HEADER HYDROLASE 25-FEB-13 4JDP TITLE CRYSTAL STRUCTURE OF PROBABLE P-NITROPHENYL PHOSPHATASE (PHO2) (TARGET TITLE 2 EFI-501307) FROM ARCHAEOGLOBUS FULGIDUS DSM 4304 WITH MAGNESIUM BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: P-NITROPHENYL PHOSPHATASE (PHO2); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 224325; SOURCE 4 STRAIN: ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126; SOURCE 5 GENE: AF_0374; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS HYDROLASE, MAGNESIUM BINDING, STRUCTURAL GENOMICS, ENZYME FUNCTION KEYWDS 2 INITIATIVE (EFI) EXPDTA X-RAY DIFFRACTION AUTHOR Y.PATSKOVSKY,R.TORO,R.BHOSLE,B.HILLERICH,R.D.SEIDEL,E.WASHINGTON, AUTHOR 2 A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,J.HAMMONDS,W.D.ZENCHECK,H.J.IMKER, AUTHOR 3 N.AL OBAIDI,M.STEAD,J.LOVE,K.N.ALLEN,D.DUNAWAY-MARIANO,J.A.GERLT, AUTHOR 4 S.C.ALMO,ENZYME FUNCTION INITIATIVE (EFI) REVDAT 2 20-SEP-23 4JDP 1 REMARK SEQADV LINK REVDAT 1 06-MAR-13 4JDP 0 JRNL AUTH Y.PATSKOVSKY,R.TORO,R.BHOSLE,B.HILLERICH,R.D.SEIDEL, JRNL AUTH 2 E.WASHINGTON,A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,J.HAMMONDS, JRNL AUTH 3 W.D.ZENCHECK,H.J.IMKER,N.F.AL OBAIDI,M.STEAD,J.LOVE, JRNL AUTH 4 K.N.ALLEN,D.DUNAWAY-MARIANO,J.A.GERLT,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF PROBABLE P-NITROPHENYL PHOSPHATASE FROM JRNL TITL 2 ARCHAEOGLOBUS FULGIDUS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 50418 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1622 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.76 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3610 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE SET COUNT : 114 REMARK 3 BIN FREE R VALUE : 0.2610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4071 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.64000 REMARK 3 B22 (A**2) : 3.67000 REMARK 3 B33 (A**2) : -3.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.115 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.111 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.466 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4272 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4325 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5787 ; 1.203 ; 1.999 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9984 ; 0.726 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 567 ; 5.331 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 182 ;37.578 ;23.846 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 816 ;13.825 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;16.415 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 678 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4773 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 871 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4JDP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000077916. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52110 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 7.