HEADER SIGNALING PROTEIN 04-MAR-13 4JGW TITLE THE CONFORMATION OF A DOCKING SITE FOR SH3 DOMAINS IS PRE-SELECTED IN TITLE 2 THE GUANINE NUCLEOTIDE EXCHANGE FACTOR RLF COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAL GUANINE NUCLEOTIDE DISSOCIATION STIMULATOR-LIKE 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 50-514; COMPND 5 SYNONYM: RALGDS-LIKE 2, RALGDS-LIKE FACTOR, RAS-ASSOCIATED PROTEIN COMPND 6 RAB2L; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RGL2, RAB2L, RLF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: CK600K; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX6P3 KEYWDS REM-DOMAIN, CDC25-HOMOLOGY DOMAIN, GUANINE NUCLEOTIDE EXCHANGE KEYWDS 2 FACTOR, SMALL G-PROTEIN BINDING, SH3 DOMAIN BINDING, SIGNALING KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.REHMANN,M.POPOVIC,A.J.JAKOBI REVDAT 3 08-NOV-23 4JGW 1 SEQADV REVDAT 2 15-NOV-17 4JGW 1 REMARK REVDAT 1 11-SEP-13 4JGW 0 JRNL AUTH M.POPOVIC,A.J.JAKOBI,M.RENSEN-DE LEEUW,H.REHMANN JRNL TITL THE GUANINE NUCLEOTIDE EXCHANGE FACTOR RLF INTERACTS WITH JRNL TITL 2 SH3 DOMAIN-CONTAINING PROTEINS VIA A BINDING SITE WITH A JRNL TITL 3 PRESELECTED CONFORMATION. JRNL REF J.STRUCT.BIOL. V. 183 312 2013 JRNL REFN ISSN 1047-8477 JRNL PMID 23891840 JRNL DOI 10.1016/J.JSB.2013.07.009 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 44339 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.253 REMARK 3 R VALUE (WORKING SET) : 0.252 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2335 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3228 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2870 REMARK 3 BIN FREE R VALUE SET COUNT : 169 REMARK 3 BIN FREE R VALUE : 0.3320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6117 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 182 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.10000 REMARK 3 B22 (A**2) : -0.63000 REMARK 3 B33 (A**2) : -0.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.59000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.338 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.254 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.190 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.633 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.920 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6235 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8477 ; 0.887 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 780 ; 3.954 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 271 ;28.736 ;22.657 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1012 ;14.799 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 64 ;13.089 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 989 ; 0.053 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4700 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3950 ; 0.259 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6338 ; 0.484 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2285 ; 0.524 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2139 ; 0.959 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4JGW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000078030. