data_4JGC # _entry.id 4JGC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4JGC pdb_00004jgc 10.2210/pdb4jgc/pdb NDB NA2297 ? ? RCSB RCSB078010 ? ? WWPDB D_1000078010 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4FNC _pdbx_database_related.details 'HUMAN TDG IN A POST-REACTIVE COMPLEX WITH 5-HYDROXYMETHYLURACIL (5HMU)' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4JGC _pdbx_database_status.recvd_initial_deposition_date 2013-02-28 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hashimoto, H.' 1 'Zhang, X.' 2 'Cheng, X.' 3 # _citation.id primary _citation.title 'Activity and crystal structure of human thymine DNA glycosylase mutant N140A with 5-carboxylcytosine DNA at low pH.' _citation.journal_abbrev 'Dna Repair' _citation.journal_volume 12 _citation.page_first 535 _citation.page_last 540 _citation.year 2013 _citation.journal_id_ASTM ? _citation.country NE _citation.journal_id_ISSN 1568-7864 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23680598 _citation.pdbx_database_id_DOI 10.1016/j.dnarep.2013.04.003 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hashimoto, H.' 1 ? primary 'Zhang, X.' 2 ? primary 'Cheng, X.' 3 ? # _cell.entry_id 4JGC _cell.length_a 91.486 _cell.length_b 53.555 _cell.length_c 81.902 _cell.angle_alpha 90.00 _cell.angle_beta 95.10 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4JGC _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'G/T mismatch-specific thymine DNA glycosylase' 23027.645 1 3.2.2.29 N140A 'UNP residues 111-308' ? 2 polymer syn oligonucleotide 8646.565 1 ? ? ? ? 3 polymer syn 'oligonucleotide containing 5-carboxylcytosine' 8473.431 1 ? ? ? ? 4 non-polymer syn '4-amino-2-oxo-1,2-dihydropyrimidine-5-carboxylic acid' 155.111 1 ? ? ? ? 5 water nat water 18.015 22 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Thymine-DNA glycosylase' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSHMASFNGVSEAELLTKTLPDILTFNLDIVIIGIAPGLMAAYKGHHYPGPGNHFWKCLFMSGLSEVQLNHMDDHTLPGK YGIGFTNMVERTTPGSKDLSSKEFREGGRILVQKLQKYQPRIAVFNGKCIYEIFSKEVFGVKVKNLEFGLQPHKIPDTET LCYVMPSSSARCAQFPRAQDKVHYYIKLKDLRDQLKGIERNMDV ; ;GSHMASFNGVSEAELLTKTLPDILTFNLDIVIIGIAPGLMAAYKGHHYPGPGNHFWKCLFMSGLSEVQLNHMDDHTLPGK YGIGFTNMVERTTPGSKDLSSKEFREGGRILVQKLQKYQPRIAVFNGKCIYEIFSKEVFGVKVKNLEFGLQPHKIPDTET LCYVMPSSSARCAQFPRAQDKVHYYIKLKDLRDQLKGIERNMDV ; A ? 2 polydeoxyribonucleotide no no ;(DC)(DA)(DG)(DC)(DT)(DC)(DT)(DG)(DT)(DA)(DC)(DG)(DT)(DG)(DA)(DG)(DC)(DA)(DG)(DT) (DG)(DG)(DA)(DC)(DA)(DG)(DC)(DT) ; CAGCTCTGTACGTGAGCAGTGGACAGCT C ? 3 polydeoxyribonucleotide no yes ;(DA)(DG)(DC)(DT)(DG)(DT)(DC)(DC)(DA)(DC)(DT)(DG)(DC)(DT)(DC)(DA)(ORP)(DG)(DT) (DA)(DC)(DA)(DG)(DA)(DG)(DC)(DT)(DG) ; AGCTGTCCACTGCTCAXGTACAGAGCTG D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 ALA n 1 6 SER n 1 7 PHE n 1 8 ASN n 1 9 GLY n 1 10 VAL n 1 11 SER n 1 12 GLU n 1 13 ALA n 1 14 GLU n 1 15 LEU n 1 16 LEU n 1 17 THR n 1 18 LYS n 1 19 THR n 1 20 LEU n 1 21 PRO n 1 22 ASP n 1 23 ILE n 1 24 LEU n 1 25 THR n 1 26 PHE n 1 27 ASN n 1 28 LEU n 1 29 ASP n 1 30 ILE n 1 31 VAL n 1 32 ILE n 1 33 ILE n 1 34 GLY n 1 35 ILE n 1 36 ALA n 1 37 PRO n 1 38 GLY n 1 39 LEU n 1 40 MET n 1 41 ALA n 1 42 ALA n 1 43 TYR n 1 44 LYS n 1 45 GLY n 1 46 HIS n 1 47 HIS n 1 48 TYR n 1 49 PRO n 1 50 GLY n 1 51 PRO n 1 52 GLY n 1 53 ASN n 1 54 HIS n 1 55 PHE n 1 56 TRP n 1 57 LYS n 1 58 CYS n 1 59 LEU n 1 60 PHE n 1 61 MET n 1 62 SER n 1 63 GLY n 1 64 LEU n 1 65 SER n 1 66 GLU n 1 67 VAL n 1 68 GLN n 1 69 LEU n 1 70 ASN n 1 71 HIS n 1 72 MET n 1 73 ASP n 1 74 ASP n 1 75 HIS n 1 76 THR n 1 77 LEU n 1 78 PRO n 1 79 GLY n 1 80 LYS n 1 81 TYR n 1 82 GLY n 1 83 ILE n 1 84 GLY n 1 85 PHE n 1 86 THR n 1 87 ASN n 1 88 MET n 1 89 VAL n 1 90 GLU n 1 91 ARG n 1 92 THR n 1 93 THR n 1 94 PRO n 1 95 GLY n 1 96 SER n 1 97 LYS n 1 98 ASP n 1 99 LEU n 1 100 SER n 1 101 SER n 1 102 LYS n 1 103 GLU n 1 104 PHE n 1 105 ARG n 1 106 GLU n 1 107 GLY n 1 108 GLY n 1 109 ARG n 1 110 ILE n 1 111 LEU n 1 112 VAL n 1 113 GLN n 1 114 LYS n 1 115 LEU n 1 116 GLN n 1 117 LYS n 1 118 TYR n 1 119 GLN n 1 120 PRO n 1 121 ARG n 1 122 ILE n 1 123 ALA n 1 124 VAL n 1 125 PHE n 1 126 ASN n 1 127 GLY n 1 128 LYS n 1 129 CYS n 1 130 ILE n 1 131 TYR n 1 132 GLU n 1 133 ILE n 1 134 PHE n 1 135 SER n 1 136 LYS n 1 137 GLU n 1 138 VAL n 1 139 PHE n 1 140 GLY n 1 141 VAL n 1 142 LYS n 1 143 VAL n 1 144 LYS n 1 145 ASN n 1 146 LEU n 1 147 GLU n 1 148 PHE n 1 149 GLY n 1 150 LEU n 1 151 GLN n 1 152 PRO n 1 153 HIS n 1 154 LYS n 1 155 ILE n 1 156 PRO n 1 157 ASP n 1 158 THR n 1 159 GLU n 1 160 THR n 1 161 LEU n 1 162 CYS n 1 163 TYR n 1 164 VAL n 1 165 MET n 1 166 PRO n 1 167 SER n 1 168 SER n 1 169 SER n 1 170 ALA n 1 171 ARG n 1 172 CYS n 1 173 ALA n 1 174 GLN n 1 175 PHE n 1 176 PRO n 1 177 ARG n 1 178 ALA n 1 179 GLN n 1 180 ASP n 1 181 LYS n 1 182 VAL n 1 183 HIS n 1 184 TYR n 1 185 TYR n 1 186 ILE n 1 187 LYS n 1 188 LEU n 1 189 LYS n 1 190 ASP n 1 191 LEU n 1 192 ARG n 1 193 ASP n 1 194 GLN n 1 195 LEU n 1 196 LYS n 1 197 GLY n 1 198 ILE n 1 199 GLU n 1 200 ARG n 1 201 ASN n 1 202 MET n 1 203 ASP n 1 204 VAL n 2 1 DC n 2 2 DA n 2 3 DG n 2 4 DC n 2 5 DT n 2 6 DC n 2 7 DT n 2 8 DG n 2 9 DT n 2 10 DA n 2 11 DC n 2 12 DG n 2 13 DT n 2 14 DG n 2 15 DA n 2 16 DG n 2 17 DC n 2 18 DA n 2 19 DG n 2 20 DT n 2 21 DG n 2 22 DG n 2 23 DA n 2 24 DC n 2 25 DA n 2 26 DG n 2 27 DC n 2 28 DT n 3 1 DA n 3 2 DG n 3 3 DC n 3 4 DT n 3 5 DG n 3 6 DT n 3 7 DC n 3 8 DC n 3 9 DA n 3 10 DC n 3 11 DT n 3 12 DG n 3 13 DC n 3 14 DT n 3 15 DC n 3 16 DA n 3 17 ORP n 3 18 DG n 3 19 DT n 3 20 DA n 3 21 DC n 3 22 DA n 3 23 DG n 3 24 DA n 3 25 DG n 3 26 DC n 3 27 DT n 3 28 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene TDG _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pXC1057 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample ? ? ? ? ? 'DNA synthesis' 3 1 sample ? ? ? ? ? 'DNA synthesis' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP TDG_HUMAN Q13569 1 ;FNGVSEAELLTKTLPDILTFNLDIVIIGINPGLMAAYKGHHYPGPGNHFWKCLFMSGLSEVQLNHMDDHTLPGKYGIGFT NMVERTTPGSKDLSSKEFREGGRILVQKLQKYQPRIAVFNGKCIYEIFSKEVFGVKVKNLEFGLQPHKIPDTETLCYVMP SSSARCAQFPRAQDKVHYYIKLKDLRDQLKGIERNMDV ; 111 ? 2 PDB 4JGC 4JGC 2 CAGCTCTGTACGTGAGCAGTGGACAGCT ? ? 3 PDB 4JGC 4JGC 3 AGCTGTCCACTGCTCAXGTACAGAGCTG ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4JGC A 7 ? 204 ? Q13569 111 ? 308 ? 111 308 2 2 4JGC C 1 ? 28 ? 4JGC 1 ? 28 ? 1 28 3 3 4JGC D 1 ? 28 ? 4JGC 1 ? 28 ? 1 28 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4JGC GLY A 1 ? UNP Q13569 ? ? 'expression tag' 105 1 1 4JGC SER A 2 ? UNP Q13569 ? ? 'expression tag' 106 2 1 4JGC HIS A 3 ? UNP Q13569 ? ? 'expression tag' 107 3 1 4JGC MET A 4 ? UNP Q13569 ? ? 'expression tag' 108 4 1 4JGC ALA A 5 ? UNP Q13569 ? ? 'expression tag' 109 5 1 4JGC SER A 6 ? UNP Q13569 ? ? 'expression tag' 110 6 1 4JGC ALA A 36 ? UNP Q13569 ASN 140 'engineered mutation' 140 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1RT non-polymer . '4-amino-2-oxo-1,2-dihydropyrimidine-5-carboxylic acid' ? 'C5 H5 N3 O3' 155.111 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 ORP saccharide . 2-DEOXY-5-PHOSPHONO-RIBOSE ? 'C5 H11 O7 P' 214.110 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4JGC _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.49 _exptl_crystal.density_percent_sol 50.58 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_details '30% polyethylene glycol (PEG) 4000, 0.2 M ammonium acetate, 0.1 M sodium acetate, pH 4.6, VAPOR DIFFUSION, temperature 289K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2011-11-30 _diffrn_detector.details 'ROSENBAUM-ROCK MONOCHROMATO HIGH-RESOLUTION DOUBLE-CRYSTAL SI(220) SAGITTAL FOCUSING, ROSENBAUM-ROCK VERTICAL FOCUSING MIRROR' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 4JGC _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 45.56 _reflns.d_resolution_high 2.582 _reflns.number_obs 11604 _reflns.number_all ? _reflns.percent_possible_obs 92.9 _reflns.pdbx_Rmerge_I_obs 0.077 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 15.7 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.582 _reflns_shell.d_res_low 2.68 _reflns_shell.percent_possible_all 73.4 _reflns_shell.Rmerge_I_obs 0.365 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.0 _reflns_shell.pdbx_redundancy 2.