data_4JD8
# 
_entry.id   4JD8 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.379 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   4JD8         pdb_00004jd8 10.2210/pdb4jd8/pdb 
NDB   NA2276       ?            ?                   
RCSB  RCSB077899   ?            ?                   
WWPDB D_1000077899 ?            ?                   
# 
_pdbx_database_PDB_obs_spr.id               SPRSDE 
_pdbx_database_PDB_obs_spr.date             2013-04-24 
_pdbx_database_PDB_obs_spr.pdb_id           4JD8 
_pdbx_database_PDB_obs_spr.replace_pdb_id   4E87 
_pdbx_database_PDB_obs_spr.details          ? 
# 
loop_
_pdbx_database_related.db_name 
_pdbx_database_related.db_id 
_pdbx_database_related.details 
_pdbx_database_related.content_type 
PDB 4DX4 'Lower resolution model' unspecified 
PDB 4E7Y .                        unspecified 
PDB 4E87 .                        unspecified 
PDB 4E8S .                        unspecified 
PDB 4E8X .                        unspecified 
PDB 4E95 .                        unspecified 
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        4JD8 
_pdbx_database_status.recvd_initial_deposition_date   2013-02-24 
_pdbx_database_status.deposit_site                    RCSB 
_pdbx_database_status.process_site                    RCSB 
_pdbx_database_status.status_code_sf                  REL 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.SG_entry                        ? 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.methods_development_category    ? 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_nmr_data            ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Cook, D.S.'   1 
'Hall, J.P.'   2 
'Cardin, C.J.' 3 
# 
_citation.id                        primary 
_citation.title                     
'X-ray Crystal Structure of rac-[Ru(phen)2dppz](2+) with d(ATGCAT)2 Shows Enantiomer Orientations and Water Ordering.' 
_citation.journal_abbrev            J.Am.Chem.Soc. 
_citation.journal_volume            135 
_citation.page_first                12652 
_citation.page_last                 12659 
_citation.year                      2013 
_citation.journal_id_ASTM           JACSAT 
_citation.country                   US 
_citation.journal_id_ISSN           0002-7863 
_citation.journal_id_CSD            0004 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   23875832 
_citation.pdbx_database_id_DOI      10.1021/ja403590e 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Hall, J.P.'    1  ? 
primary 'Cook, D.'      2  ? 
primary 'Morte, S.R.'   3  ? 
primary 'McIntyre, P.'  4  ? 
primary 'Buchner, K.'   5  ? 
primary 'Beer, H.'      6  ? 
primary 'Cardin, D.J.'  7  ? 
primary 'Brazier, J.A.' 8  ? 
primary 'Winter, G.'    9  ? 
primary 'Kelly, J.M.'   10 ? 
primary 'Cardin, C.J.'  11 ? 
# 
_cell.entry_id           4JD8 
_cell.length_a           37.550 
_cell.length_b           37.550 
_cell.length_c           54.371 
_cell.angle_alpha        90.00 
_cell.angle_beta         90.00 
_cell.angle_gamma        120.00 
_cell.Z_PDB              12 
_cell.pdbx_unique_axis   ? 
_cell.length_a_esd       ? 
_cell.length_b_esd       ? 
_cell.length_c_esd       ? 
_cell.angle_alpha_esd    ? 
_cell.angle_beta_esd     ? 
_cell.angle_gamma_esd    ? 
# 
_symmetry.entry_id                         4JD8 
_symmetry.space_group_name_H-M             'P 31 2 1' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                152 
_symmetry.space_group_name_Hall            ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer     syn 
;DNA (5'-D(*AP*TP*GP*CP*AP*T)-3')
;
1808.229 2  ? ? ? ? 
2 non-polymer syn 'Delta-Ru(phen)2(dppz) complex'    743.779  1  ? ? ? ? 
3 non-polymer syn 'Lambda-Ru(phen)2(dppz) complex'   743.779  1  ? ? ? ? 
4 non-polymer syn 'POTASSIUM ION'                    39.098   1  ? ? ? ? 
5 water       nat water                              18.015   95 ? ? ? ? 
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polydeoxyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   no 
_entity_poly.pdbx_seq_one_letter_code       '(DA)(DT)(DG)(DC)(DA)(DT)' 
_entity_poly.pdbx_seq_one_letter_code_can   ATGCAT 
_entity_poly.pdbx_strand_id                 A,B 
_entity_poly.pdbx_target_identifier         ? 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1 DA n 
1 2 DT n 
1 3 DG n 
1 4 DC n 
1 5 DA n 
1 6 DT n 
# 
_pdbx_entity_src_syn.entity_id              1 
_pdbx_entity_src_syn.pdbx_src_id            1 
_pdbx_entity_src_syn.pdbx_alt_source_flag   sample 
_pdbx_entity_src_syn.pdbx_beg_seq_num       ? 
_pdbx_entity_src_syn.pdbx_end_seq_num       ? 
_pdbx_entity_src_syn.organism_scientific    ? 
_pdbx_entity_src_syn.organism_common_name   ? 
_pdbx_entity_src_syn.ncbi_taxonomy_id       ? 
_pdbx_entity_src_syn.details                'DNA Purchased from ATDBio' 
# 
_struct_ref.id                         1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    4JD8 
_struct_ref.pdbx_db_accession          4JD8 
_struct_ref.entity_id                  1 
_struct_ref.pdbx_align_begin           ? 
_struct_ref.pdbx_seq_one_letter_code   ATGCAT 
_struct_ref.pdbx_db_isoform            ? 
# 
loop_
_struct_ref_seq.align_id 
_struct_ref_seq.ref_id 
_struct_ref_seq.pdbx_PDB_id_code 
_struct_ref_seq.pdbx_strand_id 
_struct_ref_seq.seq_align_beg 
_struct_ref_seq.pdbx_seq_align_beg_ins_code 
_struct_ref_seq.seq_align_end 
_struct_ref_seq.pdbx_seq_align_end_ins_code 
_struct_ref_seq.pdbx_db_accession 
_struct_ref_seq.db_align_beg 
_struct_ref_seq.pdbx_db_align_beg_ins_code 
_struct_ref_seq.db_align_end 
_struct_ref_seq.pdbx_db_align_end_ins_code 
_struct_ref_seq.pdbx_auth_seq_align_beg 
_struct_ref_seq.pdbx_auth_seq_align_end 
1 1 4JD8 A 1 ? 6 ? 4JD8 1 ? 6 ? 1 6 
2 1 4JD8 B 1 ? 6 ? 4JD8 1 ? 6 ? 1 6 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
0TN non-polymer   . 'Delta-Ru(phen)2(dppz) complex'      ? 'C42 H26 N8 Ru'   743.779 
DA  'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 
DC  'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE"  ? 'C9 H14 N3 O7 P'  307.197 
DG  'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 
DT  'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE"         ? 'C10 H15 N2 O8 P' 322.208 
HOH non-polymer   . WATER                                ? 'H2 O'            18.015  
K   non-polymer   . 'POTASSIUM ION'                      ? 'K 1'             39.098  
RKP non-polymer   . 'Lambda-Ru(phen)2(dppz) complex'     ? 'C42 H26 N8 Ru'   743.779 
# 
_exptl.entry_id          4JD8 
_exptl.method            'X-RAY DIFFRACTION' 
_exptl.crystals_number   1 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_Matthews      3.06 
_exptl_crystal.density_percent_sol   59.80 
_exptl_crystal.description           ? 
_exptl_crystal.F_000                 ? 
_exptl_crystal.preparation           ? 
# 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.method          ? 
_exptl_crystal_grow.temp            293 
_exptl_crystal_grow.temp_details    ? 
_exptl_crystal_grow.pH              6.3 
_exptl_crystal_grow.pdbx_pH_range   ? 
_exptl_crystal_grow.pdbx_details    
;1UL, 1mM D(ATGCAT)2  1UL, 3mM RAC-[RU(PHEN)2DPPZ]2CL 6UL, 40mM SPERMINE, 40mM SODIUM CACODYLATE PH 6.3, 10% MPD (V/V), 80 mM KCL, 20 mM BaCL2, 1ML OF 35% MPD, VAPOR DIFFUSION, SITTING DROP, temperature 293K
;
# 
_diffrn.id                     1 
_diffrn.ambient_temp           100 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_detector.diffrn_id              1 
_diffrn_detector.detector               PIXEL 
_diffrn_detector.type                   'DECTRIS PILATUS 6M' 
_diffrn_detector.pdbx_collection_date   2012-10-07 
_diffrn_detector.details                ? 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   M 
_diffrn_radiation.monochromator                    'DUAL SI (111)' 
_diffrn_radiation.pdbx_diffrn_protocol             'SINGLE WAVELENGTH' 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   0.9795 
_diffrn_radiation_wavelength.wt           1.0 
# 
_diffrn_source.diffrn_id                   1 
_diffrn_source.source                      SYNCHROTRON 
_diffrn_source.type                        'DIAMOND BEAMLINE I02' 
_diffrn_source.pdbx_synchrotron_site       Diamond 
_diffrn_source.pdbx_synchrotron_beamline   I02 
_diffrn_source.pdbx_wavelength             0.9795 
_diffrn_source.pdbx_wavelength_list        ? 
