HEADER FLUORESCENT PROTEIN 28-FEB-13 4JF9 TITLE CRYSTAL STRUCTURE OF THE WILD TYPE RED FLUORESCENT PROTEIN LANRFP TITLE 2 (BRANCHIOSTOMA LANCEOLATUM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RED FLUORESCENT PROTEIN BLFP-R5; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRANCHIOSTOMA LANCEOLATUM; SOURCE 3 ORGANISM_COMMON: COMMON LANCELET; SOURCE 4 ORGANISM_TAXID: 7740; SOURCE 5 GENE: BLFP-R5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS LANRFP, RED FLUORESCENT PROTEIN, BETA-BARREL, GLY-TYR-GLY KEYWDS 2 CHROMOPHORE, CEPHALOCHORDATE, FLUORESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR V.Z.PLETNEV,N.V.PLETNEVA,S.V.PLETNEV REVDAT 3 06-DEC-23 4JF9 1 REMARK REVDAT 2 20-SEP-23 4JF9 1 SEQADV LINK REVDAT 1 18-SEP-13 4JF9 0 JRNL AUTH V.Z.PLETNEV,N.V.PLETNEVA,K.A.LUKYANOV,E.A.SOUSLOVA, JRNL AUTH 2 A.F.FRADKOV,D.M.CHUDAKOV,T.CHEPURNYKH,I.V.YAMPOLSKY, JRNL AUTH 3 A.WLODAWER,Z.DAUTER,S.PLETNEV JRNL TITL STRUCTURE OF THE RED FLUORESCENT PROTEIN FROM A LANCELET JRNL TITL 2 (BRANCHIOSTOMA LANCEOLATUM): A NOVEL GYG CHROMOPHORE JRNL TITL 3 COVALENTLY BOUND TO A NEARBY TYROSINE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 69 1850 2013 JRNL REFN ISSN 0907-4449 JRNL PMID 23999308 JRNL DOI 10.1107/S0907444913015424 REMARK 2 REMARK 2 RESOLUTION. 2.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.8 REMARK 3 NUMBER OF REFLECTIONS : 30172 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1235 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.33 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 832 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 33.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.1730 REMARK 3 BIN FREE R VALUE SET COUNT : 38 REMARK 3 BIN FREE R VALUE : 0.2070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3491 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 328 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.211 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.184 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3640 ; 0.024 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4939 ; 1.996 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 437 ; 7.268 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 174 ;35.910 ;24.368 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 590 ;16.072 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;24.487 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 495 ; 0.145 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2848 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2172 ; 1.106 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3496 ; 2.101 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1468 ; 3.656 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1440 ; 5.663 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4JF9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000077971. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34207 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.330 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.17500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.63000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 4HVF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 9 MG/ML OF LANRFP IN 20 MM TRIS PH REMARK 280 8.0, 200 MM NACL, 5 MM EDTA MIXED WITH AN EQUAL AMOUNT OF REMARK 280 RESERVOIR SOLUTIONS - 1M NA-CITRATE, 0.1M TRIS PH 7.0 , VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.04800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 104.09600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 52.04800 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 104.09600 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 52.04800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 104.09600 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 52.04800 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 104.09600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 GLY A 0 REMARK 465 ALA A 220 REMARK 465 MET B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 GLY B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR B 203 -164.96 -118.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HVF RELATED DB: PDB REMARK 900 GREEN FLUORESCENT PROTEIN LANGFP (BRANCHIOSTOMA LANCEOLATUM) REMARK 900 RELATED ID: 2G3O RELATED DB: PDB REMARK 900 GREEN FLUORESCENT PROTEIN COPGFP (PONTELLIDAE PLUMATA) REMARK 900 RELATED ID: 2DD7 RELATED DB: PDB REMARK 900 MARINE COPEPOD (CHIRIDIUS POPPEI) REMARK 900 RELATED ID: 4JEO RELATED DB: PDB REMARK 900 RELATED ID: 4JGE RELATED DB: PDB DBREF 4JF9 A -7 220 UNP B1PND0 B1PND0_BRALA 1 220 DBREF 4JF9 B -7 220 UNP B1PND0 B1PND0_BRALA 1 220 SEQADV 4JF9 HIS A -6 UNP B1PND0 EXPRESSION TAG SEQADV 4JF9 HIS A -5 UNP B1PND0 EXPRESSION TAG SEQADV 4JF9 HIS A -4 UNP B1PND0 EXPRESSION TAG SEQADV 4JF9 HIS A -3 UNP B1PND0 EXPRESSION TAG SEQADV 4JF9 HIS A -2 UNP B1PND0 EXPRESSION TAG SEQADV 4JF9 HIS A -1 UNP B1PND0 EXPRESSION TAG SEQADV 4JF9 GLY A 0 UNP B1PND0 EXPRESSION TAG SEQADV 4JF9 SER A 1 UNP B1PND0 MET 1 ENGINEERED MUTATION SEQADV 4JF9 CR2 A 58 UNP B1PND0 GLY 58 CHROMOPHORE SEQADV 4JF9 CR2 A 58 UNP B1PND0 TYR 59 CHROMOPHORE SEQADV 4JF9 CR2 A 58 UNP B1PND0 GLY 60 CHROMOPHORE SEQADV 4JF9 HIS B -6 UNP B1PND0 EXPRESSION TAG SEQADV 4JF9 HIS B -5 UNP B1PND0 EXPRESSION TAG SEQADV 4JF9 HIS B -4 UNP B1PND0 EXPRESSION TAG SEQADV 4JF9 HIS B -3 UNP B1PND0 EXPRESSION TAG SEQADV 4JF9 HIS B -2 UNP B1PND0 EXPRESSION TAG SEQADV 4JF9 HIS B -1 UNP B1PND0 