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97626 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46676 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 31.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 4.730 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.94 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.440 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3QXL, 2IJE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PROPANE, 0.2M NANO3, 12% REMARK 280 PEG 3350 , PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.81000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 42 REMARK 465 PRO A 43 REMARK 465 LEU A 44 REMARK 465 GLY A 45 REMARK 465 SER A 46 REMARK 465 PRO A 47 REMARK 465 ASN A 48 REMARK 465 SER A 49 REMARK 465 ALA A 195 REMARK 465 ALA A 196 REMARK 465 ARG A 197 REMARK 465 GLU A 198 REMARK 465 GLY A 199 REMARK 465 VAL A 200 REMARK 465 VAL A 201 REMARK 465 GLY A 202 REMARK 465 GLY A 203 REMARK 465 VAL A 215 REMARK 465 ASP A 216 REMARK 465 PRO A 217 REMARK 465 ARG A 218 REMARK 465 ALA A 219 REMARK 465 PRO A 220 REMARK 465 ASP A 221 REMARK 465 LEU A 222 REMARK 465 PRO A 223 REMARK 465 LYS A 224 REMARK 465 PRO A 225 REMARK 465 LEU A 226 REMARK 465 ALA A 227 REMARK 465 LEU A 228 REMARK 465 PRO A 229 REMARK 465 GLY A 230 REMARK 465 GLY A 273 REMARK 465 HIS A 274 REMARK 465 ARG A 275 REMARK 465 ASP A 276 REMARK 465 ARG A 277 REMARK 465 PRO A 278 REMARK 465 GLY A 279 REMARK 465 HIS A 280 REMARK 465 SER A 281 REMARK 465 HIS A 282 REMARK 465 SER A 389 REMARK 465 GLU A 390 REMARK 465 GLU A 391 REMARK 465 ASP A 392 REMARK 465 ASN A 393 REMARK 465 TYR A 394 REMARK 465 SER A 395 REMARK 465 GLN A 396 REMARK 465 GLN A 403 REMARK 465 GLU A 404 REMARK 465 VAL A 405 REMARK 465 LYS A 406 REMARK 465 PRO A 407 REMARK 465 GLN A 408 REMARK 465 PRO A 409 REMARK 465 PRO A 410 REMARK 465 VAL A 411 REMARK 465 GLU A 412 REMARK 465 PRO A 413 REMARK 465 HIS A 414 REMARK 465 SER A 415 REMARK 465 LYS A 416 REMARK 465 LYS A 417 REMARK 465 ALA A 418 REMARK 465 PRO A 419 REMARK 465 ARG A 420 REMARK 465 SER A 421 REMARK 465 GLY A 422 REMARK 465 PHE A 423 REMARK 465 ARG A 424 REMARK 465 GLY A 425 REMARK 465 GLY A 426 REMARK 465 PRO A 513 REMARK 465 GLY A 514 REMARK 465 GLY B 42 REMARK 465 PRO B 43 REMARK 465 LEU B 44 REMARK 465 GLY B 45 REMARK 465 SER B 46 REMARK 465 PRO B 47 REMARK 465 ASN B 48 REMARK 465 SER B 49 REMARK 465 GLU B 50 REMARK 465 GLU B 51 REMARK 465 GLU B 52 REMARK 465 ARG B 75 REMARK 465 PRO B 76 REMARK 465 LEU