 REMARK 3 L TENSOR REMARK 3 L11: 2.4308 L22: 2.4567 REMARK 3 L33: 0.7572 L12: -0.8158 REMARK 3 L13: 0.3185 L23: -0.3512 REMARK 3 S TENSOR REMARK 3 S11: 0.0707 S12: 0.2135 S13: 0.1554 REMARK 3 S21: -0.0730 S22: -0.0890 S23: -0.3716 REMARK 3 S31: -0.1102 S32: 0.1340 S33: 0.0183 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 92 REMARK 3 ORIGIN FOR THE GROUP (A): 64.1036 29.5138 4.1947 REMARK 3 T TENSOR REMARK 3 T11: 0.0514 T22: 0.0527 REMARK 3 T33: 0.0685 T12: -0.0160 REMARK 3 T13: -0.0201 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 1.4186 L22: 2.9054 REMARK 3 L33: 1.5691 L12: -0.0742 REMARK 3 L13: 0.2222 L23: -0.6462 REMARK 3 S TENSOR REMARK 3 S11: 0.0289 S12: -0.0384 S13: 0.1357 REMARK 3 S21: 0.2190 S22: -0.0688 S23: -0.2845 REMARK 3 S31: -0.1970 S32: 0.1733 S33: 0.0399 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 21 REMARK 3 ORIGIN FOR THE GROUP (A): 42.3730 24.4942 -2.7016 REMARK 3 T TENSOR REMARK 3 T11: 0.0874 T22: 0.1178 REMARK 3 T33: 0.1153 T12: -0.0477 REMARK 3 T13: 0.0014 T23: -0.0168 REMARK 3 L TENSOR REMARK 3 L11: 0.9980 L22: 3.1956 REMARK 3 L33: 0.8711 L12: -0.6077 REMARK 3 L13: 0.3777 L23: -1.3631 REMARK 3 S TENSOR REMARK 3 S11: 0.0942 S12: -0.0056 S13: -0.2460 REMARK 3 S21: -0.0100 S22: 0.0412 S23: 0.4463 REMARK 3 S31: 0.0847 S32: -0.0423 S33: -0.1354 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 21 REMARK 3 ORIGIN FOR THE GROUP (A): 42.3055 24.4521 -2.8378 REMARK 3 T TENSOR REMARK 3 T11: 0.0933 T22: 0.1211 REMARK 3 T33: 0.1192 T12: -0.0275 REMARK 3 T13: 0.0116 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 1.8472 L22: 2.0975 REMARK 3 L33: 0.8115 L12: -1.2391 REMARK 3 L13: 1.0109 L23: -1.1416 REMARK 3 S TENSOR REMARK 3 S11: 0.0207 S12: -0.0339 S13: -0.2710 REMARK 3 S21: 0.0094 S22: 0.1422 S23: 0.3914 REMARK 3 S31: -0.0014 S32: -0.1278 S33: -0.1630 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 201 A 310 REMARK 3 RESIDUE RANGE : B 201 B 318 REMARK 3 RESIDUE RANGE : C 101 C 188 REMARK 3 RESIDUE RANGE : D 101 D 186 REMARK 3 ORIGIN FOR THE GROUP (A): 52.0504 28.6680 -2.4486 REMARK 3 T TENSOR REMARK 3 T11: 0.1491 T22: 0.1717 REMARK 3 T33: 0.1689 T12: -0.0272 REMARK 3 T13: 0.0139 T23: -0.0203 REMARK 3 L TENSOR REMARK 3 L11: 0.4464 L22: 1.1160 REMARK 3 L33: 0.5108 L12: -0.5176 REMARK 3 L13: 0.3013 L23: -0.5136 REMARK 3 S TENSOR REMARK 3 S11: 0.0028 S12: -0.0060 S13: -0.0154 REMARK 3 S21: -0.0129 S22: -0.0015 S23: 0.0357 REMARK 3 S31: 0.0228 S32: -0.0355 S33: -0.0013 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 101 A 102 REMARK 3 RESIDUE RANGE : B 101 B 102 REMARK 3 ORIGIN FOR THE GROUP (A): 56.7520 32.7727 -2.6715 REMARK 3 T TENSOR REMARK 3 T11: 0.1319 T22: 0.0639 REMARK 3 T33: 0.1523 T12: 0.0631 REMARK 3 T13: 0.0091 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 3.8207 L22: 5.3454 REMARK 3 L33: 4.2778 L12: -0.8265 REMARK 3 L13: -2.2243 L23: 4.4007 REMARK 3 S TENSOR REMARK 3 S11: -0.3629 S12: -0.2235 S13: -0.2734 REMARK 3 S21: -0.0408 S22: -0.2149 S23: 0.5986 REMARK 3 S31: 0.1099 S32: -0.0582 S33: 0.5778 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JCY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000077889. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30476 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 53.