EXPRESSION TAG SEQADV 4JF9 GLY B 0 UNP B1PND0 EXPRESSION TAG SEQADV 4JF9 SER B 1 UNP B1PND0 MET 1 ENGINEERED MUTATION SEQADV 4JF9 CR2 B 58 UNP B1PND0 GLY 58 CHROMOPHORE SEQADV 4JF9 CR2 B 58 UNP B1PND0 TYR 59 CHROMOPHORE SEQADV 4JF9 CR2 B 58 UNP B1PND0 GLY 60 CHROMOPHORE SEQRES 1 A 226 MET HIS HIS HIS HIS HIS HIS GLY SER PRO LEU PRO ALA SEQRES 2 A 226 THR HIS ASP LEU HIS ILE SER GLY SER ILE ASN GLY HIS SEQRES 3 A 226 GLU PHE ASP LEU GLU GLY SER GLY LYS GLY ASN ALA LYS SEQRES 4 A 226 GLU GLY TYR GLN GLU LEU HIS LEU LYS SER ASN LYS GLY SEQRES 5 A 226 ASP LEU SER PHE SER PRO TRP ILE LEU VAL PRO ASN ILE SEQRES 6 A 226 CR2 PHE TYR GLN TYR LEU PRO PHE PRO ASP GLY ALA MET SEQRES 7 A 226 SER PRO TYR GLN ALA ALA MET HIS ASP GLY SER GLY TYR SEQRES 8 A 226 VAL MET HIS ARG SER MET GLN PHE GLU ASP GLY ALA MET SEQRES 9 A 226 LEU HIS SER ASP HIS ARG TYR ILE TYR LYS GLY ASN HIS SEQRES 10 A 226 ILE LYS GLY GLU PHE ARG LEU THR GLY SER GLY PHE PRO SEQRES 11 A 226 ALA ASP GLY PRO VAL MET THR ASN SER LEU THR ALA ALA SEQRES 12 A 226 ASP TRP CYS VAL ASP LYS LEU LEU TYR PRO ASN ASP ASN SEQRES 13 A 226 THR ILE ILE GLY LYS PHE ASP TRP THR TYR THR THR THR SEQRES 14 A 226 SER GLY LYS ARG TYR GLN SER ASP VAL GLN THR ASN VAL SEQRES 15 A 226 THR PHE GLY LYS PRO ILE ALA ALA ASP ILE LEU LYS LYS SEQRES 16 A 226 GLN PRO MET PHE VAL PHE ARG LYS VAL GLU LEU LYS HIS SEQRES 17 A 226 THR LYS THR GLU LEU ASN PHE LYS GLN TRP GLN LYS ALA SEQRES 18 A 226 PHE GLN ASP ILE ALA SEQRES 1 B 226 MET HIS HIS HIS HIS HIS HIS GLY SER PRO LEU PRO ALA SEQRES 2 B 226 THR HIS ASP LEU HIS ILE SER GLY SER ILE ASN GLY HIS SEQRES 3 B 226 GLU PHE ASP LEU GLU GLY SER GLY LYS GLY ASN ALA LYS SEQRES 4 B 226 GLU GLY TYR GLN GLU LEU HIS LEU LYS SER ASN LYS GLY SEQRES 5 B 226 ASP LEU SER PHE SER PRO TRP ILE LEU VAL PRO ASN ILE SEQRES 6 B 226 CR2 PHE TYR GLN TYR LEU PRO PHE PRO ASP GLY ALA MET SEQRES 7 B 226 SER PRO TYR GLN ALA ALA MET HIS ASP GLY SER GLY TYR SEQRES 8 B 226 VAL MET HIS ARG SER MET GLN PHE GLU ASP GLY ALA MET SEQRES 9 B 226 LEU HIS SER ASP HIS ARG TYR ILE TYR LYS GLY ASN HIS SEQRES 10 B 226 ILE LYS GLY GLU PHE ARG LEU THR GLY SER GLY PHE PRO SEQRES 11 B 226 ALA ASP GLY PRO VAL MET THR ASN SER LEU THR ALA ALA SEQRES 12 B 226 ASP TRP CYS VAL ASP LYS LEU LEU TYR PRO ASN ASP ASN SEQRES 13 B 226 THR ILE ILE GLY LYS PHE ASP TRP THR TYR THR THR THR SEQRES 14 B 226 SER GLY LYS ARG TYR GLN SER ASP VAL GLN THR ASN VAL SEQRES 15 B 226 THR PHE GLY LYS PRO ILE ALA ALA ASP ILE LEU LYS LYS SEQRES 16 B 226 GLN PRO MET PHE VAL PHE ARG LYS VAL GLU LEU LYS HIS SEQRES 17 B 226 THR LYS THR GLU LEU ASN PHE LYS GLN TRP GLN LYS ALA SEQRES 18 B 226 PHE GLN ASP ILE ALA MODRES 4JF9 CR2 A 58 GLY MODRES 4JF9 CR2 A 58 TYR MODRES 4JF9 CR2 A 58 GLY MODRES 4JF9 CR2 B 