data_4JEL # _entry.id 4JEL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4JEL RCSB RCSB077947 WWPDB D_1000077947 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4JEM . unspecified PDB 4JEN . unspecified # _pdbx_database_status.entry_id 4JEL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-02-27 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sikowitz, M.D.' 1 'Cooper, L.E.' 2 'Begley, T.P.' 3 'Kaminski, P.A.' 4 'Ealick, S.E.' 5 # _citation.id primary _citation.title 'Reversal of the substrate specificity of CMP N-glycosidase to dCMP.' _citation.journal_abbrev Biochemistry _citation.journal_volume 52 _citation.page_first 4037 _citation.page_last 4047 _citation.year 2013 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23659472 _citation.pdbx_database_id_DOI 10.1021/bi400316p # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Sikowitz, M.D.' 1 primary 'Cooper, L.E.' 2 primary 'Begley, T.P.' 3 primary 'Kaminski, P.A.' 4 primary 'Ealick, S.E.' 5 # _cell.length_a 97.819 _cell.length_b 97.819 _cell.length_c 61.893 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 4JEL _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 62 2 2' _symmetry.entry_id 4JEL _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 180 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'CMP/hydroxymethyl CMP hydrolase' 20549.219 1 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 3 water nat water 18.015 108 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GSDKIHHHHHHSSGENLYFQGH(MSE)TTTPKPRTAPAVGSVFLGGPFRQLVDPRTGV(MSE)SSGDQNVFSRLI EHFESRGTTVYNAHRREAWGAEFLSPAEATRLDHDEIKAADVFVAFPGVPASPGTHVEIGWASG(MSE)GKP(MSE)VLL LERDEDYAFLVTGLESQANVEILRFSGTEEIVERLDGAVARVLGR ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSDKIHHHHHHSSGENLYFQGHMTTTPKPRTAPAVGSVFLGGPFRQLVDPRTGVMSSGDQNVFSRLIEHFESRGTTVYN AHRREAWGAEFLSPAEATRLDHDEIKAADVFVAFPGVPASPGTHVEIGWASGMGKPMVLLLERDEDYAFLVTGLESQANV EILRFSGTEEIVERLDGAVARVLGR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 SER n 1 4 ASP n 1 5 LYS n 1 6 ILE n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 HIS n 1 12 HIS n 1 13 SER n 1 14 SER n 1 15 GLY n 1 16 GLU n 1 17 ASN n 1 18 LEU n 1 19 TYR n 1 20 PHE n 1 21 GLN n 1 22 GLY n 1 23 HIS n 1 24 MSE n 1 25 THR n 1 26 THR n 1 27 THR n 1 28 PRO n 1 29 LYS n 1 30 PRO n 1 31 ARG n 1 32 THR n 1 33 ALA n 1 34 PRO n 1 35 ALA n 1 36 VAL n 1 37 GLY n 1 38 SER n 1 39 VAL n 1 40 PHE n 1 41 LEU n 1 42 GLY n 1 43 GLY n 1 44 PRO n 1 45 PHE n 1 46 ARG n 1 47 GLN n 1 48 LEU n 1 49 VAL n 1 50 ASP n 1 51 PRO n 1 52 ARG n 1 53 THR n 1 54 GLY n 1 55 VAL n 1 56 MSE n 1 57 SER n 1 58 SER n 1 59 GLY n 1 60 ASP n 1 61 GLN n 1 62 ASN n 1 63 VAL n 1 64 PHE n 1 65 SER n 1 66 ARG n 1 67 LEU n 1 68 ILE n 1 69 GLU n 1 70 HIS n 1 71 PHE n 1 72 GLU n 1 73 SER n 1 74 ARG n 1 75 GLY n 1 76 THR n 1 77 THR n 1 78 VAL n 1 79 TYR n 1 80 ASN n 1 81 ALA n 1 82 HIS n 1 83 ARG n 1 84 ARG n 1 85 GLU n 1 86 ALA n 1 87 TRP n 1 88 GLY n 1 89 ALA n 1 90 GLU n 1 91 PHE n 1 92 LEU n 1 93 SER n 1 94 PRO n 1 95 ALA n 1 96 GLU n 1 97 ALA n 1 98 THR n 1 99 ARG n 1 100 LEU n 1 101 ASP n 1 102 HIS n 1 103 ASP n 1 104 GLU n 1 105 ILE n 1 106 LYS n 1 107 ALA n 1 108 ALA n 1 109 ASP n 1 110 VAL n 1 111 PHE n 1 112 VAL n 1 113 ALA n 1 114 PHE n 1 115 PRO n 1 116 GLY n 1 117 VAL n 1 118 PRO n 