HEADER IMMUNE SYSTEM 04-MAR-13 4JHA TITLE CRYSTAL STRUCTURE OF RSV-NEUTRALIZING HUMAN ANTIBODY D25 COMPND MOL_ID: 1; COMPND 2 MOLECULE: D25 ANTIGEN-BINDING FRAGMENT HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: D25 LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PVRC8400; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PVRC8400 KEYWDS IMMUNOGLOBULIN, IG, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.S.MCLELLAN,M.CHEN,S.LEUNG,K.W.GRAEPEL,X.DU,Y.YANG,T.ZHOU,U.BAXA, AUTHOR 2 E.YASUDA,T.BEAUMONT,A.KUMAR,K.MODJARRAD,Z.ZHENG,M.ZHAO,N.XIA, AUTHOR 3 P.D.KWONG,B.S.GRAHAM REVDAT 4 16-OCT-24 4JHA 1 REMARK REVDAT 3 20-SEP-23 4JHA 1 REMARK REVDAT 2 12-JUN-13 4JHA 1 JRNL REVDAT 1 01-MAY-13 4JHA 0 JRNL AUTH J.S.MCLELLAN,M.CHEN,S.LEUNG,K.W.GRAEPEL,X.DU,Y.YANG,T.ZHOU, JRNL AUTH 2 U.BAXA,E.YASUDA,T.BEAUMONT,A.KUMAR,K.MODJARRAD,Z.ZHENG, JRNL AUTH 3 M.ZHAO,N.XIA,P.D.KWONG,B.S.GRAHAM JRNL TITL STRUCTURE OF RSV FUSION GLYCOPROTEIN TRIMER BOUND TO A JRNL TITL 2 PREFUSION-SPECIFIC NEUTRALIZING ANTIBODY. JRNL REF SCIENCE V. 340 1113 2013 JRNL REFN ISSN 0036-8075 JRNL PMID 23618766 JRNL DOI 10.1126/SCIENCE.1234914 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 63360 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.241 REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 3211 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.4047 - 4.5497 0.99 2896 172 0.2529 0.2429 REMARK 3 2 4.5497 - 3.6124 1.00 2763 149 0.2116 0.2395 REMARK 3 3 3.6124 - 3.1561 1.00 2730 153 0.2357 0.2400 REMARK 3 4 3.1561 - 2.8677 1.00 2678 166 0.2404 0.2997 REMARK 3 5 2.8677 - 2.6622 1.00 2713 125 0.2464 0.2407 REMARK 3 6 2.6622 - 2.5053 1.00 2671 150 0.2485 0.2569 REMARK 3 7 2.5053 - 2.3799 1.00 2682 133 0.2598 0.2795 REMARK 3 8 2.3799 - 2.2763 1.00 2652 142 0.2416 0.2398 REMARK 3 9 2.2763 - 2.1887 1.00 2655 143 0.2347 0.2532 REMARK 3 10 2.1887 - 2.1131 1.00 2642 149 0.2350 0.2495 REMARK 3 11 2.1131 - 2.0471 1.00 2665 132 0.2383 0.2590 REMARK 3 12 2.0471 - 1.9886 1.00 2653 128 0.2361 0.2357 REMARK 3 13 1.9886 - 1.9362 1.00 2649 133 0.2491 0.2911 REMARK 3 14 1.9362 - 1.8890 1.00 2653 121 0.2441 0.2663 REMARK 3 15 1.8890 - 1.8460 1.00 2619 139 0.2409 0.2619 REMARK 3 16 1.8460 - 1.8068 1.00 2634 135 0.2361 0.2286 REMARK 3 17 1.8068 - 1.7706 1.00 2628 147 0.2410 0.2753 REMARK 3 18 1.7706 - 1.7372 1.00 2603 150 0.2428 0.2830 REMARK 3 19 1.7372 - 1.7062 0.98 2581 136 0.2608 0.2887 REMARK 3 20 1.7062 - 1.6773 0.96 2540 128 0.2795 0.2812 REMARK 3 21 1.6773 - 1.6502 0.93 2421 134 0.2729 0.2696 REMARK 3 22 1.6502 - 1.6248 0.88 2324 102 0.2806 0.2716 REMARK 3 23 1.6248 - 1.6009 0.81 2097 144 0.2938 0.3149 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3387 REMARK 3 ANGLE : 1.197 4617 REMARK 3 CHIRALITY : 0.087 535 REMARK 3 PLANARITY : 0.006 591 REMARK 3 DIHEDRAL : 12.590 1211 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN H AND RESID 1:114 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.3886 28.7258 -14.7487 REMARK 3 T TENSOR REMARK 3 T11: 0.1541 T22: 0.1596 REMARK 3 T33: 0.1402 T12: -0.0308 REMARK 3 T13: 0.0185 T23: -0.0259 REMARK 3 L TENSOR REMARK 3 L11: 2.9133 L22: 1.4215 REMARK 3 L33: 1.0502 L12: 0.0418 REMARK 3 L13: -0.2162 L23: -0.2186 REMARK 3 S TENSOR REMARK 3 S11: 0.0098 S12: 0.0710 S13: 0.0608 REMARK 3 S21: 0.1129 S22: 0.0029 S23: 0.1368 REMARK 3 S31: 0.0499 S32: -0.0586 S33: 0.0256 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN H AND RESID 115:213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.3074 26.0298 4.1949 REMARK 3 T TENSOR REMARK 3 T11: 1.4204 T22: 0.5674 REMARK 3 T33: 0.7942 T12: 0.1542 REMARK 3 T13: -0.6979 T23: -0.1864 REMARK 3 L TENSOR REMARK 3 L11: 1.3180 L22: 1.3105 REMARK 3 L33: 2.5945 L12: 0.7405 REMARK 3 L13: 1.2015 L23: 0.5723 REMARK 3 S TENSOR REMARK 3 S11: 0.0542 S12: -0.7264 S13: 0.1289 REMARK 3 S21: 2.4829 S22: 0.3656 S23: -2.0345 REMARK 3 S31: 0.6133 S32: 0.2618 S33: 0.2026 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN L AND RESID 1:114 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8114 50.2208 -10.4110 REMARK 3 T TENSOR REMARK 3 T11: 0.1813 T22: 0.1423 REMARK 3 T33: 0.1479 T12: -0.0064 REMARK 3 T13: 0.0214 T23: -0.0258 REMARK 3 L TENSOR REMARK 3 L11: 4.5287 L22: 4.4303 REMARK 3 L33: 1.9053 L12: 1.8589 REMARK 3 L13: 1.5675 L23: 1.3672 REMARK 3 S TENSOR REMARK 3 S11: -0.0104 S12: -0.2233 S13: 0.1106 REMARK 3 S21: 0.2077 S22: -0.0296 S23: 0.0100 REMARK 3 S31: -0.1982 S32: -0.0635 S33: 0.0529 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN L AND RESID 115:211 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.4607 35.1373 -0.0870 REMARK 3 T TENSOR REMARK 3 T11: 0.8419 T22: 0.5745 REMARK 3 T33: 1.2789 T12: 0.0743 REMARK 3 T13: -0.3718 T23: -0.1269 REMARK 3 L TENSOR REMARK 3 L11: 3.7012 L22: 0.3302 REMARK 3 L33: 1.1445 L12: -1.8591 REMARK 3 L13: 1.7113 L23: -0.4155 REMARK 3 S TENSOR REMARK 3 S11: -0.0006 S12: -0.0981 S13: 0.1010 REMARK 3 S21: 0.1422 S22: -0.0843 S23: -0.6291 REMARK 3 S31: 0.3961 S32: 0.5811 S33: 0.0111 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JHA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000078044. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI 220. ROSENBAUM-ROCK DOUBLE- REMARK 200 CRYSTAL MONOCHROMATOR: REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63455 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 11.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3GBM, 3IDX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% (W/V) PEG 4000, 0.1 M SODIUM REMARK 280 ACETATE PH 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.63633 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 93.27267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 69.95450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 116.59083 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 23.31817 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 46.63633 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 93.27267 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 116.59083 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 69.95450 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 23.31817 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH H 311 LIES ON A SPECIAL POSITION. REMARK 375 HOH H 396 LIES ON A SPECIAL POSITION. REMARK 375 HOH H 414 LIES ON A SPECIAL POSITION. REMARK 375 HOH L 303 LIES ON A SPECIAL POSITION. REMARK 375 HOH L 399 LIES ON A SPECIAL POSITION. REMARK 375 HOH L 402 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS H 214 REMARK 465 SER H 215 REMARK 465 CYS H 216 REMARK 465 ASP H 217 REMARK 465 LYS H 218 REMARK 465 GLY L 212 REMARK 465 GLU L 213 REMARK 465 CYS L 214 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN L 147 O HOH L 418 1.82 REMARK 500 O HOH H 391 O HOH H 426 1.83 REMARK 500 