HEADER CELL ADHESION 25-FEB-13 4JDZ TITLE STRUCTURES OF SDRD FROM STAPHYLOCOCCUS AUREUS REVEAL THE MOLECULAR TITLE 2 MECHANISM OF HOW THE CELL SURFACE RECEPTORS RECOGNIZE THEIR LIGANDS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SER-ASP RICH FIBRINOGEN/BONE SIALOPROTEIN-BINDING PROTEIN COMPND 3 SDRD; COMPND 4 CHAIN: B; COMPND 5 FRAGMENT: UNP RESIDUES 235-678; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: SER-ASP RICH FIBRINOGEN/BONE SIALOPROTEIN-BINDING PROTEIN COMPND 10 SDRD; COMPND 11 CHAIN: A; COMPND 12 FRAGMENT: UNP RESIDUES 235-673; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS; SOURCE 3 ORGANISM_TAXID: 548473; SOURCE 4 STRAIN: TCH60; SOURCE 5 GENE: SDRD, HMPREF0772_12627; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS; SOURCE 10 ORGANISM_TAXID: 548473; SOURCE 11 STRAIN: TCH60; SOURCE 12 GENE: SDRD, HMPREF0772_12627; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RECEPTOR, SURFACE, MSCRAMM, STAPHYLOCOCCUS AUREUS, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR X.WANG,J.GE,M.YANG REVDAT 3 20-MAR-24 4JDZ 1 REMARK LINK REVDAT 2 04-DEC-19 4JDZ 1 REMARK SEQADV REVDAT 1 19-JUN-13 4JDZ 0 JRNL AUTH X.WANG,J.GE,B.LIU,Y.HU,M.YANG JRNL TITL STRUCTURES OF SDRD FROM STAPHYLOCOCCUS AUREUS REVEAL THE JRNL TITL 2 MOLECULAR MECHANISM OF HOW THE CELL SURFACE RECEPTORS JRNL TITL 3 RECOGNIZE THEIR LIGANDS JRNL REF PROTEIN CELL V. 4 277 2013 JRNL REFN ISSN 1674-800X JRNL PMID 23549613 JRNL DOI 10.1007/S13238-013-3009-X REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 55836 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2753 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.4706 - 5.6760 0.00 0 0 0.0000 0.0000 REMARK 3 2 5.6760 - 4.5105 0.00 0 0 0.0000 0.0000 REMARK 3 3 4.5105 - 3.9418 0.00 0 0 0.0000 0.0000 REMARK 3 4 3.9418 - 3.5821 0.00 0 0 0.0000 0.0000 REMARK 3 5 3.5821 - 3.3257 0.00 0 0 0.0000 0.0000 REMARK 3 6 3.3257 - 3.1299 0.00 0 0 0.0000 0.0000 REMARK 3 7 3.1299 - 2.9733 0.00 0 0 0.0000 0.0000 REMARK 3 8 2.9733 - 2.8440 0.00 0 0 0.0000 0.0000 REMARK 3 9 2.8440 - 2.7346 0.00 0 0 0.0000 0.0000 REMARK 3 10 2.7346 - 2.6403 0.00 0 0 0.0000 0.0000 REMARK 3 11 2.6403 - 2.5577 0.00 0 0 0.0000 0.0000 REMARK 3 12 2.5577 - 2.4847 0.00 0 0 0.0000 0.0000 REMARK 3 13 2.4847 - 2.4193 0.00 0 0 0.0000 0.0000 REMARK 3 14 2.4193 - 2.3603 0.00 0 0 0.0000 0.0000 REMARK 3 15 2.3603 - 2.3067 0.00 0 0 0.0000 0.0000 REMARK 3 16 2.3067 - 2.2576 0.00 0 0 0.0000 0.0000 REMARK 3 17 2.2576 - 2.2124 0.00 0 0 0.0000 0.0000 REMARK 3 18 2.2124 - 2.1707 0.00 0 0 0.0000 0.0000 REMARK 3 19 2.1707 - 2.1320 0.00 0 0 0.0000 0.0000 REMARK 3 20 2.1320 - 2.1000 0.00 0 0 0.0000 0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 24 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 236:271) REMARK 3 ORIGIN FOR THE GROUP (A): 23.6487 0.6385 16.9717 REMARK 3 T TENSOR REMARK 3 T11: 0.6858 T22: 0.5672 REMARK 3 T33: 0.3027 T12: 0.2400 REMARK 3 T13: -0.0377 T23: 0.1008 REMARK 3 L TENSOR REMARK 3 L11: 1.2509 L22: 0.4477 REMARK 3 L33: 1.6433 L12: -0.5254 REMARK 3 L13: -0.3014 L23: 0.9027 REMARK 3 S TENSOR REMARK 3 S11: 0.5140 S12: 0.4622 S13: 0.1545 REMARK 3 S21: -0.5931 S22: -0.6189 S23: 0.2217 REMARK 3 S31: -0.8938 S32: -0.1148 S33: 0.1338 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 272:302) REMARK 3 ORIGIN FOR THE GROUP (A): 35.0275 6.3110 17.1894 REMARK 3 T TENSOR REMARK 3 T11: 1.0414 T22: 0.3934 REMARK 3 T33: 0.4008 T12: -0.1401 REMARK 3 T13: 0.0396 T23: 0.1811 REMARK 3 L TENSOR REMARK 3 L11: 0.9042 L22: 1.2903 REMARK 3 L33: 0.4291 L12: 0.0581 REMARK 3 L13: -0.5964 L23: -0.2402 REMARK 3 S TENSOR REMARK 3 S11: 0.1022 S12: 0.0221 S13: 0.3443 REMARK 3 S21: -0.7585 S22: -0.3391 S23: -0.5051 REMARK 3 S31: -1.0087 S32: 0.6937 S33: 0.0685 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 303:343) REMARK 3 ORIGIN FOR THE GROUP (A): 40.5904 5.5569 10.1787 REMARK 3 T TENSOR REMARK 3 T11: 1.1255 T22: 0.8018 REMARK 3 T33: 0.5537 T12: -0.2573 REMARK 3 T13: 0.1515 T23: 0.3030 REMARK 3 L TENSOR REMARK 3 L11: 0.6912 L22: 0.8196 REMARK 3 L33: 1.0434 L12: 0.1627 REMARK 