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.55100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3LFP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS DIALYSED AGAINST THE REMARK 280 BUFFER CONTAINING 0.1 M NACL, 50 MM TRIS-HCL PH 8.0, 1 MM EDTA. REMARK 280 CRYSTALLISATION CONDITIONS: 0.2 M SODIUM IODIDE, 0.1 M BIS-TRIS REMARK 280 PROPANE PH 6.0, 15 % (W/V) PEG3350, 10 MM SPERMIDINE, PROTEIN REMARK 280 DIMER/DNA MOLAR RATIO 1:1, PROTEIN CONCENTRATION 4.6 MG/ML , REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.69333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 105.38667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 79.04000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 131.73333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 26.34667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL ASSEMBLY IS A PROTEIN REMARK 300 DIMER BOUND TO DNA DUPLEX. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 93 REMARK 465 ARG A 94 REMARK 465 LYS A 95 REMARK 465 LYS A 96 REMARK 465 ALA A 97 REMARK 465 LYS A 98 REMARK 465 ILE B 93 REMARK 465 ARG B 94 REMARK 465 LYS B 95 REMARK 465 LYS B 96 REMARK 465 ALA B 97 REMARK 465 LYS B 98 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LFP RELATED DB: PDB REMARK 900 FREE NON-COMPLEXED C.CSP231I PROTEIN DIMER REMARK 900 RELATED ID: 3LIS RELATED DB: PDB REMARK 900 FREE NON-COMPLEXED C.CSP231I PROTEIN DIMER (MONOCLINIC FORM) REMARK 900 RELATED ID: 4JCX RELATED DB: PDB REMARK 900 C.CSP231I PROTEIN DIMER COMPLEXED WITH 21 BP OL OPERATOR SEQUENCE DBREF 4JCY A 1 98 UNP Q32WH4 Q32WH4_9ENTR 1 98 DBREF 4JCY B 1 98 UNP Q32WH4 Q32WH4_9ENTR 1 98 DBREF 4JCY C 1 21 PDB 4JCY 4JCY 1 21 DBREF 4JCY D 1 21 PDB 4JCY 4JCY 1 21 SEQRES 1 A 98 MET LEU ILE ARG ARG LEU LYS ASP ALA ARG LEU ARG ALA SEQRES 2 A 98 GLY ILE SER GLN GLU LYS LEU GLY VAL LEU ALA GLY ILE SEQRES 3 A 98 ASP GLU ALA SER ALA SER ALA ARG MET ASN GLN TYR GLU SEQRES 4 A 98 LYS GLY LYS HIS ALA PRO ASP PHE GLU MET ALA ASN ARG SEQRES 5 A 98 LEU ALA LYS VAL LEU LYS ILE PRO VAL SER TYR LEU TYR SEQRES 6 A 98 THR PRO GLU ASP ASP LEU ALA GLN ILE ILE LEU THR TRP SEQRES 7 A 98 ASN GLU LEU ASN GLU GLN GLU ARG LYS ARG ILE ASN PHE SEQRES 8 A 98 TYR ILE ARG LYS LYS ALA LYS SEQRES 1 B 98 MET LEU ILE ARG ARG LEU LYS ASP ALA ARG LEU ARG ALA SEQRES 2 B 98 GLY ILE SER GLN GLU LYS LEU GLY VAL LEU ALA GLY ILE SEQRES 3 B 98 ASP GLU ALA SER ALA SER ALA ARG MET ASN GLN TYR GLU SEQRES 4 B 98 LYS GLY LYS HIS ALA PRO ASP PHE GLU MET ALA ASN ARG SEQRES 5 B 98 LEU ALA LYS VAL LEU LYS ILE PRO VAL SER TYR LEU TYR SEQRES 6 B 98 THR PRO GLU ASP ASP LEU ALA GLN ILE ILE LEU THR TRP SEQRES 7 B 98 ASN GLU LEU ASN GLU GLN GLU ARG LYS ARG ILE ASN PHE SEQRES 8 B 98 TYR ILE ARG LYS LYS ALA LYS SEQRES 1 C 21 DA DA DA DC DT DA DA DG DA DA DA DA DT SEQRES 2 C 21 DC DT DT DA DG DC DA DA SEQRES 1 D 21 DT DT DG DC DT DA DA DG DA DT DT DT DT SEQRES 2 D 21 DC DT DT DA DG DT DT DT HET IOD A 101 1 HET IOD A 102 1 HET IOD B 101 1 HET IOD B 102 1 HETNAM IOD IODIDE ION FORMUL 5 IOD 4(I 1-) FORMUL 9 HOH *402(H2 O) HELIX 1 1 LEU A 2 GLY A 14 1 13 HELIX 2 2 SER A 16 ALA A 24 1 9 HELIX 3 3 SER A 30 LYS A 40 1 11 HELIX 4 4 ASP A 46 LYS A 58 1 13 HELIX 5 5 PRO A 60 THR A 66 5 7 HELIX 6 6 GLU A 68 GLU A 80 1 13 HELIX 7 7 ASN A 82 TYR A 92 1 11 HELIX 8 8 LEU B 2 GLY B 14 1 13 HELIX 9 9 SER B 16 ALA B 24 1 9 HELIX 10 10 SER B 30 LYS B 40 1 11 HELIX 11 11 ASP B 46 LYS B 58 1 13 HELIX 12 12 PRO B 60 THR B 66 5 7 HELIX 13 13 GLU B 68 LEU B 81 1 14 HELIX 14 14 ASN B 82 TYR B 92 1 11 SITE 1 AC1 1 HOH A 291 CRYST1 62.340 62.340 158.080 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016041 0.009261 0.000000 0.00000 SCALE2 0.000000 0.018523 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006326 0.00000