HEADER TRANSCRIPTION 04-MAR-13 4JGV TITLE CRYSTAL STRUCTURE OF HUMAN NUR77 LIGAND-BINDING DOMAIN IN COMPLEX WITH TITLE 2 THPN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR RECEPTOR SUBFAMILY 4 GROUP A MEMBER 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LIGAND BINDING DOMAIN, UNP RESIDUES 351-598; COMPND 5 SYNONYM: EARLY RESPONSE PROTEIN NAK1, NUCLEAR HORMONE RECEPTOR COMPND 6 NUR/77, NUR77, ORPHAN NUCLEAR RECEPTOR HMR, ORPHAN NUCLEAR RECEPTOR COMPND 7 TR3, ST-59, TESTICULAR RECEPTOR 3; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NR4A1, GFRP1, HMR, NAK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR Q.ZHANG,F.LI,A.LI,X.TIAN,W.WAN,Y.WAN,H.CHEN,Y.XING,Q.WU,T.LIN REVDAT 3 20-MAR-24 4JGV 1 REMARK SEQADV REVDAT 2 19-MAR-14 4JGV 1 JRNL REVDAT 1 18-DEC-13 4JGV 0 JRNL AUTH W.WANG,Y.WANG,H.CHEN,Y.XING,F.LI,Q.ZHANG,B.ZHOU,H.ZHANG, JRNL AUTH 2 J.ZHANG,X.BIAN,L.LI,Y.LIU,B.ZHAO,Y.CHEN,R.WU,A.LI,L.YAO, JRNL AUTH 3 P.CHEN,Y.ZHANG,X.TIAN,F.BEERMANN,M.WU,J.HAN,P.HUANG,T.LIN, JRNL AUTH 4 Q.WU JRNL TITL ORPHAN NUCLEAR RECEPTOR TR3 ACTS IN AUTOPHAGIC CELL DEATH JRNL TITL 2 VIA MITOCHONDRIAL SIGNALING PATHWAY. JRNL REF NAT.CHEM.BIOL. V. 10 133 2014 JRNL REFN ISSN 1552-4450 JRNL PMID 24316735 JRNL DOI 10.1038/NCHEMBIO.1406 REMARK 2 REMARK 2 RESOLUTION. 3.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 14304 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 757 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1020 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE SET COUNT : 57 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3616 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 61 REMARK 3 SOLVENT ATOMS : 216 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.53000 REMARK 3 B22 (A**2) : 0.92000 REMARK 3 B33 (A**2) : -1.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.409 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.282 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.362 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3743 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3733 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5051 ; 1.484 ; 2.013 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8599 ; 1.079 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 452 ; 5.767 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 155 ;34.880 ;23.290 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 653 ;18.751 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;25.049 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 587 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4050 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 808 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 362 598 B 362 598 13244 0.15 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4JGV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000078029. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97924 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15103 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7% PEG 6000, PH 4.8, VAPOR DIFFUSION, REMARK 280 HANGING DROP, EVAPORATION, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.04200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.06850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.45000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.06850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.04200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.45000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 350 REMARK 465 SER A 351 REMARK 465 LYS A 352 REMARK 465 PRO A 353 REMARK 465 LYS A 354 REMARK 465 GLN A 355 REMARK 465 PRO A 356 REMARK 465 PRO A 357 REMARK 465 ASP A 358 REMARK 465 ALA A 359 REMARK 465 SER A 360 REMARK 465 PRO A 361 REMARK 465 GLY A 544 REMARK 465 GLN A 547 REMARK 465 SER A 550 REMARK 465 CYS A 551 REMARK 465 SER B 350 REMARK 465 SER B 351 REMARK 465 LYS B 352 REMARK 465 PRO B 353 REMARK 465 LYS B 354 REMARK 465 GLN B 355 REMARK 465 PRO B 356 REMARK 465 PRO B 357 REMARK 465 ASP B 358 REMARK 465 ALA B 359 REMARK 465 SER B 360 REMARK 465 PRO B 361 REMARK 465 HIS B 394 REMARK 465 PHE B 395 REMARK 465 GLY B 396 REMARK 465 ALA B 543 REMARK 465 GLY B 544 REMARK 465 GLU B 545 REMARK 465 PRO B 546 REMARK 465 GLN B 547 REMARK 465 PRO B 548 REMARK 465 ALA B 549 REMARK 465 SER B 550 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1 GOL A 606 O HOH A 758 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 450 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 431 131.45 -38.82 REMARK 500 SER B 431 129.93 -39.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE T94 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KZI RELATED DB: PDB REMARK 900 RELATED ID: 4KZJ RELATED DB: PDB REMARK 900 RELATED ID: 4KZM RELATED DB: PDB DBREF 4JGV A 351 598 UNP P22736 NR4A1_HUMAN 351 598 DBREF 4JGV B 351 598 UNP P22736 NR4A1_HUMAN 351 598 SEQADV 4JGV SER A 350 UNP P22736 EXPRESSION TAG SEQADV 4JGV SER B 350 UNP P22736 EXPRESSION TAG SEQRES 1 A 249 SER SER LYS PRO LYS GLN PRO PRO ASP ALA SER PRO ALA SEQRES 2 A 249 ASN LEU LEU THR SER LEU VAL ARG ALA HIS LEU ASP SER SEQRES 3 A 249 GLY PRO SER THR ALA LYS LEU ASP TYR SER LYS PHE GLN SEQRES 4 A 249 GLU LEU VAL LEU PRO HIS PHE GLY LYS GLU ASP ALA GLY SEQRES 5 A 249 ASP VAL GLN GLN PHE TYR ASP LEU LEU SER GLY SER LEU SEQRES 6 A 249 GLU VAL ILE ARG LYS TRP ALA GLU LYS ILE PRO GLY PHE SEQRES 7 A 249 ALA GLU LEU SER PRO ALA ASP GLN ASP LEU LEU LEU GLU SEQRES 8 A 249 SER ALA PHE LEU GLU LEU PHE ILE LEU ARG LEU ALA TYR SEQRES 9 A 249 ARG SER LYS PRO GLY GLU GLY LYS LEU ILE PHE CYS SER SEQRES 10 A 249 GLY LEU VAL LEU HIS ARG LEU GLN CYS ALA ARG GLY PHE SEQRES 11 A 249 GLY ASP TRP ILE ASP SER ILE LEU ALA PHE SER ARG SER SEQRES 12 A 249 LEU HIS SER LEU LEU VAL ASP VAL PRO ALA PHE ALA CYS SEQRES 13 A 249 LEU SER ALA LEU VAL LEU ILE THR ASP ARG HIS GLY LEU SEQRES 14 A 249 GLN GLU PRO ARG ARG VAL GLU GLU LEU GLN ASN ARG ILE SEQRES 15 A 249 ALA SER CYS LEU LYS GLU HIS VAL ALA ALA VAL ALA GLY SEQRES 16 A 249 GLU PRO GLN PRO ALA SER CYS LEU SER ARG LEU LEU GLY SEQRES 17 A 249 LYS LEU PRO GLU LEU ARG THR LEU CYS THR GLN GLY LEU SEQRES 18 A 249 GLN ARG ILE PHE TYR LEU LYS LEU GLU ASP LEU VAL PRO SEQRES 19 A 249 PRO PRO PRO ILE ILE ASP LYS ILE PHE MET ASP THR LEU SEQRES 20 A 249 PRO PHE SEQRES 1 B 249 SER SER LYS PRO LYS GLN PRO PRO ASP ALA SER PRO ALA SEQRES 2 B 249 ASN LEU LEU THR SER LEU VAL ARG ALA HIS LEU ASP SER SEQRES 3 B 249 GLY PRO SER THR ALA LYS LEU ASP TYR SER LYS PHE GLN SEQRES 4 B 249 GLU LEU VAL LEU PRO HIS PHE GLY LYS GLU ASP ALA GLY SEQRES 5 B 249 ASP VAL GLN GLN PHE TYR ASP LEU LEU SER GLY SER LEU SEQRES 6 B 249 GLU VAL ILE ARG LYS TRP ALA GLU LYS ILE PRO GLY PHE SEQRES 7 B 249 