3 L13: -0.9798 L23: 0.1630 REMARK 3 S TENSOR REMARK 3 S11: 0.4448 S12: 0.1784 S13: 0.0960 REMARK 3 S21: 0.1178 S22: -0.6827 S23: -0.9141 REMARK 3 S31: -1.6352 S32: 1.2020 S33: -0.0784 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 344:400) REMARK 3 ORIGIN FOR THE GROUP (A): 21.4019 -2.1218 28.4149 REMARK 3 T TENSOR REMARK 3 T11: 0.4076 T22: 0.3975 REMARK 3 T33: 0.2123 T12: 0.2103 REMARK 3 T13: -0.0425 T23: 0.0338 REMARK 3 L TENSOR REMARK 3 L11: 1.1569 L22: 1.3059 REMARK 3 L33: 1.8926 L12: -0.2144 REMARK 3 L13: -0.1297 L23: 1.2779 REMARK 3 S TENSOR REMARK 3 S11: 0.1563 S12: 0.5590 S13: 0.0137 REMARK 3 S21: -0.3553 S22: -0.3261 S23: 0.2005 REMARK 3 S31: -0.8085 S32: -0.4187 S33: 0.1494 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 401:434) REMARK 3 ORIGIN FOR THE GROUP (A): 31.3386 -16.2928 40.6312 REMARK 3 T TENSOR REMARK 3 T11: 0.1622 T22: 0.1584 REMARK 3 T33: 0.2425 T12: 0.0142 REMARK 3 T13: 0.0640 T23: 0.0245 REMARK 3 L TENSOR REMARK 3 L11: 0.4544 L22: 2.4792 REMARK 3 L33: 0.3891 L12: -0.0190 REMARK 3 L13: -0.0238 L23: 0.1558 REMARK 3 S TENSOR REMARK 3 S11: -0.0023 S12: 0.0071 S13: 0.0090 REMARK 3 S21: -0.0462 S22: -0.0636 S23: -0.1602 REMARK 3 S31: 0.0308 S32: 0.1018 S33: 0.0871 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 435:498) REMARK 3 ORIGIN FOR THE GROUP (A): 31.7774 -16.0098 44.7886 REMARK 3 T TENSOR REMARK 3 T11: 0.1133 T22: 0.1341 REMARK 3 T33: 0.2055 T12: 0.0085 REMARK 3 T13: 0.0146 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 0.3844 L22: 1.5337 REMARK 3 L33: 0.8815 L12: -0.1870 REMARK 3 L13: -0.2149 L23: -0.1598 REMARK 3 S TENSOR REMARK 3 S11: -0.0225 S12: -0.0277 S13: -0.0422 REMARK 3 S21: -0.0090 S22: 0.0026 S23: -0.1620 REMARK 3 S31: -0.0280 S32: 0.0645 S33: 0.0143 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 499:517) REMARK 3 ORIGIN FOR THE GROUP (A): 30.6772 -15.1852 47.1250 REMARK 3 T TENSOR REMARK 3 T11: 0.1966 T22: 0.1598 REMARK 3 T33: 0.2431 T12: -0.0139 REMARK 3 T13: 0.0116 T23: -0.0300 REMARK 3 L TENSOR REMARK 3 L11: 0.1868 L22: 1.6102 REMARK 3 L33: 0.3629 L12: 0.0569 REMARK 3 L13: 0.1487 L23: -0.4978 REMARK 3 S TENSOR REMARK 3 S11: -0.1330 S12: 0.0433 S13: -0.1602 REMARK 3 S21: 0.3251 S22: 0.0988 S23: -0.2141 REMARK 3 S31: 0.1672 S32: 0.1491 S33: 0.0067 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 518:523) REMARK 3 ORIGIN FOR THE GROUP (A): 39.1354 -27.2943 23.3484 REMARK 3 T TENSOR REMARK 3 T11: 0.5402 T22: 0.8463 REMARK 3 T33: 0.4849 T12: 0.0817 REMARK 3 T13: 0.3261 T23: -0.2829 REMARK 3 L TENSOR REMARK 3 L11: 0.0723 L22: 0.2938 REMARK 3 L33: 0.6015 L12: -0.0381 REMARK 3 L13: -0.1336 L23: 0.3183 REMARK 3 S TENSOR REMARK 3 S11: 0.1381 S12: 0.7219 S13: -0.1698 REMARK 3 S21: -0.1078 S22: -0.2647 S23: 0.0803 REMARK 3 S31: 0.2800 S32: -0.2015 S33: 0.0669 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 524:550) REMARK 3 ORIGIN FOR THE GROUP (A): 24.5793 -21.9764 38.8107 REMARK 3 T TENSOR REMARK 3 T11: 0.1919 T22: 0.1763 REMARK 3 T33: 0.3386 T12: -0.0105 REMARK 3 T13: 0.0106 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.2703 L22: 0.9086 REMARK 3 L33: 0.9862 L12: -0.2677 REMARK 3 L13: 0.4874 L23: 0.0634 REMARK 3 S TENSOR REMARK 3 S11: -0.0193 S12: 0.1522 S13: -0.1536 REMARK 3 S21: -0.0635 S22: -0.0030 S23: 0.3964 REMARK 3 S31: -0.0407 S32: -0.2982 S33: 0.0138 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 558:587) REMARK 3 ORIGIN FOR THE GROUP (A): 49.9478 3.0273 -8.1561 REMARK 3 T TENSOR REMARK 3 T11: 0.7426 T22: 0.8239 REMARK 3 T33: 0.4716 T12: -0.2124 REMARK 3 T13: 0.0433 T23: 0.1420 REMARK 3 L TENSOR REMARK 3 L11: 0.5346 L22: 0.4267 REMARK 3 L33: 0.5991 L12: -0.1106 REMARK 3 L13: -0.1181 L23: 0.3687 REMARK 3 S TENSOR REMARK 3 S11: -0.1379 S12: 0.3920 S13: 0.4355 REMARK 3 S21: 0.3125 S22: 0.4563 S23: 0.3175 REMARK 3 S31: -0.9898 S32: 0.3198 S33: -0.1645 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN A AND RESID 588:593) REMARK 3 ORIGIN FOR THE GROUP (A): 52.7174 -13.9108 -7.8565 REMARK 3 T TENSOR REMARK 3 T11: 0.6680 T22: 1.3369 REMARK 3 T33: 1.4267 T12: 0.1793 REMARK 3 