# 
_reflns.pdbx_diffrn_id               1 
_reflns.pdbx_ordinal                 1 
_reflns.entry_id                     4JD8 
_reflns.observed_criterion_sigma_I   1.500 
_reflns.observed_criterion_sigma_F   ? 
_reflns.d_resolution_low             32.520 
_reflns.d_resolution_high            1.160 
_reflns.number_obs                   15712 
_reflns.number_all                   ? 
_reflns.percent_possible_obs         98.6 
_reflns.pdbx_Rmerge_I_obs            ? 
_reflns.pdbx_Rsym_value              ? 
_reflns.pdbx_netI_over_sigmaI        ? 
_reflns.B_iso_Wilson_estimate        ? 
_reflns.pdbx_redundancy              ? 
_reflns.R_free_details               ? 
_reflns.pdbx_chi_squared             ? 
_reflns.pdbx_scaling_rejects         ? 
# 
_reflns_shell.pdbx_diffrn_id         1 
_reflns_shell.pdbx_ordinal           1 
_reflns_shell.d_res_high             1.16 
_reflns_shell.d_res_low              1.18 
_reflns_shell.percent_possible_all   98.8 
_reflns_shell.Rmerge_I_obs           ? 
_reflns_shell.pdbx_Rsym_value        ? 
_reflns_shell.meanI_over_sigI_obs    ? 
_reflns_shell.pdbx_redundancy        ? 
_reflns_shell.percent_possible_obs   ? 
_reflns_shell.number_unique_all      ? 
_reflns_shell.number_measured_all    ? 
_reflns_shell.number_measured_obs    ? 
_reflns_shell.number_unique_obs      ? 
_reflns_shell.pdbx_chi_squared       ? 
# 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.entry_id                                 4JD8 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.ls_number_reflns_obs                     15678 
_refine.ls_number_reflns_all                     15894 
_refine.pdbx_ls_sigma_I                          ? 
_refine.pdbx_ls_sigma_F                          1.340 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.ls_d_res_low                             32.52 
_refine.ls_d_res_high                            1.16 
_refine.ls_percent_reflns_obs                    98.1 
_refine.ls_R_factor_obs                          0.139 
_refine.ls_R_factor_all                          ? 
_refine.ls_R_factor_R_work                       0.138 
_refine.ls_R_factor_R_free                       0.162 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.ls_percent_reflns_R_free                 5.030 
_refine.ls_number_reflns_R_free                  789 
_refine.ls_number_parameters                     ? 
_refine.ls_number_restraints                     ? 
_refine.occupancy_min                            ? 
_refine.occupancy_max                            ? 
_refine.correlation_coeff_Fo_to_Fc               ? 
_refine.correlation_coeff_Fo_to_Fc_free          ? 
_refine.B_iso_mean                               ? 
_refine.aniso_B[1][1]                            ? 
_refine.aniso_B[2][2]                            ? 
_refine.aniso_B[3][3]                            ? 
_refine.aniso_B[1][2]                            ? 
_refine.aniso_B[1][3]                            ? 
_refine.aniso_B[2][3]                            ? 
_refine.solvent_model_details                    'FLAT BULK SOLVENT MODEL' 
_refine.solvent_model_param_ksol                 ? 
_refine.solvent_model_param_bsol                 ? 
_refine.pdbx_solvent_vdw_probe_radii             1.11 
_refine.pdbx_solvent_ion_probe_radii             ? 
_refine.pdbx_solvent_shrinkage_radii             0.90 
_refine.pdbx_ls_cross_valid_method               ? 
_refine.details                                  ? 
_refine.pdbx_starting_model                      4E87 
_refine.pdbx_method_to_determine_struct          'MOLECULAR REPLACEMENT' 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.pdbx_stereochemistry_target_values       ML 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_R_Free_selection_details            ? 
_refine.pdbx_overall_ESU_R                       ? 
_refine.pdbx_overall_ESU_R_Free                  ? 
_refine.overall_SU_ML                            0.110 
_refine.pdbx_overall_phase_error                 18.350 
_refine.overall_SU_B                             ? 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
_refine.ls_redundancy_reflns_obs                 ? 
_refine.overall_SU_R_free                        ? 
_refine.ls_wR_factor_R_free                      ? 
_refine.ls_wR_factor_R_work                      ? 
_refine.overall_FOM_free_R_set                   ? 
_refine.overall_FOM_work_R_set                   ? 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   240 
_refine_hist.pdbx_number_atoms_ligand         103 
_refine_hist.number_atoms_solvent             95 
_refine_hist.number_atoms_total               438 
_refine_hist.d_res_high                       1.16 
_refine_hist.d_res_low                        32.52 
# 
loop_
_refine_ls_restr.type 
_refine_ls_restr.dev_ideal 
_refine_ls_restr.dev_ideal_target 
_refine_ls_restr.weight 
_refine_ls_restr.number 
_refine_ls_restr.pdbx_refine_id 
_refine_ls_restr.pdbx_restraint_function 
f_bond_d           0.015  ? ? 396 'X-RAY DIFFRACTION' ? 
f_angle_d          2.966  ? ? 628 'X-RAY DIFFRACTION' ? 
f_dihedral_angle_d 32.509 ? ? 122 'X-RAY DIFFRACTION' ? 
f_chiral_restr     0.091  ? ? 46  'X-RAY DIFFRACTION' ? 
f_plane_restr      0.029  ? ? 18  'X-RAY DIFFRACTION' ? 
# 
loop_
_refine_ls_shell.pdbx_refine_id 
_refine_ls_shell.pdbx_total_number_of_bins_used 
_refine_ls_shell.d_res_high 
_refine_ls_shell.d_res_low 
_refine_ls_shell.number_reflns_R_work 
_refine_ls_shell.R_factor_R_work 
_refine_ls_shell.percent_reflns_obs 
_refine_ls_shell.R_factor_R_free 
_refine_ls_shell.R_factor_R_free_error 
_refine_ls_shell.percent_reflns_R_free 
_refine_ls_shell.number_reflns_R_free 
_refine_ls_shell.number_reflns_all 
_refine_ls_shell.R_factor_all 
_refine_ls_shell.redundancy_reflns_obs 
_refine_ls_shell.number_reflns_obs 
'X-RAY DIFFRACTION' . 1.1570 1.2295  2420 0.2298 98.00 0.2602 . . 142 . . . . 
'X-RAY DIFFRACTION' . 1.2295 1.3244  2431 0.1852 98.00 0.2273 . . 125 . . . . 
'X-RAY DIFFRACTION' . 1.3244 1.4577  2440 0.1332 98.00 0.1811 . . 134 . . . . 
'X-RAY DIFFRACTION' . 1.4577 1.6687  2488 0.1050 99.00 0.1515 . . 128 . . . . 
'X-RAY DIFFRACTION' . 1.6687 2.1023  2505 0.1230 99.00 0.1346 . . 137 . . . . 
'X-RAY DIFFRACTION' . 2.1023 32.5319 2605 0.1404 97.00 0.1607 . . 123 . . . . 
# 
_struct.entry_id                  4JD8 
_struct.title                     'Racemic-[Ru(phen)2(dppz)]2+] bound to synthetic DNA at high resolution' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        4JD8 
_struct_keywords.pdbx_keywords   DNA 
_struct_keywords.text            'Intercalation, Racemic Ligand-DNA, DNA' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 1 ? 
C N N 2 ? 
D N N 3 ? 
E N N 4 ? 
F N N 5 ? 
G N N 5 ? 
# 
_struct_biol.id        1 
_struct_biol.details   ? 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
metalc1  metalc ? ? B DC 4 OP1 ? ? ? 1_555 E K   . K  ? ? B DC 4   B K   103 1_555 ? ? ? ? ? ? ?            2.705 ? ? 
metalc2  metalc ? ? E K  . K   ? ? ? 1_555 G HOH . O  ? ? B K  103 B HOH 216 1_555 ? ? ? ? ? ? ?            2.884 ? ? 
metalc3  metalc ? ? E K  . K   ? ? ? 1_555 G HOH . O  ? ? B K  103 B HOH 241 1_555 ? ? ? ? ? ? ?            2.986 ? ? 
metalc4  metalc ? ? E K  . K   ? ? ? 1_555 G HOH . O  ? ? B K  103 B HOH 245 1_555 ? ? ? ? ? ? ?            2.605 ? ? 
metalc5  metalc ? ? E K  . K   ? ? ? 1_555 G HOH . O  ? ? B K  103 B HOH 248 1_555 ? ? ? ? ? ? ?            2.791 ? ? 