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 922 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4JGC _refine.ls_number_reflns_obs 11567 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 45.56 _refine.ls_d_res_high 2.582 _refine.ls_percent_reflns_obs 91.79 _refine.ls_R_factor_obs 0.2324 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2298 _refine.ls_R_factor_R_free 0.2833 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.00 _refine.ls_number_reflns_R_free 578 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 31.1096 _refine.aniso_B[2][2] -10.6579 _refine.aniso_B[3][3] -20.4517 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -3.7997 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.324 _refine.solvent_model_param_bsol 38.336 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 4FNC' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.44 _refine.pdbx_overall_phase_error 33.62 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1524 _refine_hist.pdbx_number_atoms_nucleic_acid 1133 _refine_hist.pdbx_number_atoms_ligand 11 _refine_hist.number_atoms_solvent 22 _refine_hist.number_atoms_total 2690 _refine_hist.d_res_high 2.582 _refine_hist.d_res_low 45.56 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.019 ? ? 2853 ? 'X-RAY DIFFRACTION' f_angle_d 1.196 ? ? 4097 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 22.916 ? ? 1131 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.050 ? ? 451 ? 'X-RAY DIFFRACTION' f_plane_restr 0.007 ? ? 331 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.5824 2.8423 2232 0.3834 76.00 0.3985 . . 122 . . . . 'X-RAY DIFFRACTION' . 2.8423 3.2535 2753 0.2794 92.00 0.3647 . . 139 . . . . 'X-RAY DIFFRACTION' . 3.2535 4.0986 2974 0.2277 99.00 0.2911 . . 156 . . . . 'X-RAY DIFFRACTION' . 4.0986 45.5691 3030 0.1939 100.00 0.2354 . . 161 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 4JGC _struct.title 'Human TDG N140A mutant IN A COMPLEX WITH 5-carboxylcytosine (5caC)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4JGC _struct_keywords.pdbx_keywords HYDROLASE/DNA _struct_keywords.text ;5-carboxylcytosine; thymine DNA glycosylase; DNA modification; DNA 5mC oxidation; epigenetic regulation, DNA demethylation, 5-carboxylcytosine, HYDROLASE-DNA complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 11 ? LYS A 18 ? SER A 115 LYS A 122 1 ? 8 HELX_P HELX_P2 2 GLY A 38 ? GLY A 45 ? GLY A 142 GLY A 149 1 ? 8 HELX_P HELX_P3 3 HIS A 54 ? SER A 62 ? HIS A 158 SER A 166 1 ? 9 HELX_P HELX_P4 4 ASN A 70 ? HIS A 75 ? ASN A 174 HIS A 179 5 ? 6 HELX_P HELX_P5 5 THR A 76 ? TYR A 81 ? THR A 180 TYR A 185 1 ? 6 HELX_P HELX_P6 6 SER A 100 ? GLN A 119 ? SER A 204 GLN A 223 1 ? 20 HELX_P HELX_P7 7 LYS A 128 ? PHE A 139 ? LYS A 232 PHE A 243 1 ? 12 HELX_P HELX_P8 8 ARG A 177 ? ASN A 201 ? ARG A 281 ASN A 305 1 ? 25 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? C DA 16 "O3'" ? ? ? 1_555 C ORP 17 P ? ? D DA 16 D ORP 17 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale2 covale one ? C ORP 17 O3 ? ? ? 1_555 C DG 18 P ? ? D ORP 17 D DG 18 1_555 ? ? ? ? ? ? ? 1.606 ? ? hydrog1 hydrog ? ? B DC 1 N3 ? ? ? 1_555 C DG 28 N1 ? ? C DC 1 D DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DC 1 N4 ? ? ? 1_555 C DG 28 O6 ? ? C DC 1 D DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 1 O2 ? ? ? 1_555 C DG 28 N2 ? ? C DC 1 D DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DA 2 N1 ? ? ? 1_555 C DT 27 N3 ? ? C DA 2 D DT 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DA 2 N6 ? ? ? 1_555 C DT 27 O4 ? ? C DA 2 D DT 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DG 3 N1 ? ? ? 1_555 C DC 26 N3 ? ? C DG 3 D DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DG 3 N2 ? ? ? 1_555 C DC 26 O2 ? ? C DG 3 D DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DG 3 O6 ? ? ? 1_555 C DC 26 N4 ? ? C DG 3 D DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DC 4 N3 ? ? ? 1_555 C DG 25 N1 ? ? C DC 4 D DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DC 4 N4 ? ? ? 1_555 C DG 25 O6 ? ? C DC 4 D DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DC 4 O2 ? ? ? 1_555 C DG 25 N2 ? ? C DC 4 D DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DT 5 N3 ? ? ? 1_555 C DA 24 N1 ? ? C DT 5 D DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DT 5 O4 ? ? ? 1_555 C DA 24 N6 ? ? C DT 5 D DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DC 6 N3 ? ? ? 1_555 C DG 23 N1 ? ? C DC 6 D DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DC 6 N4 ? ? ? 1_555 C DG 23 O6 ? ? C DC 6 D DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DC 6 O2 ? ? ? 1_555 C DG 23 N2 ? ? C DC 6 D DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DT 7 N3 ? ? ? 1_555 C DA 22 N1 ? ? C DT 7 D DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DT 7 O4 ? ? ? 1_555 C DA 22 N6 ? ? C DT 7 D DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DG 8 N1 ? ? ? 1_555 C DC 21 N3 ? ? C DG 8 D DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DG 8 N2 ? ? ? 1_555 C DC 21 O2 ? ? C DG 8 D DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DG 8 O6 ? ? ? 1_555 C DC 21 N4 ? ? C DG 8 D DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DT 9 N3 ? ? ? 1_555 C DA 20 N1 ? ? C DT 9 D DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DT 9 O4 ? ? ? 1_555 C DA 20 N6 ? ? C DT 9 D DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DA 10 N1 ? ? ? 1_555 C DT 19 N3 ? ? C DA 10 D DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DA 10 N6 ? ? ? 1_555 C DT 19 O4 ? ? C DA 10 D DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DC 11 N3 ? ? ? 1_555 C DG 18 N1 ? ? C DC 11 D DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DC 11 N4 ? ? ? 1_555 C DG 18 O6 ? ? C DC 11 D DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DC 11 O2 ? ? ? 1_555 C DG 18 N2 ? ? C DC 11 D DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DT 13 N3 ? ? ? 1_555 C DA 16 N1 ? ? C DT 13 D DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DT 13 O4 ? ? ? 1_555 C DA 16 N6 ? ? C DT 13 D DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DG 14 N1 ? ? ? 1_555 C DC 15 N3 ? ? C DG 14 D DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B DG 14 N2 ? ? ? 1_555 C DC 15 O2 ? ? C DG 14 D DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B DG 14 O6 ? ? ? 1_555 C DC 15 N4 ? ? C DG 14 D DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B DA 15 N1 ? ? ? 1_555 C DT 14 N3 ? ? C DA 15 D DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B DA 15 N6 ? ? ? 1_555 C DT 14 O4 ? ? C DA 15 D DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B DG 16 N1 ? ? ? 1_555 C DC 13 N3 ? ? C DG 16 D DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B DG 16 N2 ? ? ? 1_555 C DC 13 O2 ? ? C DG 16 D DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B DG 16 O6 ? ? ? 1_555 C DC 13 N4 ? ? C DG 16 D DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B DC 17 N4 ? ? ? 1_555 C DT 11 O4 ? ? C DC 17 D DT 11 1_555 ? ? ? ? ? ? 'DC-DT MISPAIR' ? ? ? hydrog40 hydrog ? ? B DC 17 N3 ? ? ? 1_555 C DG 12 N1 ? ? C DC 17 D DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? B DC 17 N4 ? ? ? 1_555 C DG 12 O6 ? ? C DC 17 D DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? B DC 17 O2 ? ? ? 1_555 C DG 12 N2 ? ? C DC 17 D DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? B DA 18 N1 ? ? ? 1_555 C DT 11 N3 ? ? C DA 18 D DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? B DA 18 N6 ? ? ? 1_555 C DT 11 O4 ? ? C DA 18 D DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? B DG 19 N1 ? ? ? 1_555 C DC 10 N3 ? ? C DG 19 D DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? B DG 19 N2 ? ? ? 1_555 C DC 10 O2 ? ? C DG 19 D DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? B DG 19 O6 ? ? ? 1_555 C DC 10 N4 ? ? C DG 19 D DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? B DT 20 N3 ? ? ? 1_555 C DA 9 N1 ? ? C DT 20 D DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? B DT 20 O4 ? ? ? 1_555 C DA 9 N6 ? ? C DT 20 D DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? B DG 21 N1 ? ? ? 