T13: -0.1137 T23: -0.4547 REMARK 3 L TENSOR REMARK 3 L11: 0.1568 L22: 0.9347 REMARK 3 L33: 0.8495 L12: -0.3748 REMARK 3 L13: 0.1542 L23: -0.2152 REMARK 3 S TENSOR REMARK 3 S11: 0.3576 S12: 0.5150 S13: 0.2749 REMARK 3 S21: 0.3154 S22: 0.1290 S23: 0.0501 REMARK 3 S31: 0.2560 S32: 0.2391 S33: -0.3042 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN A AND RESID 594:673) REMARK 3 ORIGIN FOR THE GROUP (A): 52.8779 -3.9031 -8.1868 REMARK 3 T TENSOR REMARK 3 T11: 0.6066 T22: 0.9881 REMARK 3 T33: 0.6146 T12: 0.0457 REMARK 3 T13: -0.0054 T23: 0.1316 REMARK 3 L TENSOR REMARK 3 L11: 1.5360 L22: 1.0078 REMARK 3 L33: 0.6698 L12: 0.8912 REMARK 3 L13: 0.5073 L23: 0.5937 REMARK 3 S TENSOR REMARK 3 S11: -0.4392 S12: 0.7132 S13: -0.3195 REMARK 3 S21: -0.1320 S22: 0.6285 S23: -0.0412 REMARK 3 S31: -0.1096 S32: 0.3538 S33: -0.1377 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN B AND RESID 235:382) REMARK 3 ORIGIN FOR THE GROUP (A): -3.8097 0.7409 17.2345 REMARK 3 T TENSOR REMARK 3 T11: 0.2333 T22: 0.1953 REMARK 3 T33: 0.1481 T12: -0.0204 REMARK 3 T13: -0.0082 T23: 0.0463 REMARK 3 L TENSOR REMARK 3 L11: 2.3474 L22: 0.7362 REMARK 3 L33: 2.0335 L12: 0.2094 REMARK 3 L13: -1.4205 L23: 0.0058 REMARK 3 S TENSOR REMARK 3 S11: 0.0141 S12: 0.1999 S13: 0.1606 REMARK 3 S21: -0.1915 S22: 0.0156 S23: 0.0473 REMARK 3 S31: -0.1693 S32: -0.0412 S33: -0.0129 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN B AND RESID 383:393) REMARK 3 ORIGIN FOR THE GROUP (A): -22.3149 -18.0159 42.3310 REMARK 3 T TENSOR REMARK 3 T11: 0.0294 T22: 0.1586 REMARK 3 T33: 0.2135 T12: -0.0101 REMARK 3 T13: -0.0176 T23: 0.0278 REMARK 3 L TENSOR REMARK 3 L11: 0.2524 L22: 1.9562 REMARK 3 L33: 1.9696 L12: 0.3389 REMARK 3 L13: -0.6021 L23: -1.1079 REMARK 3 S TENSOR REMARK 3 S11: -0.0024 S12: 0.3384 S13: -0.1186 REMARK 3 S21: 0.1749 S22: 0.2333 S23: 0.5525 REMARK 3 S31: -0.2585 S32: -0.4264 S33: -0.2199 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN B AND RESID 394:436) REMARK 3 ORIGIN FOR THE GROUP (A): -6.4117 -20.1639 40.5344 REMARK 3 T TENSOR REMARK 3 T11: 0.0919 T22: 0.1347 REMARK 3 T33: 0.1940 T12: 0.0121 REMARK 3 T13: -0.0101 T23: -0.0264 REMARK 3 L TENSOR REMARK 3 L11: 0.8026 L22: 1.5313 REMARK 3 L33: 0.7176 L12: -0.2712 REMARK 3 L13: 0.2076 L23: -0.1750 REMARK 3 S TENSOR REMARK 3 S11: 0.1237 S12: 0.1478 S13: -0.0354 REMARK 3 S21: -0.0343 S22: -0.0244 S23: -0.0531 REMARK 3 S31: 0.0228 S32: 0.0997 S33: -0.0843 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN B AND RESID 437:516) REMARK 3 ORIGIN FOR THE GROUP (A): -5.3846 -19.1088 45.6463 REMARK 3 T TENSOR REMARK 3 T11: 0.0933 T22: 0.1407 REMARK 3 T33: 0.1568 T12: -0.0012 REMARK 3 T13: -0.0213 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.5370 L22: 2.0143 REMARK 3 L33: 1.2105 L12: -0.1963 REMARK 3 L13: -0.0243 L23: -0.4534 REMARK 3 S TENSOR REMARK 3 S11: -0.0497 S12: -0.0644 S13: 0.0254 REMARK 3 S21: 0.1149 S22: 0.0604 S23: -0.1422 REMARK 3 S31: -0.0208 S32: 0.1343 S33: 0.0003 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: (CHAIN B AND RESID 517:523) REMARK 3 ORIGIN FOR THE GROUP (A): 2.3099 -31.4894 25.3286 REMARK 3 T TENSOR REMARK 3 T11: 0.5682 T22: 0.6849 REMARK 3 T33: 0.4555 T12: 0.3462 REMARK 3 T13: 0.0675 T23: -0.2897 REMARK 3 L TENSOR REMARK 3 L11: 0.2540 L22: 1.0540 REMARK 3 L33: 0.0693 L12: 0.0891 REMARK 3 L13: 0.0538 L23: 0.1322 REMARK 3 S TENSOR REMARK 3 S11: -0.1475 S12: 0.7405 S13: -0.2712 REMARK 3 S21: 0.7115 S22: -0.3476 S23: 0.2286 REMARK 3 S31: 0.1723 S32: 0.1085 S33: 0.2147 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: (CHAIN B AND RESID 524:544) REMARK 3 ORIGIN FOR THE GROUP (A): -14.4342 -25.8948 42.8034 REMARK 3 T TENSOR REMARK 3 T11: 0.1202 T22: 0.1231 REMARK 3 T33: 0.2456 T12: 0.0135 REMARK 3 T13: -0.0032 T23: 0.0201 REMARK 3 L TENSOR REMARK 3 L11: 0.6733 L22: 0.2617 REMARK 3 L33: 0.3320 L12: 0.0795 REMARK 3 L13: -0.3133 L23: 0.0901 REMARK 3 S TENSOR REMARK 3 S11: -0.0484 S12: 0.0894 S13: -0.1798 REMARK 3 S21: -0.0476 S22: 0.1018 S23: 0.2631 REMARK 3 S31: 0.1726 S32: -0.1695 S33: -0.0040 