hydrog1  hydrog ? ? A DA 1 N1  ? ? ? 1_555 B DT  6 N3 ? ? A DA 1   B DT  6   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog2  hydrog ? ? A DA 1 N6  ? ? ? 1_555 B DT  6 O4 ? ? A DA 1   B DT  6   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog3  hydrog ? ? A DT 2 N3  ? ? ? 1_555 B DA  5 N1 ? ? A DT 2   B DA  5   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog4  hydrog ? ? A DT 2 O4  ? ? ? 1_555 B DA  5 N6 ? ? A DT 2   B DA  5   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog5  hydrog ? ? A DG 3 N1  ? ? ? 1_555 B DC  4 N3 ? ? A DG 3   B DC  4   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog6  hydrog ? ? A DG 3 N2  ? ? ? 1_555 B DC  4 O2 ? ? A DG 3   B DC  4   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog7  hydrog ? ? A DG 3 O6  ? ? ? 1_555 B DC  4 N4 ? ? A DG 3   B DC  4   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog8  hydrog ? ? A DC 4 N3  ? ? ? 1_555 B DG  3 N1 ? ? A DC 4   B DG  3   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog9  hydrog ? ? A DC 4 N4  ? ? ? 1_555 B DG  3 O6 ? ? A DC 4   B DG  3   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog10 hydrog ? ? A DC 4 O2  ? ? ? 1_555 B DG  3 N2 ? ? A DC 4   B DG  3   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog11 hydrog ? ? A DA 5 N1  ? ? ? 1_555 B DT  2 N3 ? ? A DA 5   B DT  2   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog12 hydrog ? ? A DA 5 N6  ? ? ? 1_555 B DT  2 O4 ? ? A DA 5   B DT  2   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog13 hydrog ? ? A DT 6 N3  ? ? ? 1_555 B DA  1 N1 ? ? A DT 6   B DA  1   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog14 hydrog ? ? A DT 6 O4  ? ? ? 1_555 B DA  1 N6 ? ? A DT 6   B DA  1   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
# 
loop_
_struct_conn_type.id 
_struct_conn_type.criteria 
_struct_conn_type.reference 
metalc ? ? 
hydrog ? ? 
# 
loop_
_struct_site.id 
_struct_site.pdbx_evidence_code 
_struct_site.pdbx_auth_asym_id 
_struct_site.pdbx_auth_comp_id 
_struct_site.pdbx_auth_seq_id 
_struct_site.pdbx_auth_ins_code 
_struct_site.pdbx_num_residues 
_struct_site.details 
AC1 Software B 0TN 101 ? 8  'BINDING SITE FOR RESIDUE 0TN B 101' 
AC2 Software B RKP 102 ? 8  'BINDING SITE FOR RESIDUE RKP B 102' 
AC3 Software B K   103 ? 10 'BINDING SITE FOR RESIDUE K B 103'   
# 
loop_
_struct_site_gen.id 
_struct_site_gen.site_id 
_struct_site_gen.pdbx_num_res 
_struct_site_gen.label_comp_id 
_struct_site_gen.label_asym_id 
_struct_site_gen.label_seq_id 
_struct_site_gen.pdbx_auth_ins_code 
_struct_site_gen.auth_comp_id 
_struct_site_gen.auth_asym_id 
_struct_site_gen.auth_seq_id 
_struct_site_gen.label_atom_id 
_struct_site_gen.label_alt_id 
_struct_site_gen.symmetry 
_struct_site_gen.details 
1  AC1 8  DT  A 2 ? DT  A 2   . ? 1_555 ? 
2  AC1 8  DG  A 3 ? DG  A 3   . ? 1_555 ? 
3  AC1 8  DC  A 4 ? DC  A 4   . ? 1_555 ? 
4  AC1 8  DT  A 6 ? DT  A 6   . ? 5_564 ? 
5  AC1 8  DA  B 1 ? DA  B 1   . ? 5_564 ? 
6  AC1 8  DC  B 4 ? DC  B 4   . ? 1_555 ? 
7  AC1 8  DA  B 5 ? DA  B 5   . ? 1_555 ? 
8  AC1 8  DT  B 6 ? DT  B 6   . ? 1_555 ? 
9  AC2 8  DA  A 1 ? DA  A 1   . ? 2_565 ? 
10 AC2 8  DC  A 4 ? DC  A 4   . ? 1_555 ? 
11 AC2 8  DA  A 5 ? DA  A 5   . ? 1_555 ? 
12 AC2 8  DT  A 6 ? DT  A 6   . ? 1_555 ? 
13 AC2 8  DT  B 2 ? DT  B 2   . ? 1_555 ? 
14 AC2 8  DG  B 3 ? DG  B 3   . ? 1_555 ? 
15 AC2 8  DA  B 5 ? DA  B 5   . ? 2_565 ? 
16 AC2 8  DT  B 6 ? DT  B 6   . ? 2_565 ? 
17 AC3 10 DC  B 4 ? DC  B 4   . ? 1_555 ? 
18 AC3 10 DC  B 4 ? DC  B 4   . ? 5_554 ? 
19 AC3 10 HOH G . ? HOH B 216 . ? 1_555 ? 
20 AC3 10 HOH G . ? HOH B 216 . ? 5_554 ? 
21 AC3 10 HOH G . ? HOH B 241 . ? 1_555 ? 
22 AC3 10 HOH G . ? HOH B 241 . ? 5_554 ? 
23 AC3 10 HOH G . ? HOH B 245 . ? 1_555 ? 
24 AC3 10 HOH G . ? HOH B 245 . ? 5_554 ? 
25 AC3 10 HOH G . ? HOH B 248 . ? 5_554 ? 
26 AC3 10 HOH G . ? HOH B 248 . ? 1_555 ? 
# 
_database_PDB_matrix.entry_id          4JD8 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_atom_sites.entry_id                    4JD8 
_atom_sites.fract_transf_matrix[1][1]   0.026631 
_atom_sites.fract_transf_matrix[1][2]   0.015376 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.030751 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.018392 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
C  
H  
K  
N  
O  
P  
RU 
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1 DA 1 1 1 DA DA A . n 
A 1 2 DT 2 2 2 DT DT A . n 
A 1 3 DG 3 3 3 DG DG A . n 
A 1 4 DC 4 4 4 DC DC A . n 
A 1 5 DA 5 5 5 DA DA A . n 
A 1 6 DT 6 6 6 DT DT A . n 
B 1 1 DA 1 1 1 DA DA B . n 
B 1 2 DT 2 2 2 DT DT B . n 
B 1 3 DG 3 3 3 DG DG B . n 
B 1 4 DC 4 4 4 DC DC B . n 
B 1 5 DA 5 5 5 DA DA B . n 
B 1 6 DT 6 6 6 DT DT B . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
C 2 0TN 1  101 1   0TN 0TN B . 
D 3 RKP 1  102 1   RKP RKP B . 
E 4 K   1  103 2   K   K   B . 
F 5 HOH 1  101 3   HOH HOH A . 
F 5 HOH 2  102 4   HOH HOH A . 
F 5 HOH 3  103 6   HOH HOH A . 
F 5 HOH 4  104 8   HOH HOH A . 
F 5 HOH 5  105 11  HOH HOH A . 
F 5 HOH 6  106 15  HOH HOH A . 
F 5 HOH 7  107 17  HOH HOH A . 
F 5 HOH 8  108 18  HOH HOH A . 
F 5 HOH 9  109 19  HOH HOH A . 
F 5 HOH 10 110 21  HOH HOH A . 
F 5 HOH 11 111 22  HOH HOH A . 
F 5 HOH 12 112 25  HOH HOH A . 
F 5 HOH 13 113 28  HOH HOH A . 
F 5 HOH 14 114 29  HOH HOH A . 
F 5 HOH 15 115 30  HOH HOH A . 
F 5 HOH 16 116 31  HOH HOH A . 
F 5 HOH 17 117 32  HOH HOH A . 
F 5 HOH 18 118 36  HOH HOH A . 
F 5 HOH 19 119 38  HOH HOH A . 
F 5 HOH 20 120 39  HOH HOH A . 
F 5 HOH 21 121 40  HOH HOH A . 
F 5 HOH 22 122 42  HOH HOH A . 
F 5 HOH 23 123 44  HOH HOH A . 
F 5 HOH 24 124 45  HOH HOH A . 
F 5 HOH 25 125 47  HOH HOH A . 
F 5 HOH 26 126 50  HOH HOH A . 
F 5 HOH 27 127 51  HOH HOH A . 
F 5 HOH 28 128 53  HOH HOH A . 
F 5 HOH 29 129 54  HOH HOH A . 
F 5 HOH 30 130 57  HOH HOH A . 
F 5 HOH 31 131 59  HOH HOH A . 
F 5 HOH 32 132 61  HOH HOH A . 
F 5 HOH 33 133 64  HOH HOH A . 
F 5 HOH 34 134 66  HOH HOH A . 
F 5 HOH 35 135 71  HOH HOH A . 
F 5 HOH 36 136 73  HOH HOH A . 
F 5 HOH 37 137 77  HOH HOH A . 
F 5 HOH 38 138 78  HOH HOH A . 
F 5 HOH 39 139 79  HOH HOH A . 
F 5 HOH 40 140 82  HOH HOH A . 
F 5 HOH 41 141 84  HOH HOH A . 
F 5 HOH 42 142 85  HOH HOH A . 
G 5 HOH 1  201 1   HOH HOH B . 
G 5 HOH 2  202 2   HOH HOH B . 