B 77 REMARK 465 ASP B 78 REMARK 465 PRO B 79 REMARK 465 LEU B 80 REMARK 465 ALA B 81 REMARK 465 ALA B 195 REMARK 465 ALA B 196 REMARK 465 ARG B 197 REMARK 465 GLU B 198 REMARK 465 GLY B 199 REMARK 465 VAL B 200 REMARK 465 VAL B 201 REMARK 465 GLY B 202 REMARK 465 GLY B 203 REMARK 465 ARG B 218 REMARK 465 ALA B 219 REMARK 465 PRO B 220 REMARK 465 ASP B 221 REMARK 465 LEU B 222 REMARK 465 PRO B 223 REMARK 465 LYS B 224 REMARK 465 PRO B 225 REMARK 465 LEU B 226 REMARK 465 ALA B 227 REMARK 465 LEU B 228 REMARK 465 PRO B 229 REMARK 465 GLY B 230 REMARK 465 ASP B 231 REMARK 465 SER B 232 REMARK 465 PRO B 233 REMARK 465 SER B 389 REMARK 465 GLU B 390 REMARK 465 GLU B 391 REMARK 465 ASP B 392 REMARK 465 ASN B 393 REMARK 465 TYR B 394 REMARK 465 SER B 395 REMARK 465 GLN B 396 REMARK 465 SER B 397 REMARK 465 ARG B 398 REMARK 465 GLN B 403 REMARK 465 GLU B 404 REMARK 465 VAL B 405 REMARK 465 LYS B 406 REMARK 465 PRO B 407 REMARK 465 GLN B 408 REMARK 465 PRO B 409 REMARK 465 PRO B 410 REMARK 465 VAL B 411 REMARK 465 GLU B 412 REMARK 465 PRO B 413 REMARK 465 HIS B 414 REMARK 465 SER B 415 REMARK 465 LYS B 416 REMARK 465 LYS B 417 REMARK 465 ALA B 418 REMARK 465 PRO B 419 REMARK 465 ARG B 420 REMARK 465 SER B 421 REMARK 465 GLY B 422 REMARK 465 PHE B 423 REMARK 465 ARG B 424 REMARK 465 GLY B 425 REMARK 465 GLY B 426 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 87 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 179 CG CD CE NZ REMARK 470 ASP A 231 CG OD1 OD2 REMARK 470 ARG A 288 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 316 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 317 CG CD OE1 OE2 REMARK 470 ARG A 379 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 398 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 399 CG CD OE1 OE2 REMARK 470 GLU B 177 CG CD OE1 OE2 REMARK 470 SER B 204 OG REMARK 470 ARG B 209 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 210 CG OD1 ND2 REMARK 470 VAL B 215 CG1 CG2 REMARK 470 ASP B 216 CG OD1 OD2 REMARK 470 PRO B 217 CG CD REMARK 470 ARG B 288 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 375 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 399 CG CD OE1 OE2 REMARK 470 LYS B 437 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 63 -66.48 -23.99 REMARK 500 ASP A 113 71.70 -152.73 REMARK 500 THR A 128 -158.89 -136.18 REMARK 500 ASP B 113 88.35 -158.87 REMARK 500 ASP B 238 3.80 -66.18 REMARK 500 PRO B 278 -53.94 -23.09 REMARK 500 LEU B 400 38.78 -94.