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: (CHAIN B AND RESID 545:550) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0365 -24.1324 24.0907 REMARK 3 T TENSOR REMARK 3 T11: 0.4767 T22: 0.4265 REMARK 3 T33: 0.2693 T12: 0.1326 REMARK 3 T13: -0.0019 T23: -0.0595 REMARK 3 L TENSOR REMARK 3 L11: 2.0917 L22: 1.8820 REMARK 3 L33: 0.9519 L12: -0.3193 REMARK 3 L13: -0.5947 L23: 1.1180 REMARK 3 S TENSOR REMARK 3 S11: 0.2697 S12: 0.7921 S13: -0.2244 REMARK 3 S21: -0.6583 S22: 0.1543 S23: 0.0775 REMARK 3 S31: 0.3516 S32: 0.4107 S33: -0.2176 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: (CHAIN B AND RESID 551:560) REMARK 3 ORIGIN FOR THE GROUP (A): 7.0674 -23.8930 10.7586 REMARK 3 T TENSOR REMARK 3 T11: 0.9493 T22: 0.9993 REMARK 3 T33: 0.9472 T12: -0.4385 REMARK 3 T13: 0.0626 T23: 0.1957 REMARK 3 L TENSOR REMARK 3 L11: 6.5862 L22: 3.6031 REMARK 3 L33: 4.1085 L12: -1.3814 REMARK 3 L13: 5.0791 L23: -0.4130 REMARK 3 S TENSOR REMARK 3 S11: 0.2312 S12: -0.3006 S13: -0.0044 REMARK 3 S21: 0.5143 S22: -0.0624 S23: 0.0691 REMARK 3 S31: -0.0582 S32: 0.5917 S33: 0.1992 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: (CHAIN B AND RESID 561:627) REMARK 3 ORIGIN FOR THE GROUP (A): 13.8811 -6.8342 -8.9013 REMARK 3 T TENSOR REMARK 3 T11: 0.3615 T22: 0.4085 REMARK 3 T33: 0.1525 T12: -0.1624 REMARK 3 T13: -0.0434 T23: 0.0646 REMARK 3 L TENSOR REMARK 3 L11: 1.5467 L22: 0.6884 REMARK 3 L33: 1.3542 L12: 0.0449 REMARK 3 L13: -0.6951 L23: -0.7583 REMARK 3 S TENSOR REMARK 3 S11: -0.0428 S12: 0.0949 S13: -0.0444 REMARK 3 S21: -0.1867 S22: 0.2251 S23: 0.1285 REMARK 3 S31: -0.0023 S32: -0.2647 S33: -0.1502 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: (CHAIN B AND RESID 628:645) REMARK 3 ORIGIN FOR THE GROUP (A): 21.6220 0.2097 -12.7608 REMARK 3 T TENSOR REMARK 3 T11: 0.3815 T22: 0.6546 REMARK 3 T33: 0.2912 T12: -0.0514 REMARK 3 T13: 0.0327 T23: 0.0800 REMARK 3 L TENSOR REMARK 3 L11: 0.3668 L22: 0.8368 REMARK 3 L33: 0.5742 L12: -0.0136 REMARK 3 L13: -0.2572 L23: -0.2312 REMARK 3 S TENSOR REMARK 3 S11: -0.1345 S12: -0.1952 S13: 0.3382 REMARK 3 S21: -0.2655 S22: -0.1949 S23: -0.3186 REMARK 3 S31: -0.2696 S32: 0.2059 S33: 0.0896 REMARK 3 TLS GROUP : 23 REMARK 3 SELECTION: (CHAIN B AND RESID 646:672) REMARK 3 ORIGIN FOR THE GROUP (A): 19.3236 -5.6087 -7.3481 REMARK 3 T TENSOR REMARK 3 T11: 0.3553 T22: 0.5748 REMARK 3 T33: 0.2235 T12: -0.0325 REMARK 3 T13: -0.0688 T23: 0.0584 REMARK 3 L TENSOR REMARK 3 L11: 0.6497 L22: 0.2179 REMARK 3 L33: 0.3699 L12: -0.0079 REMARK 3 L13: -0.2694 L23: 0.2823 REMARK 3 S TENSOR REMARK 3 S11: 0.0773 S12: 0.1586 S13: -0.1118 REMARK 3 S21: -0.0389 S22: 0.1414 S23: 0.1263 REMARK 3 S31: 0.2838 S32: 0.5869 S33: -0.1157 REMARK 3 TLS GROUP : 24 REMARK 3 SELECTION: (CHAIN B AND RESID 673:679) REMARK 3 ORIGIN FOR THE GROUP (A): 19.2818 11.1372 -32.8165 REMARK 3 T TENSOR REMARK 3 T11: 0.5492 T22: 0.9637 REMARK 3 T33: 0.1280 T12: -0.0507 REMARK 3 T13: 0.1275 T23: 0.0861 REMARK 3 L TENSOR REMARK 3 L11: 0.0828 L22: 1.2453 REMARK 3 L33: 0.0409 L12: -0.1498 REMARK 3 L13: -0.0485 L23: 0.2179 REMARK 3 S TENSOR REMARK 3 S11: 0.7144 S12: 0.1719 S13: 0.1846 REMARK 3 S21: -0.7476 S22: -0.5534 S23: -0.3180 REMARK 3 S31: 0.2910 S32: -0.0891 S33: -0.1321 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JDZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000077925. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55836 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: LAUE REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: DM REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M CALCIUM CHLORIDE DIHYDRATE, 0.1M REMARK 280 HEPES SODIUM(7.5), 20%(V/V) 2-PROPANOL, PH 8.