G 5 HOH 3  203 5   HOH HOH B . 
G 5 HOH 4  204 7   HOH HOH B . 
G 5 HOH 5  205 9   HOH HOH B . 
G 5 HOH 6  206 10  HOH HOH B . 
G 5 HOH 7  207 12  HOH HOH B . 
G 5 HOH 8  208 13  HOH HOH B . 
G 5 HOH 9  209 14  HOH HOH B . 
G 5 HOH 10 210 16  HOH HOH B . 
G 5 HOH 11 211 20  HOH HOH B . 
G 5 HOH 12 212 23  HOH HOH B . 
G 5 HOH 13 213 24  HOH HOH B . 
G 5 HOH 14 214 26  HOH HOH B . 
G 5 HOH 15 215 27  HOH HOH B . 
G 5 HOH 16 216 33  HOH HOH B . 
G 5 HOH 17 217 34  HOH HOH B . 
G 5 HOH 18 218 35  HOH HOH B . 
G 5 HOH 19 219 37  HOH HOH B . 
G 5 HOH 20 220 41  HOH HOH B . 
G 5 HOH 21 221 43  HOH HOH B . 
G 5 HOH 22 222 46  HOH HOH B . 
G 5 HOH 23 223 48  HOH HOH B . 
G 5 HOH 24 224 49  HOH HOH B . 
G 5 HOH 25 225 52  HOH HOH B . 
G 5 HOH 26 226 55  HOH HOH B . 
G 5 HOH 27 227 56  HOH HOH B . 
G 5 HOH 28 228 58  HOH HOH B . 
G 5 HOH 29 229 60  HOH HOH B . 
G 5 HOH 30 230 62  HOH HOH B . 
G 5 HOH 31 231 63  HOH HOH B . 
G 5 HOH 32 232 65  HOH HOH B . 
G 5 HOH 33 233 67  HOH HOH B . 
G 5 HOH 34 234 68  HOH HOH B . 
G 5 HOH 35 235 69  HOH HOH B . 
G 5 HOH 36 236 70  HOH HOH B . 
G 5 HOH 37 237 72  HOH HOH B . 
G 5 HOH 38 238 74  HOH HOH B . 
G 5 HOH 39 239 75  HOH HOH B . 
G 5 HOH 40 240 76  HOH HOH B . 
G 5 HOH 41 241 80  HOH HOH B . 
G 5 HOH 42 242 81  HOH HOH B . 
G 5 HOH 43 243 83  HOH HOH B . 
G 5 HOH 44 244 86  HOH HOH B . 
G 5 HOH 45 245 87  HOH HOH B . 
G 5 HOH 46 246 88  HOH HOH B . 
G 5 HOH 47 247 89  HOH HOH B . 
G 5 HOH 48 248 248 HOH HOH B . 
G 5 HOH 49 249 91  HOH HOH B . 
G 5 HOH 50 250 92  HOH HOH B . 
G 5 HOH 51 251 93  HOH HOH B . 
G 5 HOH 52 252 94  HOH HOH B . 
G 5 HOH 53 253 95  HOH HOH B . 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_defined_assembly 
_pdbx_struct_assembly.method_details       ? 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C,D,E,F,G 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
loop_
_pdbx_struct_special_symmetry.id 
_pdbx_struct_special_symmetry.PDB_model_num 
_pdbx_struct_special_symmetry.auth_asym_id 
_pdbx_struct_special_symmetry.auth_comp_id 
_pdbx_struct_special_symmetry.auth_seq_id 
_pdbx_struct_special_symmetry.PDB_ins_code 
_pdbx_struct_special_symmetry.label_asym_id 
_pdbx_struct_special_symmetry.label_comp_id 
_pdbx_struct_special_symmetry.label_seq_id 
1 1 B K   103 ? E K   . 
2 1 B HOH 248 ? G HOH . 