1_555 C DC 8 N3 ? ? C DG 21 D DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? B DG 21 N2 ? ? ? 1_555 C DC 8 O2 ? ? C DG 21 D DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? B DG 21 O6 ? ? ? 1_555 C DC 8 N4 ? ? C DG 21 D DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? B DG 22 N1 ? ? ? 1_555 C DC 7 N3 ? ? C DG 22 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? B DG 22 N2 ? ? ? 1_555 C DC 7 O2 ? ? C DG 22 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? B DG 22 O6 ? ? ? 1_555 C DC 7 N4 ? ? C DG 22 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? B DA 23 N1 ? ? ? 1_555 C DT 6 N3 ? ? C DA 23 D DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? B DA 23 N6 ? ? ? 1_555 C DT 6 O4 ? ? C DA 23 D DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? B DC 24 N3 ? ? ? 1_555 C DG 5 N1 ? ? C DC 24 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? B DC 24 N4 ? ? ? 1_555 C DG 5 O6 ? ? C DC 24 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? B DC 24 O2 ? ? ? 1_555 C DG 5 N2 ? ? C DC 24 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? B DA 25 N1 ? ? ? 1_555 C DT 4 N3 ? ? C DA 25 D DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? B DA 25 N6 ? ? ? 1_555 C DT 4 O4 ? ? C DA 25 D DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? B DG 26 N1 ? ? ? 1_555 C DC 3 N3 ? ? C DG 26 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? B DG 26 N2 ? ? ? 1_555 C DC 3 O2 ? ? C DG 26 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? B DG 26 O6 ? ? ? 1_555 C DC 3 N4 ? ? C DG 26 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? B DC 27 N3 ? ? ? 1_555 C DG 2 N1 ? ? C DC 27 D DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? B DC 27 N4 ? ? ? 1_555 C DG 2 O6 ? ? C DC 27 D DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? B DC 27 O2 ? ? ? 1_555 C DG 2 N2 ? ? C DC 27 D DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? B DT 28 N3 ? ? ? 1_555 C DA 1 N1 ? ? C DT 28 D DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? B DT 28 O4 ? ? ? 1_555 C DA 1 N6 ? ? C DT 28 D DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 83 ? ASN A 87 ? ILE A 187 ASN A 191 A 2 ILE A 30 ? GLY A 34 ? ILE A 134 GLY A 138 A 3 ILE A 122 ? ASN A 126 ? ILE A 226 ASN A 230 A 4 LEU A 161 ? MET A 165 ? LEU A 265 MET A 269 A 5 GLY A 149 ? LEU A 150 ? GLY A 253 LEU A 254 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLY A 84 ? O GLY A 188 N ILE A 30 ? N ILE A 134 A 2 3 N ILE A 33 ? N ILE A 137 O VAL A 124 ? O VAL A 228 A 3 4 N ALA A 123 ? N ALA A 227 O LEU A 161 ? O LEU A 265 A 4 5 O VAL A 164 ? O VAL A 268 N GLY A 149 ? N GLY A 253 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id D _struct_site.pdbx_auth_comp_id 1RT _struct_site.pdbx_auth_seq_id 417 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 10 _struct_site.details 'BINDING SITE FOR RESIDUE 1RT D 417' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 GLY A 34 ? GLY A 138 . ? 1_555 ? 2 AC1 10 ILE A 35 ? ILE A 139 . ? 1_555 ? 3 AC1 10 ALA A 36 ? ALA A 140 . ? 1_555 ? 4 AC1 10 PRO A 37 ? PRO A 141 . ? 1_555 ? 5 AC1 10 GLY A 38 ? GLY A 142 . ? 1_555 ? 6 AC1 10 TYR A 48 ? TYR A 152 . ? 1_555 ? 7 AC1 10 ASN A 87 ? ASN A 191 . ? 1_555 ? 8 AC1 10 ASN A 126 ? ASN A 230 . ? 1_555 ? 9 AC1 10 SER A 167 ? SER A 271 . ? 1_555 ? 10 AC1 10 ORP C 17 ? ORP D 17 . ? 1_555 ? # _database_PDB_matrix.entry_id 4JGC _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4JGC _atom_sites.fract_transf_matrix[1][1] 0.010931 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000976 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018672 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012258 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 105 ? ? ? A . n A 1 2 SER 2 106 ? ? ? A . n A 1 3 HIS 3 107 ? ? ? A . n A 1 4 MET 4 108 ? ? ? A . n A 1 5 ALA 5 109 ? ? ? A . n A 1 6 SER 6 110 110 SER SER A . n A 1 7 PHE 7 111 111 PHE PHE A . n A 1 8 ASN 8 112 112 ASN ASN A . n A 1 9 GLY 9 113 113 GLY GLY A . n A 1 10 VAL 10 114 114 VAL VAL A . n A 1 11 SER 11 115 115 SER SER A . n A 1 12 GLU 12 116 116 GLU ALA A . n A 1 13 ALA 13 117 117 ALA ALA A . n A 1 14 GLU 14 118 118 GLU ALA A . n A 1 15 LEU 15 119 119 LEU LEU A . n A 1 16 LEU 16 120 120 LEU LEU A . n A 1 17 THR 17 121 121 THR THR A . n A 1 18 LYS 18 122 122 LYS LYS A . n A 1 19 THR 19 123 123 THR THR A . n A 1 20 LEU 20 124 124 LEU LEU A . n A 1 21 PRO 21 125 125 PRO PRO A . n A 1 22 ASP 22 126 126 ASP ASP A . n A 1 23 ILE 23 127 127 ILE ILE A . n A 1 24 LEU 24 128 128 LEU LEU A . n A 1 25 THR 25 129 129 THR THR A . n A 1 26 PHE 26 130 130 PHE PHE A . n A 1 27 ASN 27 131 131 ASN ASN A . n A 1 28 LEU 28 132 132 LEU LEU A . n A 1 29 ASP 29 133 133 ASP ASP A . n A 1 30 ILE 30 134 134 ILE ILE A . n A 1 31 VAL 31 135 135 VAL VAL A . n A 1 32 ILE 32 136 136 ILE ILE A . n A 1 33 ILE 33 137 137 ILE ILE A . n A 1 34 GLY 34 138 138 GLY GLY A . n A 1 35 ILE 35 139 139 ILE ILE A . n A 1 36 ALA 36 140 140 ALA ALA A . n A 1 37 PRO 37 141 141 PRO PRO A . n A 1 38 GLY 38 142 142 GLY GLY A . n A 1 39 LEU 39 143 143 LEU LEU A . n A 1 40 MET 40 144 144 MET MET A . n A 1 41 ALA 41 145 145 ALA ALA A . n A 1 42 ALA 42 146 146 ALA ALA A . n A 1 43 TYR 43 147 147 TYR TYR A . n A 1 44 LYS 44 148 148 LYS LYS A . n A 1 45 GLY 45 149 149 GLY GLY A . n A 1 46 HIS 46 150 150 HIS HIS A . n A 1 47 HIS 47 151 151 HIS HIS A . n A 1 48 TYR 48 152 152 TYR TYR A . n A 1 49 PRO 49 153 153 PRO PRO A . n A 1 50 GLY 50 154 154 GLY GLY A . n A 1 51 PRO 51 155 155 PRO PRO A . n A 1 52 GLY 52 156 156 GLY GLY A . n A 1 53 ASN 53 157 157 ASN ASN A . n A 1 54 HIS 54 158 158 HIS HIS A . n A 1 55 PHE 55 159 159 PHE PHE A . n A 1 56 TRP 56 160 160 TRP TRP A . n A 1 57 LYS 57 161 161 LYS LYS A . n A 1 58 CYS 58 162 162 CYS CYS A . n A 1 59 LEU 59 163 163 LEU LEU A . n A 1 60 PHE 60 164 164 PHE PHE A . n A 1 61 MET 61 165 165 MET MET A . n A 1 62 SER 62 166 166 SER SER A . n A 1 63 GLY 63 167 167 GLY GLY A . n A 1 64 LEU 64 168 168 LEU LEU A . n A 1 65 SER 65 169 169 SER SER A . n A 1 66 GLU 66 170 170 GLU GLU A . n A 1 67 VAL 67 171 171 VAL VAL A . n A 1 68 GLN 68 172 172 GLN GLN A . n A 1 69 LEU 69 173 173 LEU LEU A . n A 1 70 ASN 70 174 174 ASN ASN A . n A 1 71 HIS 71 175 175 HIS HIS A . n A 1 72 MET 72 176 176 MET MET A . n A 1 73 ASP 73 177 177 ASP ASP A . n A 1 74 ASP 74 178 178 ASP ASP A . n A 1 75 HIS 75 179 179 HIS HIS A . n A 1 76 THR 76 180 180 THR THR A . n A 1 77 LEU 77 181 181 LEU LEU A . n A 1 78 PRO 78 182 182 PRO PRO A . n A 1 79 GLY 79 183 183 GLY GLY A . n A 1 80 LYS 80 184 184 LYS LYS A . n A 1 81 TYR 81 185 185 TYR TYR A . n A 1 82 GLY 82 186 186 GLY GLY A . n A 1 83 ILE 83 187 187 ILE ILE A . n A 1 84 GLY 84 188 188 GLY GLY A . n A 1 85 PHE 85 189 189 PHE PHE A . n A 1 86 THR 86 190 190 THR THR A . n A 1 87 ASN 87 191 191 ASN ASN A . n A 1 88 MET 88 192 192 MET MET A . n A 1 89 VAL 89 193 193 VAL VAL A . n A 1 90 GLU 90 194 194 GLU GLU A . n A 1 91 ARG 91 195 195 ARG ARG A . n A 1 92 THR 92 196 196 THR THR A . n A 1 93 THR 93 197 197 THR THR A . n A 1 94 PRO 94 198 198 PRO PRO A . n A 1 95 GLY 95 199 199 GLY GLY A . n A 1 96 SER 96 200 200 SER SER A . n A 1 97 LYS 97 201 201 LYS LYS A . n A 1 98 ASP 98 202 202 ASP ASP A . n A 1 99 LEU 99 203 203 LEU LEU A . n A 1 100 SER 100 204 204 SER SER A . n A 1 101 SER 101 205 205 SER SER A . n A 1 102 LYS 102 206 206 LYS LYS A . n A 1 103 GLU 103 207 207 GLU GLU A . n A 1 104 PHE 104 208 208 PHE PHE A . n A 1 105 ARG 105 209 209 ARG ARG A . n A 1 106 GLU 106 210 210 GLU GLU A . n A 1 107 GLY 107 211 211 GLY GLY A . n A 1 108 GLY 108 212 212 GLY GLY A . n A 1 109 ARG 109 213 213 ARG ARG A . n A 1 110 ILE 110 214 214 ILE ILE A . n A 1 111 LEU 111 215 215 LEU LEU A . n A 1 112 VAL 112 216 216 VAL VAL A . n A 1 113 GLN 113 217 217 GLN GLN A . n A 1 114 LYS 114 218 218 LYS LYS A . n A 1 115 LEU 115 219 219 LEU LEU A . n A 1 116 GLN 116 220 220 GLN GLN A . n A 1 117 LYS 117 221 221 LYS LYS A . n A 1 118 TYR 118 222 222 TYR TYR A . n A 1 119 GLN 119 223 223 GLN GLN A . n A 1 120 PRO 120 224 224 PRO PRO A . n A 1 121 ARG 121 225 225 ARG ARG A . n A 1 122 ILE 122 226 226 ILE ILE A . n