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.94000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 550A REMARK 465 GLN A 550B REMARK 465 SER A 550C REMARK 465 GLY A 550D REMARK 465 GLY A 550E REMARK 465 ALA A 550F REMARK 465 ALA A 550G REMARK 465 GLN A 550H REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 391 -132.02 57.10 REMARK 500 ASP B 391 -132.02 50.45 REMARK 500 HIS B 405 64.40 -114.09 REMARK 500 ASN B 505 -2.99 -144.08 REMARK 500 ALA B 522 -23.86 84.09 REMARK 500 ASN B 550 91.68 -52.93 REMARK 500 ALA B 556 86.80 44.62 REMARK 500 ALA B 557 79.01 15.01 REMARK 500 GLN B 558 -158.79 46.00 REMARK 500 ASN B 565 -33.05 115.50 REMARK 500 ALA B 595 -72.21 -70.98 REMARK 500 ALA B 596 -91.95 -29.98 REMARK 500 ALA B 597 -100.21 -142.53 REMARK 500 ALA B 598 -126.39 -141.67 REMARK 500 LYS B 638 51.68 39.00 REMARK 500 ASN B 658 87.57 -152.81 REMARK 500 VAL A 238 35.21 -90.21 REMARK 500 LYS A 255 60.45 36.04 REMARK 500 ASN A 257 33.25 38.16 REMARK 500 ASP A 335 3.80 -67.86 REMARK 500 ASP A 391 -134.49 51.40 REMARK 500 HIS A 405 71.26 -109.76 REMARK 500 ASN A 564 15.74 -163.24 REMARK 500 THR A 570 40.92 -76.23 REMARK 500 ASN A 571 -17.52 -147.24 REMARK 500 LEU A 578 -88.71 -12.85 REMARK 500 ALA A 595 -52.81 -162.34 REMARK 500 THR A 602 -171.18 -170.28 REMARK 500 ASP A 605 -168.39 -75.95 REMARK 500 ASN A 614 47.77 71.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 564 ASN B 565 146.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 704 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 252 OD2 REMARK 620 2 ASN B 256 OD1 83.8 REMARK 620 3 LYS B 258 O 90.9 82.2 REMARK 620 4 ASP B 264 OD2 106.3 155.8 75.8 REMARK 620 5 ASP B 264 OD1 78.1 154.3 115.9 49.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 565 OD1 REMARK 620 2 LEU B 663 O 90.2 REMARK 620 3 ASP B 666 OD1 78.3 84.8 REMARK 620 4 ASP B 666 OD2 125.4 99.5 49.8 REMARK 620 5 HOH B 808 O 87.6 177.8 95.1 82.1 REMARK 620 6 HOH B 839 O 160.6 84.5 119.6 74.0 97.5 REMARK 620 7 HOH B 885 O 84.8 94.2 163.1 146.3 85.3 77.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 703 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 570 OD1 REMARK 620 2 ASN B 574 OD1 86.9 REMARK 620 3 VAL B 576 O 98.9 78.6 REMARK 620 4 ASP B 578 OD2 170.8 90.8 89.4 REMARK 620 5 GLU B 581 OE2 92.6 153.5 127.5 85.4 REMARK 620 6 GLU B 581 OE1 93.9 157.4 79.0 91.6 49.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 702 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 644 O REMARK 620 2 ASP B 647 OD1 87.5 REMARK 620 3 ASN B 649 OD1 172.6 99.7 REMARK 620 4 SER B 664 O 96.1 139.2 79.9 REMARK 620 5 HOH B 801 O 78.6 70.6 105.6 70.4 REMARK 620 6 HOH B 986 O 85.4 142.5 87.6 78.2 142.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 252 OD2 REMARK 620 2 ASN A 256 OD1 80.0 REMARK 620 3 LYS A 258 O 85.7 82.9 REMARK 620 4 ASP A 264 OD1 72.9 151.5 103.4 REMARK 620 5 ASP A 264 OD2 102.6 150.0 67.7 49.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 702 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 564 OD1 REMARK 620 2 LEU A 662 O 88.2 REMARK 620 3 ASP A 665 OD2 127.1 98.8 REMARK 620 4 ASP A 665 OD1 78.7 87.1 49.7 REMARK 620 5 HOH A 938 O 85.1 92.5 145.9 163.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 704 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 569 OD1 REMARK 620 2 ASN A 571 OD1 125.9 REMARK 620 3 ASN A 573 OD1 78.3 109.3 REMARK 620 4 VAL A 575 O 78.1 154.6 81.7 REMARK 620 5 ASP A 577 OD2 167.2 66.5 95.3 90.1 REMARK 620 6 GLU A 580 OE2 86.5 59.2 148.9 121.7 104.1 REMARK 620 7 GLU A 580 OE1 77.6 99.8 149.5 75.4 104.4 46.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 703 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 643 O REMARK 620 2 ASP A 646 OD1 94.0 REMARK 620 3 ASN A 648 OD1 175.4 90.7 REMARK 620 4 SER A 663 O 106.9 136.6 69.4 REMARK 620 5 HOH A 936 O 95.5 68.8 86.3 142.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 704 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JE0 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQRES CONFLICTS HAVE CAUSED BY REFINEMENT ARTIFACTS. DBREF 4JDZ B 235 679 UNP E5QTK7 E5QTK7_STAAH 235 678 DBREF 4JDZ A 236 673 UNP E5QTK7 E5QTK7_STAAH 236 673 SEQADV 4JDZ ILE B 254 UNP E5QTK7 ASP 254 ENGINEERED MUTATION SEQADV 4JDZ ALA B 522 UNP E5QTK7 GLU 522 SEE REMARK 999 SEQADV 4JDZ ALA B 557 UNP E5QTK7 GLY 557 SEE REMARK 999 SEQADV 4JDZ ALA B 595 UNP E5QTK7 LYS 595 SEE REMARK 999 SEQADV 4JDZ ALA B 596 UNP E5QTK7 THR 596 SEE REMARK 999 SEQADV 