O HOH L 392 O HOH L 398 1.84 REMARK 500 O GLU L 161 O HOH L 408 1.89 REMARK 500 O HOH H 398 O HOH H 407 1.89 REMARK 500 O HOH L 352 O HOH L 377 1.90 REMARK 500 OG SER H 179 O HOH H 412 1.91 REMARK 500 O HOH L 358 O HOH L 367 1.94 REMARK 500 OG SER L 203 O HOH L 420 1.96 REMARK 500 O HOH H 405 O HOH H 439 2.01 REMARK 500 N THR H 165 O HOH H 434 2.03 REMARK 500 OE1 GLU L 187 O HOH L 427 2.05 REMARK 500 O HOH L 403 O HOH L 409 2.07 REMARK 500 O HOH L 385 O HOH L 400 2.08 REMARK 500 O HOH L 386 O HOH L 406 2.09 REMARK 500 NZ LYS L 183 O HOH L 378 2.15 REMARK 500 O HOH L 332 O HOH L 393 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR L 49 O PRO L 204 8565 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA H 97 -119.84 -79.44 REMARK 500 LEU H 98 -4.41 62.99 REMARK 500 LEU H 124 79.64 -110.56 REMARK 500 SER H 127 -168.59 -161.17 REMARK 500 SER H 130 67.79 -112.14 REMARK 500 VAL L 30 -115.77 54.61 REMARK 500 ALA L 51 -37.92 72.16 REMARK 500 SER L 77 89.10 -153.06 REMARK 500 ASP L 151 -104.41 55.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JHW RELATED DB: PDB DBREF 4JHA H 1 218 PDB 4JHA 4JHA 1 218 DBREF 4JHA L 1 214 PDB 4JHA 4JHA 1 214 SEQRES 1 H 231 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 231 PRO GLY SER SER VAL MET VAL SER CYS GLN ALA SER GLY SEQRES 3 H 231 GLY PRO LEU ARG ASN TYR ILE ILE ASN TRP LEU ARG GLN SEQRES 4 H 231 ALA PRO GLY GLN GLY PRO GLU TRP MET GLY GLY ILE ILE SEQRES 5 H 231 PRO VAL LEU GLY THR VAL HIS TYR ALA PRO LYS PHE GLN SEQRES 6 H 231 GLY ARG VAL THR ILE THR ALA ASP GLU SER THR ASP THR SEQRES 7 H 231 ALA TYR ILE HIS LEU ILE SER LEU ARG SER GLU ASP THR SEQRES 8 H 231 ALA MET TYR TYR CYS ALA THR GLU THR ALA LEU VAL VAL SEQRES 9 H 231 SER THR THR TYR LEU PRO HIS TYR PHE ASP ASN TRP GLY SEQRES 10 H 231 GLN GLY THR LEU VAL THR VAL SER SER ALA SER THR LYS SEQRES 11 H 231 GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SER SEQRES 12 H 231 THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS SEQRES 13 H 231 ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER SEQRES 14 H 231 GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL SEQRES 15 H 231 LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL VAL SEQRES 16 H 231 THR VAL PRO SER SER SER LEU GLY THR GLN THR TYR ILE SEQRES 17 H 231 CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP SEQRES 18 H 231 LYS LYS VAL GLU PRO LYS SER CYS ASP LYS SEQRES 1 L 214 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 214 ALA VAL GLY ASP ARG VAL THR ILE THR CYS GLN ALA SER SEQRES 3 L 214 GLN ASP ILE VAL ASN TYR LEU ASN TRP TYR GLN GLN LYS SEQRES 4 L 214 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR VAL ALA SER SEQRES 5 L 214 ASN LEU GLU THR GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 214 GLY SER GLY THR ASP PHE SER LEU THR ILE SER SER LEU SEQRES 7 L 214 GLN PRO GLU ASP VAL ALA THR TYR TYR CYS GLN GLN TYR SEQRES 8 L 214 ASP ASN LEU PRO LEU THR PHE GLY GLY GLY THR LYS VAL SEQRES 9 L 214 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 L 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 L 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 L 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 L 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 L 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 L 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 L 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 