1 119 ALA n 1 120 SER n 1 121 PRO n 1 122 GLY n 1 123 THR n 1 124 HIS n 1 125 VAL n 1 126 GLU n 1 127 ILE n 1 128 GLY n 1 129 TRP n 1 130 ALA n 1 131 SER n 1 132 GLY n 1 133 MSE n 1 134 GLY n 1 135 LYS n 1 136 PRO n 1 137 MSE n 1 138 VAL n 1 139 LEU n 1 140 LEU n 1 141 LEU n 1 142 GLU n 1 143 ARG n 1 144 ASP n 1 145 GLU n 1 146 ASP n 1 147 TYR n 1 148 ALA n 1 149 PHE n 1 150 LEU n 1 151 VAL n 1 152 THR n 1 153 GLY n 1 154 LEU n 1 155 GLU n 1 156 SER n 1 157 GLN n 1 158 ALA n 1 159 ASN n 1 160 VAL n 1 161 GLU n 1 162 ILE n 1 163 LEU n 1 164 ARG n 1 165 PHE n 1 166 SER n 1 167 GLY n 1 168 THR n 1 169 GLU n 1 170 GLU n 1 171 ILE n 1 172 VAL n 1 173 GLU n 1 174 ARG n 1 175 LEU n 1 176 ASP n 1 177 GLY n 1 178 ALA n 1 179 VAL n 1 180 ALA n 1 181 ARG n 1 182 VAL n 1 183 LEU n 1 184 GLY n 1 185 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene MilB _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Streptomyces rimofaciens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 504097 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'B834(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'modified pET28a' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code B4Y381_9ACTO _struct_ref.pdbx_db_accession B4Y381 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTTTPKPRTAPAVGSVFLGGPFRQLVDPRTGVMSSGDQNVFSRLIEHFESRGTTVYNAHRREAWGAEFLSPAEATRLDHD EIKAADVFVAFPGVPASPGTHVEIGWASGMGKPMVLLLERDEDYAFLVTGLESQANVEILRFSGTEEIVERLDGAVARVL GR ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4JEL _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 24 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 185 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession B4Y381 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 162 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 162 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4JEL MSE A 1 ? UNP B4Y381 ? ? 'EXPRESSION TAG' -22 1 1 4JEL GLY A 2 ? UNP B4Y381 ? ? 'EXPRESSION TAG' -21 2 1 4JEL SER A 3 ? UNP B4Y381 ? ? 'EXPRESSION TAG' -20 3 1 4JEL ASP A 4 ? UNP B4Y381 ? ? 'EXPRESSION TAG' -19 4 1 4JEL LYS A 5 ? UNP B4Y381 ? ? 'EXPRESSION TAG' -18 5 1 4JEL ILE A 6 ? UNP B4Y381 ? ? 'EXPRESSION TAG' -17 6 1 4JEL HIS A 7 ? UNP B4Y381 ? ? 'EXPRESSION TAG' -16 7 1 4JEL HIS A 8 ? UNP B4Y381 ? ? 'EXPRESSION TAG' -15 8 1 4JEL HIS A 9 ? UNP B4Y381 ? ? 'EXPRESSION TAG' -14 9 1 4JEL HIS A 10 ? UNP B4Y381 ? ? 'EXPRESSION TAG' -13 10 1 4JEL HIS A 11 ? UNP B4Y381 ? ? 'EXPRESSION TAG' -12 11 1 4JEL HIS A 12 ? UNP B4Y381 ? ? 'EXPRESSION TAG' -11 12 1 4JEL SER A 13 ? UNP B4Y381 ? ? 'EXPRESSION TAG' -10 13 1 4JEL SER A 14 ? UNP B4Y381 ? ? 'EXPRESSION TAG' -9 14 1 4JEL GLY A 15 ? UNP B4Y381 ? ? 'EXPRESSION TAG' -8 15 1 4JEL GLU A 16 ? UNP B4Y381 ? ? 'EXPRESSION TAG' -7 16 1 4JEL ASN A 17 ? UNP B4Y381 ? ? 'EXPRESSION TAG' -6 17 1 4JEL LEU A 18 ? UNP B4Y381 ? ? 'EXPRESSION TAG' -5 18 1 4JEL TYR A 19 ? UNP B4Y381 ? ? 'EXPRESSION TAG' -4 19 1 4JEL PHE A 20 ? UNP B4Y381 ? ? 'EXPRESSION TAG' -3 20 1 4JEL GLN A 21 ? UNP B4Y381 ? ? 'EXPRESSION TAG' -2 21 1 4JEL GLY A 22 ? UNP B4Y381 ? ? 'EXPRESSION TAG' -1 22 1 4JEL HIS A 23 ? UNP B4Y381 ? ? 