A 1 123 ALA 123 227 227 ALA ALA A . n A 1 124 VAL 124 228 228 VAL VAL A . n A 1 125 PHE 125 229 229 PHE PHE A . n A 1 126 ASN 126 230 230 ASN ASN A . n A 1 127 GLY 127 231 231 GLY GLY A . n A 1 128 LYS 128 232 232 LYS LYS A . n A 1 129 CYS 129 233 233 CYS CYS A . n A 1 130 ILE 130 234 234 ILE ILE A . n A 1 131 TYR 131 235 235 TYR TYR A . n A 1 132 GLU 132 236 236 GLU GLU A . n A 1 133 ILE 133 237 237 ILE ILE A . n A 1 134 PHE 134 238 238 PHE PHE A . n A 1 135 SER 135 239 239 SER SER A . n A 1 136 LYS 136 240 240 LYS LYS A . n A 1 137 GLU 137 241 241 GLU GLU A . n A 1 138 VAL 138 242 242 VAL VAL A . n A 1 139 PHE 139 243 243 PHE PHE A . n A 1 140 GLY 140 244 244 GLY GLY A . n A 1 141 VAL 141 245 245 VAL VAL A . n A 1 142 LYS 142 246 246 LYS LYS A . n A 1 143 VAL 143 247 247 VAL VAL A . n A 1 144 LYS 144 248 248 LYS LYS A . n A 1 145 ASN 145 249 249 ASN ASN A . n A 1 146 LEU 146 250 250 LEU LEU A . n A 1 147 GLU 147 251 251 GLU GLU A . n A 1 148 PHE 148 252 252 PHE PHE A . n A 1 149 GLY 149 253 253 GLY GLY A . n A 1 150 LEU 150 254 254 LEU LEU A . n A 1 151 GLN 151 255 255 GLN GLN A . n A 1 152 PRO 152 256 256 PRO PRO A . n A 1 153 HIS 153 257 257 HIS HIS A . n A 1 154 LYS 154 258 258 LYS LYS A . n A 1 155 ILE 155 259 259 ILE ILE A . n A 1 156 PRO 156 260 260 PRO PRO A . n A 1 157 ASP 157 261 261 ASP ASP A . n A 1 158 THR 158 262 262 THR THR A . n A 1 159 GLU 159 263 263 GLU GLU A . n A 1 160 THR 160 264 264 THR THR A . n A 1 161 LEU 161 265 265 LEU LEU A . n A 1 162 CYS 162 266 266 CYS CYS A . n A 1 163 TYR 163 267 267 TYR TYR A . n A 1 164 VAL 164 268 268 VAL VAL A . n A 1 165 MET 165 269 269 MET MET A . n A 1 166 PRO 166 270 270 PRO PRO A . n A 1 167 SER 167 271 271 SER SER A . n A 1 168 SER 168 272 272 SER SER A . n A 1 169 SER 169 273 273 SER SER A . n A 1 170 ALA 170 274 274 ALA ALA A . n A 1 171 ARG 171 275 275 ARG ARG A . n A 1 172 CYS 172 276 276 CYS CYS A . n A 1 173 ALA 173 277 277 ALA ALA A . n A 1 174 GLN 174 278 278 GLN GLN A . n A 1 175 PHE 175 279 279 PHE PHE A . n A 1 176 PRO 176 280 280 PRO PRO A . n A 1 177 ARG 177 281 281 ARG ARG A . n A 1 178 ALA 178 282 282 ALA ALA A . n A 1 179 GLN 179 283 283 GLN GLN A . n A 1 180 ASP 180 284 284 ASP ASP A . n A 1 181 LYS 181 285 285 LYS LYS A . n A 1 182 VAL 182 286 286 VAL VAL A . n A 1 183 HIS 183 287 287 HIS HIS A . n A 1 184 TYR 184 288 288 TYR TYR A . n A 1 185 TYR 185 289 289 TYR TYR A . n A 1 186 ILE 186 290 290 ILE ILE A . n A 1 187 LYS 187 291 291 LYS LYS A . n A 1 188 LEU 188 292 292 LEU LEU A . n A 1 189 LYS 189 293 293 LYS LYS A . n A 1 190 ASP 190 294 294 ASP ASP A . n A 1 191 LEU 191 295 295 LEU LEU A . n A 1 192 ARG 192 296 296 ARG ARG A . n A 1 193 ASP 193 297 297 ASP ASP A . n A 1 194 GLN 194 298 298 GLN GLN A . n A 1 195 LEU 195 299 299 LEU LEU A . n A 1 196 LYS 196 300 300 LYS LYS A . n A 1 197 GLY 197 301 301 GLY GLY A . n A 1 198 ILE 198 302 302 ILE ALA A . n A 1 199 GLU 199 303 303 GLU GLU A . n A 1 200 ARG 200 304 304 ARG ARG A . n A 1 201 ASN 201 305 305 ASN ALA A . n A 1 202 MET 202 306 ? ? ? A . n A 1 203 ASP 203 307 ? ? ? A . n A 1 204 VAL 204 308 ? ? ? A . n B 2 1 DC 1 1 1 DC DC C . n B 2 2 DA 2 2 2 DA DA C . n B 2 3 DG 3 3 3 DG DG C . n B 2 4 DC 4 4 4 DC DC C . n B 2 5 DT 5 5 5 DT DT C . n B 2 6 DC 6 6 6 DC DC C . n B 2 7 DT 7 7 7 DT DT C . n B 2 8 DG 8 8 8 DG DG C . n B 2 9 DT 9 9 9 DT DT C . n B 2 10 DA 10 10 10 DA DA C . n B 2 11 DC 11 11 11 DC DC C . n B 2 12 DG 12 12 12 DG DG C . n B 2 13 DT 13 13 13 DT DT C . n B 2 14 DG 14 14 14 DG DG C . n B 2 15 DA 15 15 15 DA DA C . n B 2 16 DG 16 16 16 DG DG C . n B 2 17 DC 17 17 17 DC DC C . n B 2 18 DA 18 18 18 DA DA C . n B 2 19 DG 19 19 19 DG DG C . n B 2 20 DT 20 20 20 DT DT C . n B 2 21 DG 21 21 21 DG DG C . n B 2 22 DG 22 22 22 DG DG C . n B 2 23 DA 23 23 23 DA DA C . n B 2 24 DC 24 24 24 DC DC C . n B 2 25 DA 25 25 25 DA DA C . n B 2 26 DG 26 26 26 DG DG C . n B 2 27 DC 27 27 27 DC DC C . n B 2 28 DT 28 28 28 DT DT C . n C 3 1 DA 1 1 1 DA DA D . n C 3 2 DG 2 2 2 DG DG D . n C 3 3 DC 3 3 3 DC DC D . n C 3 4 DT 4 4 4 DT DT D . n C 3 5 DG 5 5 5 DG DG D . n C 3 6 DT 6 6 6 DT DT D . n C 3 7 DC 7 7 7 DC DC D . n C 3 8 DC 8 8 8 DC DC D . n C 3 9 DA 9 9 9 DA DA D . n C 3 10 DC 10 10 10 DC DC D . n C 3 11 DT 11 11 11 DT DT D . n C 3 12 DG 12 12 12 DG DG D . n C 3 13 DC 13 13 13 DC DC D . n C 3 14 DT 14 14 14 DT DT D . n C 3 15 DC 15 15 15 DC DC D . n C 3 16 DA 16 16 16 DA DA D . n C 3 17 ORP 17 17 17 ORP 1CC D . n C 3 18 DG 18 18 18 DG DG D . n C 3 19 DT 19 19 19 DT DT D . n C 3 20 DA 20 20 20 DA DA D . n C 3 21 DC 21 21 21 DC DC D . n C 3 22 DA 22 22 22 DA DA D . n C 3 23 DG 23 23 23 DG DG D . n C 3 24 DA 24 24 24 DA DA D . n C 3 25 DG 25 25 25 DG DG D . n C 3 26 DC 26 26 26 DC DC D . n C 3 27 DT 27 27 27 DT DT D . n C 3 28 DG 28 28 28 DG DG D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 1RT 1 417 17 1RT 1CC D . E 5 HOH 1 501 3 HOH HOH A . E 5 HOH 2 502 5 HOH HOH A . E 5 HOH 3 503 6 HOH HOH A . E 5 HOH 4 504 8 HOH HOH A . E 5 HOH 5 505 11 HOH HOH A . E 5 HOH 6 506 12 HOH HOH A . E 5 HOH 7 507 13 HOH HOH A . E 5 HOH 8 508 14 HOH HOH A . E 5 HOH 9 509 15 HOH HOH A . E 5 HOH 10 510 16 HOH HOH A . E 5 HOH 11 511 19 HOH HOH A . E 5 HOH 12 512 20 HOH HOH A . E 5 HOH 13 513 21 HOH HOH A . E 5 HOH 14 514 22 HOH HOH A . E 5 HOH 15 515 23 HOH HOH A . F 5 HOH 1 101 4 HOH HOH C . G 5 HOH 1 101 1 HOH HOH D . G 5 HOH 2 102 7 HOH HOH D . G 5 HOH 3 103 9 HOH HOH D . G 5 HOH 4 104 10 HOH HOH D . G 5 HOH 5 105 17 HOH HOH D . G 5 HOH 6 106 18 HOH HOH D . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5000 ? 1 MORE -24 ? 1 'SSA (A^2)' 17800 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-05-29 2 'Structure model' 1 1 2013-07-03 3 'Structure model' 1 2 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_conn 6 3 'Structure model' struct_ref_seq_dif 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 3 'Structure model' '_struct_ref_seq_dif.details' 5 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHENIX 'model building' . ? 2 PHENIX refinement '(phenix.refine: 1.7.3_928)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 PHENIX phasing . ? 6 # _pdbx_entry_details.entry_id 4JGC _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ;5-CARBOXY-2'-DEOXYCYTIDINE MONOPHOSPHATE in the DNA GOT CLEAVED INTO 5-CARBOXYLCYTOSINE BASE AND 2-DEOXY-5-PHOSPHONO-RIBOSE ; _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C A GLY 156 ? ? O A GLY 156 ? ? 1.054 1.232 -0.178 0.016 N 2 1 N A ASN 157 ? ? CA A ASN 157 ? ? 1.266 1.459 -0.193 0.020 N 3 1 CG A ASN 157 ? ? OD1 A ASN 157 ? ? 1.077 1.235 -0.158 0.022 N 4 1 CG A ASN 157 ? ? ND2 A ASN 157 ? ? 1.169 1.324 -0.155 0.025 N 5 1 CB A ARG 275 ? ? CG A ARG 275 ? B 1.091 1.521 -0.430 0.027 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CD A ARG 275 ? B NE A ARG 275 ? B CZ A ARG 275 ? B 134.43 123.60 10.83 1.40 N 2 1 NE A ARG 275 ? B CZ A ARG 275 ? B NH1 A ARG 275 ? B 129.52 120.30 9.22 0.50 N 3 1 NE A ARG 275 ? B CZ A ARG 275 ? B NH2 A ARG 275 ? B 115.90 120.30 -4.40 0.50 N 4 1 "O4'" C DG 3 ? ? "C1'" C DG 3 ? ? N9 C DG 3 ? ? 111.17 108.30 2.87 0.30 N 5 1 "O4'" D DC 21 ? ? "C1'" D DC 21 ? ? N1 D DC 21 ? ? 110.31 108.30 2.01 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 140 ? ? -176.26 137.54 2 1 GLU A 170 ? ? 65.59 -8.37 3 1 GLN A 223 ? ? 