# 
loop_
_pdbx_struct_conn_angle.id 
_pdbx_struct_conn_angle.ptnr1_label_atom_id 
_pdbx_struct_conn_angle.ptnr1_label_alt_id 
_pdbx_struct_conn_angle.ptnr1_label_asym_id 
_pdbx_struct_conn_angle.ptnr1_label_comp_id 
_pdbx_struct_conn_angle.ptnr1_label_seq_id 
_pdbx_struct_conn_angle.ptnr1_auth_atom_id 
_pdbx_struct_conn_angle.ptnr1_auth_asym_id 
_pdbx_struct_conn_angle.ptnr1_auth_comp_id 
_pdbx_struct_conn_angle.ptnr1_auth_seq_id 
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr1_symmetry 
_pdbx_struct_conn_angle.ptnr2_label_atom_id 
_pdbx_struct_conn_angle.ptnr2_label_alt_id 
_pdbx_struct_conn_angle.ptnr2_label_asym_id 
_pdbx_struct_conn_angle.ptnr2_label_comp_id 
_pdbx_struct_conn_angle.ptnr2_label_seq_id 
_pdbx_struct_conn_angle.ptnr2_auth_atom_id 
_pdbx_struct_conn_angle.ptnr2_auth_asym_id 
_pdbx_struct_conn_angle.ptnr2_auth_comp_id 
_pdbx_struct_conn_angle.ptnr2_auth_seq_id 
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr2_symmetry 
_pdbx_struct_conn_angle.ptnr3_label_atom_id 
_pdbx_struct_conn_angle.ptnr3_label_alt_id 
_pdbx_struct_conn_angle.ptnr3_label_asym_id 
_pdbx_struct_conn_angle.ptnr3_label_comp_id 
_pdbx_struct_conn_angle.ptnr3_label_seq_id 
_pdbx_struct_conn_angle.ptnr3_auth_atom_id 
_pdbx_struct_conn_angle.ptnr3_auth_asym_id 
_pdbx_struct_conn_angle.ptnr3_auth_comp_id 
_pdbx_struct_conn_angle.ptnr3_auth_seq_id 
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr3_symmetry 
_pdbx_struct_conn_angle.value 
_pdbx_struct_conn_angle.value_esd 
1  OP1 ? B DC  4 ? B DC  4   ? 1_555 K ? E K . ? B K 103 ? 1_555 O ? G HOH . ? B HOH 216 ? 1_555 83.5  ? 
2  OP1 ? B DC  4 ? B DC  4   ? 1_555 K ? E K . ? B K 103 ? 1_555 O ? G HOH . ? B HOH 241 ? 1_555 70.8  ? 
3  O   ? G HOH . ? B HOH 216 ? 1_555 K ? E K . ? B K 103 ? 1_555 O ? G HOH . ? B HOH 241 ? 1_555 63.5  ? 
4  OP1 ? B DC  4 ? B DC  4   ? 1_555 K ? E K . ? B K 103 ? 1_555 O ? G HOH . ? B HOH 245 ? 1_555 80.0  ? 
5  O   ? G HOH . ? B HOH 216 ? 1_555 K ? E K . ? B K 103 ? 1_555 O ? G HOH . ? B HOH 245 ? 1_555 72.7  ? 
6  O   ? G HOH . ? B HOH 241 ? 1_555 K ? E K . ? B K 103 ? 1_555 O ? G HOH . ? B HOH 245 ? 1_555 129.1 ? 
7  OP1 ? B DC  4 ? B DC  4   ? 1_555 K ? E K . ? B K 103 ? 1_555 O ? G HOH . ? B HOH 248 ? 1_555 142.7 ? 
8  O   ? G HOH . ? B HOH 216 ? 1_555 K ? E K . ? B K 103 ? 1_555 O ? G HOH . ? B HOH 248 ? 1_555 70.5  ? 
9  O   ? G HOH . ? B HOH 241 ? 1_555 K ? E K . ? B K 103 ? 1_555 O ? G HOH . ? B HOH 248 ? 1_555 116.8 ? 
10 O   ? G HOH . ? B HOH 245 ? 1_555 K ? E K . ? B K 103 ? 1_555 O ? G HOH . ? B HOH 248 ? 1_555 67.3  ? 
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 2013-04-24 
2 'Structure model' 1 1 2013-09-18 
3 'Structure model' 1 2 2023-09-20 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Database references'    
2 3 'Structure model' 'Data collection'        
3 3 'Structure model' 'Database references'    
4 3 'Structure model' 'Derived calculations'   
5 3 'Structure model' 'Refinement description' 
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 3 'Structure model' chem_comp_atom                
2 3 'Structure model' chem_comp_bond                
3 3 'Structure model' database_2                    
4 3 'Structure model' pdbx_initial_refinement_model 
5 3 'Structure model' pdbx_struct_conn_angle        
6 3 'Structure model' struct_conn                   
7 3 'Structure model' struct_site                   
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1  3 'Structure model' '_database_2.pdbx_DOI'                        
2  3 'Structure model' '_database_2.pdbx_database_accession'         
3  3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id'  
4  3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'   
5  3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 
6  3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 
7  3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 
8  3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id'  
9  3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id'  
10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'   
11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 
12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 
13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 
14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id'  
15 3 'Structure model' '_pdbx_struct_conn_angle.value'               
16 3 'Structure model' '_struct_conn.pdbx_dist_value'                
17 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id'             
18 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id'              
19 3 'Structure model' '_struct_conn.ptnr1_label_asym_id'            
20 3 'Structure model' '_struct_conn.ptnr1_label_atom_id'            
21 3 'Structure model' '_struct_conn.ptnr1_label_comp_id'            
22 3 'Structure model' '_struct_conn.ptnr1_label_seq_id'             
23 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id'             
24 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id'              
25 3 'Structure model' '_struct_conn.ptnr2_label_asym_id'            
26 3 'Structure model' '_struct_conn.ptnr2_label_atom_id'            
27 3 'Structure model' '_struct_conn.ptnr2_label_comp_id'            
28 3 'Structure model' '_struct_site.pdbx_auth_asym_id'              
29 3 'Structure model' '_struct_site.pdbx_auth_comp_id'              
30 3 'Structure model' '_struct_site.pdbx_auth_seq_id'               
# 
loop_
_software.name 
_software.classification 
_software.version 
_software.citation_id 
_software.pdbx_ordinal 
GDA     'data collection' .                             ? 1 
PHASER  phasing           .                             ? 2 
PHENIX  refinement        '(phenix.refine: 1.8.1_1168)' ? 3 
MOSFLM  'data reduction'  .                             ? 4 
Aimless 'data scaling'    .                             ? 5 
# 
loop_
_pdbx_validate_close_contact.id 
_pdbx_validate_close_contact.PDB_model_num 
_pdbx_validate_close_contact.auth_atom_id_1 
_pdbx_validate_close_contact.auth_asym_id_1 
_pdbx_validate_close_contact.auth_comp_id_1 
_pdbx_validate_close_contact.auth_seq_id_1 
_pdbx_validate_close_contact.PDB_ins_code_1 
_pdbx_validate_close_contact.label_alt_id_1 
_pdbx_validate_close_contact.auth_atom_id_2 
_pdbx_validate_close_contact.auth_asym_id_2 
_pdbx_validate_close_contact.auth_comp_id_2 
_pdbx_validate_close_contact.auth_seq_id_2 
_pdbx_validate_close_contact.PDB_ins_code_2 
_pdbx_validate_close_contact.label_alt_id_2 
_pdbx_validate_close_contact.dist 
1 1 O B HOH 240 ? ? O B HOH 243 ? ? 1.61 
2 1 O A HOH 110 ? ? O A HOH 141 ? ? 1.87 
# 
_pdbx_validate_symm_contact.id                1 
_pdbx_validate_symm_contact.PDB_model_num     1 
_pdbx_validate_symm_contact.auth_atom_id_1    O 
_pdbx_validate_symm_contact.auth_asym_id_1    A 
_pdbx_validate_symm_contact.auth_comp_id_1    HOH 
_pdbx_validate_symm_contact.auth_seq_id_1     137 
_pdbx_validate_symm_contact.PDB_ins_code_1    ? 
_pdbx_validate_symm_contact.label_alt_id_1    ? 
_pdbx_validate_symm_contact.site_symmetry_1   1_555 
_pdbx_validate_symm_contact.auth_atom_id_2    O 
_pdbx_validate_symm_contact.auth_asym_id_2    B 