'EXPRESSION TAG' 0 23 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4JEL _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.09 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 41.13 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 4.2 _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '8% PEG 1000, 0.1 M phosphate-citrate, 0.2 M lithium sulfate, pH 4.2, VAPOR DIFFUSION, HANGING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2010-10-20 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Cryo-cooled Si(111) double crystal' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97918 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97918 _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-C # _reflns.entry_id 4JEL _reflns.B_iso_Wilson_estimate 27.960 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3 _reflns.d_resolution_high 1.95 _reflns.d_resolution_low 50 _reflns.number_all 24181 _reflns.number_obs 23697 _reflns.percent_possible_obs 98.2 _reflns.pdbx_Rmerge_I_obs 0.052 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 40.1 _reflns.pdbx_redundancy 5.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_obs _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_redundancy _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.95 1.98 ? 96.9 ? ? ? ? ? ? ? ? ? 1 1 1.98 2.02 ? 97.8 ? ? ? ? ? ? ? ? ? 2 1 2.02 2.06 ? 96.7 ? ? ? ? ? ? ? ? ? 3 1 2.06 2.10 ? 97.9 ? ? ? ? ? ? ? ? ? 4 1 2.10 2.15 ? 97.7 ? ? ? ? ? ? ? ? ? 5 1 2.15 2.20 ? 97.5 ? ? ? ? ? ? ? ? ? 6 1 # _refine.entry_id 4JEL _refine.ls_d_res_high 1.9520 _refine.ls_d_res_low 42.3570 _refine.pdbx_ls_sigma_F 1.890 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.2700 _refine.ls_number_reflns_obs 23688 _refine.ls_number_reflns_all 23697 _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details random _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2002 _refine.ls_R_factor_R_work 0.1981 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2434 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.9300 _refine.ls_number_reflns_R_free 1168 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 26.5855 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.1800 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8582 _refine.B_iso_max 51.420 _refine.B_iso_min 12.430 _refine.pdbx_overall_phase_error 21.1700 _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1149 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 108 _refine_hist.number_atoms_total 1267 _refine_hist.d_res_high 1.9520 _refine_hist.d_res_low 42.3570 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 1183 0.007 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 1607 1.083 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 176 0.071 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 212 0.005 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 417 11.833 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 1.9524 2.0412 8 97.0000 2780 . 0.1987 0.2421 . 167 . 2947 . . 'X-RAY DIFFRACTION' 2.0412 2.1488 8 98.0000 2753 . 0.1891 0.2283 . 163 . 2916 . . 'X-RAY DIFFRACTION' 2.1488 2.2835 8 98.0000 2802 . 0.1926 0.2431 . 155 . 2957 . . 'X-RAY DIFFRACTION' 2.2835 2.4597 8 98.0000 2836 . 0.1935 0.2471 . 122 . 2958 . . 'X-RAY DIFFRACTION' 2.4597 2.7072 8 98.0000 2804 . 0.2003 0.2490 . 146 . 2950 . . 'X-RAY DIFFRACTION' 2.7072 3.0989 8 99.0000 2824 . 0.2041 0.2386 . 156 . 2980 . . 