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE IS BASED ON AND CDNA WAS OBTAINED FROM R. M. WOLTHUIS, REMARK 999 ET AL., RALGDS LIKE FACTOR (RLF) IS A NOVEL RAS AND RAP 1A- REMARK 999 ASSOCIATING PROTEIN, 13(2), 353 (1996). THE EXPERIMENTAL INFO OF REMARK 999 UNIPROT (Q61193 RGL2_MOUSE) SHOWS 147 H -> Y, 402 M -> T IN THIS REMARK 999 REFERENCE. DBREF 4JGW A 50 514 UNP Q61193 RGL2_MOUSE 50 514 DBREF 4JGW B 50 514 UNP Q61193 RGL2_MOUSE 50 514 SEQADV 4JGW GLY A 42 UNP Q61193 EXPRESSION TAG SEQADV 4JGW PRO A 43 UNP Q61193 EXPRESSION TAG SEQADV 4JGW LEU A 44 UNP Q61193 EXPRESSION TAG SEQADV 4JGW GLY A 45 UNP Q61193 EXPRESSION TAG SEQADV 4JGW SER A 46 UNP Q61193 EXPRESSION TAG SEQADV 4JGW PRO A 47 UNP Q61193 EXPRESSION TAG SEQADV 4JGW ASN A 48 UNP Q61193 EXPRESSION TAG SEQADV 4JGW SER A 49 UNP Q61193 EXPRESSION TAG SEQADV 4JGW TYR A 147 UNP Q61193 HIS 147 SEE REMARK 999 SEQADV 4JGW THR A 402 UNP Q61193 MET 402 SEE REMARK 999 SEQADV 4JGW GLY B 42 UNP Q61193 EXPRESSION TAG SEQADV 4JGW PRO B 43 UNP Q61193 EXPRESSION TAG SEQADV 4JGW LEU B 44 UNP Q61193 EXPRESSION TAG SEQADV 4JGW GLY B 45 UNP Q61193 EXPRESSION TAG SEQADV 4JGW SER B 46 UNP Q61193 EXPRESSION TAG SEQADV 4JGW PRO B 47 UNP Q61193 EXPRESSION TAG SEQADV 4JGW ASN B 48 UNP Q61193 EXPRESSION TAG SEQADV 4JGW SER B 49 UNP Q61193 EXPRESSION TAG SEQADV 4JGW TYR B 147 UNP Q61193 HIS 147 SEE REMARK 999 SEQADV 4JGW THR B 402 UNP Q61193 MET 402 SEE REMARK 999 SEQRES 1 A 473 GLY PRO LEU GLY SER PRO ASN SER GLU GLU GLU ALA SER SEQRES 2 A 473 VAL SER VAL TRP ASP GLU GLU GLU ASP GLY ALA THR PHE SEQRES 3 A 473 THR VAL THR SER ARG GLN TYR ARG PRO LEU ASP PRO LEU SEQRES 4 A 473 ALA PRO LEU PRO PRO PRO ARG SER SER ARG ARG LEU ARG SEQRES 5 A 473 ALA GLY THR LEU GLU ALA LEU VAL ARG HIS LEU LEU ASP SEQRES 6 A 473 ALA ARG THR ALA GLY ALA ASP MET MET PHE THR PRO ALA SEQRES 7 A 473 LEU LEU ALA THR HIS ARG ALA PHE THR SER THR PRO ALA SEQRES 8 A 473 LEU PHE GLY LEU VAL ALA ASP ARG LEU GLU ALA LEU GLU SEQRES 9 A 473 SER TYR PRO PRO GLY GLU LEU GLU ARG THR THR GLY VAL SEQRES 10 A 473 ALA ILE SER VAL LEU SER THR TRP LEU ALA SER HIS PRO SEQRES 11 A 473 GLU ASP PHE GLY SER GLU VAL LYS GLY GLN LEU ASP ARG SEQRES 12 A 473 LEU GLU SER PHE LEU LEU ARG THR GLY TYR ALA ALA ARG SEQRES 13 A 473 GLU GLY VAL VAL GLY GLY SER ALA ASP LEU ILE ARG ASN SEQRES 14 A 473 LEU ARG ALA ARG VAL ASP PRO ARG ALA PRO ASP LEU PRO SEQRES 15 A 473 LYS PRO LEU ALA LEU PRO GLY ASP SER PRO ALA ASP PRO SEQRES 16 A 473 THR ASP VAL LEU VAL PHE LEU ALA ASP HIS LEU ALA GLU SEQRES 17 A 473 GLN LEU THR LEU LEU ASP ALA GLU LEU PHE LEU ASN LEU SEQRES 18 A 473 ILE PRO SER GLN CYS LEU GLY GLY LEU TRP GLY HIS ARG SEQRES 19 A 473 ASP ARG PRO GLY HIS SER HIS LEU CYS PRO SER VAL ARG SEQRES 20 A 473 ALA THR VAL THR GLN PHE ASN LYS VAL ALA GLY ALA VAL SEQRES 21 A 473 VAL SER SER VAL LEU GLY ALA THR SER ILE GLY GLU GLY SEQRES 22 A 473 PRO ARG GLU VAL THR VAL ARG PRO LEU ARG PRO PRO GLN SEQRES 23 A 473 ARG ALA ARG LEU LEU GLU LYS TRP ILE ARG VAL ALA GLU SEQRES 24 A 473 GLU CYS ARG LEU LEU ARG ASN PHE SER SER VAL TYR ALA SEQRES 25 A 473 VAL VAL SER ALA LEU GLN SER SER PRO ILE HIS ARG LEU SEQRES 26 A 473 ARG ALA ALA TRP GLY GLU THR THR ARG ASP SER LEU ARG SEQRES 27 A 