4JDZ ALA B 597 UNP E5QTK7 ASN 597 SEE REMARK 999 SEQADV 4JDZ ALA B 598 UNP E5QTK7 LYS 598 SEE REMARK 999 SEQADV 4JDZ ALA B 680 UNP E5QTK7 EXPRESSION TAG SEQADV 4JDZ ALA A 236 UNP E5QTK7 LYS 236 SEE REMARK 999 SEQADV 4JDZ ILE A 254 UNP E5QTK7 ASP 254 ENGINEERED MUTATION SEQADV 4JDZ ALA A 522 UNP E5QTK7 GLU 522 SEE REMARK 999 SEQADV 4JDZ ALA A 550G UNP E5QTK7 GLY 557 SEE REMARK 999 SEQADV 4JDZ ALA A 592 UNP E5QTK7 ASP 593 SEE REMARK 999 SEQADV 4JDZ ALA A 593 UNP E5QTK7 ASN 594 SEE REMARK 999 SEQADV 4JDZ ALA A 594 UNP E5QTK7 LYS 595 SEE REMARK 999 SEQADV 4JDZ ALA A 595 UNP E5QTK7 THR 596 SEE REMARK 999 SEQADV 4JDZ ALA A 596 UNP E5QTK7 ASN 597 SEE REMARK 999 SEQADV 4JDZ ALA A 640 UNP E5QTK7 ASN 641 SEE REMARK 999 SEQADV 4JDZ ALA A 672 UNP E5QTK7 LYS 672 SEE REMARK 999 SEQRES 1 B 445 SER LYS ASN VAL ASN ASP LEU ILE THR SER ASN THR THR SEQRES 2 B 445 LEU THR VAL VAL ASP ALA ILE LYS ASN ASN LYS ILE VAL SEQRES 3 B 445 PRO ALA GLN ASP TYR LEU ALA LEU LYS SER GLN ILE LYS SEQRES 4 B 445 VAL ASP ASP LYS VAL LYS SER GLY ASP TYR PHE THR ILE SEQRES 5 B 445 LYS TYR SER ASP THR VAL GLN VAL TYR GLY LEU ASN PRO SEQRES 6 B 445 GLU ASP ILE LYS ASN ILE GLY ASP ILE LYS ASP PRO ASN SEQRES 7 B 445 ASN GLY GLU THR ILE ALA THR ALA LYS HIS ASP THR ALA SEQRES 8 B 445 ASN ASN LEU ILE THR TYR THR PHE THR ASP TYR VAL ASP SEQRES 9 B 445 ARG PHE ASN SER VAL GLN MET GLY ILE ASN TYR SER ILE SEQRES 10 B 445 TYR MET ASP ALA ASP THR ILE PRO VAL SER LYS ASN ASP SEQRES 11 B 445 VAL GLU PHE ASN VAL THR ILE GLY ASN ASP THR THR LYS SEQRES 12 B 445 THR THR ALA ASN ILE GLN TYR PRO ASP TYR VAL SER ARG SEQRES 13 B 445 ASP ASN ASN SER ILE GLY SER ALA PHE THR GLU THR VAL SEQRES 14 B 445 SER HIS ALA GLY ASN ALA GLU ASP PRO GLY TYR TYR LYS SEQRES 15 B 445 GLN THR VAL TYR VAL ASN PRO SER GLU LYS SER LEU THR SEQRES 16 B 445 ASN ALA LYS LEU LYS VAL GLU ALA TYR HIS LYS ASP TYR SEQRES 17 B 445 PRO ASP ASN VAL GLY GLN ILE ASN LYS ASP VAL THR LYS SEQRES 18 B 445 ILE LYS ILE TYR GLN ALA PRO LYS ASP TYR VAL LEU ASN SEQRES 19 B 445 LYS GLY TYR ASP VAL ASN THR ASN GLN LEU ILE ASP VAL SEQRES 20 B 445 THR GLU GLN PHE LYS ASP LYS ILE THR TYR GLY ALA ASN SEQRES 21 B 445 ASP SER VAL ASN VAL ASP PHE GLY SER ILE ASN ASN SER SEQRES 22 B 445 TYR VAL VAL MET VAL ASP THR LYS PHE GLU TYR THR THR SEQRES 23 B 445 SER ALA SER PRO THR LEU VAL GLN MET ALA THR LEU THR SEQRES 24 B 445 SER ASP GLY ASN ARG SER VAL SER THR GLY ASN ALA LEU SEQRES 25 B 445 GLY PHE THR ASN ASN GLN SER GLY GLY ALA ALA GLN GLU SEQRES 26 B 445 VAL TYR LYS ILE GLY ASN TYR VAL TRP GLU ASP THR ASN SEQRES 27 B 445 LYS ASN GLY VAL GLN ASP LEU GLY GLU VAL GLY VAL LYS SEQRES 28 B 445 GLY VAL THR VAL VAL ALA TYR ASP ASN ALA ALA ALA ALA SEQRES 29 B 445 GLU VAL GLY ARG THR ILE THR ASP ASP LYS GLY GLY TYR SEQRES 30 B 445 LEU ILE PRO ASN LEU PRO ASN GLY ASP TYR ARG VAL GLU SEQRES 31 B 445 PHE SER ASN LEU PRO GLN GLY TYR GLU VAL THR PRO SER SEQRES 32 B 445 LYS GLN GLY ASN ASN GLU GLU LEU ASP SER ASN GLY VAL SEQRES 33 B 445 SER SER VAL ILE THR VAL ASN GLY LYS ASP ASN LEU SER SEQRES 34 B 445 ALA ASP LEU GLY ILE TYR LYS PRO LYS TYR ASN LEU GLY SEQRES 35 B 445 ASP TYR ALA SEQRES 1 A 438 ALA ASN VAL ASN ASP LEU ILE THR SER ASN THR THR LEU SEQRES 2 A 438 THR VAL VAL ASP ALA ILE LYS ASN ASN LYS ILE VAL PRO SEQRES 3 A 438 ALA GLN ASP TYR LEU ALA LEU LYS SER GLN ILE LYS VAL SEQRES 4 A 438 ASP ASP LYS VAL LYS SER GLY ASP TYR PHE THR ILE LYS SEQRES 5 A 438 TYR SER ASP THR VAL GLN VAL TYR GLY LEU ASN PRO GLU SEQRES 6 A 438 ASP ILE LYS ASN ILE GLY ASP ILE LYS ASP PRO ASN ASN SEQRES 7 A 438 GLY GLU THR ILE ALA THR ALA LYS HIS ASP THR ALA ASN SEQRES 8 A 438 ASN LEU ILE THR TYR THR PHE THR ASP TYR VAL ASP ARG SEQRES 9 A 438 PHE ASN SER VAL GLN MET GLY ILE ASN TYR SER ILE TYR SEQRES 10 A 438 MET ASP ALA ASP THR ILE PRO VAL SER LYS ASN ASP VAL SEQRES 11 A 438 GLU PHE ASN VAL THR ILE GLY ASN ASP THR THR LYS THR SEQRES 12 A 438 THR ALA ASN ILE GLN TYR PRO ASP TYR VAL SER ARG ASP SEQRES 13 A 438 ASN ASN SER ILE GLY SER ALA PHE THR GLU THR VAL SER SEQRES 14 A 438 HIS ALA GLY ASN ALA GLU ASP PRO GLY TYR TYR LYS GLN