'X-RAY DIFFRACTION' 3.0989 3.9038 8 99.0000 2843 . 0.1959 0.2373 . 131 . 2974 . . 'X-RAY DIFFRACTION' 3.9038 42.3668 8 99.0000 2878 . 0.2005 0.2525 . 128 . 3006 . . 'X-RAY DIFFRACTION' # _struct.entry_id 4JEL _struct.title 'Structure of MilB Streptomyces rimofaciens CMP N-glycosidase' _struct.pdbx_descriptor 'CMP/hydroxymethyl CMP hydrolase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4JEL _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'CMP N-glycosidase, mildiomycin biosynthesis, Hydrolase' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PHE A 45 ? VAL A 49 ? PHE A 22 VAL A 26 5 ? 5 HELX_P HELX_P2 2 SER A 57 ? SER A 73 ? SER A 34 SER A 50 1 ? 17 HELX_P HELX_P3 3 ALA A 81 ? GLU A 85 ? ALA A 58 GLU A 62 1 ? 5 HELX_P HELX_P4 4 ALA A 86 ? ALA A 89 ? ALA A 63 ALA A 66 5 ? 4 HELX_P HELX_P5 5 SER A 93 ? ALA A 108 ? SER A 70 ALA A 85 1 ? 16 HELX_P HELX_P6 6 SER A 120 ? GLY A 134 ? SER A 97 GLY A 111 1 ? 15 HELX_P HELX_P7 7 ALA A 148 ? GLY A 153 ? ALA A 125 GLY A 130 1 ? 6 HELX_P HELX_P8 8 GLY A 167 ? GLY A 184 ? GLY A 144 GLY A 161 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A VAL 55 C ? ? ? 1_555 A MSE 56 N ? ? A VAL 32 A MSE 33 1_555 ? ? ? ? ? ? ? 1.331 ? covale2 covale ? ? A MSE 56 C ? ? ? 1_555 A SER 57 N ? ? A MSE 33 A SER 34 1_555 ? ? ? ? ? ? ? 1.331 ? covale3 covale ? ? A GLY 132 C ? ? ? 1_555 A MSE 133 N ? ? A GLY 109 A MSE 110 1_555 ? ? ? ? ? ? ? 1.330 ? covale4 covale ? ? A MSE 133 C ? ? ? 1_555 A GLY 134 N ? ? A MSE 110 A GLY 111 1_555 ? ? ? ? ? ? ? 1.329 ? covale5 covale ? ? A PRO 136 C ? ? ? 1_555 A MSE 137 N ? ? A PRO 113 A MSE 114 1_555 ? ? ? ? ? ? ? 1.331 ? covale6 covale ? ? A MSE 137 C ? ? ? 1_555 A VAL 138 N ? ? A MSE 114 A VAL 115 1_555 ? ? ? ? ? ? ? 1.325 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id VAL _struct_mon_prot_cis.label_seq_id 117 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id VAL _struct_mon_prot_cis.auth_seq_id 94 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 118 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 95 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -2.13 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 77 ? ASN A 80 ? THR A 54 ASN A 57 A 2 SER A 38 ? GLY A 42 ? SER A 15 GLY A 19 A 3 VAL A 110 ? ALA A 113 ? VAL A 87 ALA A 90 A 4 MSE A 137 ? GLU A 142 ? MSE A 114 GLU A 119 A 5 VAL A 160 ? PHE A 165 ? VAL A 137 PHE A 142 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O TYR A 79 ? O TYR A 56 N LEU A 41 ? N LEU A 18 A 2 3 N PHE A 40 ? N PHE A 17 O VAL A 112 ? O VAL A 89 A 3 4 N ALA A 113 ? N ALA A 90 O LEU A 140 ? O LEU A 117 A 4 5 N LEU A 139 ? N LEU A 116 O LEU A 163 ? O LEU A 140 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 10 'BINDING SITE FOR RESIDUE SO4 A 201' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE SO4 A 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 PHE A 45 ? PHE A 22 . ? 1_555 ? 2 AC1 10 ARG A 46 ? ARG A 23 . ? 1_555 ? 3 AC1 10 SER A 120 ? SER A 97 . ? 1_555 ? 4 AC1 10 PRO A 121 ? PRO A 98 . ? 1_555 ? 5 AC1 10 GLY A 122 ? GLY A 99 . ? 1_555 ? 6 AC1 10 HOH D . ? HOH A 321 . ? 11_556 ? 7 AC1 10 HOH D . ? HOH A 328 . ? 1_555 ? 8 AC1 10 HOH D . ? HOH A 339 . ? 11_556 ? 9 AC1 10 HOH D . ? HOH A 351 . ? 1_555 ? 10 AC1 10 HOH D . ? HOH A 370 . ? 11_556 ? 11 AC2 3 ARG A 74 ? ARG A 51 . ? 7_556 ? 