_pdbx_validate_symm_contact.auth_comp_id_2    HOH 
_pdbx_validate_symm_contact.auth_seq_id_2     243 
_pdbx_validate_symm_contact.PDB_ins_code_2    ? 
_pdbx_validate_symm_contact.label_alt_id_2    ? 
_pdbx_validate_symm_contact.site_symmetry_2   3_454 
_pdbx_validate_symm_contact.dist              2.08 
# 
loop_
_pdbx_validate_rmsd_angle.id 
_pdbx_validate_rmsd_angle.PDB_model_num 
_pdbx_validate_rmsd_angle.auth_atom_id_1 
_pdbx_validate_rmsd_angle.auth_asym_id_1 
_pdbx_validate_rmsd_angle.auth_comp_id_1 
_pdbx_validate_rmsd_angle.auth_seq_id_1 
_pdbx_validate_rmsd_angle.PDB_ins_code_1 
_pdbx_validate_rmsd_angle.label_alt_id_1 
_pdbx_validate_rmsd_angle.auth_atom_id_2 
_pdbx_validate_rmsd_angle.auth_asym_id_2 
_pdbx_validate_rmsd_angle.auth_comp_id_2 
_pdbx_validate_rmsd_angle.auth_seq_id_2 
_pdbx_validate_rmsd_angle.PDB_ins_code_2 
_pdbx_validate_rmsd_angle.label_alt_id_2 
_pdbx_validate_rmsd_angle.auth_atom_id_3 
_pdbx_validate_rmsd_angle.auth_asym_id_3 
_pdbx_validate_rmsd_angle.auth_comp_id_3 
_pdbx_validate_rmsd_angle.auth_seq_id_3 
_pdbx_validate_rmsd_angle.PDB_ins_code_3 
_pdbx_validate_rmsd_angle.label_alt_id_3 
_pdbx_validate_rmsd_angle.angle_value 
_pdbx_validate_rmsd_angle.angle_target_value 
_pdbx_validate_rmsd_angle.angle_deviation 
_pdbx_validate_rmsd_angle.angle_standard_deviation 
_pdbx_validate_rmsd_angle.linker_flag 
1 1 "O5'" A DT 2 ? ? P     A DT 2 ? ? OP2   A DT 2 ? ? 98.33  105.70 -7.37 0.90 N 
2 1 "O5'" A DT 6 ? ? P     A DT 6 ? ? OP1   A DT 6 ? ? 121.72 110.70 11.02 1.20 N 
3 1 "O5'" A DT 6 ? ? P     A DT 6 ? ? OP2   A DT 6 ? ? 97.42  105.70 -8.28 0.90 N 
4 1 "C1'" A DT 6 ? ? "O4'" A DT 6 ? ? "C4'" A DT 6 ? ? 102.15 110.10 -7.95 1.00 N 
5 1 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1    A DT 6 ? ? 111.57 108.30 3.27  0.30 N 
6 1 "O4'" B DC 4 ? ? "C1'" B DC 4 ? ? N1    B DC 4 ? ? 112.39 108.30 4.09  0.30 N 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
0TN RU     RU N N 1   
0TN C1     C  Y N 2   
0TN N1     N  Y N 3   
0TN C2     C  Y N 4   
0TN N2     N  Y N 5   
0TN C3     C  Y N 6   
0TN N3     N  Y N 7   
0TN C4     C  Y N 8   
0TN N4     N  Y N 9   
0TN C5     C  Y N 10  
0TN N5     N  Y N 11  
0TN C6     C  Y N 12  
0TN C7     C  Y N 13  
0TN C8     C  Y N 14  
0TN N8     N  Y N 15  
0TN C9     C  Y N 16  
0TN N9     N  Y N 17  
0TN C10    C  Y N 18  
0TN C11    C  Y N 19  
0TN C12    C  Y N 20  
0TN N12    N  Y N 21  
0TN C13    C  Y N 22  
0TN C14    C  Y N 23  
0TN C15    C  Y N 24  
0TN C16    C  Y N 25  
0TN C17    C  Y N 26  
0TN C18    C  Y N 27  
0TN C19    C  Y N 28  
0TN C20    C  Y N 29  
0TN C21    C  Y N 30  
0TN C22    C  Y N 31  
0TN C23    C  Y N 32  
0TN C24    C  Y N 33  
0TN C25    C  Y N 34  
0TN C26    C  Y N 35  
0TN C27    C  Y N 36  
0TN C28    C  Y N 37  
0TN C29    C  Y N 38  
0TN C30    C  Y N 39  
0TN C31    C  Y N 40  
0TN C32    C  Y N 41  
0TN C33    C  Y N 42  
0TN C34    C  Y N 43  
0TN C35    C  Y N 44  
0TN C36    C  Y N 45  
0TN C37    C  Y N 46  
0TN C38    C  Y N 47  
0TN C41    C  Y N 48  
0TN C42    C  Y N 49  
0TN C43    C  Y N 50  
0TN C44    C  Y N 51  
0TN H1     H  N N 52  
0TN H2     H  N N 53  
0TN H3     H  N N 54  
0TN H4     H  N N 55  
0TN H5     H  N N 56  
0TN H6     H  N N 57  
0TN H7     H  N N 58  
0TN H8     H  N N 59  
0TN H9     H  N N 60  
0TN H10    H  N N 61  
0TN H11    H  N N 62  
0TN H12    H  N N 63  
0TN H13    H  N N 64  
0TN H14    H  N N 65  
0TN H15    H  N N 66  
0TN H16    H  N N 67  
0TN H17    H  N N 68  
0TN H18    H  N N 69  
0TN H19    H  N N 70  
0TN H20    H  N N 71  
0TN H21    H  N N 72  
0TN H22    H  N N 73  
0TN H23    H  N N 74  
0TN H24    H  N N 75  
0TN H25    H  N N 76  
0TN H26    H  N N 77  
DA  OP3    O  N N 78  
DA  P      P  N N 79  
DA  OP1    O  N N 80  
DA  OP2    O  N N 81  
DA  "O5'"  O  N N 82  
DA  "C5'"  C  N N 83  
DA  "C4'"  C  N R 84  
DA  "O4'"  O  N N 85  
DA  "C3'"  C  N S 86  
DA  "O3'"  O  N N 87  
DA  "C2'"  C  N N 88  
DA  "C1'"  C  N R 89  
DA  N9     N  Y N 90  
DA  C8     C  Y N 91  
DA  N7     N  Y N 92  
DA  C5     C  Y N 93  
DA  C6     C  Y N 94  
DA  N6     N  N N 95  
DA  N1     N  Y N 96  
DA  C2     C  Y N 97  
DA  N3     N  Y N 98  
DA  C4     C  Y N 99  
DA  HOP3   H  N N 100 
DA  HOP2   H  N N 101 
DA  "H5'"  H  N N 102 
DA  "H5''" H  N N 103 
DA  "H4'"  H  N N 104 
DA  "H3'"  H  N N 105 
DA  "HO3'" H  N N 106 
DA  "H2'"  H  N N 107 
DA  "H2''" H  N N 108 
DA  "H1'"  H  N N 109 
DA  H8     H  N N 110 
DA  H61    H  N N 111 
DA  H62    H  N N 112 
DA  H2     H  N N 113 
DC  OP3    O  N N 114 
DC  P      P  N N 115 
DC  OP1    O  N N 116 
DC  OP2    O  N N 117 
DC  "O5'"  O  N N 118 
DC  "C5'"  C  N N 119 
DC  "C4'"  C  N R 120 
DC  "O4'"  O  N N 121 
DC  "C3'"  C  N S 122 
DC  "O3'"  O  N N 123 
DC  "C2'"  C  N N 124 
DC  "C1'"  C  N R 125 
DC  N1     N  N N 126 
DC  C2     C  N N 127 
DC  O2     O  N N 128 
DC  N3     N  N N 129 
DC  C4     C  N N 130 
DC  N4     N  N N 131 
DC  C5     C  N N 132 
DC  C6     C  N N 133 
DC  HOP3   H  N N 134 
DC  HOP2   H  N N 135 
DC  "H5'"  H  N N 136 
DC  "H5''" H  N N 137 
DC  "H4'"  H  N N 138 
DC  "H3'"  H  N N 139 
DC  "HO3'" H  N N 140 
DC  "H2'"  H  N N 141 
DC  "H2''" H  N N 142 
DC  "H1'"  H  N N 143 
DC  H41    H  N N 144 
DC  H42    H  N N 145 
DC  H5     H  N N 146 
DC  H6     H  N N 147 
DG  OP3    O  N N 148 
DG  P      P  N N 149 
DG  OP1    O  N N 150 
DG  OP2    O  N N 151 
DG  "O5'"  O  N N 152 
DG  "C5'"  C  N N 153 
DG  "C4'"  C  N R 154 
DG  "O4'"  O  N N 155 
DG  "C3'"  C  N S 156 
DG  "O3'"  O  N N 157 
DG  "C2'"  C  N N 158 
DG  "C1'"  C  N R 159 
DG  N9     N  Y N 160 
DG  C8     C  Y N 161 
DG  N7     N  Y N 162 
DG  C5     C  Y N 163 
DG  C6     C  N N 164 
DG  O6     O  N N 165 
DG  N1     N  N N 166 
DG  C2     C  N N 167 
DG  N2     N  N N 168 
DG  N3     N  N N 169 
DG  C4     C  Y N 170 
DG  HOP3   H  N N 171 
DG  HOP2   H  N N 172 
DG  "H5'"  H  N N 173 
DG  "H5''" H  N N 174 
DG  "H4'"  H  N N 175 
DG  "H3'"  H  N N 176 
DG  "HO3'" H  N N 177 
DG  "H2'"  H  N N 178 
DG  "H2''" H  N N 179 
DG  "H1'"  H  N N 180 
DG  H8     H  N N 181 
DG  H1     H  N N 182 
DG  H21    H  N N 183 
DG  H22    H  N N 184 
DT  OP3    O  N N 185 
DT  P      P  N N 186 
DT  OP1    O  N N 187 
DT  OP2    O  N N 188 
DT  "O5'"  O  N N 189 
DT  "C5'"  C  N N 190 
DT  "C4'"  C  N R 191 
DT  "O4'"  O  N N 192 
DT  "C3'"  C  N S 193 
DT  "O3'"  O  N N 194 
DT  "C2'"  C  N N 195 
DT  "C1'"  C  N R 196 
DT  N1     N  N N 197 
DT  C2     C  N N 198 
DT  O2     O  N N 199 
DT  N3     N  N N 200 
DT  C4     C  N N 201 
DT  O4     O  N N 202 
DT  C5     C  N N 203 
DT  C7     C  N N 204 
DT  C6     C  N N 205 
DT  HOP3   H  N N 206 
DT  HOP2   H  N N 207 
DT  "H5'"  H  N N 208 
DT  "H5''" H  N N 209 
DT  "H4'"  H  N N 210 
DT  "H3'"  H  N N 211 
DT  "HO3'" H  N N 212 
DT  "H2'"  H  N N 213 
DT  "H2''" H  N N 214 
DT  "H1'"  H  N N 215 
DT  H3     H  N N 216 
DT  H71    H  N N 217 
DT  H72    H  N N 218 
DT  H73    H  N N 219 
DT  H6     H  N N 220 
HOH O      O  N N 221 
HOH H1     H  N N 222 
HOH H2     H  N N 223 
K   K      K  N N 224 
RKP RU     RU N N 225 
RKP C1     C  Y N 226 
RKP N1     N  Y N 227 
RKP C2     C  Y N 228 