473 VAL PHE SER SER LEU CYS GLN ILE PHE SER GLU GLU ASP SEQRES 28 A 473 ASN TYR SER GLN SER ARG GLU LEU LEU THR GLN GLU VAL SEQRES 29 A 473 LYS PRO GLN PRO PRO VAL GLU PRO HIS SER LYS LYS ALA SEQRES 30 A 473 PRO ARG SER GLY PHE ARG GLY GLY GLY VAL VAL PRO TYR SEQRES 31 A 473 LEU GLY THR PHE LEU LYS ASP LEU VAL MET LEU ASP ALA SEQRES 32 A 473 ALA SER LYS ASP GLU LEU GLU ASN GLY TYR ILE ASN PHE SEQRES 33 A 473 ASP LYS ARG ARG LYS GLU PHE ALA ILE LEU SER GLU LEU SEQRES 34 A 473 LEU ARG LEU GLN LYS GLU CYS ARG GLY TYR ASP LEU ARG SEQRES 35 A 473 PRO ASN SER ASP ILE GLN GLN TRP LEU GLN GLY LEU GLN SEQRES 36 A 473 PRO LEU THR GLU ALA GLN SER HIS ARG VAL SER CYS GLU SEQRES 37 A 473 VAL GLU PRO PRO GLY SEQRES 1 B 473 GLY PRO LEU GLY SER PRO ASN SER GLU GLU GLU ALA SER SEQRES 2 B 473 VAL SER VAL TRP ASP GLU GLU GLU ASP GLY ALA THR PHE SEQRES 3 B 473 THR VAL THR SER ARG GLN TYR ARG PRO LEU ASP PRO LEU SEQRES 4 B 473 ALA PRO LEU PRO PRO PRO ARG SER SER ARG ARG LEU ARG SEQRES 5 B 473 ALA GLY THR LEU GLU ALA LEU VAL ARG HIS LEU LEU ASP SEQRES 6 B 473 ALA ARG THR ALA GLY ALA ASP MET MET PHE THR PRO ALA SEQRES 7 B 473 LEU LEU ALA THR HIS ARG ALA PHE THR SER THR PRO ALA SEQRES 8 B 473 LEU PHE GLY LEU VAL ALA ASP ARG LEU GLU ALA LEU GLU SEQRES 9 B 473 SER TYR PRO PRO GLY GLU LEU GLU ARG THR THR GLY VAL SEQRES 10 B 473 ALA ILE SER VAL LEU SER THR TRP LEU ALA SER HIS PRO SEQRES 11 B 473 GLU ASP PHE GLY SER GLU VAL LYS GLY GLN LEU ASP ARG SEQRES 12 B 473 LEU GLU SER PHE LEU LEU ARG THR GLY TYR ALA ALA ARG SEQRES 13 B 473 GLU GLY VAL VAL GLY GLY SER ALA ASP LEU ILE ARG ASN SEQRES 14 B 473 LEU ARG ALA ARG VAL ASP PRO ARG ALA PRO ASP LEU PRO SEQRES 15 B 473 LYS PRO LEU ALA LEU PRO GLY ASP SER PRO ALA ASP PRO SEQRES 16 B 473 THR ASP VAL LEU VAL PHE LEU ALA ASP HIS LEU ALA GLU SEQRES 17 B 473 GLN LEU THR LEU LEU ASP ALA GLU LEU PHE LEU ASN LEU SEQRES 18 B 473 ILE PRO SER GLN CYS LEU GLY GLY LEU TRP GLY HIS ARG SEQRES 19 B 473 ASP ARG PRO GLY HIS SER HIS LEU CYS PRO SER VAL ARG SEQRES 20 B 473 ALA THR VAL THR GLN PHE ASN LYS VAL ALA GLY ALA VAL SEQRES 21 B 473 VAL SER SER VAL LEU GLY ALA THR SER ILE GLY GLU GLY SEQRES 22 B 473 PRO ARG GLU VAL THR VAL ARG PRO LEU ARG PRO PRO GLN SEQRES 23 B 473 ARG ALA ARG LEU LEU GLU LYS TRP ILE ARG VAL ALA GLU SEQRES 24 B 473 GLU CYS ARG LEU LEU ARG ASN PHE SER SER VAL TYR ALA SEQRES 25 B 473 VAL VAL SER ALA LEU GLN SER SER PRO ILE HIS ARG LEU SEQRES 26 B 473 ARG ALA ALA TRP GLY GLU THR THR ARG ASP SER LEU ARG SEQRES 27 B 473 VAL PHE SER SER LEU CYS GLN ILE PHE SER GLU GLU ASP SEQRES 28 B 473 ASN TYR SER GLN SER ARG GLU LEU LEU THR GLN GLU VAL SEQRES 29 B 473 LYS PRO GLN PRO PRO VAL GLU PRO HIS SER LYS LYS ALA SEQRES 30 B 473 PRO ARG SER GLY PHE ARG GLY GLY GLY VAL VAL PRO TYR SEQRES 31 B 473 LEU GLY THR PHE LEU LYS ASP LEU VAL MET LEU ASP ALA SEQRES 32 B 473 ALA SER LYS ASP GLU