58 GLY MODRES 4JF9 CR2 B 58 TYR MODRES 4JF9 CR2 B 58 GLY HET CR2 A 58 19 HET CR2 B 58 19 HETNAM CR2 {(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]- HETNAM 2 CR2 5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID HETSYN CR2 CHROMOPHORE (GLY-TYR-GLY) FORMUL 1 CR2 2(C13 H13 N3 O4) FORMUL 3 HOH *328(H2 O) HELIX 1 1 SER A 49 VAL A 54 5 6 HELIX 2 2 PHE A 61 LEU A 65 5 5 HELIX 3 3 PHE A 67 ALA A 71 5 5 HELIX 4 4 SER A 73 ASP A 81 1 9 HELIX 5 5 ALA A 183 LYS A 188 1 6 HELIX 6 6 SER B 49 VAL B 54 5 6 HELIX 7 7 PHE B 61 LEU B 65 5 5 HELIX 8 8 PHE B 67 ALA B 71 5 5 HELIX 9 9 SER B 73 ASP B 81 1 9 HELIX 10 10 ALA B 183 LYS B 188 1 6 SHEET 1 A13 LEU A 134 ALA A 137 0 SHEET 2 A13 THR A 151 THR A 162 -1 O THR A 161 N THR A 135 SHEET 3 A13 TYR A 168 PHE A 178 -1 O VAL A 176 N ILE A 152 SHEET 4 A13 TYR A 85 PHE A 93 -1 N HIS A 88 O ASN A 175 SHEET 5 A13 MET A 98 LYS A 108 -1 O LEU A 99 N MET A 91 SHEET 6 A13 HIS A 111 SER A 121 -1 O LYS A 113 N ILE A 106 SHEET 7 A13 THR A 6 ILE A 15 1 N ASP A 8 O GLY A 114 SHEET 8 A13 HIS A 18 GLY A 28 -1 O GLY A 26 N HIS A 7 SHEET 9 A13 GLN A 35 SER A 41 -1 O LYS A 40 N GLU A 23 SHEET 10 A13 GLU A 206 PHE A 216 -1 O PHE A 209 N LEU A 37 SHEET 11 A13 MET A 192 HIS A 202 -1 N PHE A 193 O PHE A 216 SHEET 12 A13 CYS A 140 ASN A 148 -1 N LEU A 144 O MET A 192 SHEET 13 A13 THR A 151 THR A 162 -1 O LYS A 155 N LYS A 143 SHEET 1 B13 LEU B 134 ALA B 137 0 SHEET 2 B13 THR B 151 THR B 162 -1 O THR B 161 N THR B 135 SHEET 3 B13 TYR B 168 PHE B 178 -1 O VAL B 176 N ILE B 152 SHEET 4 B13 TYR B 85 PHE B 93 -1 N SER B 90 O GLN B 173 SHEET 5 B13 MET B 98 LYS B 108 -1 O HIS B 103 N MET B 87 SHEET 6 B13 HIS B 111 SER B 121 -1 O LYS B 113 N ILE B 106 SHEET 7 B13 THR B 6 ILE B 15 1 N SER B 14 O GLY B 120 SHEET 8 B13 HIS B 18 ASN B 29 -1 O LEU B 22 N ILE B 11 SHEET 9 B13 TYR B 34 SER B 41 -1 O GLU B 36 N LYS B 27 SHEET 10 B13 GLU B 206 PHE B 216 -1 O LEU B 207 N LEU B 39 SHEET 11 B13 MET B 192 HIS B 202 -1 N PHE B 193 O PHE B 216 SHEET 12 B13 CYS B 140 ASN B 148 -1 N LEU B 144 O MET B 192 SHEET 13 B13 THR B 151 THR B 162 -1 O ILE B 153 N LEU B 145 LINK C ILE A 57 N1 CR2 A 58 1555 1555 1.34 LINK C3 CR2 A 58 N PHE A 61 1555 1555 1.34 LINK CB2 CR2 A 58 OH TYR A 62 1555 1555 1.39 LINK C ILE B 57 N1 CR2 B 58 1555 1555 1.34 LINK C3 CR2 B 58 N PHE B 61 1555 1555 1.34 LINK CB2 CR2 B 58 OH TYR B 62 1555 1555 1.39 CISPEP 1 VAL A 54 PRO A 55 0 13.36 CISPEP 2 GLN A 190 PRO A 191 0 -4.68 CISPEP 3 VAL B 54 PRO B 55 0 15.47 CISPEP 4 GLN B 190 PRO B 191 0 -4.73 CRYST1 133.634 133.634 156.144 90.00 90.00 120.00 P 64 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007483 0.004320 0.000000 0.00000 SCALE2 0.000000 0.008641 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006404 0.00000