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07500 REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.46300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3QGM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MAGNESIUM CHLORIDE, 0.1M TRIS REMARK 280 -HCL, 30% PEG4000, PH 8.5, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.77950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.53100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.36650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.53100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.77950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.36650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -132.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 SER A 0 REMARK 465 GLY A 265 REMARK 465 MET B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 SER B -14 REMARK 465 SER B -13 REMARK 465 GLY B -12 REMARK 465 VAL B -11 REMARK 465 ASP B -10 REMARK 465 LEU B -9 REMARK 465 GLY B -8 REMARK 465 THR B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 LEU B -4 REMARK 465 TYR B -3 REMARK 465 PHE B -2 REMARK 465 GLU B 264 REMARK 465 GLY B 265 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 2 CG SD CE REMARK 470 GLN B -1 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 79 CA - C - O ANGL. DEV. = 16.2 DEGREES REMARK 500 ARG A 79 CA - C - O ANGL. DEV. = 16.1 DEGREES REMARK 500 ARG A 79 CA - C - N ANGL. DEV. = -14.7 DEGREES REMARK 500 ARG A 79 CA - C - N ANGL. DEV. = -14.5 DEGREES REMARK 500 ASP A 195 N - CA - C ANGL. DEV. = 16.9 DEGREES REMARK 500 ASP A 195 CA - C - O ANGL. DEV. = 15.9 DEGREES REMARK 500 ASP A 195 CA - C - O ANGL. DEV. = 14.6 DEGREES REMARK 500 ASP A 195 CA - C - N ANGL. DEV. = -14.6 DEGREES REMARK 500 LYS B 133 CA - C - O ANGL. DEV. = 14.2 DEGREES REMARK 500 LYS B 133 CA - C - N ANGL. DEV. = -14.3 DEGREES REMARK 500 ASP B 195 CB - CA - C ANGL. DEV. = -14.9 DEGREES REMARK 500 ASP B 195 CA - C - O ANGL. DEV. = 17.2 DEGREES REMARK 500 ASP B 195 CA - C - O ANGL. DEV. = 13.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 15 -51.02 -122.02 REMARK 500 SER A 19 -125.94 52.77 REMARK 500 ILE B 12 -61.62 -91.54 REMARK 500 VAL B 15 -55.05 -124.31 REMARK 500 SER B 19 -127.91 45.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 11 OD2 REMARK 620 2 ASP A 13 O 89.5 REMARK 620 3 ASP A 209 OD1 88.1 92.5 REMARK 620 4 HOH A 401 O 172.6 86.7 85.8 REMARK 620 5 HOH A 402 O 88.4 177.5 86.2 95.3 REMARK 620 6 HOH A 403 O 93.7 91.6 175.6 92.7 89.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 11 OD2 REMARK 620 2 ASP B 13 O 88.1 REMARK 620 3 ASP B 209 OD1 87.5 90.5 REMARK 620 4 HOH B 401 O 86.2 174.3 90.0 REMARK 620 5 HOH B 402 O 89.7 90.9 176.8 88.3 REMARK 620 6 HOH B 403 O 175.5 93.2 88.2 92.5 94.