52.18 72.02 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 PRO _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 153 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 GLY _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 154 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -137.18 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 116 ? CG ? A GLU 12 CG 2 1 Y 1 A GLU 116 ? CD ? A GLU 12 CD 3 1 Y 1 A GLU 116 ? OE1 ? A GLU 12 OE1 4 1 Y 1 A GLU 116 ? OE2 ? A GLU 12 OE2 5 1 Y 1 A GLU 118 ? CG ? A GLU 14 CG 6 1 Y 1 A GLU 118 ? CD ? A GLU 14 CD 7 1 Y 1 A GLU 118 ? OE1 ? A GLU 14 OE1 8 1 Y 1 A GLU 118 ? OE2 ? A GLU 14 OE2 9 1 Y 1 A LYS 161 ? CG ? A LYS 57 CG 10 1 Y 1 A LYS 161 ? CD ? A LYS 57 CD 11 1 Y 1 A LYS 161 ? CE ? A LYS 57 CE 12 1 Y 1 A LYS 161 ? NZ ? A LYS 57 NZ 13 1 Y 1 A LYS 201 ? CG ? A LYS 97 CG 14 1 Y 1 A LYS 201 ? CD ? A LYS 97 CD 15 1 Y 1 A LYS 201 ? CE ? A LYS 97 CE 16 1 Y 1 A LYS 201 ? NZ ? A LYS 97 NZ 17 1 Y 1 A LYS 206 ? CG ? A LYS 102 CG 18 1 Y 1 A LYS 206 ? CD ? A LYS 102 CD 19 1 Y 1 A LYS 206 ? CE ? A LYS 102 CE 20 1 Y 1 A LYS 206 ? NZ ? A LYS 102 NZ 21 1 Y 1 A ILE 302 ? CG1 ? A ILE 198 CG1 22 1 Y 1 A ILE 302 ? CG2 ? A ILE 198 CG2 23 1 Y 1 A ILE 302 ? CD1 ? A ILE 198 CD1 24 1 Y 1 A GLU 303 ? CG ? A GLU 199 CG 25 1 Y 1 A GLU 303 ? CD ? A GLU 199 CD 26 1 Y 1 A GLU 303 ? OE1 ? A GLU 199 OE1 27 1 Y 1 A GLU 303 ? OE2 ? A GLU 199 OE2 28 1 Y 1 A ARG 304 ? CG ? A ARG 200 CG 29 1 Y 1 A ARG 304 ? CD ? A ARG 200 CD 30 1 Y 1 A ARG 304 ? NE ? A ARG 200 NE 31 1 Y 1 A ARG 304 ? CZ ? A ARG 200 CZ 32 1 Y 1 A ARG 304 ? NH1 ? A ARG 200 NH1 33 1 Y 1 A ARG 304 ? NH2 ? A ARG 200 NH2 34 1 Y 1 A ASN 305 ? CG ? A ASN 201 CG 35 1 Y 1 A ASN 305 ? OD1 ? A ASN 201 OD1 36 1 Y 1 A ASN 305 ? ND2 ? A ASN 201 ND2 37 1 Y 1 C DC 1 ? "O5'" ? B DC 1 "O5'" 38 1 Y 1 D DA 1 ? "O5'" ? C DA 1 "O5'" # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 105 ? A GLY 1 2 1 Y 1 A SER 106 ? A SER 2 3 1 Y 1 A HIS 107 ? A HIS 3 4 1 Y 1 A MET 108 ? A MET 4 5 1 Y 1 A ALA 109 ? A ALA 5 6 1 Y 1 A MET 306 ? A MET 202 7 1 Y 1 A ASP 307 ? A ASP 203 8 1 Y 1 A VAL 308 ? A VAL 204 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 1RT N1 N N N 1 1RT C2 C N N 2 1RT O2 O N N 3 1RT N3 N N N 4 1RT C4 C N N 5 1RT N4 N N N 6 1RT C5 C N N 7 1RT C6 C N N 8 1RT C21 C N N 9 1RT O22 O N N 10 1RT O23 O N N 11 1RT H1 H N N 12 1RT H2 H N N 13 1RT H4 H N N 14 1RT H5 H N N 15 1RT H6 H N N 16 ALA N N N N 17 ALA CA C N S 18 ALA C C N N 19 ALA O O N N 20 ALA CB C N N 21 ALA OXT O N N 22 ALA H H N N 23 ALA H2 H N N 24 ALA HA H N N 25 ALA HB1 H N N 26 ALA HB2 H N N 27 ALA HB3 H N N 28 ALA HXT H N N 29 ARG N N N N 30 ARG CA C N S 31 ARG C C N N 32 ARG O O N N 33 ARG CB C N N 34 ARG CG C N N 35 ARG CD C N N 36 ARG NE N N N 37 ARG CZ C N N 38 ARG NH1 N N N 39 ARG NH2 N N N 40 ARG OXT O N N 41 ARG H H N N 42 ARG H2 H N N 43 ARG HA H N N 44 ARG HB2 H N N 45 ARG HB3 H N N 46 ARG HG2 H N N 47 ARG HG3 H N N 48 ARG HD2 H N N 49 ARG HD3 H N N 50 ARG HE H N N 51 ARG HH11 H N N 52 ARG HH12 H N N 53 ARG HH21 H N N 54 ARG HH22 H N N 55 ARG HXT H N N 56 ASN N N N N 57 ASN CA C N S 58 ASN C C N N 59 ASN O O N N 60 ASN CB C N N 61 ASN CG C N N 62 ASN OD1 O N N 63 ASN ND2 N N N 64 ASN OXT O N N 65 ASN H H N N 66 ASN H2 H N N 67 ASN HA H N N 68 ASN HB2 H N N 69 ASN HB3 H N N 70 ASN HD21 H N N 71 ASN HD22 H N N 72 ASN HXT H N N 73 ASP N N N N 74 ASP CA C N S 75 ASP C C N N 76 ASP O O N N 77 ASP CB C N N 78 ASP CG C N N 79 ASP OD1 O N N 80 ASP OD2 O N N 81 ASP OXT O N N 82 ASP H H N N 83 ASP H2 H N N 84 ASP HA H N N 85 ASP HB2 H N N 86 ASP HB3 H N N 87 ASP HD2 H N N 88 ASP HXT H N N 89 CYS N N N N 90 CYS CA C N R 91 CYS C C N N 92 CYS O O N N 93 CYS CB C N N 94 CYS SG S N N 95 CYS OXT O N N 96 CYS H H N N 97 CYS H2 H N N 98 CYS HA H N N 99 CYS HB2 H N N 100 CYS HB3 H N N 101 CYS HG H N N 102 CYS HXT H N N 103 DA OP3 O N N 104 DA P P N N 105 DA OP1 O N N 106 DA OP2 O N N 107 DA "O5'" O N N 108 DA "C5'" C N N 109 DA "C4'" C N R 110 DA "O4'" O N N 111 DA "C3'" C N S 112 DA "O3'" O N N 113 DA "C2'" C N N 114 DA "C1'" C N R 115 DA N9 N Y N 116 DA C8 C Y N 117 DA N7 N Y N 118 DA C5 C Y N 119 DA C6 C Y N 120 DA N6 N N N 121 DA N1 N Y N 122 DA C2 C Y N 123 DA N3 N Y N 124 DA C4 C Y N 125 DA HOP3 H N N 126 DA HOP2 H N N 127 DA "H5'" H N N 128 DA "H5''" H N N 129 DA "H4'" H N N 130 DA "H3'" H N N 131 DA "HO3'" H N N 132 DA "H2'" H N N 133 DA "H2''" H N N 134 DA "H1'" H N N 135 DA H8 H N N 136 DA H61 H N N 137 DA H62 H N N 138 DA H2 H N N 139 DC OP3 O N N 140 DC P P N N 141 DC OP1 O N N 142 DC OP2 O N N 143 DC "O5'" O N N 144 DC "C5'" C N N 145 DC "C4'" C N R 146 DC "O4'" O N N 147 DC "C3'" C N S 148 DC "O3'" O N N 149 DC "C2'" C N N 150 DC "C1'" C N R 151 DC N1 N N N 152 DC C2 C N N 153 DC O2 O N N 154 DC N3 N N N 155 DC C4 C N N 156 DC N4 N N N 157 DC C5 C N N 158 DC C6 C N N 159 DC HOP3 H N N 160 DC HOP2 H N N 161 DC "H5'" H N N 162 DC "H5''" H N N 163 DC "H4'" H N N 164 DC "H3'" H N N 165 DC "HO3'" H N N 166 DC "H2'" H N N 167 DC "H2''" H N N 168 DC "H1'" H N N 169 DC H41 H N N 170 DC H42 H N N 171 DC H5 H N N 172 DC H6 H N N 173 DG OP3 O N N 174 DG P P N N 175 DG OP1 O N N 176 DG OP2 O N N 177 DG "O5'" O N N 178 DG "C5'" C N N 179 DG "C4'" C N R 180 DG "O4'" O N N 181 DG "C3'" C N S 182 DG "O3'" O N N 183 DG "C2'" C N N 184 DG "C1'" C N R 185 DG N9 N Y N 186 DG C8 C Y N 187 DG N7 N Y N 188 DG C5 C Y N 189 DG C6 C N N 190 DG O6 O N N 191 DG N1 N N N 192 DG C2 C N N 193 DG N2 N N N 194 DG N3 N N N 195 DG C4 C Y N 196 DG HOP3 H N N 197 DG HOP2 H N N 198 DG "H5'" H N N 199 DG "H5''" H N N 200 DG "H4'" H N N 201 DG "H3'" H N N 202 DG "HO3'" H N N 203 DG "H2'" H N N 204 DG "H2''" H N N 205 DG "H1'" H N N 206 DG H8 H N N 207 DG H1 H N N 208 DG H21 H N N 209 DG H22 H N N 210 DT OP3 O N N 211 DT P P N N 212 DT OP1 O N N 213 DT OP2 O N N 214 DT "O5'" O N N 215 DT "C5'" C N N 216 DT "C4'" C N R 217 DT "O4'" O N N 218 DT "C3'" C N S 219 DT "O3'" O N N 220 DT "C2'" C N N 221 DT "C1'" C N R 222 DT N1 N N N 223 DT C2 C N N 224 DT O2 O N N 225 DT N3 N N N 226 DT C4 C N N 227 DT O4 O N N 228 DT C5 C N N 229 DT C7 C N N 230 DT C6 C N N 231 DT HOP3 H N N 232 DT HOP2 H N N 233 DT "H5'" H N N 234 DT "H5''" H N N 235 DT "H4'" H N N 236 DT "H3'" H N N 237 DT "HO3'" H N N 238 DT "H2'" H N N 239 DT "H2''" H N N 240 DT "H1'" H N N 241 DT H3 H N N 242 DT H71 H N N 243 DT H72 H N N 244 DT H73 H N N 245 DT H6 H N N 246 GLN N N N N 247 GLN CA C N S 248 GLN C C N N 249 GLN O O N N 250 GLN CB C N N 251 GLN CG C N N 252 GLN CD C N N 253 GLN OE1 O N N 254 GLN NE2 N N N 255 GLN OXT O N N 256 GLN H H N N 257 GLN H2 H N N 258 GLN HA H N N 259 GLN HB2 H N N 260 GLN HB3 H N N 261 GLN HG2 H N N 262 GLN HG3 H N N 263 GLN HE21 H N N 264 GLN HE22 H N N 265 GLN HXT H N N 266 GLU N N N N 267 GLU CA C N S 268 GLU C C N N 269 GLU O O N N 270 GLU CB C N N 271 GLU CG C N N 272 GLU CD C N N 273 GLU OE1 O N N 274 GLU OE2 O N N 275 GLU OXT O N N 276 GLU H H N N 277 GLU H2 H N N 278 GLU HA H N N 279 GLU HB2 H N N 280 GLU HB3 H N N 281 GLU HG2 H N N 282 GLU HG3 H N N 283 GLU HE2 H N N 284 GLU HXT H N N 285 GLY N N N N 286 GLY CA C N N 287 GLY C C N N 288 GLY O O N N 289 GLY OXT O N N 290 GLY H H N N 291 GLY H2 H N N 292 GLY HA2 H N N 293 GLY HA3 H N N 294 GLY HXT H N N 295 HIS N N N N 296 HIS CA C N S 297 HIS C C N N 298 HIS O O N N 299 HIS CB C N N 300 HIS CG C Y N 301 HIS ND1 N Y N 302 HIS CD2 C Y N 303 HIS CE1 C Y N 304 HIS NE2 N Y N 305 HIS OXT O N N 306 HIS H H N N 307 HIS H2 H N N 308 HIS HA H N N 309 HIS HB2 H N N 310 HIS HB3 H N N 311 HIS HD1 H N N 312 HIS HD2 H N N 313 HIS HE1 H N N 314 HIS HE2 H N N 315 HIS HXT H N N 316 HOH O O N N 317 HOH H1 H N N 318 HOH H2 H N N 319 ILE N N N N 320 ILE CA C N S 321 ILE C C N N 322 ILE O O N N 323 ILE CB C N S 324 ILE CG1 C N N 325 ILE CG2 C N N 326 ILE CD1 C N N 327 ILE OXT O N N 328 ILE H H N N 329 ILE H2 H N N 330 ILE HA H N N 331 ILE HB H N N 332 ILE HG12 H N N 333 ILE HG13 H N N 334 ILE HG21 H N N 335 ILE HG22 H N N 336 ILE HG23 H N N 337 ILE HD11 H N N 338 ILE HD12 H N N 339 ILE HD13 H N N 340 ILE HXT H N N 341 LEU N N N N 342 LEU CA C N S 343 LEU C C N N 344 LEU O O N N 345 LEU CB C N N 346 LEU CG C N N 347 LEU CD1 C N N 348 LEU CD2 C N N 349 LEU OXT O N N 350 LEU H H N N 351 LEU H2 H N N 352 LEU HA H N N 353 LEU HB2 H N N 354 LEU HB3 H N N 355 LEU HG H N N 356 LEU HD11 H N N 357 LEU HD12 H N N 358 LEU HD13 H N N 359 LEU HD21 H N N 360 LEU HD22 H N N 361 LEU HD23 H N N 362 LEU HXT H N N 363 LYS N N N N 364 LYS CA C N S 365 LYS C C N N 366 LYS O O N N 367 LYS CB C N N 368 LYS CG C N N 369 LYS CD C N N 370 LYS CE C N N 371 LYS NZ N N N 372 LYS OXT O N N 373 LYS H H N N 374 LYS H2 H N N 375 LYS HA H N N 376 LYS HB2 H N N 377 LYS HB3 H N N 378 LYS HG2 H N N 379 LYS HG3 H N N 380 LYS HD2 H N N 381 LYS HD3 H N N 382 LYS HE2 H N N 383 LYS HE3 H N N 384 LYS HZ1 H N N 385 LYS HZ2 H N N 386 LYS HZ3 H N N 387 LYS HXT H N N 388 MET N N N N 389 MET CA C N S 390 MET C C N N 391 MET O O N N 392 MET CB C N N 393 MET CG C N N 394 MET SD S N N 395 MET CE C N N 396 MET OXT O N N 397 MET H H N