SEQRES 15 A 438 THR VAL TYR VAL ASN PRO SER GLU LYS SER LEU THR ASN SEQRES 16 A 438 ALA LYS LEU LYS VAL GLU ALA TYR HIS LYS ASP TYR PRO SEQRES 17 A 438 ASP ASN VAL GLY GLN ILE ASN LYS ASP VAL THR LYS ILE SEQRES 18 A 438 LYS ILE TYR GLN ALA PRO LYS ASP TYR VAL LEU ASN LYS SEQRES 19 A 438 GLY TYR ASP VAL ASN THR ASN GLN LEU ILE ASP VAL THR SEQRES 20 A 438 GLU GLN PHE LYS ASP LYS ILE THR TYR GLY ALA ASN ASP SEQRES 21 A 438 SER VAL ASN VAL ASP PHE GLY SER ILE ASN ASN SER TYR SEQRES 22 A 438 VAL VAL MET VAL ASP THR LYS PHE GLU TYR THR THR SER SEQRES 23 A 438 ALA SER PRO THR LEU VAL GLN MET ALA THR LEU THR SER SEQRES 24 A 438 ASP GLY ASN ARG SER VAL SER THR GLY ASN ALA LEU GLY SEQRES 25 A 438 PHE THR ASN ASN GLN SER GLY GLY ALA ALA GLN GLU VAL SEQRES 26 A 438 TYR LYS ILE GLY ASN TYR VAL TRP GLU ASP THR ASN LYS SEQRES 27 A 438 ASN GLY VAL GLN ASP LEU GLY GLU VAL GLY VAL LYS GLY SEQRES 28 A 438 VAL THR VAL VAL ALA TYR ALA ALA ALA ALA ALA LYS GLU SEQRES 29 A 438 VAL GLY ARG THR ILE THR ASP ASP LYS GLY GLY TYR LEU SEQRES 30 A 438 ILE PRO ASN LEU PRO ASN GLY ASP TYR ARG VAL GLU PHE SEQRES 31 A 438 SER ASN LEU PRO GLN GLY TYR GLU VAL THR PRO SER LYS SEQRES 32 A 438 GLN GLY ALA ASN GLU GLU LEU ASP SER ASN GLY VAL SER SEQRES 33 A 438 SER VAL ILE THR VAL ASN GLY LYS ASP ASN LEU SER ALA SEQRES 34 A 438 ASP LEU GLY ILE TYR LYS PRO ALA TYR HET CA B 701 1 HET CA B 702 1 HET CA B 703 1 HET CA B 704 1 HET CA A 701 1 HET CA A 702 1 HET CA A 703 1 HET CA A 704 1 HETNAM CA CALCIUM ION FORMUL 3 CA 8(CA 2+) FORMUL 11 HOH *496(H2 O) HELIX 1 1 VAL B 238 ASP B 240 5 3 HELIX 2 2 ASN B 298 ILE B 305 5 8 HELIX 3 3 THR B 324 ASN B 326 5 3 HELIX 4 4 ASP B 335 PHE B 340 1 6 HELIX 5 5 ALA B 355 ILE B 358 5 4 HELIX 6 6 ASN B 474 LEU B 478 5 5 HELIX 7 7 THR B 482 LYS B 486 5 5 HELIX 8 8 VAL A 238 ASP A 240 5 3 HELIX 9 9 ASN A 298 ILE A 305 5 8 HELIX 10 10 THR A 324 ASN A 326 5 3 HELIX 11 11 ASP A 335 PHE A 340 1 6 HELIX 12 12 ALA A 355 ILE A 358 5 4 HELIX 13 13 ASN A 474 LEU A 478 5 5 HELIX 14 14 THR A 482 LYS A 486 5 5 SHEET 1 A 4 ILE B 242 VAL B 251 0 SHEET 2 A 4 TYR B 265 VAL B 274 -1 O LYS B 273 N THR B 243 SHEET 3 A 4 GLN B 344 MET B 353 -1 O MET B 345 N ILE B 272 SHEET 4 A 4 VAL B 292 GLN B 293 -1 N GLN B 293 O TYR B 352 SHEET 1 B 6 ILE B 308 LYS B 309 0 SHEET 2 B 6 THR B 316 ASP B 323 -1 O ILE B 317 N ILE B 308 SHEET 3 B 6 LEU B 328 PHE B 333 -1 O LEU B 328 N ASP B 323 SHEET 4 B 6 TYR B 283 TYR B 288 -1 N PHE B 284 O TYR B 331 SHEET 5 B 6 LYS B 362 ILE B 371 -1 O THR B 370 N LYS B 287 SHEET 6 B 6 ASP B 374 ILE B 382 -1 O THR B 378 N PHE B 367 SHEET 1 C 6 VAL B 388 ARG B 390 0 SHEET 2 C 6 ASN B 393 SER B 404 -1 O ILE B 395 N VAL B 388 SHEET 3 C 6 GLY B 413 VAL B 421 -1 O TYR B 414 N VAL B 403 SHEET 4 C 6 TYR B 508 LYS B 515 -1 O VAL B 512 N GLN B 417 SHEET 5 C 6 LYS B 455 GLN B 460 -1 N LYS B 457 O MET B 511 SHEET 6 C 6 ILE B 479 ASP B 480 -1 O ILE B 479 N GLN B 460 SHEET 1 D 5 ILE B 489 GLY B 492 0 SHEET 2 D 5 SER B 496 ILE B 504 -1 O ASN B 498 N THR B 490 SHEET 3 D 5 LEU B 428 GLU B 436 -1 N LEU B 428 O ILE B 504 SHEET 4 D 5 THR B 525 SER B 534 -1 O MET B 529 N GLU B 436 SHEET 5 D 5 ASN B 537 GLY B 547 -1 O THR B 542 N ALA B 530 SHEET 1 E 4 GLY B 610 LEU B 616 0 SHEET 2 E 4 TYR B 561 GLU B 569 -1 N TYR B 561 O LEU B 616 SHEET 3 E 4 ASN B 662 TYR B 670 1 O ILE B 669 N TRP B 568 SHEET 4 E 4 GLU B 633 VAL B 634 -1 N GLU B 633 O TYR B 670 SHEET 1 F 4 GLU B 599 ILE B 604 0 SHEET 2 F 4 THR B 588 ASP B 593 -1 N ALA B 591 O VAL B 600 SHEET 3 F 4 GLY B 619 SER B 626 -1 O GLU B 624 N VAL B 590 SHEET 4 F 4 SER B 652 VAL B 657 -1 O ILE B 655 N TYR B 621 SHEET 1 G 4 ILE A 242 VAL A 251 0 SHEET 2 G 4 TYR A 265 VAL A 274 -1 O LYS A 273 N THR A 243 SHEET 3 G 4 GLN A 344 MET A 353 -1 O MET A 345 N ILE A 272 SHEET 4 G 4 VAL A 292 GLN A 293 -1 N GLN A 293 O TYR A 352 SHEET 1 H 6 ILE A 308 LYS A 309 0 SHEET 2 H 6 THR A 316 ASP A 323 -1 O ILE A 317 N ILE A 308 SHEET 3 H 6 LEU A 328 PHE A 333 -1 O LEU A 328 N ASP A 323 SHEET 4 H 6 TYR A 283 TYR A 288 -1 N ILE A 286 O ILE A 329 SHEET 5 H 6 LYS A 362 ILE A 371 -1 O THR A 370 N