12 AC2 3 ARG A 143 ? ARG A 120 . ? 1_555 ? 13 AC2 3 HOH D . ? HOH A 325 . ? 1_555 ? # _atom_sites.entry_id 4JEL _atom_sites.fract_transf_matrix[1][1] 0.010223 _atom_sites.fract_transf_matrix[1][2] 0.005902 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011804 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016157 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -22 ? ? ? A . n A 1 2 GLY 2 -21 ? ? ? A . n A 1 3 SER 3 -20 ? ? ? A . n A 1 4 ASP 4 -19 ? ? ? A . n A 1 5 LYS 5 -18 ? ? ? A . n A 1 6 ILE 6 -17 ? ? ? A . n A 1 7 HIS 7 -16 ? ? ? A . n A 1 8 HIS 8 -15 ? ? ? A . n A 1 9 HIS 9 -14 ? ? ? A . n A 1 10 HIS 10 -13 ? ? ? A . n A 1 11 HIS 11 -12 ? ? ? A . n A 1 12 HIS 12 -11 ? ? ? A . n A 1 13 SER 13 -10 ? ? ? A . n A 1 14 SER 14 -9 ? ? ? A . n A 1 15 GLY 15 -8 ? ? ? A . n A 1 16 GLU 16 -7 ? ? ? A . n A 1 17 ASN 17 -6 ? ? ? A . n A 1 18 LEU 18 -5 ? ? ? A . n A 1 19 TYR 19 -4 ? ? ? A . n A 1 20 PHE 20 -3 ? ? ? A . n A 1 21 GLN 21 -2 ? ? ? A . n A 1 22 GLY 22 -1 ? ? ? A . n A 1 23 HIS 23 0 ? ? ? A . n A 1 24 MSE 24 1 ? ? ? A . n A 1 25 THR 25 2 ? ? ? A . n A 1 26 THR 26 3 ? ? ? A . n A 1 27 THR 27 4 ? ? ? A . n A 1 28 PRO 28 5 ? ? ? A . n A 1 29 LYS 29 6 ? ? ? A . n A 1 30 PRO 30 7 ? ? ? A . n A 1 31 ARG 31 8 ? ? ? A . n A 1 32 THR 32 9 ? ? ? A . n A 1 33 ALA 33 10 ? ? ? A . n A 1 34 PRO 34 11 11 PRO PRO A . n A 1 35 ALA 35 12 12 ALA ALA A . n A 1 36 VAL 36 13 13 VAL VAL A . n A 1 37 GLY 37 14 14 GLY GLY A . n A 1 38 SER 38 15 15 SER SER A . n A 1 39 VAL 39 16 16 VAL VAL A . n A 1 40 PHE 40 17 17 PHE PHE A . n A 1 41 LEU 41 18 18 LEU LEU A . n A 1 42 GLY 42 19 19 GLY GLY A . n A 1 43 GLY 43 20 20 GLY GLY A . n A 1 44 PRO 44 21 21 PRO PRO A . n A 1 45 PHE 45 22 22 PHE PHE A . n A 1 46 ARG 46 23 23 ARG ARG A . n A 1 47 GLN 47 24 24 GLN GLN A . n A 1 48 LEU 48 25 25 LEU LEU A . n A 1 49 VAL 49 26 26 VAL VAL A . n A 1 50 ASP 50 27 27 ASP ASP A . n A 1 51 PRO 51 28 28 PRO PRO A . n A 1 52 ARG 52 29 29 ARG ARG A . n A 1 53 THR 53 30 30 THR THR A . n A 1 54 GLY 54 31 31 GLY GLY A . n A 1 55 VAL 55 32 32 VAL VAL A . n A 1 56 MSE 56 33 33 MSE MSE A . n A 1 57 SER 57 34 34 SER SER A . n A 1 58 SER 58 35 35 SER SER A . n A 1 59 GLY 59 36 36 GLY GLY A . n A 1 60 ASP 60 37 37 ASP ASP A . n A 1 61 GLN 61 38 38 GLN GLN A . n A 1 62 ASN 62 39 39 ASN ASN A . n A 1 63 VAL 63 40 40 VAL VAL A . n A 1 64 PHE 64 41 41 PHE PHE A . n A 1 65 SER 65 42 42 SER SER A . n A 1 66 ARG 66 43 43 ARG ARG A . n A 1 67 LEU 67 44 44 LEU LEU A . n A 1 68 ILE 68 45 45 ILE ILE A . n A 1 69 GLU 69 46 46 GLU GLU A . n A 1 70 HIS 70 47 47 HIS HIS A . n A 1 71 PHE 71 48 48 PHE PHE A . n A 1 72 GLU 72 49 49 GLU GLU A . n A 1 73 SER 73 50 50 SER SER A . n A 1 74 ARG 74 51 51 ARG ARG A . n A 1 75 GLY 75 52 52 GLY GLY A . n A 1 76 THR 76 53 53 THR THR A . n A 1 77 THR 77 54 54 THR THR A . n A 1 78 VAL 78 55 55 VAL VAL A . n A 1 79 TYR 79 56 56 TYR TYR A . n A 1 80 ASN 80 57 57 ASN ASN A . n A 1 81 ALA 81 58 58 ALA ALA A . n A 1 82 HIS 82 59 59 HIS HIS A . n A 1 83 ARG 83 60 60 ARG ARG A . n A 1 84 ARG 84 61 61 ARG ARG A . n A 1 85 GLU 85 62 62 GLU GLU A . n A 1 86 ALA 86 63 63 ALA ALA A . n A 1 87 TRP 87 64 64 TRP TRP A . n A 1 88 GLY 88 65 65 GLY GLY A . n A 1 89 ALA 89 66 66 ALA ALA A . n A 1 90 GLU 90 67 67 GLU GLU A . n A 1 91 PHE 91 68 68 PHE PHE A . n A 