ALA GLU LEU SER PRO ALA ASP GLN ASP LEU LEU LEU GLU SEQRES 8 B 249 SER ALA PHE LEU GLU LEU PHE ILE LEU ARG LEU ALA TYR SEQRES 9 B 249 ARG SER LYS PRO GLY GLU GLY LYS LEU ILE PHE CYS SER SEQRES 10 B 249 GLY LEU VAL LEU HIS ARG LEU GLN CYS ALA ARG GLY PHE SEQRES 11 B 249 GLY ASP TRP ILE ASP SER ILE LEU ALA PHE SER ARG SER SEQRES 12 B 249 LEU HIS SER LEU LEU VAL ASP VAL PRO ALA PHE ALA CYS SEQRES 13 B 249 LEU SER ALA LEU VAL LEU ILE THR ASP ARG HIS GLY LEU SEQRES 14 B 249 GLN GLU PRO ARG ARG VAL GLU GLU LEU GLN ASN ARG ILE SEQRES 15 B 249 ALA SER CYS LEU LYS GLU HIS VAL ALA ALA VAL ALA GLY SEQRES 16 B 249 GLU PRO GLN PRO ALA SER CYS LEU SER ARG LEU LEU GLY SEQRES 17 B 249 LYS LEU PRO GLU LEU ARG THR LEU CYS THR GLN GLY LEU SEQRES 18 B 249 GLN ARG ILE PHE TYR LEU LYS LEU GLU ASP LEU VAL PRO SEQRES 19 B 249 PRO PRO PRO ILE ILE ASP LYS ILE PHE MET ASP THR LEU SEQRES 20 B 249 PRO PHE HET T94 A 601 19 HET GOL A 602 6 HET GOL A 603 6 HET GOL A 604 6 HET GOL A 605 6 HET GOL A 606 6 HET GOL A 607 6 HET GOL B 601 6 HETNAM T94 1-(3,4,5-TRIHYDROXYPHENYL)NONAN-1-ONE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 T94 C15 H22 O4 FORMUL 4 GOL 7(C3 H8 O3) FORMUL 11 HOH *216(H2 O) HELIX 1 1 ALA A 362 SER A 375 1 14 HELIX 2 2 SER A 378 LEU A 382 5 5 HELIX 3 3 ASP A 399 LYS A 423 1 25 HELIX 4 4 GLY A 426 LEU A 430 5 5 HELIX 5 5 SER A 431 SER A 455 1 25 HELIX 6 6 LYS A 456 GLU A 459 5 4 HELIX 7 7 ARG A 472 GLY A 480 1 9 HELIX 8 8 ASP A 481 LEU A 496 1 16 HELIX 9 9 ASP A 499 ILE A 512 1 14 HELIX 10 10 GLU A 520 ALA A 543 1 24 HELIX 11 11 SER A 553 GLY A 557 1 5 HELIX 12 12 LYS A 558 ASP A 580 1 23 HELIX 13 13 PRO A 585 THR A 595 1 11 HELIX 14 14 ASN B 363 ASP B 374 1 12 HELIX 15 15 SER B 378 LEU B 382 5 5 HELIX 16 16 ASP B 399 LYS B 423 1 25 HELIX 17 17 GLY B 426 LEU B 430 5 5 HELIX 18 18 SER B 431 SER B 455 1 25 HELIX 19 19 LYS B 456 GLU B 459 5 4 HELIX 20 20 ARG B 472 GLY B 480 1 9 HELIX 21 21 ASP B 481 LEU B 496 1 16 HELIX 22 22 ASP B 499 ILE B 512 1 14 HELIX 23 23 GLU B 520 VAL B 542 1 23 HELIX 24 24 GLY B 557 ASP B 580 1 24 HELIX 25 25 PRO B 585 THR B 595 1 11 SHEET 1 A 2 LYS A 461 ILE A 463 0 SHEET 2 A 2 VAL A 469 HIS A 471 -1 O LEU A 470 N LEU A 462 SHEET 1 B 2 LYS B 461 ILE B 463 0 SHEET 2 B 2 VAL B 469 HIS B 471 -1 O LEU B 470 N LEU B 462 CISPEP 1 PRO A 548 ALA A 549 0 10.66 CISPEP 2 LEU B 392 PRO B 393 0 8.69 SITE 1 AC1 11 GLU A 389 LEU A 390 HIS A 471 LEU A 509 SITE 2 AC1 11 VAL A 510 ILE A 512 THR A 513 GLN A 528 SITE 3 AC1 11 LEU A 555 LYS A 558 HOH A 816 SITE 1 AC2 10 PRO A 457 GLY A 458 ARG A 491 ARG A 515 SITE 2 AC2 10 HIS A 516 GLY A 517 LEU A 518 GOL A 604 SITE 3 AC2 10 HOH A 755 HOH A 806 SITE 1 AC3 6 ASP A 481 ASP A 484 ARG A 522 GLU A 525 SITE 2 AC3 6 GLU A 526 ASN A 529 SITE 1 AC4 6 PRO A 457 GLY A 458 GLU A 459 HIS A 494 SITE 2 AC4 6 HIS A 516 GOL A 602 SITE 1 AC5 4 ARG A 572 HOH A 793 HOH A 805 GLN B 571 SITE 1 AC6 2 ASP A 499 HOH A 758 SITE 1 AC7 10 HIS A 372 LEU A 373 SER A 375 GLY A 376 SITE 2 AC7 10 PRO A 377 ARG A 454 HOH A 754 HOH A 794 SITE 3 AC7 10 HOH A 813 HOH A 818 SITE 1 AC8 7 HIS B 372 GLY B 376 PRO B 377 ARG B 450 SITE 2 AC8 7 ARG B 454 HOH B 713 HOH B 722 CRYST1 74.084 76.900 128.137 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013498 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013004 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007804 0.00000