N 398 MET H2 H N N 399 MET HA H N N 400 MET HB2 H N N 401 MET HB3 H N N 402 MET HG2 H N N 403 MET HG3 H N N 404 MET HE1 H N N 405 MET HE2 H N N 406 MET HE3 H N N 407 MET HXT H N N 408 ORP C1 C N S 409 ORP O1 O N N 410 ORP C2 C N N 411 ORP C3 C N S 412 ORP O3 O N N 413 ORP C4 C N R 414 ORP O4 O N N 415 ORP C5 C N N 416 ORP O5 O N N 417 ORP P P N N 418 ORP O1P O N N 419 ORP O2P O N N 420 ORP O3P O N N 421 ORP H1 H N N 422 ORP HO1 H N N 423 ORP H21 H N N 424 ORP H22 H N N 425 ORP H3 H N N 426 ORP HO3 H N N 427 ORP H4 H N N 428 ORP H51 H N N 429 ORP H52 H N N 430 ORP HOP2 H N N 431 ORP HOP3 H N N 432 PHE N N N N 433 PHE CA C N S 434 PHE C C N N 435 PHE O O N N 436 PHE CB C N N 437 PHE CG C Y N 438 PHE CD1 C Y N 439 PHE CD2 C Y N 440 PHE CE1 C Y N 441 PHE CE2 C Y N 442 PHE CZ C Y N 443 PHE OXT O N N 444 PHE H H N N 445 PHE H2 H N N 446 PHE HA H N N 447 PHE HB2 H N N 448 PHE HB3 H N N 449 PHE HD1 H N N 450 PHE HD2 H N N 451 PHE HE1 H N N 452 PHE HE2 H N N 453 PHE HZ H N N 454 PHE HXT H N N 455 PRO N N N N 456 PRO CA C N S 457 PRO C C N N 458 PRO O O N N 459 PRO CB C N N 460 PRO CG C N N 461 PRO CD C N N 462 PRO OXT O N N 463 PRO H H N N 464 PRO HA H N N 465 PRO HB2 H N N 466 PRO HB3 H N N 467 PRO HG2 H N N 468 PRO HG3 H N N 469 PRO HD2 H N N 470 PRO HD3 H N N 471 PRO HXT H N N 472 SER N N N N 473 SER CA C N S 474 SER C C N N 475 SER O O N N 476 SER CB C N N 477 SER OG O N N 478 SER OXT O N N 479 SER H H N N 480 SER H2 H N N 481 SER HA H N N 482 SER HB2 H N N 483 SER HB3 H N N 484 SER HG H N N 485 SER HXT H N N 486 THR N N N N 487 THR CA C N S 488 THR C C N N 489 THR O O N N 490 THR CB C N R 491 THR OG1 O N N 492 THR CG2 C N N 493 THR OXT O N N 494 THR H H N N 495 THR H2 H N N 496 THR HA H N N 497 THR HB H N N 498 THR HG1 H N N 499 THR HG21 H N N 500 THR HG22 H N N 501 THR HG23 H N N 502 THR HXT H N N 503 TRP N N N N 504 TRP CA C N S 505 TRP C C N N 506 TRP O O N N 507 TRP CB C N N 508 TRP CG C Y N 509 TRP CD1 C Y N 510 TRP CD2 C Y N 511 TRP NE1 N Y N 512 TRP CE2 C Y N 513 TRP CE3 C Y N 514 TRP CZ2 C Y N 515 TRP CZ3 C Y N 516 TRP CH2 C Y N 517 TRP OXT O N N 518 TRP H H N N 519 TRP H2 H N N 520 TRP HA H N N 521 TRP HB2 H N N 522 TRP HB3 H N N 523 TRP HD1 H N N 524 TRP HE1 H N N 525 TRP HE3 H N N 526 TRP HZ2 H N N 527 TRP HZ3 H N N 528 TRP HH2 H N N 529 TRP HXT H N N 530 TYR N N N N 531 TYR CA C N S 532 TYR C C N N 533 TYR O O N N 534 TYR CB C N N 535 TYR CG C Y N 536 TYR CD1 C Y N 537 TYR CD2 C Y N 538 TYR CE1 C Y N 539 TYR CE2 C Y N 540 TYR CZ C Y N 541 TYR OH O N N 542 TYR OXT O N N 543 TYR H H N N 544 TYR H2 H N N 545 TYR HA H N N 546 TYR HB2 H N N 547 TYR HB3 H N N 548 TYR HD1 H N N 549 TYR HD2 H N N 550 TYR HE1 H N N 551 TYR HE2 H N N 552 TYR HH H N N 553 TYR HXT H N N 554 VAL N N N N 555 VAL CA C N S 556 VAL C C N N 557 VAL O O N N 558 VAL CB C N N 559 VAL CG1 C N N 560 VAL CG2 C N N 561 VAL OXT O N N 562 VAL H H N N 563 VAL H2 H N N 564 VAL HA H N N 565 VAL HB H N N 566 VAL HG11 H N N 567 VAL HG12 H N N 568 VAL HG13 H N N 569 VAL HG21 H N N 570 VAL HG22 H N N 571 VAL HG23 H N N 572 VAL HXT H N N 573 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1RT O22 C21 doub N N 1 1RT O23 C21 sing N N 2 1RT N4 C4 sing N N 3 1RT C21 C5 sing N N 4 1RT C4 C5 sing N N 5 1RT C4 N3 doub N N 6 1RT C5 C6 doub N N 7 1RT N3 C2 sing N N 8 1RT C6 N1 sing N N 9 1RT C2 N1 sing N N 10 1RT C2 O2 doub N N 11 1RT N4 H1 sing N N 12 1RT N4 H2 sing N N 13 1RT C6 H4 sing N N 14 1RT O23 H5 sing N N 15 1RT N1 H6 sing N N 16 ALA N CA sing N N 17 ALA N H sing N N 18 ALA N H2 sing N N 19 ALA CA C sing N N 20 ALA CA CB sing N N 21 ALA CA HA sing N N 22 ALA C O doub N N 23 ALA C OXT sing N N 24 ALA CB HB1 sing N N 25 ALA CB HB2 sing N N 26 ALA CB HB3 sing N N 27 ALA OXT HXT sing N N 28 ARG N CA sing N N 29 ARG N H sing N N 30 ARG N H2 sing N N 31 ARG CA C sing N N 32 ARG CA CB sing N N 33 ARG CA HA sing N N 34 ARG C O doub N N 35 ARG C OXT sing N N 36 ARG CB CG sing N N 37 ARG CB HB2 sing N N 38 ARG CB HB3 sing N N 39 ARG CG CD sing N N 40 ARG CG HG2 sing N N 41 ARG CG HG3 sing N N 42 ARG CD NE sing N N 43 ARG CD HD2 sing N N 44 ARG CD HD3 sing N N 45 ARG NE CZ sing N N 46 ARG NE HE sing N N 47 ARG CZ NH1 sing N N 48 ARG CZ NH2 doub N N 49 ARG NH1 HH11 sing N N 50 ARG NH1 HH12 sing N N 51 ARG NH2 HH21 sing N N 52 ARG NH2 HH22 sing N N 53 ARG OXT HXT sing N N 54 ASN N CA sing N N 55 ASN N H sing N N 56 ASN N H2 sing N N 57 ASN CA C sing N N 58 ASN CA CB sing N N 59 ASN CA HA sing N N 60 ASN C O doub N N 61 ASN C OXT sing N N 62 ASN CB CG sing N N 63 ASN CB HB2 sing N N 64 ASN CB HB3 sing N N 65 ASN CG OD1 doub N N 66 ASN CG ND2 sing N N 67 ASN ND2 HD21 sing N N 68 ASN ND2 HD22 sing N N 69 ASN OXT HXT sing N N 70 ASP N CA sing N N 71 ASP N H sing N N 72 ASP N H2 sing N N 73 ASP CA C sing N N 74 ASP CA CB sing N N 75 ASP CA HA sing N N 76 ASP C O doub N N 77 ASP C OXT sing N N 78 ASP CB CG sing N N 79 ASP CB HB2 sing N N 80 ASP CB HB3 sing N N 81 ASP CG OD1 doub N N 82 ASP CG OD2 sing N N 83 ASP OD2 HD2 sing N N 84 ASP OXT HXT sing N N 85 CYS N CA sing N N 86 CYS N H sing N N 87 CYS N H2 sing N N 88 CYS CA C sing N N 89 CYS CA CB sing N N 90 CYS CA HA sing N N 91 CYS C O doub N N 92 CYS C OXT sing N N 93 CYS CB SG sing N N 94 CYS CB HB2 sing N N 95 CYS CB HB3 sing N N 96 CYS SG HG sing N N 97 CYS OXT HXT sing N N 98 DA OP3 P sing N N 99 DA OP3 HOP3 sing N N 100 DA P OP1 doub N N 101 DA P OP2 sing N N 102 DA P "O5'" sing N N 103 DA OP2 HOP2 sing N N 104 DA "O5'" "C5'" sing N N 105 DA "C5'" "C4'" sing N N 106 DA "C5'" "H5'" sing N N 107 DA "C5'" "H5''" sing N N 108 DA "C4'" "O4'" sing N N 109 DA "C4'" "C3'" sing N N 110 DA "C4'" "H4'" sing N N 111 DA "O4'" "C1'" sing N N 112 DA "C3'" "O3'" sing N N 113 DA "C3'" "C2'" sing N N 114 DA "C3'" "H3'" sing N N 115 DA "O3'" "HO3'" sing N N 116 DA "C2'" "C1'" sing N N 117 DA "C2'" "H2'" sing N N 118 DA "C2'" "H2''" sing N N 119 DA "C1'" N9 sing N N 120 DA "C1'" "H1'" sing N N 121 DA N9 C8 sing Y N 122 DA N9 C4 sing Y N 123 DA C8 N7 doub Y N 124 DA C8 H8 sing N N 125 DA N7 C5 sing Y N 126 DA C5 C6 sing Y N 127 DA C5 C4 doub Y N 128 DA C6 N6 sing N N 129 DA C6 N1 doub Y N 130 DA N6 H61 sing N N 131 DA N6 H62 sing N N 132 DA N1 C2 sing Y N 133 DA C2 N3 doub Y N 134 DA C2 H2 sing N N 135 DA N3 C4 sing Y N 136 DC OP3 P sing N N 137 DC OP3 HOP3 sing N N 138 DC P OP1 doub N N 139 DC P OP2 sing N N 140 DC P "O5'" sing N N 141 DC OP2 HOP2 sing N N 142 DC "O5'" "C5'" sing N N 143 DC "C5'" "C4'" sing N N 144 DC "C5'" "H5'" sing N N 145 DC "C5'" "H5''" sing N N 146 DC "C4'" "O4'" sing N N 147 DC "C4'" "C3'" sing N N 148 DC "C4'" "H4'" sing N N 149 DC "O4'" "C1'" sing N N 150 DC "C3'" "O3'" sing N N 151 DC "C3'" "C2'" sing N N 152 DC "C3'" "H3'" sing N N 153 DC "O3'" "HO3'" sing N N 154 DC "C2'" "C1'" sing N N 155 DC "C2'" "H2'" sing N N 156 DC "C2'" "H2''" sing N N 157 DC "C1'" N1 sing N N 158 DC "C1'" "H1'" sing N N 159 DC N1 C2 sing N N 160 DC N1 C6 sing N N 161 DC C2 O2 doub N N 162 DC C2 N3 sing N N 163 DC N3 C4 doub N N 164 DC C4 N4 sing N N 165 DC C4 C5 sing N N 166 DC N4 H41 sing N N 167 DC N4 H42 sing N N 168 DC C5 C6 doub N N 169 DC C5 H5 sing N N 170 DC C6 H6 sing N N 171 DG OP3 P sing N N 172 DG OP3 HOP3 sing N N 173 DG P OP1 doub N N 174 DG P OP2 sing N N 175 DG P "O5'" sing N N 176 DG OP2 HOP2 sing N N 177 DG "O5'" "C5'" sing N N 178 DG "C5'" "C4'" sing N N 179 DG "C5'" "H5'" sing N N 180 DG "C5'" "H5''" sing N N 181 DG "C4'" "O4'" sing N N 182 DG "C4'" "C3'" sing N N 183 DG "C4'" "H4'" sing N N 184 DG "O4'" "C1'" sing N N 185 DG "C3'" "O3'" sing N N 186 DG "C3'" "C2'" sing N N 187 DG "C3'" "H3'" sing N N 188 DG "O3'" "HO3'" sing N N 189 DG "C2'" "C1'" sing N N 190 DG "C2'" "H2'" sing N N 191 DG "C2'" "H2''" sing N N 192 DG "C1'" N9 sing N N 193 DG "C1'" "H1'" sing N N 194 DG N9 C8 sing Y N 195 DG N9 C4 sing Y N 196 DG C8 N7 doub Y N 197 DG C8 H8 sing N N 198 DG N7 C5 sing Y N 199 DG C5 C6 sing N N 200 DG C5 C4 doub Y N 201 DG C6 O6 doub N N 202 DG C6 N1 sing N N 203 DG N1 C2 sing N N 204 DG N1 H1 sing N N 205 DG C2 N2 sing N N 206 DG C2 N3 doub N N 207 DG N2 H21 sing N N 208 DG N2 H22 sing N N 209 DG N3 C4 sing N N 210 DT OP3 P sing N N 211 DT OP3 HOP3 sing N N 