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-501307 RELATED DB: TARGETTRACK DBREF 4JDP A 1 265 UNP O29873 O29873_ARCFU 1 265 DBREF 4JDP B 1 265 UNP O29873 O29873_ARCFU 1 265 SEQADV 4JDP MET A -21 UNP O29873 EXPRESSION TAG SEQADV 4JDP HIS A -20 UNP O29873 EXPRESSION TAG SEQADV 4JDP HIS A -19 UNP O29873 EXPRESSION TAG SEQADV 4JDP HIS A -18 UNP O29873 EXPRESSION TAG SEQADV 4JDP HIS A -17 UNP O29873 EXPRESSION TAG SEQADV 4JDP HIS A -16 UNP O29873 EXPRESSION TAG SEQADV 4JDP HIS A -15 UNP O29873 EXPRESSION TAG SEQADV 4JDP SER A -14 UNP O29873 EXPRESSION TAG SEQADV 4JDP SER A -13 UNP O29873 EXPRESSION TAG SEQADV 4JDP GLY A -12 UNP O29873 EXPRESSION TAG SEQADV 4JDP VAL A -11 UNP O29873 EXPRESSION TAG SEQADV 4JDP ASP A -10 UNP O29873 EXPRESSION TAG SEQADV 4JDP LEU A -9 UNP O29873 EXPRESSION TAG SEQADV 4JDP GLY A -8 UNP O29873 EXPRESSION TAG SEQADV 4JDP THR A -7 UNP O29873 EXPRESSION TAG SEQADV 4JDP GLU A -6 UNP O29873 EXPRESSION TAG SEQADV 4JDP ASN A -5 UNP O29873 EXPRESSION TAG SEQADV 4JDP LEU A -4 UNP O29873 EXPRESSION TAG SEQADV 4JDP TYR A -3 UNP O29873 EXPRESSION TAG SEQADV 4JDP PHE A -2 UNP O29873 EXPRESSION TAG SEQADV 4JDP GLN A -1 UNP O29873 EXPRESSION TAG SEQADV 4JDP SER A 0 UNP O29873 EXPRESSION TAG SEQADV 4JDP MET B -21 UNP O29873 EXPRESSION TAG SEQADV 4JDP HIS B -20 UNP O29873 EXPRESSION TAG SEQADV 4JDP HIS B -19 UNP O29873 EXPRESSION TAG SEQADV 4JDP HIS B -18 UNP O29873 EXPRESSION TAG SEQADV 4JDP HIS B -17 UNP O29873 EXPRESSION TAG SEQADV 4JDP HIS B -16 UNP O29873 EXPRESSION TAG SEQADV 4JDP HIS B -15 UNP O29873 EXPRESSION TAG SEQADV 4JDP SER B -14 UNP O29873 EXPRESSION TAG SEQADV 4JDP SER B -13 UNP O29873 EXPRESSION TAG SEQADV 4JDP GLY B -12 UNP O29873 EXPRESSION TAG SEQADV 4JDP VAL B -11 UNP O29873 EXPRESSION TAG SEQADV 4JDP ASP B -10 UNP O29873 EXPRESSION TAG SEQADV 4JDP LEU B -9 UNP O29873 EXPRESSION TAG SEQADV 4JDP GLY B -8 UNP O29873 EXPRESSION TAG SEQADV 4JDP THR B -7 UNP O29873 EXPRESSION TAG SEQADV 4JDP GLU B -6 UNP O29873 EXPRESSION TAG SEQADV 4JDP ASN B -5 UNP O29873 EXPRESSION TAG SEQADV 4JDP LEU B -4 UNP O29873 EXPRESSION TAG SEQADV 4JDP TYR B -3 UNP O29873 EXPRESSION TAG SEQADV 4JDP PHE B -2 UNP O29873 EXPRESSION TAG SEQADV 4JDP GLN B -1 UNP O29873 EXPRESSION TAG SEQADV 4JDP SER B 0 UNP O29873 EXPRESSION TAG SEQRES 1 A 287 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 287 GLY THR GLU ASN LEU TYR PHE GLN SER MET MET PRO ASP SEQRES 3 A 287 LYS LYS GLY TYR ILE ILE ASP ILE ASP GLY VAL ILE GLY SEQRES 4 A 287 LYS SER VAL THR PRO ILE PRO GLU GLY VAL GLU GLY VAL SEQRES 5 A 287 LYS LYS LEU LYS GLU LEU GLY LYS LYS ILE ILE PHE VAL SEQRES 6 A 287 SER ASN ASN SER THR ARG SER ARG ARG ILE LEU LEU GLU SEQRES 7 A 287 ARG LEU ARG SER PHE GLY LEU GLU VAL GLY GLU ASP GLU SEQRES 8 A 287 ILE LEU VAL ALA THR TYR ALA THR ALA ARG PHE ILE ALA SEQRES 9 A 287 ARG GLU LYS PRO ASN ALA LYS VAL PHE THR THR GLY GLU SEQRES 10 A 287 GLU GLY LEU ILE GLU GLU LEU ARG LEU ALA GLY LEU GLU SEQRES 11 A 287 ILE VAL ASP TYR ASP GLU ALA GLU TYR LEU VAL VAL GLY SEQRES 12 A 287 SER ASN ARG LYS ILE ASN PHE GLU LEU MET THR LYS ALA SEQRES 13 A 287 LEU ARG ALA CYS LEU ARG GLY ILE ARG TYR ILE ALA THR SEQRES 14 A 287 ASN PRO ASP ARG ILE PHE PRO ALA GLU ASP GLY PRO ILE SEQRES 15 A 287 PRO GLY THR GLY MET ILE ILE GLY ALA LEU TYR TRP MET