LYS A 287 SHEET 6 H 6 ASP A 374 ILE A 382 -1 O ASP A 374 N ILE A 371 SHEET 1 I 6 VAL A 388 ARG A 390 0 SHEET 2 I 6 ASN A 393 SER A 404 -1 O ILE A 395 N VAL A 388 SHEET 3 I 6 GLY A 413 VAL A 421 -1 O THR A 418 N ALA A 398 SHEET 4 I 6 TYR A 508 LYS A 515 -1 O TYR A 508 N VAL A 421 SHEET 5 I 6 LYS A 455 GLN A 460 -1 N LYS A 457 O MET A 511 SHEET 6 I 6 ILE A 479 ASP A 480 -1 O ILE A 479 N GLN A 460 SHEET 1 J 5 ILE A 489 GLY A 492 0 SHEET 2 J 5 SER A 496 ILE A 504 -1 O ASN A 498 N THR A 490 SHEET 3 J 5 LEU A 428 GLU A 436 -1 N LEU A 428 O ILE A 504 SHEET 4 J 5 THR A 525 THR A 533 -1 O THR A 531 N LYS A 434 SHEET 5 J 5 VAL A 540 GLY A 547 -1 O THR A 542 N ALA A 530 SHEET 1 K 4 GLY A 609 LEU A 615 0 SHEET 2 K 4 TYR A 560 GLU A 568 -1 N TYR A 560 O LEU A 615 SHEET 3 K 4 LEU A 666 TYR A 669 1 O LEU A 666 N TYR A 565 SHEET 4 K 4 GLU A 632 VAL A 633 -1 N GLU A 632 O TYR A 669 SHEET 1 L 4 GLY A 600 ILE A 603 0 SHEET 2 L 4 THR A 587 TYR A 591 -1 N VAL A 588 O THR A 602 SHEET 3 L 4 ASP A 619 SER A 625 -1 O ARG A 621 N TYR A 591 SHEET 4 L 4 SER A 651 THR A 655 -1 O ILE A 654 N TYR A 620 LINK OD2 ASP B 252 CA CA B 704 1555 1555 2.39 LINK OD1 ASN B 256 CA CA B 704 1555 1555 2.45 LINK O LYS B 258 CA CA B 704 1555 1555 2.27 LINK OD2 ASP B 264 CA CA B 704 1555 1555 2.62 LINK OD1 ASP B 264 CA CA B 704 1555 1555 2.64 LINK OD1 ASN B 565 CA CA B 701 1555 1555 2.25 LINK OD1 ASP B 570 CA CA B 703 1555 1555 2.29 LINK OD1 ASN B 574 CA CA B 703 1555 1555 2.47 LINK O VAL B 576 CA CA B 703 1555 1555 2.37 LINK OD2 ASP B 578 CA CA B 703 1555 1555 2.39 LINK OE2 GLU B 581 CA CA B 703 1555 1555 2.49 LINK OE1 GLU B 581 CA CA B 703 1555 1555 2.76 LINK O GLU B 644 CA CA B 702 1555 1555 2.45 LINK OD1 ASP B 647 CA CA B 702 1555 1555 2.43 LINK OD1 ASN B 649 CA CA B 702 1555 1555 2.36 LINK O LEU B 663 CA CA B 701 1555 1555 2.29 LINK O SER B 664 CA CA B 702 1555 1555 2.52 LINK OD1 ASP B 666 CA CA B 701 1555 1555 2.62 LINK OD2 ASP B 666 CA CA B 701 1555 1555 2.63 LINK CA CA B 701 O HOH B 808 1555 1555 2.26 LINK CA CA B 701 O HOH B 839 1555 1555 2.48 LINK CA CA B 701 O HOH B 885 1555 1555 2.40 LINK CA CA B 702 O HOH B 801 1555 1555 2.42 LINK CA CA B 702 O HOH B 986 1555 1555 2.84 LINK OD2 ASP A 252 CA CA A 701 1555 1555 2.58 LINK OD1 ASN A 256 CA CA A 701 1555 1555 2.50 LINK O LYS A 258 CA CA A 701 1555 1555 2.38 LINK OD1 ASP A 264 CA CA A 701 1555 1555 2.56 LINK OD2 ASP A 264 CA CA A 701 1555 1555 2.70 LINK OD1 ASN A 564 CA CA A 702 1555 1555 2.41 LINK OD1 ASP A 569 CA CA A 704 1555 1555 2.52 LINK OD1 ASN A 571 CA CA A 704 1555 1555 3.10 LINK OD1 ASN A 573 CA CA A 704 1555 1555 2.60 LINK O VAL A 575 CA CA A 704 1555 1555 2.53 LINK OD2 ASP A 577 CA CA A 704 1555 1555 2.82 LINK OE2 GLU A 580 CA CA A 704 1555 1555 2.78 LINK OE1 GLU A 580 CA CA A 704 1555 1555 2.79 LINK O GLU A 643 CA CA A 703 1555 1555 2.68 LINK OD1 ASP A 646 CA CA A 703 1555 1555 2.61 LINK OD1 ASN A 648 CA CA A 703 1555 1555 2.58 LINK O LEU A 662 CA CA A 702 1555 1555 2.39 LINK O SER A 663 CA CA A 703 1555 1555 2.46 LINK OD2 ASP A 665 CA CA A 702 1555 1555 2.53 LINK OD1 ASP A 665 CA CA A 702 1555 1555 2.68 LINK CA CA A 702 O HOH A 938 1555 1555 2.53 LINK CA CA A 703 O HOH A 936 1555 1555 2.50 CISPEP 1 GLY A 563 ASN A 564 0 5.70 SITE 1 AC1 6 ASN B 565 LEU B 663 ASP B 666 HOH B 808 SITE 2 AC1 6 HOH B 839 HOH B 885 SITE 1 AC2 6 GLU B 644 ASP B 647 ASN B 649 SER B 664 SITE 2 AC2 6 HOH B 801 HOH B 986 SITE 1 AC3 6 ASP B 570 ASN B 572 ASN B 574 VAL B 576 SITE 2 AC3 6 ASP B 578 GLU B 581 SITE 1 AC4 5 ASP B 252 ILE B 254 ASN B 256 LYS B 258 SITE 2 AC4 5 ASP B 264 SITE 1 AC5 5 ASP A 252 ILE A 254 ASN A 256 LYS A 258 SITE 2 AC5 5 ASP A 264 SITE 1 AC6 4 ASN A 564 LEU A 662 ASP A 665 HOH A 938 SITE 1 AC7 5 GLU A 643 ASP A 646 ASN A 648 SER A 663 SITE 2 AC7 5 HOH A 936 SITE 1 AC8 6 ASP A 569 ASN A 571 ASN A 573 VAL A 575 SITE 2 AC8 6 ASP A 577 GLU A 580 CRYST1 74.410 73.880 90.030 90.00 102.42 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013439 0.000000 0.002960 0.00000 SCALE2 0.000000 0.013535 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011374 0.00000