212 DT P OP1 doub N N 213 DT P OP2 sing N N 214 DT P "O5'" sing N N 215 DT OP2 HOP2 sing N N 216 DT "O5'" "C5'" sing N N 217 DT "C5'" "C4'" sing N N 218 DT "C5'" "H5'" sing N N 219 DT "C5'" "H5''" sing N N 220 DT "C4'" "O4'" sing N N 221 DT "C4'" "C3'" sing N N 222 DT "C4'" "H4'" sing N N 223 DT "O4'" "C1'" sing N N 224 DT "C3'" "O3'" sing N N 225 DT "C3'" "C2'" sing N N 226 DT "C3'" "H3'" sing N N 227 DT "O3'" "HO3'" sing N N 228 DT "C2'" "C1'" sing N N 229 DT "C2'" "H2'" sing N N 230 DT "C2'" "H2''" sing N N 231 DT "C1'" N1 sing N N 232 DT "C1'" "H1'" sing N N 233 DT N1 C2 sing N N 234 DT N1 C6 sing N N 235 DT C2 O2 doub N N 236 DT C2 N3 sing N N 237 DT N3 C4 sing N N 238 DT N3 H3 sing N N 239 DT C4 O4 doub N N 240 DT C4 C5 sing N N 241 DT C5 C7 sing N N 242 DT C5 C6 doub N N 243 DT C7 H71 sing N N 244 DT C7 H72 sing N N 245 DT C7 H73 sing N N 246 DT C6 H6 sing N N 247 GLN N CA sing N N 248 GLN N H sing N N 249 GLN N H2 sing N N 250 GLN CA C sing N N 251 GLN CA CB sing N N 252 GLN CA HA sing N N 253 GLN C O doub N N 254 GLN C OXT sing N N 255 GLN CB CG sing N N 256 GLN CB HB2 sing N N 257 GLN CB HB3 sing N N 258 GLN CG CD sing N N 259 GLN CG HG2 sing N N 260 GLN CG HG3 sing N N 261 GLN CD OE1 doub N N 262 GLN CD NE2 sing N N 263 GLN NE2 HE21 sing N N 264 GLN NE2 HE22 sing N N 265 GLN OXT HXT sing N N 266 GLU N CA sing N N 267 GLU N H sing N N 268 GLU N H2 sing N N 269 GLU CA C sing N N 270 GLU CA CB sing N N 271 GLU CA HA sing N N 272 GLU C O doub N N 273 GLU C OXT sing N N 274 GLU CB CG sing N N 275 GLU CB HB2 sing N N 276 GLU CB HB3 sing N N 277 GLU CG CD sing N N 278 GLU CG HG2 sing N N 279 GLU CG HG3 sing N N 280 GLU CD OE1 doub N N 281 GLU CD OE2 sing N N 282 GLU OE2 HE2 sing N N 283 GLU OXT HXT sing N N 284 GLY N CA sing N N 285 GLY N H sing N N 286 GLY N H2 sing N N 287 GLY CA C sing N N 288 GLY CA HA2 sing N N 289 GLY CA HA3 sing N N 290 GLY C O doub N N 291 GLY C OXT sing N N 292 GLY OXT HXT sing N N 293 HIS N CA sing N N 294 HIS N H sing N N 295 HIS N H2 sing N N 296 HIS CA C sing N N 297 HIS CA CB sing N N 298 HIS CA HA sing N N 299 HIS C O doub N N 300 HIS C OXT sing N N 301 HIS CB CG sing N N 302 HIS CB HB2 sing N N 303 HIS CB HB3 sing N N 304 HIS CG ND1 sing Y N 305 HIS CG CD2 doub Y N 306 HIS ND1 CE1 doub Y N 307 HIS ND1 HD1 sing N N 308 HIS CD2 NE2 sing Y N 309 HIS CD2 HD2 sing N N 310 HIS CE1 NE2 sing Y N 311 HIS CE1 HE1 sing N N 312 HIS NE2 HE2 sing N N 313 HIS OXT HXT sing N N 314 HOH O H1 sing N N 315 HOH O H2 sing N N 316 ILE N CA sing N N 317 ILE N H sing N N 318 ILE N H2 sing N N 319 ILE CA C sing N N 320 ILE CA CB sing N N 321 ILE CA HA sing N N 322 ILE C O doub N N 323 ILE C OXT sing N N 324 ILE CB CG1 sing N N 325 ILE CB CG2 sing N N 326 ILE CB HB sing N N 327 ILE CG1 CD1 sing N N 328 ILE CG1 HG12 sing N N 329 ILE CG1 HG13 sing N N 330 ILE CG2 HG21 sing N N 331 ILE CG2 HG22 sing N N 332 ILE CG2 HG23 sing N N 333 ILE CD1 HD11 sing N N 334 ILE CD1 HD12 sing N N 335 ILE CD1 HD13 sing N N 336 ILE OXT HXT sing N N 337 LEU N CA sing N N 338 LEU N H sing N N 339 LEU N H2 sing N N 340 LEU CA C sing N N 341 LEU CA CB sing N N 342 LEU CA HA sing N N 343 LEU C O doub N N 344 LEU C OXT sing N N 345 LEU CB CG sing N N 346 LEU CB HB2 sing N N 347 LEU CB HB3 sing N N 348 LEU CG CD1 sing N N 349 LEU CG CD2 sing N N 350 LEU CG HG sing N N 351 LEU CD1 HD11 sing N N 352 LEU CD1 HD12 sing N N 353 LEU CD1 HD13 sing N N 354 LEU CD2 HD21 sing N N 355 LEU CD2 HD22 sing N N 356 LEU CD2 HD23 sing N N 357 LEU OXT HXT sing N N 358 LYS N CA sing N N 359 LYS N H sing N N 360 LYS N H2 sing N N 361 LYS CA C sing N N 362 LYS CA CB sing N N 363 LYS CA HA sing N N 364 LYS C O doub N N 365 LYS C OXT sing N N 366 LYS CB CG sing N N 367 LYS CB HB2 sing N N 368 LYS CB HB3 sing N N 369 LYS CG CD sing N N 370 LYS CG HG2 sing N N 371 LYS CG HG3 sing N N 372 LYS CD CE sing N N 373 LYS CD HD2 sing N N 374 LYS CD HD3 sing N N 375 LYS CE NZ sing N N 376 LYS CE HE2 sing N N 377 LYS CE HE3 sing N N 378 LYS NZ HZ1 sing N N 379 LYS NZ HZ2 sing N N 380 LYS NZ HZ3 sing N N 381 LYS OXT HXT sing N N 382 MET N CA sing N N 383 MET N H sing N N 384 MET N H2 sing N N 385 MET CA C sing N N 386 MET CA CB sing N N 387 MET CA HA sing N N 388 MET C O doub N N 389 MET C OXT sing N N 390 MET CB CG sing N N 391 MET CB HB2 sing N N 392 MET CB HB3 sing N N 393 MET CG SD sing N N 394 MET CG HG2 sing N N 395 MET CG HG3 sing N N 396 MET SD CE sing N N 397 MET CE HE1 sing N N 398 MET CE HE2 sing N N 399 MET CE HE3 sing N N 400 MET OXT HXT sing N N 401 ORP C1 O1 sing N N 402 ORP C1 C2 sing N N 403 ORP C1 O4 sing N N 404 ORP C1 H1 sing N N 405 ORP O1 HO1 sing N N 406 ORP C2 C3 sing N N 407 ORP C2 H21 sing N N 408 ORP C2 H22 sing N N 409 ORP C3 O3 sing N N 410 ORP C3 C4 sing N N 411 ORP C3 H3 sing N N 412 ORP O3 HO3 sing N N 413 ORP C4 O4 sing N N 414 ORP C4 C5 sing N N 415 ORP C4 H4 sing N N 416 ORP C5 O5 sing N N 417 ORP C5 H51 sing N N 418 ORP C5 H52 sing N N 419 ORP O5 P sing N N 420 ORP P O1P doub N N 421 ORP P O2P sing N N 422 ORP P O3P sing N N 423 ORP O2P HOP2 sing N N 424 ORP O3P HOP3 sing N N 425 PHE N CA sing N N 426 PHE N H sing N N 427 PHE N H2 sing N N 428 PHE CA C sing N N 429 PHE CA CB sing N N 430 PHE CA HA sing N N 431 PHE C O doub N N 432 PHE C OXT sing N N 433 PHE CB CG sing N N 434 PHE CB HB2 sing N N 435 PHE CB HB3 sing N N 436 PHE CG CD1 doub Y N 437 PHE CG CD2 sing Y N 438 PHE CD1 CE1 sing Y N 439 PHE CD1 HD1 sing N N 440 PHE CD2 CE2 doub Y N 441 PHE CD2 HD2 sing N N 442 PHE CE1 CZ doub Y N 443 PHE CE1 HE1 sing N N 444 PHE CE2 CZ sing Y N 445 PHE CE2 HE2 sing N N 446 PHE CZ HZ sing N N 447 PHE OXT HXT sing N N 448 PRO N CA sing N N 449 PRO N CD sing N N 450 PRO N H sing N N 451 PRO CA C sing N N 452 PRO CA CB sing N N 453 PRO CA HA sing N N 454 PRO C O doub N N 455 PRO C OXT sing N N 456 PRO CB CG sing N N 457 PRO CB HB2 sing N N 458 PRO CB HB3 sing N N 459 PRO CG CD sing N N 460 PRO CG HG2 sing N N 461 PRO CG HG3 sing N N 462 PRO CD HD2 sing N N 463 PRO CD HD3 sing N N 464 PRO OXT HXT sing N N 465 SER N CA sing N N 466 SER N H sing N N 467 SER N H2 sing N N 468 SER CA C sing N N 469 SER CA CB sing N N 470 SER CA HA sing N N 471 SER C O doub N N 472 SER C OXT sing N N 473 SER CB OG sing N N 474 SER CB HB2 sing N N 475 SER CB HB3 sing N N 476 SER OG HG sing N N 477 SER OXT HXT sing N N 478 THR N CA sing N N 479 THR N H sing N N 480 THR N H2 sing N N 481 THR CA C sing N N 482 THR CA CB sing N N 483 THR CA HA sing N N 484 THR C O doub N N 485 THR C OXT sing N N 486 THR CB OG1 sing N N 487 THR CB CG2 sing N N 488 THR CB HB sing N N 489 THR OG1 HG1 sing N N 490 THR CG2 HG21 sing N N 491 THR CG2 HG22 sing N N 492 THR CG2 HG23 sing N N 493 THR OXT HXT sing N N 494 TRP N CA sing N N 495 TRP N H sing N N 496 TRP N H2 sing N N 497 TRP CA C sing N N 498 TRP CA CB sing N N 499 TRP CA HA sing N N 500 TRP C O doub N N 501 TRP C OXT sing N N 502 TRP CB CG sing N N 503 TRP CB HB2 sing N N 504 TRP CB HB3 sing N N 505 TRP CG CD1 doub Y N 506 TRP CG CD2 sing Y N 507 TRP CD1 NE1 sing Y N 508 TRP CD1 HD1 sing N N 509 TRP CD2 CE2 doub Y N 510 TRP CD2 CE3 sing Y N 511 TRP NE1 CE2 sing Y N 512 TRP NE1 HE1 sing N N 513 TRP CE2 CZ2 sing Y N 514 TRP CE3 CZ3 doub Y N 515 TRP CE3 HE3 sing N N 516 TRP CZ2 CH2 doub Y N 517 TRP CZ2 HZ2 sing N N 518 TRP CZ3 CH2 sing Y N 519 TRP CZ3 HZ3 sing N N 520 TRP CH2 HH2 sing N N 521 TRP OXT HXT sing N N 522 TYR N CA sing N N 523 TYR N H sing N N 524 TYR N H2 sing N N 525 TYR CA C sing N N 526 TYR CA CB sing N N 527 TYR CA HA sing N N 528 TYR C O doub N N 529 TYR C OXT sing N N 530 TYR CB CG sing N N 531 TYR CB HB2 sing N N 532 TYR CB HB3 sing N N 533 TYR CG CD1 doub Y N 534 TYR CG CD2 sing Y N 535 TYR CD1 CE1 sing Y N 536 TYR CD1 HD1 sing N N 537 TYR CD2 CE2 doub Y N 538 TYR CD2 HD2 sing N N 539 TYR CE1 CZ doub Y N 540 TYR CE1 HE1 sing N N 541 TYR CE2 CZ sing Y N 542 TYR CE2 HE2 sing N N 543 TYR CZ OH sing N N 544 TYR OH HH sing N N 545 TYR OXT HXT sing N N 546 VAL N CA sing N N 547 VAL N H sing N N 548 VAL N H2 sing N N 549 VAL CA C sing N N 550 VAL CA CB sing N N 551 VAL CA HA sing N N 552 VAL C O doub N N 553 VAL C OXT sing N N 554 VAL CB CG1 sing N N 555 VAL CB CG2 sing N N 556 VAL CB HB sing N N 557 VAL CG1 HG11 sing N N 558 VAL CG1 HG12 sing N N 559 VAL CG1 HG13 sing N N 560 VAL CG2 HG21 sing N N 561 VAL CG2 HG22 sing N N 562 VAL CG2 HG23 sing N N 563 VAL OXT HXT sing N N 564 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4JGC 'double helix' 4JGC 'b-form double helix' 4JGC 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 1 1_555 C DG 28 1_555 -0.304 -0.295 0.096 8.097 -5.400 -2.817 1 C_DC1:DG28_D C 1 ? D 28 ? 