RKP N2     N  Y N 229 
RKP C3     C  Y N 230 
RKP N3     N  Y N 231 
RKP C4     C  Y N 232 
RKP N4     N  Y N 233 
RKP C5     C  Y N 234 
RKP N5     N  Y N 235 
RKP C6     C  Y N 236 
RKP C7     C  Y N 237 
RKP C8     C  Y N 238 
RKP N8     N  Y N 239 
RKP C9     C  Y N 240 
RKP N9     N  Y N 241 
RKP C10    C  Y N 242 
RKP C11    C  Y N 243 
RKP C12    C  Y N 244 
RKP N12    N  Y N 245 
RKP C13    C  Y N 246 
RKP C14    C  Y N 247 
RKP C15    C  Y N 248 
RKP C16    C  Y N 249 
RKP C17    C  Y N 250 
RKP C18    C  Y N 251 
RKP C19    C  Y N 252 
RKP C20    C  Y N 253 
RKP C21    C  Y N 254 
RKP C22    C  Y N 255 
RKP C23    C  Y N 256 
RKP C24    C  Y N 257 
RKP C25    C  Y N 258 
RKP C26    C  Y N 259 
RKP C27    C  Y N 260 
RKP C28    C  Y N 261 
RKP C29    C  Y N 262 
RKP C30    C  Y N 263 
RKP C31    C  Y N 264 
RKP C32    C  Y N 265 
RKP C33    C  Y N 266 
RKP C34    C  Y N 267 
RKP C35    C  Y N 268 
RKP C36    C  Y N 269 
RKP C37    C  Y N 270 
RKP C38    C  Y N 271 
RKP C41    C  Y N 272 
RKP C42    C  Y N 273 
RKP C43    C  Y N 274 
RKP C44    C  Y N 275 
RKP H2     H  N N 276 
RKP H3     H  N N 277 
RKP H4     H  N N 278 
RKP H9     H  N N 279 
RKP H11    H  N N 280 
RKP H12    H  N N 281 
RKP H14    H  N N 282 
RKP H16    H  N N 283 
RKP H17    H  N N 284 
RKP H18    H  N N 285 
RKP H20    H  N N 286 
RKP H21    H  N N 287 
RKP H23    H  N N 288 
RKP H24    H  N N 289 
RKP H27    H  N N 290 
RKP H28    H  N N 291 
RKP H30    H  N N 292 
RKP H31    H  N N 293 
RKP H33    H  N N 294 
RKP H34    H  N N 295 
RKP H37    H  N N 296 
RKP H38    H  N N 297 
RKP H41    H  N N 298 
RKP H42    H  N N 299 
RKP H43    H  N N 300 
RKP H44    H  N N 301 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
0TN C18   C14    doub Y N 1   
0TN C18   C17    sing Y N 2   
0TN C14   C13    sing Y N 3   
0TN C17   C16    doub Y N 4   
0TN C13   N4     doub Y N 5   
0TN C13   C15    sing Y N 6   
0TN C44   C37    doub Y N 7   
0TN C44   C35    sing Y N 8   
0TN C34   C35    doub Y N 9   
0TN C34   C33    sing Y N 10  
0TN N4    C7     sing Y N 11  
0TN C16   C15    sing Y N 12  
0TN C37   C38    sing Y N 13  
0TN C9    C11    doub Y N 14  
0TN C9    C8     sing Y N 15  
0TN C35   C36    sing Y N 16  
0TN C33   C32    doub Y N 17  
0TN C15   N3     doub Y N 18  
0TN C11   C12    sing Y N 19  
0TN C7    C8     doub Y N 20  
0TN C7    C6     sing Y N 21  
0TN C8    C10    sing Y N 22  
0TN N3    C6     sing Y N 23  
0TN C38   N12    doub Y N 24  
0TN C36   N12    sing Y N 25  
0TN C36   C29    doub Y N 26  
0TN C32   C29    sing Y N 27  
0TN C32   C43    sing Y N 28  
0TN C12   N1     doub Y N 29  
0TN C6    C5     doub Y N 30  
0TN N12   RU     sing N N 31  
0TN C10   N1     sing Y N 32  
0TN C10   C1     doub Y N 33  
0TN C29   N9     sing Y N 34  
0TN C43   C31    doub Y N 35  
0TN N1    RU     sing N N 36  
0TN C5    C1     sing Y N 37  
0TN C5    C4     sing Y N 38  
0TN C1    N2     sing Y N 39  
0TN N9    RU     sing N N 40  
0TN N9    C30    doub Y N 41  
0TN C4    C3     doub Y N 42  
0TN C31   C30    sing Y N 43  
0TN RU    N2     sing N N 44  
0TN RU    N5     sing N N 45  
0TN RU    N8     sing N N 46  
0TN N2    C2     doub Y N 47  
0TN C3    C2     sing Y N 48  
0TN C20   N5     doub Y N 49  
0TN C20   C21    sing Y N 50  
0TN N5    C19    sing Y N 51  
0TN N8    C28    doub Y N 52  
0TN N8    C26    sing Y N 53  
0TN C28   C27    sing Y N 54  
0TN C21   C41    doub Y N 55  
0TN C19   C26    doub Y N 56  
0TN C19   C22    sing Y N 57  
0TN C26   C25    sing Y N 58  
0TN C27   C42    doub Y N 59  
0TN C41   C22    sing Y N 60  
0TN C22   C23    doub Y N 61  
0TN C25   C42    sing Y N 62  
0TN C25   C24    doub Y N 63  
0TN C23   C24    sing Y N 64  
0TN C2    H1     sing N N 65  
0TN C3    H2     sing N N 66  
0TN C4    H3     sing N N 67  
0TN C9    H4     sing N N 68  
0TN C11   H5     sing N N 69  
0TN C12   H6     sing N N 70  
0TN C14   H7     sing N N 71  
0TN C16   H8     sing N N 72  
0TN C17   H9     sing N N 73  
0TN C18   H10    sing N N 74  
0TN C20   H11    sing N N 75  
0TN C21   H12    sing N N 76  
0TN C23   H13    sing N N 77  
0TN C24   H14    sing N N 78  
0TN C27   H15    sing N N 79  
0TN C28   H16    sing N N 80  
0TN C30   H17    sing N N 81  
0TN C31   H18    sing N N 82  
0TN C33   H19    sing N N 83  
0TN C34   H20    sing N N 84  
0TN C37   H21    sing N N 85  
0TN C38   H22    sing N N 86  
0TN C41   H23    sing N N 87  
0TN C42   H24    sing N N 88  
0TN C43   H25    sing N N 89  
0TN C44   H26    sing N N 90  
DA  OP3   P      sing N N 91  
DA  OP3   HOP3   sing N N 92  
DA  P     OP1    doub N N 93  
DA  P     OP2    sing N N 94  
DA  P     "O5'"  sing N N 95  
DA  OP2   HOP2   sing N N 96  
DA  "O5'" "C5'"  sing N N 97  
DA  "C5'" "C4'"  sing N N 98  
DA  "C5'" "H5'"  sing N N 99  
DA  "C5'" "H5''" sing N N 100 
DA  "C4'" "O4'"  sing N N 101 
DA  "C4'" "C3'"  sing N N 102 
DA  "C4'" "H4'"  sing N N 103 
DA  "O4'" "C1'"  sing N N 104 
DA  "C3'" "O3'"  sing N N 105 
DA  "C3'" "C2'"  sing N N 106 
DA  "C3'" "H3'"  sing N N 107 
DA  "O3'" "HO3'" sing N N 108 
DA  "C2'" "C1'"  sing N N 109 
DA  "C2'" "H2'"  sing N N 110 
DA  "C2'" "H2''" sing N N 111 
DA  "C1'" N9     sing N N 112 
DA  "C1'" "H1'"  sing N N 113 
DA  N9    C8     sing Y N 114 
DA  N9    C4     sing Y N 115 
DA  C8    N7     doub Y N 116 
DA  C8    H8     sing N N 117 
DA  N7    C5     sing Y N 118 
DA  C5    C6     sing Y N 119 
DA  C5    C4     doub Y N 120 
DA  C6    N6     sing N N 121 
DA  C6    N1     doub Y N 122 
DA  N6    H61    sing N N 123 
DA  N6    H62    sing N N 124 
DA  N1    C2     sing Y N 125 
DA  C2    N3     doub Y N 126 
DA  C2    H2     sing N N 127 
DA  N3    C4     sing Y N 128 
DC  OP3   P      sing N N 129 
DC  OP3   HOP3   sing N N 130 
DC  P     OP1    doub N N 131 
DC  P     OP2    sing N N 132 
DC  P     "O5'"  sing N N 133 
DC  OP2   HOP2   sing N N 134 
DC  "O5'" "C5'"  sing N N 135 
DC  "C5'" "C4'"  sing N N 136 
DC  "C5'" "H5'"  sing N N 137 
DC  "C5'" "H5''" sing N N 138 
DC  "C4'" "O4'"  sing N N 139 
DC  "C4'" "C3'"  sing N N 140 
DC  "C4'" "H4'"  sing N N 141 
DC  "O4'" "C1'"  sing N N 142 
DC  "C3'" "O3'"  sing N N 143 
DC  "C3'" "C2'"  sing N N 144 
DC  "C3'" "H3'"  sing N N 145 
DC  "O3'" "HO3'" sing N N 146 
DC  "C2'" "C1'"  sing N N 147 
DC  "C2'" "H2'"  sing N N 148 
DC  "C2'" "H2''" sing N N 149 
DC  "C1'" N1     sing N N 150 
DC  "C1'" "H1'"  sing N N 151 
DC  N1    C2     sing N N 152 
DC  N1    C6     sing N N 153 
DC  C2    O2     doub N N 154 
DC  C2    N3     sing N N 155 
DC  N3    C4     doub N N 156 
DC  C4    N4     sing N N 157 
DC  C4    C5     sing N N 158 
DC  N4    H41    sing N N 159 
DC  N4    H42    sing N N 160 
DC  C5    C6     doub N N 161 
DC  C5    H5     sing N N 162 
DC  C6    H6     sing N N 163 
DG  OP3   P      sing N N 164 
DG  OP3   HOP3   sing N N 165 
DG  P     OP1    doub N N 166 
DG  P     OP2    sing N N 167 
DG  P     "O5'"  sing N N 168 
DG  OP2   HOP2   sing N N 169 
DG  "O5'" "C5'"  sing N N 170 
DG  "C5'" "C4'"  sing N N 171 
DG  "C5'" "H5'"  sing N N 172 
DG  "C5'" "H5''" sing N N 173 
DG  "C4'" "O4'"  sing N N 174 
DG  "C4'" "C3'"  sing N N 175 