1 92 LEU 92 69 69 LEU LEU A . n A 1 93 SER 93 70 70 SER SER A . n A 1 94 PRO 94 71 71 PRO PRO A . n A 1 95 ALA 95 72 72 ALA ALA A . n A 1 96 GLU 96 73 73 GLU GLU A . n A 1 97 ALA 97 74 74 ALA ALA A . n A 1 98 THR 98 75 75 THR THR A . n A 1 99 ARG 99 76 76 ARG ARG A . n A 1 100 LEU 100 77 77 LEU LEU A . n A 1 101 ASP 101 78 78 ASP ASP A . n A 1 102 HIS 102 79 79 HIS HIS A . n A 1 103 ASP 103 80 80 ASP ASP A . n A 1 104 GLU 104 81 81 GLU GLU A . n A 1 105 ILE 105 82 82 ILE ILE A . n A 1 106 LYS 106 83 83 LYS LYS A . n A 1 107 ALA 107 84 84 ALA ALA A . n A 1 108 ALA 108 85 85 ALA ALA A . n A 1 109 ASP 109 86 86 ASP ASP A . n A 1 110 VAL 110 87 87 VAL VAL A . n A 1 111 PHE 111 88 88 PHE PHE A . n A 1 112 VAL 112 89 89 VAL VAL A . n A 1 113 ALA 113 90 90 ALA ALA A . n A 1 114 PHE 114 91 91 PHE PHE A . n A 1 115 PRO 115 92 92 PRO PRO A . n A 1 116 GLY 116 93 93 GLY GLY A . n A 1 117 VAL 117 94 94 VAL VAL A . n A 1 118 PRO 118 95 95 PRO PRO A . n A 1 119 ALA 119 96 96 ALA ALA A . n A 1 120 SER 120 97 97 SER SER A . n A 1 121 PRO 121 98 98 PRO PRO A . n A 1 122 GLY 122 99 99 GLY GLY A . n A 1 123 THR 123 100 100 THR THR A . n A 1 124 HIS 124 101 101 HIS HIS A . n A 1 125 VAL 125 102 102 VAL VAL A . n A 1 126 GLU 126 103 103 GLU GLU A . n A 1 127 ILE 127 104 104 ILE ILE A . n A 1 128 GLY 128 105 105 GLY GLY A . n A 1 129 TRP 129 106 106 TRP TRP A . n A 1 130 ALA 130 107 107 ALA ALA A . n A 1 131 SER 131 108 108 SER SER A . n A 1 132 GLY 132 109 109 GLY GLY A . n A 1 133 MSE 133 110 110 MSE MSE A . n A 1 134 GLY 134 111 111 GLY GLY A . n A 1 135 LYS 135 112 112 LYS LYS A . n A 1 136 PRO 136 113 113 PRO PRO A . n A 1 137 MSE 137 114 114 MSE MSE A . n A 1 138 VAL 138 115 115 VAL VAL A . n A 1 139 LEU 139 116 116 LEU LEU A . n A 1 140 LEU 140 117 117 LEU LEU A . n A 1 141 LEU 141 118 118 LEU LEU A . n A 1 142 GLU 142 119 119 GLU GLU A . n A 1 143 ARG 143 120 120 ARG ARG A . n A 1 144 ASP 144 121 121 ASP ASP A . n A 1 145 GLU 145 122 122 GLU GLU A . n A 1 146 ASP 146 123 123 ASP ASP A . n A 1 147 TYR 147 124 124 TYR TYR A . n A 1 148 ALA 148 125 125 ALA ALA A . n A 1 149 PHE 149 126 126 PHE PHE A . n A 1 150 LEU 150 127 127 LEU LEU A . n A 1 151 VAL 151 128 128 VAL VAL A . n A 1 152 THR 152 129 129 THR THR A . n A 1 153 GLY 153 130 130 GLY GLY A . n A 1 154 LEU 154 131 131 LEU LEU A . n A 1 155 GLU 155 132 132 GLU GLU A . n A 1 156 SER 156 133 133 SER SER A . n A 1 157 GLN 157 134 134 GLN GLN A . n A 1 158 ALA 158 135 135 ALA ALA A . n A 1 159 ASN 159 136 136 ASN ASN A . n A 1 160 VAL 160 137 137 VAL VAL A . n A 1 161 GLU 161 138 138 GLU GLU A . n A 1 162 ILE 162 139 139 ILE ILE A . n A 1 163 LEU 163 140 140 LEU LEU A . n A 1 164 ARG 164 141 141 ARG ARG A . n A 1 165 PHE 165 142 142 PHE PHE A . n A 1 166 SER 166 143 143 SER SER A . n A 1 167 GLY 167 144 144 GLY GLY A . n A 1 168 THR 168 145 145 THR THR A . n A 1 169 GLU 169 146 146 GLU GLU A . n A 1 170 GLU 170 147 147 GLU GLU A . n A 1 171 ILE 171 148 148 ILE ILE A . n A 1 172 VAL 172 149 149 VAL VAL A . n A 1 173 GLU 173 150 150 GLU GLU A . n A 1 174 ARG 174 151 151 ARG ARG A . n A 1 175 LEU 175 152 152 LEU LEU A . n A 1 176 ASP 176 153 153 ASP ASP A . n A 1 177 GLY 177 154 154 GLY GLY A . n A 1 178 ALA 178 155 155 ALA ALA A . n A 1 179 VAL 179 156 156 VAL VAL A . n A 1 180 ALA 180 157 157 ALA ALA A . n A 1 181 ARG 181 158 158 ARG ARG A . n A 1 182 VAL 182 159 159 VAL VAL A . n A 1 183 LEU 183 160 160 LEU LEU A . n A 1 184 GLY 184 161 161 GLY GLY A . n A 1 185 ARG 185 162 162 ARG ARG A . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 56 A MSE 33 ? MET SELENOMETHIONINE 2 A MSE 133 A MSE 110 ? MET SELENOMETHIONINE 3 A MSE 137 A MSE 114 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2 A,B,C,D 2 1,3 A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3020 ? 1 MORE -80 ? 1 'SSA (A^2)' 13140 ? 2 'ABSA (A^2)' 1980 ? 2 MORE -61 ? 2 'SSA (A^2)' 14180 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 11_556 -x+y,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 61.8930000000 3 'crystal symmetry operation' 7_556 y,x,-z+5/3 -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 103.1550000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 330 ? D HOH . 2 1 A HOH 340 ? D HOH . 3 1 A HOH 406 ? D HOH . # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2013-09-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 PHENIX 1.8.1_1168 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 ADSC Quantum ? ? ? ? 'data collection' ? ? ? 4 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 5 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 6 AutoSol . ? ? ? ? phasing ? ? ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id PHE _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 22 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -126.07 _pdbx_validate_torsion.psi -76.77 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 67 ? CG ? A GLU 90 CG 2 1 Y 1 A GLU 67 ? CD ? A GLU 90 CD 3 1 Y 1 A GLU 67 ? OE1 ? A GLU 90 OE1 4 1 Y 1 A GLU 67 ? OE2 ? A GLU 90 OE2 5 1 Y 1 A ARG 76 ? CG ? A ARG 99 CG 6 1 Y 1 A ARG 76 ? CD ? A ARG 99 CD 7 1 Y 1 A ARG 76 ? NE ? A ARG 99 NE 8 1 Y 1 A ARG 76 ? CZ ? A ARG 99 CZ 9 1 Y 1 A ARG 76 ? NH1 ? A ARG 99 NH1 10 1 Y 1 A ARG 76 ? NH2 ? A ARG 99 NH2 11 1 Y 1 A GLU 146 ? CG ? A GLU 169 CG 12 1 Y 1 A GLU 146 ? CD ? A GLU 169 CD 13 1 Y 1 A GLU 146 ? OE1 ? A GLU 169 OE1 14 1 Y 1 A GLU 146 ? OE2 ? A GLU 169 OE2 15 1 Y 1 A LEU 160 ? CG ? A LEU 183 CG 16 1 Y 1 A LEU 160 ? CD1 ? A LEU 183 CD1 17 1 Y 1 A LEU 160 ? CD2 ? A LEU 183 CD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -22 ? A MSE 1 2 1 Y 1 A GLY -21 ? A GLY 2 3 1 Y 1 A SER -20 ? A SER 3 4 1 Y 1 A ASP -19 ? A ASP 4 5 1 Y 1 A LYS -18 ? A LYS 5 6 1 Y 1 A ILE -17 ? A ILE 6 7 1 Y 1 A HIS -16 ? A HIS 7 8 1 Y 1 A HIS -15 ? A HIS 8 9 1 Y 1 A HIS -14 ? A HIS 9 10 1 Y 1 A HIS -13 ? A HIS 10 11 1 Y 1 A HIS -12 ? A HIS 11 12 1 Y 1 A HIS -11 ? A HIS 12 13 1 Y 1 A SER -10 ? A SER 13 14 1 Y 1 A SER -9 ? A SER 14 15 1 Y 1 A GLY -8 ? A GLY 15 16 1 Y 1 A GLU -7 ? A GLU 16 17 1 Y 1 A ASN -6 ? A ASN 17 18 1 Y 1 A LEU -5 ? A LEU 18 19 1 Y 1 A TYR -4 ? A TYR 19 20 1 Y 1 A PHE -3 ? A PHE 20 21 1 Y 1 A GLN -2 ? A GLN 21 22 1 Y 1 A GLY -1 ? A GLY 22 23 1 Y 1 A HIS 0 ? A HIS 23 24 1 Y 1 A MSE 1 ? A MSE 24 25 1 Y 1 A THR 2 ? A THR 25 26 1 Y 1 A THR 3 ? A THR 26 27 1 Y 1 A THR 4 ? A THR 27 28 1 Y 1 A PRO 5 ? A PRO 28 29 1 Y 1 A LYS 6 ? A LYS 29 30 1 Y 1 A PRO 7 ? A PRO 30 31 1 Y 1 A ARG 8 ? A ARG 31 32 1 Y 1 A THR 9 ? A THR 32 33 1 Y 1 A ALA 10 ? A ALA 33 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 201 1 SO4 SO4 