19 1 1 B DA 2 1_555 C DT 27 1_555 -0.104 -0.165 0.576 12.695 -10.742 2.535 2 C_DA2:DT27_D C 2 ? D 27 ? 20 1 1 B DG 3 1_555 C DC 26 1_555 -0.554 -0.466 0.787 17.845 -15.821 4.107 3 C_DG3:DC26_D C 3 ? D 26 ? 19 1 1 B DC 4 1_555 C DG 25 1_555 -0.357 -0.069 0.277 -2.219 -15.831 6.050 4 C_DC4:DG25_D C 4 ? D 25 ? 19 1 1 B DT 5 1_555 C DA 24 1_555 -0.033 -0.166 0.390 -0.855 -14.123 -1.069 5 C_DT5:DA24_D C 5 ? D 24 ? 20 1 1 B DC 6 1_555 C DG 23 1_555 -0.437 -0.337 0.534 -11.620 -10.707 -0.174 6 C_DC6:DG23_D C 6 ? D 23 ? 19 1 1 B DT 7 1_555 C DA 22 1_555 -0.875 -0.161 0.197 -3.995 -15.559 -4.028 7 C_DT7:DA22_D C 7 ? D 22 ? 20 1 1 B DG 8 1_555 C DC 21 1_555 -0.356 -0.349 -0.305 -7.080 -5.461 -2.830 8 C_DG8:DC21_D C 8 ? D 21 ? 19 1 1 B DT 9 1_555 C DA 20 1_555 -0.402 -0.359 0.068 -1.230 -19.469 -4.471 9 C_DT9:DA20_D C 9 ? D 20 ? 20 1 1 B DA 10 1_555 C DT 19 1_555 -0.163 -0.279 0.336 2.462 -9.862 1.902 10 C_DA10:DT19_D C 10 ? D 19 ? 20 1 1 B DC 11 1_555 C DG 18 1_555 0.491 0.014 -0.010 12.179 -15.527 1.651 11 C_DC11:DG18_D C 11 ? D 18 ? 19 1 1 B DT 13 1_555 C DA 16 1_555 -0.884 -0.042 0.444 -15.042 -17.029 -4.803 12 C_DT13:DA16_D C 13 ? D 16 ? 20 1 1 B DG 14 1_555 C DC 15 1_555 0.313 0.042 -0.515 -9.905 -13.746 4.157 13 C_DG14:DC15_D C 14 ? D 15 ? 19 1 1 B DA 15 1_555 C DT 14 1_555 0.080 0.178 -0.200 -12.330 -7.527 -4.702 14 C_DA15:DT14_D C 15 ? D 14 ? 20 1 1 B DG 16 1_555 C DC 13 1_555 0.082 -0.215 0.536 7.127 -17.373 -1.261 15 C_DG16:DC13_D C 16 ? D 13 ? 19 1 1 B DC 17 1_555 C DG 12 1_555 0.758 -0.264 0.578 -3.476 -20.620 4.495 16 C_DC17:DG12_D C 17 ? D 12 ? 19 1 1 B DA 18 1_555 C DT 11 1_555 0.160 -0.449 0.491 10.968 -23.497 -4.909 17 C_DA18:DT11_D C 18 ? D 11 ? 20 1 1 B DG 19 1_555 C DC 10 1_555 -0.269 -0.104 0.297 -2.238 -15.823 2.187 18 C_DG19:DC10_D C 19 ? D 10 ? 19 1 1 B DT 20 1_555 C DA 9 1_555 0.067 -0.126 0.602 -5.118 -20.746 -0.572 19 C_DT20:DA9_D C 20 ? D 9 ? 20 1 1 B DG 21 1_555 C DC 8 1_555 -0.374 -0.508 -0.208 -8.010 -8.084 -2.437 20 C_DG21:DC8_D C 21 ? D 8 ? 19 1 1 B DG 22 1_555 C DC 7 1_555 -0.952 0.096 0.127 -5.604 -15.637 4.232 21 C_DG22:DC7_D C 22 ? D 7 ? 19 1 1 B DA 23 1_555 C DT 6 1_555 0.797 -0.153 0.118 -6.859 -12.857 -9.781 22 C_DA23:DT6_D C 23 ? D 6 ? 20 1 1 B DC 24 1_555 C DG 5 1_555 0.608 -0.219 0.454 7.161 -11.371 7.592 23 C_DC24:DG5_D C 24 ? D 5 ? 19 1 1 B DA 25 1_555 C DT 4 1_555 -0.558 -0.345 -0.279 1.179 -14.109 -9.346 24 C_DA25:DT4_D C 25 ? D 4 ? 20 1 1 B DG 26 1_555 C DC 3 1_555 -0.563 0.085 0.146 4.642 -17.551 4.909 25 C_DG26:DC3_D C 26 ? D 3 ? 19 1 1 B DC 27 1_555 C DG 2 1_555 0.491 -0.094 0.451 -3.695 -22.854 6.515 26 C_DC27:DG2_D C 27 ? D 2 ? 19 1 1 B DT 28 1_555 C DA 1 1_555 -0.634 -0.146 0.040 2.118 -14.606 2.288 27 C_DT28:DA1_D C 28 ? D 1 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 1 1_555 C DG 28 1_555 B DA 2 1_555 C DT 27 1_555 0.519 -0.270 3.270 -0.620 -2.282 38.964 -0.129 -0.851 3.272 -3.417 0.929 39.033 1 CC_DC1DA2:DT27DG28_DD C 1 ? D 28 ? C 2 ? D 27 ? 1 B DA 2 1_555 C DT 27 1_555 B DG 3 1_555 C DC 26 1_555 0.227 -0.546 3.068 -5.119 7.608 30.164 -2.302 -1.290 2.776 14.211 9.563 31.496 2 CC_DA2DG3:DC26DT27_DD C 2 ? D 27 ? C 3 ? D 26 ? 1 B DG 3 1_555 C DC 26 1_555 B DC 4 1_555 C DG 25 1_555 -0.074 -0.700 3.753 3.142 -4.055 37.085 -0.473 0.594 3.787 -6.339 -4.912 37.425 3 CC_DG3DC4:DG25DC26_DD C 3 ? D 26 ? C 4 ? D 25 ? 1 B DC 4 1_555 C DG 25 1_555 B DT 5 1_555 C DA 24 1_555 -0.475 -0.337 3.305 -0.534 0.620 35.992 -0.634 0.692 3.305 1.004 0.864 36.001 4 CC_DC4DT5:DA24DG25_DD C 4 ? D 25 ? C 5 ? D 24 ? 1 B DT 5 1_555 C DA 24 1_555 B DC 6 1_555 C DG 23 1_555 0.571 -0.076 3.386 1.863 1.671 39.070 -0.321 -0.620 3.403 2.495 -2.782 39.147 5 CC_DT5DC6:DG23DA24_DD C 5 ? D 24 ? C 6 ? D 23 ? 1 B DC 6 1_555 C DG 23 1_555 B DT 7 1_555 C DA 22 1_555 -0.413 -0.260 3.101 2.512 4.098 30.300 -1.249 1.244 2.997 7.779 -4.768 30.670 6 CC_DC6DT7:DA22DG23_DD C 6 ? D 23 ? C 7 ? D 22 ? 1 B DT 7 1_555 C DA 22 1_555 B DG 8 1_555 C DC 21 1_555 0.473 0.515 3.434 2.694 6.303 39.257 -0.022 -0.362 3.496 9.295 -3.973 39.828 7 CC_DT7DG8:DC21DA22_DD C 7 ? D 22 ? C 8 ? D 21 ? 1 B DG 8 1_555 C DC 21 1_555 B DT 9 1_555 C DA 20 1_555 -0.322 -0.368 3.149 -3.084 0.661 28.942 -0.873 -0.012 3.156 1.318 6.147 29.110 8 CC_DG8DT9:DA20DC21_DD C 8 ? D 21 ? C 9 ? D 20 ? 1 B DT 9 1_555 C DA 20 1_555 B DA 10 1_555 C DT 19 1_555 0.339 0.538 3.281 -2.740 6.561 37.491 -0.018 -0.870 3.293 10.097 4.216 38.135 9 CC_DT9DA10:DT19DA20_DD C 9 ? D 20 ? C 10 ? D 19 ? 1 B DA 10 1_555 C DT 19 1_555 B DC 11 1_555 C DG 18 1_555 -0.178 -0.021 3.121 2.045 -0.608 37.009 0.044 0.541 3.107 -0.957 -3.218 37.069 10 CC_DA10DC11:DG18DT19_DD C 10 ? D 19 ? C 11 ? D 18 ? 1 B DT 13 1_555 C DA 16 1_555 B DG 14 1_555 C DC 15 1_555 0.927 1.523 3.409 7.486 6.669 41.625 1.352 -0.445 3.704 9.225 -10.354 42.764 11 CC_DT13DG14:DC15DA16_DD C 13 ? D 16 ? C 14 ? D 15 ? 1 B DG 14 1_555 C DC 15 1_555 B DA 15 1_555 C DT 14 1_555 -1.272 0.433 3.285 -7.363 4.282 34.190 0.045 0.948 3.502 7.147 12.288 35.204 12 CC_DG14DA15:DT14DC15_DD C 14 ? D 15 ? C 15 ? D 14 ? 1 B DA 15 1_555 C DT 14 1_555 B DG 16 1_555 C DC 13 1_555 0.398 -0.277 2.846 -7.015 5.517 34.791 -1.123 -1.503 2.645 9.044 11.499 35.883 13 CC_DA15DG16:DC13DT14_DD C 15 ? D 14 ? C 16 ? D 13 ? 1 B DG 16 1_555 C DC 13 1_555 B DC 17 1_555 C DG 12 1_555 -0.463 -0.251 3.560 -0.510 -6.546 38.192 0.501 0.630 3.559 -9.914 0.773 38.731 14 CC_DG16DC17:DG12DC13_DD C 16 ? D 13 ? C 17 ? D 12 ? 1 B DC 17 1_555 C DG 12 1_555 B DA 18 1_555 C DT 11 1_555 -0.571 0.374 2.934 0.839 11.769 30.730 -1.188 1.142 2.865 21.250 -1.515 32.866 15 CC_DC17DA18:DT11DG12_DD C 17 ? D 12 ? C 18 ? D 11 ? 1 B DA 18 1_555 C DT 11 1_555 B DG 19 1_555 C DC 10 1_555 0.326 -0.501 3.512 0.209 -0.001 36.043 -0.810 -0.495 3.514 -0.002 -0.337 36.044 16 CC_DA18DG19:DC10DT11_DD C 18 ? D 11 ? C 19 ? D 10 ? 1 B DG 19 1_555 C DC 10 1_555 B DT 20 1_555 C DA 9 1_555 -0.531 -0.883 3.326 -1.878 -0.827 32.241 -1.437 0.614 3.371 -1.488 3.377 32.304 17 CC_DG19DT20:DA9DC10_DD C 19 ? D 10 ? C 20 ? D 9 ? 1 B DT 20 1_555 C DA 9 1_555 B DG 21 1_555 C DC 8 1_555 0.587 0.453 3.423 6.441 3.988 34.681 0.118 0.047 3.501 6.593 -10.647 35.474 18 CC_DT20DG21:DC8DA9_DD C 20 ? D 9 ? C 21 ? D 8 ? 1 B DG 21 1_555 C DC 8 1_555 B DG 22 1_555 C DC 7 1_555 -0.460 0.539 3.153 -5.087 1.079 33.094 0.761 -0.021 3.202 1.880 8.861 33.489 19 CC_DG21DG22:DC7DC8_DD C 21 ? D 8 ? C 22 ? D 7 ? 1 B DG 22 1_555 C DC 7 1_555 B DA 23 1_555 C DT 6 1_555 -1.006 -0.024 3.333 -4.609 0.604 43.659 -0.092 0.894 3.416 0.810 6.177 43.893 20 CC_DG22DA23:DT6DC7_DD C 22 ? D 7 ? C 23 ? D 6 ? 1 B DA 23 1_555 C DT 6 1_555 B DC 24 1_555 C DG 5 1_555 1.407 -0.521 2.998 -1.539 4.087 28.659 -1.848 -3.114 2.820 8.196 3.087 28.983 21 CC_DA23DC24:DG5DT6_DD C 23 ? D 6 ? C 24 ? D 5 ? 1 B DC 24 1_555 C DG 5 1_555 B DA 25 1_555 C DT 4 1_555 -1.341 0.527 3.545 1.798 -0.263 33.444 0.961 2.644 3.466 -0.456 -3.122 33.492 22 CC_DC24DA25:DT4DG5_DD C 24 ? D 5 ? C 25 ? D 4 ? 1 B DA 25 1_555 C DT 4 1_555 B DG 26 1_555 C DC 3 1_555 0.265 -0.273 3.168 -4.042 5.737 33.475 -1.332 -1.062 3.030 9.826 6.922 34.182 23 CC_DA25DG26:DC3DT4_DD C 25 ? D 4 ? C 26 ? D 3 ? 1 B DG 26 1_555 C DC 3 1_555 B DC 27 1_555 C DG 2 1_555 0.209 -0.256 3.565 -2.898 -1.474 37.592 -0.189 -0.732 3.547 -2.283 4.487 37.728 24 CC_DG26DC27:DG2DC3_DD C 26 ? D 3 ? C 27 ? D 2 ? 1 B DC 27 1_555 C DG 2 1_555 B DT 28 1_555 C DA 1 1_555 0.048 -0.285 2.979 6.317 9.913 27.336 -2.429 1.100 2.662 19.851 -12.650 29.711 25 CC_DC27DT28:DA1DG2_DD C 27 ? D 2 ? C 28 ? D 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 '4-amino-2-oxo-1,2-dihydropyrimidine-5-carboxylic acid' 1RT 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4FNC _pdbx_initial_refinement_model.details 'PDB ENTRY 4FNC' #