SEQRES 16 A 287 THR GLY ARG GLU PRO ASP VAL VAL VAL GLY LYS PRO SER SEQRES 17 A 287 GLU VAL ILE MET ARG GLU ALA LEU ASP ILE LEU GLY LEU SEQRES 18 A 287 ASP ALA LYS ASP VAL ALA VAL VAL GLY ASP GLN ILE ASP SEQRES 19 A 287 VAL ASP VAL ALA ALA GLY LYS ALA ILE GLY ALA GLU THR SEQRES 20 A 287 VAL LEU VAL LEU THR GLY VAL THR THR ARG GLU ASN LEU SEQRES 21 A 287 ASP GLN MET ILE GLU ARG HIS GLY LEU LYS PRO ASP TYR SEQRES 22 A 287 VAL PHE ASN SER LEU LYS ASP MET VAL GLU ALA LEU GLU SEQRES 23 A 287 GLY SEQRES 1 B 287 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 287 GLY THR GLU ASN LEU TYR PHE GLN SER MET MET PRO ASP SEQRES 3 B 287 LYS LYS GLY TYR ILE ILE ASP ILE ASP GLY VAL ILE GLY SEQRES 4 B 287 LYS SER VAL THR PRO ILE PRO GLU GLY VAL GLU GLY VAL SEQRES 5 B 287 LYS LYS LEU LYS GLU LEU GLY LYS LYS ILE ILE PHE VAL SEQRES 6 B 287 SER ASN ASN SER THR ARG SER ARG ARG ILE LEU LEU GLU SEQRES 7 B 287 ARG LEU ARG SER PHE GLY LEU GLU VAL GLY GLU ASP GLU SEQRES 8 B 287 ILE LEU VAL ALA THR TYR ALA THR ALA ARG PHE ILE ALA SEQRES 9 B 287 ARG GLU LYS PRO ASN ALA LYS VAL PHE THR THR GLY GLU SEQRES 10 B 287 GLU GLY LEU ILE GLU GLU LEU ARG LEU ALA GLY LEU GLU SEQRES 11 B 287 ILE VAL ASP TYR ASP GLU ALA GLU TYR LEU VAL VAL GLY SEQRES 12 B 287 SER ASN ARG LYS ILE ASN PHE GLU LEU MET THR LYS ALA SEQRES 13 B 287 LEU ARG ALA CYS LEU ARG GLY ILE ARG TYR ILE ALA THR SEQRES 14 B 287 ASN PRO ASP ARG ILE PHE PRO ALA GLU ASP GLY PRO ILE SEQRES 15 B 287 PRO GLY THR GLY MET ILE ILE GLY ALA LEU TYR TRP MET SEQRES 16 B 287 THR GLY ARG GLU PRO ASP VAL VAL VAL GLY LYS PRO SER SEQRES 17 B 287 GLU VAL ILE MET ARG GLU ALA LEU ASP ILE LEU GLY LEU SEQRES 18 B 287 ASP ALA LYS ASP VAL ALA VAL VAL GLY ASP GLN ILE ASP SEQRES 19 B 287 VAL ASP VAL ALA ALA GLY LYS ALA ILE GLY ALA GLU THR SEQRES 20 B 287 VAL LEU VAL LEU THR GLY VAL THR THR ARG GLU ASN LEU SEQRES 21 B 287 ASP GLN MET ILE GLU ARG HIS GLY LEU LYS PRO ASP TYR SEQRES 22 B 287 VAL PHE ASN SER LEU LYS ASP MET VAL GLU ALA LEU GLU SEQRES 23 B 287 GLY HET MG A 301 1 HET CL A 302 1 HET CL A 303 1 HET CL A 304 1 HET CL A 305 1 HET MG B 301 1 HET CL B 302 1 HET CL B 303 1 HET CL B 304 1 HET CL B 305 1 HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION FORMUL 3 MG 2(MG 2+) FORMUL 4 CL 8(CL 1-) FORMUL 13 HOH *420(H2 O) HELIX 1 1 ILE A 23 LEU A 36 1 14 HELIX 2 2 SER A 50 PHE A 61 1 12 HELIX 3 3 GLY A 66 ASP A 68 5 3 HELIX 4 4 ALA A 73 LYS A 85 1 13 HELIX 5 5 GLU A 95 ALA A 105 1 11 HELIX 6 6 ASN A 127 GLY A 141 1 15 HELIX 7 7 THR A 163 GLY A 175 1 13 HELIX 8 8 SER A 186 GLY A 198 1 13 HELIX 9 9 ASP A 200 LYS A 202 5 3 HELIX 10 10 VAL A 213 ILE A 221 1 9 HELIX 11 11 ASN A 237 GLY A 246 1 10 HELIX 12 12 SER A 255 ALA A 262 1 8 HELIX 13 13 ILE B 23 LEU B 36 1 14 HELIX 14 14 SER B 50 PHE B 61 1 12 HELIX 15 15 GLY B 66 ASP B 68 5 3 HELIX 16 16 ALA B 73 LYS B 85 1 13 HELIX 17 17 GLU B 95 ALA B 105 1 11 HELIX 18 18 ASN B 127 ARG B 140 1 14 HELIX 19 19 THR B 163 GLY B 175 1 13 HELIX 20 20 SER B 186 GLY B 198 1 13 HELIX 21 21 ASP B 200 LYS B 202 5 3 HELIX 