L 214 PHE ASN ARG GLY GLU CYS FORMUL 3 HOH *270(H2 O) HELIX 1 1 PRO H 28 ARG H 30 5 3 HELIX 2 2 PRO H 52A GLY H 55 5 4 HELIX 3 3 ARG H 83 THR H 87 5 5 HELIX 4 4 SER H 156 ALA H 158 5 3 HELIX 5 5 SER H 187 LEU H 189 5 3 HELIX 6 6 LYS H 201 ASN H 204 5 4 HELIX 7 7 GLN L 79 VAL L 83 5 5 HELIX 8 8 SER L 121 GLY L 128 1 8 HELIX 9 9 LYS L 183 GLU L 187 1 5 SHEET 1 A 4 GLN H 3 GLN H 6 0 SHEET 2 A 4 VAL H 18 SER H 25 -1 O GLN H 23 N VAL H 5 SHEET 3 A 4 THR H 77 LEU H 82 -1 O ALA H 78 N CYS H 22 SHEET 4 A 4 VAL H 67 ASP H 72 -1 N ASP H 72 O THR H 77 SHEET 1 B 6 GLU H 10 LYS H 12 0 SHEET 2 B 6 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 B 6 ALA H 88 THR H 96 -1 N TYR H 90 O THR H 107 SHEET 4 B 6 TYR H 32 GLN H 39 -1 N ASN H 35 O ALA H 93 SHEET 5 B 6 GLU H 46 ILE H 52 -1 O MET H 48 N TRP H 36 SHEET 6 B 6 THR H 56 TYR H 59 -1 O HIS H 58 N GLY H 50 SHEET 1 C 4 GLU H 10 LYS H 12 0 SHEET 2 C 4 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 C 4 ALA H 88 THR H 96 -1 N TYR H 90 O THR H 107 SHEET 4 C 4 ASN H 102 TRP H 103 -1 O ASN H 102 N THR H 94 SHEET 1 D 4 SER H 120 LEU H 124 0 SHEET 2 D 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 D 4 TYR H 176 PRO H 185 -1 O VAL H 184 N ALA H 136 SHEET 4 D 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 E 4 THR H 131 SER H 132 0 SHEET 2 E 4 THR H 135 TYR H 145 -1 O THR H 135 N SER H 132 SHEET 3 E 4 TYR H 176 PRO H 185 -1 O VAL H 184 N ALA H 136 SHEET 4 E 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 F 3 THR H 151 TRP H 154 0 SHEET 2 F 3 TYR H 194 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 F 3 THR H 205 VAL H 211 -1 O VAL H 207 N VAL H 198 SHEET 1 G 4 MET L 4 SER L 7 0 SHEET 2 G 4 VAL L 19 ALA L 25 -1 O GLN L 24 N THR L 5 SHEET 3 G 4 ASP L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 4 G 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 H 6 SER L 10 ALA L 14 0 SHEET 2 H 6 THR L 102 LYS L 107 1 O LYS L 107 N ALA L 13 SHEET 3 H 6 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 H 6 LEU L 33 GLN L 38 -1 N GLN L 38 O THR L 85 SHEET 5 H 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 H 6 ASN L 53 LEU L 54 -1 O ASN L 53 N TYR L 49 SHEET 1 I 4 SER L 10 ALA L 14 0 SHEET 2 I 4 THR L 102 LYS L 107 1 O LYS L 107 N ALA L 13 SHEET 3 I 4 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 I 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 J 4 SER L 114 PHE L 118 0 SHEET 2 J 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 J 4 TYR L 173 SER L 182 -1 O TYR L 173 N PHE L 139 SHEET 4 J 4 SER L 159 VAL L 163 -1 N SER L 162 O SER L 176 SHEET 1 K 4 ALA L 153 LEU L 154 0 SHEET 2 K 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 K 4 VAL L 191 THR L 197 -1 O ALA L 193 N LYS L 149 SHEET 4 K 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.05 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.04 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.05 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.03 CISPEP 1 GLY H 133 GLY H 134 0 2.38 CISPEP 2 PHE H 146 PRO H 147 0 -5.94 CISPEP 3 GLU H 148 PRO H 149 0 2.48 CISPEP 4 SER L 7 PRO L 8 0 -6.55 CISPEP 5 LEU L 94 PRO L 95 0 3.65 CISPEP 6 TYR L 140 PRO L 141 0 4.17 CRYST1 108.725 108.725 139.909 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009198 0.005310 0.000000 0.00000 SCALE2 0.000000 0.010620 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007148 0.00000