LEU GLU ASN GLY TYR ILE ASN PHE SEQRES 33 B 473 ASP LYS ARG ARG LYS GLU PHE ALA ILE LEU SER GLU LEU SEQRES 34 B 473 LEU ARG LEU GLN LYS GLU CYS ARG GLY TYR ASP LEU ARG SEQRES 35 B 473 PRO ASN SER ASP ILE GLN GLN TRP LEU GLN GLY LEU GLN SEQRES 36 B 473 PRO LEU THR GLU ALA GLN SER HIS ARG VAL SER CYS GLU SEQRES 37 B 473 VAL GLU PRO PRO GLY FORMUL 3 HOH *182(H2 O) HELIX 1 1 THR A 96 LEU A 105 1 10 HELIX 2 2 ARG A 108 ASP A 113 1 6 HELIX 3 3 MET A 115 HIS A 124 1 10 HELIX 4 4 ARG A 125 PHE A 127 5 3 HELIX 5 5 SER A 129 ALA A 143 1 15 HELIX 6 6 PRO A 148 HIS A 170 1 23 HELIX 7 7 PRO A 171 PHE A 174 5 4 HELIX 8 8 VAL A 178 GLY A 193 1 16 HELIX 9 9 ALA A 205 ARG A 214 1 10 HELIX 10 10 ASP A 235 PHE A 242 5 8 HELIX 11 11 LEU A 243 ASN A 261 1 19 HELIX 12 12 ILE A 263 LEU A 268 5 6 HELIX 13 13 CYS A 284 LEU A 306 1 23 HELIX 14 14 ARG A 324 LEU A 345 1 22 HELIX 15 15 ASN A 347 SER A 360 1 14 HELIX 16 16 SER A 360 ARG A 365 1 6 HELIX 17 17 LEU A 366 GLU A 372 1 7 HELIX 18 18 THR A 374 GLN A 386 1 13 HELIX 19 19 LEU A 432 SER A 446 1 15 HELIX 20 20 PHE A 457 ARG A 478 1 22 HELIX 21 21 ASN A 485 LEU A 495 1 11 HELIX 22 22 THR A 499 GLU A 511 1 13 HELIX 23 23 THR B 96 LEU B 105 1 10 HELIX 24 24 ARG B 108 ASP B 113 1 6 HELIX 25 25 MET B 115 HIS B 124 1 10 HELIX 26 26 ARG B 125 PHE B 127 5 3 HELIX 27 27 SER B 129 ALA B 143 1 15 HELIX 28 28 PRO B 148 HIS B 170 1 23 HELIX 29 29 PRO B 171 PHE B 174 5 4 HELIX 30 30 GLY B 175 GLU B 177 5 3 HELIX 31 31 VAL B 178 GLY B 193 1 16 HELIX 32 32 ALA B 205 ASP B 216 1 12 HELIX 33 33 ASP B 235 PHE B 242 5 8 HELIX 34 34 LEU B 243 ASN B 261 1 19 HELIX 35 35 ILE B 263 CYS B 267 5 5 HELIX 36 36 LEU B 268 GLY B 273 1 6 HELIX 37 37 CYS B 284 LEU B 306 1 23 HELIX 38 38 ARG B 324 LEU B 345 1 22 HELIX 39 39 ASN B 347 SER B 360 1 14 HELIX 40 40 SER B 360 ARG B 365 1 6 HELIX 41 41 LEU B 366 GLU B 372 1 7 HELIX 42 42 THR B 374 GLN B 386 1 13 HELIX 43 43 TYR B 431 SER B 446 1 16 HELIX 44 44 PHE B 457 ARG B 478 1 22 HELIX 45 45 ASN B 485 GLY B 494 1 10 HELIX 46 46 THR B 499 GLU B 511 1 13 SHEET 1 A 4 GLU A 52 GLU A 62 0 SHEET 2 A 4 ALA A 65 TYR A 74 -1 O GLN A 73 N ALA A 53 SHEET 3 A 4 ARG A 87 GLY A 95 -1 O ALA A 94 N THR A 66 SHEET 4 A 4 ILE A 455 ASN A 456 -1 O ILE A 455 N GLY A 95 SHEET 1 B 2 ALA A 308 SER A 310 0 SHEET 2 B 2 VAL A 318 VAL A 320 -1 O THR A 319 N THR A 309 SHEET 1 C 4 SER B 54 GLU B 62 0 SHEET 2 C 4 ALA B 65 GLN B 73 -1 O PHE B 67 N GLU B 60 SHEET 3 C 4 ARG B 87 GLY B 95 -1 O ARG B 87 N ARG B 72 SHEET 4 C 4 ILE B 455 ASN B 456 -1 O ILE B 455 N GLY B 95 SHEET 1 D 2 ALA B 308 SER B 310 0 SHEET 2 D 2 VAL B 318 VAL B 320 -1 O THR B 319 N THR B 309 CRYST1 70.930 75.620 101.330 90.00 98.15 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014098 0.000000 0.002018 0.00000 SCALE2 0.000000 0.013224 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009969 0.00000