22 22 VAL B 213 ILE B 221 1 9 HELIX 23 23 ASN B 237 GLY B 246 1 10 HELIX 24 24 SER B 255 ALA B 262 1 8 SHEET 1 A 6 ILE A 70 VAL A 72 0 SHEET 2 A 6 LYS A 39 SER A 44 1 N PHE A 42 O LEU A 71 SHEET 3 A 6 GLY A 7 ILE A 10 1 N ILE A 10 O ILE A 41 SHEET 4 A 6 VAL A 204 GLY A 208 1 O VAL A 207 N ILE A 9 SHEET 5 A 6 GLU A 224 VAL A 228 1 O VAL A 226 N VAL A 206 SHEET 6 A 6 TYR A 251 PHE A 253 1 O TYR A 251 N LEU A 227 SHEET 1 B 2 GLY A 17 LYS A 18 0 SHEET 2 B 2 THR A 21 PRO A 22 -1 O THR A 21 N LYS A 18 SHEET 1 C 5 GLU A 108 ILE A 109 0 SHEET 2 C 5 LYS A 89 THR A 92 1 N VAL A 90 O GLU A 108 SHEET 3 C 5 TYR A 117 VAL A 120 1 O VAL A 119 N PHE A 91 SHEET 4 C 5 ARG A 143 ALA A 146 1 O ILE A 145 N LEU A 118 SHEET 5 C 5 VAL A 180 VAL A 181 1 O VAL A 180 N ALA A 146 SHEET 1 D 2 ILE A 152 ALA A 155 0 SHEET 2 D 2 GLY A 158 PRO A 161 -1 O ILE A 160 N PHE A 153 SHEET 1 E 6 ILE B 70 VAL B 72 0 SHEET 2 E 6 LYS B 39 SER B 44 1 N PHE B 42 O LEU B 71 SHEET 3 E 6 GLY B 7 ILE B 10 1 N ILE B 10 O ILE B 41 SHEET 4 E 6 VAL B 204 GLY B 208 1 O VAL B 207 N ILE B 9 SHEET 5 E 6 GLU B 224 VAL B 228 1 O VAL B 226 N VAL B 206 SHEET 6 E 6 TYR B 251 PHE B 253 1 O TYR B 251 N LEU B 227 SHEET 1 F 2 GLY B 17 LYS B 18 0 SHEET 2 F 2 THR B 21 PRO B 22 -1 O THR B 21 N LYS B 18 SHEET 1 G 5 GLU B 108 ILE B 109 0 SHEET 2 G 5 LYS B 89 THR B 92 1 N VAL B 90 O GLU B 108 SHEET 3 G 5 TYR B 117 VAL B 120 1 O VAL B 119 N PHE B 91 SHEET 4 G 5 ARG B 143 ALA B 146 1 O ARG B 143 N LEU B 118 SHEET 5 G 5 VAL B 180 VAL B 181 1 O VAL B 180 N ALA B 146 SHEET 1 H 2 ILE B 152 PHE B 153 0 SHEET 2 H 2 ILE B 160 PRO B 161 -1 O ILE B 160 N PHE B 153 LINK OD2 ASP A 11 MG MG A 301 1555 1555 2.12 LINK O ASP A 13 MG MG A 301 1555 1555 2.16 LINK OD1 ASP A 209 MG MG A 301 1555 1555 2.15 LINK MG MG A 301 O HOH A 401 1555 1555 2.16 LINK MG MG A 301 O HOH A 402 1555 1555 2.08 LINK MG MG A 301 O HOH A 403 1555 1555 2.03 LINK OD2 ASP B 11 MG MG B 301 1555 1555 2.13 LINK O ASP B 13 MG MG B 301 1555 1555 2.15 LINK OD1 ASP B 209 MG MG B 301 1555 1555 2.13 LINK MG MG B 301 O HOH B 401 1555 1555 2.14 LINK MG MG B 301 O HOH B 402 1555 1555 2.05 LINK MG MG B 301 O HOH B 403 1555 1555 1.98 CISPEP 1 LYS A 184 PRO A 185 0 3.49 CISPEP 2 LYS B 184 PRO B 185 0 7.14 SITE 1 AC1 6 ASP A 11 ASP A 13 ASP A 209 HOH A 401 SITE 2 AC1 6 HOH A 402 HOH A 403 SITE 1 AC2 4 SER A 44 ASN A 46 HOH A 429 HOH A 503 SITE 1 AC3 3 ASN A 46 ARG A 49 ARG A 57 SITE 1 AC4 4 ASN A 148 GLY A 162 THR A 163 HOH A 491 SITE 1 AC5 4 LYS A 34 LEU A 63 GLU A 64 HOH A 568 SITE 1 AC6 6 ASP B 11 ASP B 13 ASP B 209 HOH B 401 SITE 2 AC6 6 HOH B 402 HOH B 403 SITE 1 AC7 3 SER B 44 ASN B 46 HOH B 423 SITE 1 AC8 4 ASN B 46 ARG B 49 ARG B 57 HOH B 530 SITE 1 AC9 3 ASN B 148 GLY B 162 THR B 163 SITE 1 BC1 6 ARG B 49 SER B 50 ILE B 53 GLY B 97 SITE 2 BC1 6 HOH B 586 HOH B 591 CRYST1 59.559 64.733 135.062 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016790 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015448 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007404 0.00000