DG  "C4'" "H4'"  sing N N 176 
DG  "O4'" "C1'"  sing N N 177 
DG  "C3'" "O3'"  sing N N 178 
DG  "C3'" "C2'"  sing N N 179 
DG  "C3'" "H3'"  sing N N 180 
DG  "O3'" "HO3'" sing N N 181 
DG  "C2'" "C1'"  sing N N 182 
DG  "C2'" "H2'"  sing N N 183 
DG  "C2'" "H2''" sing N N 184 
DG  "C1'" N9     sing N N 185 
DG  "C1'" "H1'"  sing N N 186 
DG  N9    C8     sing Y N 187 
DG  N9    C4     sing Y N 188 
DG  C8    N7     doub Y N 189 
DG  C8    H8     sing N N 190 
DG  N7    C5     sing Y N 191 
DG  C5    C6     sing N N 192 
DG  C5    C4     doub Y N 193 
DG  C6    O6     doub N N 194 
DG  C6    N1     sing N N 195 
DG  N1    C2     sing N N 196 
DG  N1    H1     sing N N 197 
DG  C2    N2     sing N N 198 
DG  C2    N3     doub N N 199 
DG  N2    H21    sing N N 200 
DG  N2    H22    sing N N 201 
DG  N3    C4     sing N N 202 
DT  OP3   P      sing N N 203 
DT  OP3   HOP3   sing N N 204 
DT  P     OP1    doub N N 205 
DT  P     OP2    sing N N 206 
DT  P     "O5'"  sing N N 207 
DT  OP2   HOP2   sing N N 208 
DT  "O5'" "C5'"  sing N N 209 
DT  "C5'" "C4'"  sing N N 210 
DT  "C5'" "H5'"  sing N N 211 
DT  "C5'" "H5''" sing N N 212 
DT  "C4'" "O4'"  sing N N 213 
DT  "C4'" "C3'"  sing N N 214 
DT  "C4'" "H4'"  sing N N 215 
DT  "O4'" "C1'"  sing N N 216 
DT  "C3'" "O3'"  sing N N 217 
DT  "C3'" "C2'"  sing N N 218 
DT  "C3'" "H3'"  sing N N 219 
DT  "O3'" "HO3'" sing N N 220 
DT  "C2'" "C1'"  sing N N 221 
DT  "C2'" "H2'"  sing N N 222 
DT  "C2'" "H2''" sing N N 223 
DT  "C1'" N1     sing N N 224 
DT  "C1'" "H1'"  sing N N 225 
DT  N1    C2     sing N N 226 
DT  N1    C6     sing N N 227 
DT  C2    O2     doub N N 228 
DT  C2    N3     sing N N 229 
DT  N3    C4     sing N N 230 
DT  N3    H3     sing N N 231 
DT  C4    O4     doub N N 232 
DT  C4    C5     sing N N 233 
DT  C5    C7     sing N N 234 
DT  C5    C6     doub N N 235 
DT  C7    H71    sing N N 236 
DT  C7    H72    sing N N 237 
DT  C7    H73    sing N N 238 
DT  C6    H6     sing N N 239 
HOH O     H1     sing N N 240 
HOH O     H2     sing N N 241 
RKP C1    N2     sing Y N 242 
RKP C1    C5     doub Y N 243 
RKP C1    C10    sing Y N 244 
RKP N1    C10    sing Y N 245 
RKP N1    C12    doub Y N 246 
RKP C2    N2     doub Y N 247 
RKP C2    C3     sing Y N 248 
RKP C3    C4     doub Y N 249 
RKP N3    C6     sing Y N 250 
RKP N3    C15    doub Y N 251 
RKP C4    C5     sing Y N 252 
RKP N4    C7     sing Y N 253 
RKP N4    C13    doub Y N 254 
RKP C5    C6     sing Y N 255 
RKP N5    C19    sing Y N 256 
RKP N5    C20    doub Y N 257 
RKP C6    C7     doub Y N 258 
RKP C7    C8     sing Y N 259 
RKP C8    C9     sing Y N 260 
RKP C8    C10    doub Y N 261 
RKP N8    C26    sing Y N 262 
RKP N8    C28    doub Y N 263 
RKP C9    C11    doub Y N 264 
RKP N9    C29    sing Y N 265 
RKP N9    C30    doub Y N 266 
RKP C11   C12    sing Y N 267 
RKP N12   C36    sing Y N 268 
RKP N12   C38    doub Y N 269 
RKP C13   C14    sing Y N 270 
RKP C13   C15    sing Y N 271 
RKP C14   C18    doub Y N 272 
RKP C15   C16    sing Y N 273 
RKP C16   C17    doub Y N 274 
RKP C17   C18    sing Y N 275 
RKP C19   C22    doub Y N 276 
RKP C19   C26    sing Y N 277 
RKP C20   C21    sing Y N 278 
RKP C21   C41    doub Y N 279 
RKP C22   C23    sing Y N 280 
RKP C22   C41    sing Y N 281 
RKP C23   C24    doub Y N 282 
RKP C24   C25    sing Y N 283 
RKP C25   C26    doub Y N 284 
RKP C25   C42    sing Y N 285 
RKP C27   C28    sing Y N 286 
RKP C27   C42    doub Y N 287 
RKP C29   C32    doub Y N 288 
RKP C29   C36    sing Y N 289 
RKP C30   C31    sing Y N 290 
RKP C31   C43    doub Y N 291 
RKP C32   C33    sing Y N 292 
RKP C32   C43    sing Y N 293 
RKP C33   C34    doub Y N 294 
RKP C34   C35    sing Y N 295 
RKP C35   C36    doub Y N 296 
RKP C35   C44    sing Y N 297 
RKP C37   C38    sing Y N 298 
RKP C37   C44    doub Y N 299 
RKP C2    H2     sing N N 300 
RKP C3    H3     sing N N 301 
RKP C4    H4     sing N N 302 
RKP C9    H9     sing N N 303 
RKP C11   H11    sing N N 304 
RKP C12   H12    sing N N 305 
RKP C14   H14    sing N N 306 
RKP C16   H16    sing N N 307 
RKP C17   H17    sing N N 308 
RKP C18   H18    sing N N 309 
RKP C20   H20    sing N N 310 
RKP C21   H21    sing N N 311 
RKP C23   H23    sing N N 312 
RKP C24   H24    sing N N 313 
RKP C27   H27    sing N N 314 
RKP C28   H28    sing N N 315 
RKP C30   H30    sing N N 316 
RKP C31   H31    sing N N 317 
RKP C33   H33    sing N N 318 
RKP C34   H34    sing N N 319 
RKP C37   H37    sing N N 320 
RKP C38   H38    sing N N 321 
RKP C41   H41    sing N N 322 
RKP C42   H42    sing N N 323 
RKP C43   H43    sing N N 324 
RKP C44   H44    sing N N 325 
RKP RU    N1     sing N N 326 
RKP RU    N2     sing N N 327 
RKP RU    N5     sing N N 328 
RKP RU    N8     sing N N 329 
RKP RU    N9     sing N N 330 
RKP RU    N12    sing N N 331 
# 
_ndb_struct_conf_na.entry_id   4JD8 
_ndb_struct_conf_na.feature    'b-form double helix' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A DA 1 1_555 B DT 6 1_555 0.109  -0.160 -0.010 -10.207 7.445  1.755  1 A_DA1:DT6_B A 1 ? B 6 ? 20 1 
1 A DT 2 1_555 B DA 5 1_555 -0.127 -0.120 -0.009 11.815  9.408  2.394  2 A_DT2:DA5_B A 2 ? B 5 ? 20 1 
1 A DG 3 1_555 B DC 4 1_555 -0.163 -0.108 -0.204 -1.886  10.615 0.747  3 A_DG3:DC4_B A 3 ? B 4 ? 19 1 
1 A DC 4 1_555 B DG 3 1_555 0.361  -0.149 -0.330 16.740  1.365  -0.624 4 A_DC4:DG3_B A 4 ? B 3 ? 19 1 
1 A DA 5 1_555 B DT 2 1_555 0.028  -0.108 0.038  -6.629  14.314 7.784  5 A_DA5:DT2_B A 5 ? B 2 ? 20 1 
1 A DT 6 1_555 B DA 1 1_555 0.033  -0.146 -0.085 9.947   7.483  2.259  6 A_DT6:DA1_B A 6 ? B 1 ? 20 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A DA 1 1_555 B DT 6 1_555 A DT 2 1_555 B DA 5 1_555 0.841  -0.096 2.939 -0.746  5.093 26.161 -1.398 -1.998 2.844 11.116 1.627   
26.654 1 AA_DA1DT2:DA5DT6_BB A 1 ? B 6 ? A 2 ? B 5 ? 
1 A DT 2 1_555 B DA 5 1_555 A DG 3 1_555 B DC 4 1_555 0.089  1.866  6.876 9.373   1.741 30.259 2.735  3.507  6.698 3.235  -17.419 
31.692 2 AA_DT2DG3:DC4DA5_BB A 2 ? B 5 ? A 3 ? B 4 ? 
1 A DG 3 1_555 B DC 4 1_555 A DC 4 1_555 B DG 3 1_555 -0.345 -0.086 2.880 1.299   5.955 20.209 -2.414 1.416  2.714 16.493 -3.597  
21.099 3 AA_DG3DC4:DG3DC4_BB A 3 ? B 4 ? A 4 ? B 3 ? 
1 A DC 4 1_555 B DG 3 1_555 A DA 5 1_555 B DT 2 1_555 -1.698 1.875  6.734 -13.114 6.033 22.684 0.501  -4.034 6.942 13.699 29.780  
26.836 4 AA_DC4DA5:DT2DG3_BB A 4 ? B 3 ? A 5 ? B 2 ? 
1 A DA 5 1_555 B DT 2 1_555 A DT 6 1_555 B DA 1 1_555 -0.473 -0.217 3.017 1.408   4.475 16.797 -3.212 2.347  2.815 14.945 -4.703  
17.436 5 AA_DA5DT6:DA1DT2_BB A 5 ? B 2 ? A 6 ? B 1 ? 
# 
loop_
_pdbx_entity_nonpoly.entity_id 
_pdbx_entity_nonpoly.name 
_pdbx_entity_nonpoly.comp_id 
2 'Delta-Ru(phen)2(dppz) complex'  0TN 
3 'Lambda-Ru(phen)2(dppz) complex' RKP 
4 'POTASSIUM ION'                  K   
5 water                            HOH 
# 
_pdbx_initial_refinement_model.id               1 
_pdbx_initial_refinement_model.entity_id_list   ? 
_pdbx_initial_refinement_model.type             'experimental model' 
_pdbx_initial_refinement_model.source_name      PDB 
_pdbx_initial_refinement_model.accession_code   4E87 
_pdbx_initial_refinement_model.details          ? 
#