A . C 2 SO4 1 202 2 SO4 SO4 A . D 3 HOH 1 301 1 HOH HOH A . D 3 HOH 2 302 2 HOH HOH A . D 3 HOH 3 303 3 HOH HOH A . D 3 HOH 4 304 4 HOH HOH A . D 3 HOH 5 305 5 HOH HOH A . D 3 HOH 6 306 6 HOH HOH A . D 3 HOH 7 307 7 HOH HOH A . D 3 HOH 8 308 8 HOH HOH A . D 3 HOH 9 309 9 HOH HOH A . D 3 HOH 10 310 10 HOH HOH A . D 3 HOH 11 311 11 HOH HOH A . D 3 HOH 12 312 12 HOH HOH A . D 3 HOH 13 313 13 HOH HOH A . D 3 HOH 14 314 14 HOH HOH A . D 3 HOH 15 315 15 HOH HOH A . D 3 HOH 16 316 16 HOH HOH A . D 3 HOH 17 317 17 HOH HOH A . D 3 HOH 18 318 18 HOH HOH A . D 3 HOH 19 319 19 HOH HOH A . D 3 HOH 20 320 20 HOH HOH A . D 3 HOH 21 321 21 HOH HOH A . D 3 HOH 22 322 22 HOH HOH A . D 3 HOH 23 323 23 HOH HOH A . D 3 HOH 24 324 24 HOH HOH A . D 3 HOH 25 325 25 HOH HOH A . D 3 HOH 26 326 26 HOH HOH A . D 3 HOH 27 327 27 HOH HOH A . D 3 HOH 28 328 28 HOH HOH A . D 3 HOH 29 329 29 HOH HOH A . D 3 HOH 30 330 30 HOH HOH A . D 3 HOH 31 331 31 HOH HOH A . D 3 HOH 32 332 32 HOH HOH A . D 3 HOH 33 333 33 HOH HOH A . D 3 HOH 34 334 34 HOH HOH A . D 3 HOH 35 335 35 HOH HOH A . D 3 HOH 36 336 36 HOH HOH A . D 3 HOH 37 337 37 HOH HOH A . D 3 HOH 38 338 39 HOH HOH A . D 3 HOH 39 339 40 HOH HOH A . D 3 HOH 40 340 41 HOH HOH A . D 3 HOH 41 341 42 HOH HOH A . D 3 HOH 42 342 43 HOH HOH A . D 3 HOH 43 343 44 HOH HOH A . D 3 HOH 44 344 45 HOH HOH A . D 3 HOH 45 345 46 HOH HOH A . D 3 HOH 46 346 47 HOH HOH A . D 3 HOH 47 347 48 HOH HOH A . D 3 HOH 48 348 49 HOH HOH A . D 3 HOH 49 349 50 HOH HOH A . D 3 HOH 50 350 51 HOH HOH A . D 3 HOH 51 351 52 HOH HOH A . D 3 HOH 52 352 53 HOH HOH A . D 3 HOH 53 353 54 HOH HOH A . D 3 HOH 54 354 55 HOH HOH A . D 3 HOH 55 355 56 HOH HOH A . D 3 HOH 56 356 57 HOH HOH A . D 3 HOH 57 357 58 HOH HOH A . D 3 HOH 58 358 59 HOH HOH A . D 3 HOH 59 359 60 HOH HOH A . D 3 HOH 60 360 61 HOH HOH A . D 3 HOH 61 361 62 HOH HOH A . D 3 HOH 62 362 63 HOH HOH A . D 3 HOH 63 363 64 HOH HOH A . D 3 HOH 64 364 65 HOH HOH A . D 3 HOH 65 365 66 HOH HOH A . D 3 HOH 66 366 67 HOH HOH A . D 3 HOH 67 367 68 HOH HOH A . D 3 HOH 68 368 69 HOH HOH A . D 3 HOH 69 369 70 HOH HOH A . D 3 HOH 70 370 71 HOH HOH A . D 3 HOH 71 371 72 HOH HOH A . D 3 HOH 72 372 73 HOH HOH A . D 3 HOH 73 373 74 HOH HOH A . D 3 HOH 74 374 75 HOH HOH A . D 3 HOH 75 375 76 HOH HOH A . D 3 HOH 76 376 77 HOH HOH A . D 3 HOH 77 377 78 HOH HOH A . D 3 HOH 78 378 79 HOH HOH A . D 3 HOH 79 379 80 HOH HOH A . D 3 HOH 80 380 81 HOH HOH A . D 3 HOH 81 381 82 HOH HOH A . D 3 HOH 82 382 83 HOH HOH A . D 3 HOH 83 383 84 HOH HOH A . D 3 HOH 84 384 85 HOH HOH A . D 3 HOH 85 385 86 HOH HOH A . D 3 HOH 86 386 87 HOH HOH A . D 3 HOH 87 387 88 HOH HOH A . D 3 HOH 88 388 90 HOH HOH A . D 3 HOH 89 389 91 HOH HOH A . D 3 HOH 90 390 92 HOH HOH A . D 3 HOH 91 391 93 HOH HOH A . D 3 HOH 92 392 94 HOH HOH A . D 3 HOH 93 393 95 HOH HOH A . D 3 HOH 94 394 96 HOH HOH A . D 3 HOH 95 395 97 HOH HOH A . D 3 HOH 96 396 99 HOH HOH A . D 3 HOH 97 397 100 HOH HOH A . D 3 HOH 98 398 101 HOH HOH A . D 3 HOH 99 399 102 HOH HOH A . D 3 HOH 100 400 103 HOH HOH A . D 3 HOH 101 401 104 HOH HOH A . D 3 HOH 102 402 105 HOH HOH A . D 3 HOH 103 403 106 HOH HOH A . D 3 HOH 104 404 108 HOH HOH A . D 3 HOH 105 405 109 HOH HOH A . D 3 HOH 106 406 110 HOH HOH A . D 3 HOH 107 407 113 HOH HOH A . D 3 HOH 108 408 114 HOH HOH A . #