HEADER PLANT PROTEIN 05-MAR-13 4JHH TITLE CRYSTAL STRUCTURE OF MEDICAGO TRUNCATULA NODULIN 13 (MTN13) IN COMPLEX TITLE 2 WITH KINETIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MTN13 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MEDICAGO TRUNCATULA; SOURCE 3 ORGANISM_COMMON: BARREL MEDIC; SOURCE 4 ORGANISM_TAXID: 3880; SOURCE 5 GENE: MTN13; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET TOPO 151D KEYWDS PR-10 FOLD, NODULIN, NODULATION, LEGUME-BACTERIA SYMBIOSIS, NITROGEN KEYWDS 2 FIXATION, CYTOKININ BINDING, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.RUSZKOWSKI,M.SIKORSKI,M.JASKOLSKI REVDAT 3 20-SEP-23 4JHH 1 REMARK SEQADV LINK REVDAT 2 08-JAN-14 4JHH 1 JRNL REVDAT 1 04-DEC-13 4JHH 0 JRNL AUTH M.RUSZKOWSKI,K.SZPOTKOWSKI,M.SIKORSKI,M.JASKOLSKI JRNL TITL THE LANDSCAPE OF CYTOKININ BINDING BY A PLANT NODULIN. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 69 2365 2013 JRNL REFN ISSN 0907-4449 JRNL PMID 24311578 JRNL DOI 10.1107/S0907444913021975 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.FERNANDES,K.MICHALSKA,M.SIKORSKI,M.JASKOLSKI REMARK 1 TITL STRUCTURAL AND FUNCTIONAL ASPECTS OF PR-10 PROTEINS. REMARK 1 REF FEBS J. V. 280 1169 2013 REMARK 1 REFN ISSN 1742-464X REMARK 1 PMID 23289796 REMARK 1 DOI 10.1111/FEBS.12114 REMARK 1 REFERENCE 2 REMARK 1 AUTH H.FERNANDES,O.PASTERNAK,G.BUJACZ,A.BUJACZ,M.M.SIKORSKI, REMARK 1 AUTH 2 M.JASKOLSKI REMARK 1 TITL LUPINUS LUTEUS PATHOGENESIS-RELATED PROTEIN AS A RESERVOIR REMARK 1 TITL 2 FOR CYTOKININ. REMARK 1 REF J.MOL.BIOL. V. 378 1040 2008 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 18406424 REMARK 1 DOI 10.1016/J.JMB.2008.03.027 REMARK 1 REFERENCE 3 REMARK 1 AUTH H.FERNANDES,A.BUJACZ,G.BUJACZ,F.JELEN,M.JASINSKI, REMARK 1 AUTH 2 P.KACHLICKI,J.OTLEWSKI,M.M.SIKORSKI,M.JASKOLSKI REMARK 1 TITL CYTOKININ-INDUCED STRUCTURAL ADAPTABILITY OF A LUPINUS REMARK 1 TITL 2 LUTEUS PR-10 PROTEIN. REMARK 1 REF FEBS J. V. 276 1596 2009 REMARK 1 REFN ISSN 1742-464X REMARK 1 PMID 19220853 REMARK 1 DOI 10.1111/J.1742-4658.2009.06892.X REMARK 1 REFERENCE 4 REMARK 1 AUTH O.PASTERNAK,G.D.BUJACZ,Y.FUJIMOTO,Y.HASHIMOTO,F.JELEN, REMARK 1 AUTH 2 J.OTLEWSKI,M.M.SIKORSKI,M.JASKOLSKI REMARK 1 TITL CRYSTAL STRUCTURE OF VIGNA RADIATA CYTOKININ-SPECIFIC REMARK 1 TITL 2 BINDING PROTEIN IN COMPLEX WITH ZEATIN. REMARK 1 REF PLANT CELL V. 18 2622 2006 REMARK 1 REFN ISSN 1040-4651 REMARK 1 PMID 16998071 REMARK 1 DOI 10.1105/TPC.105.037119 REMARK 1 REFERENCE 5 REMARK 1 AUTH P.GAMAS,F.DE BILLY,G.TRUCHET REMARK 1 TITL SYMBIOSIS-SPECIFIC EXPRESSION OF TWO MEDICAGO TRUNCATULA REMARK 1 TITL 2 NODULIN GENES, MTN1 AND MTN13, ENCODING PRODUCTS HOMOLOGOUS REMARK 1 TITL 3 TO PLANT DEFENSE PROTEINS. REMARK 1 REF MOL.PLANT MICROBE INTERACT. V. 11 393 1998 REMARK 1 REFN ISSN 0894-0282 REMARK 1 PMID 9574507 REMARK 1 DOI 10.1094/MPMI.1998.11.5.393 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 16286 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.150 REMARK 3 FREE R VALUE TEST SET COUNT : 1002 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.2200 - 4.2000 1.00 2367 156 0.1618 0.1816 REMARK 3 2 4.2000 - 3.3400 1.00 2230 146 0.1480 0.1600 REMARK 3 3 3.3400 - 2.9100 1.00 2196 144 0.1881 0.2304 REMARK 3 4 2.9100 - 2.6500 1.00 2183 143 0.2249 0.2972 REMARK 3 5 2.6500 - 2.4600 1.00 2148 141 0.2281 0.2823 REMARK 3 6 2.4600 - 2.3100 1.00 2161 141 0.2447 0.2602 REMARK 3 7 2.3100 - 2.2000 0.94 1999 131 0.2679 0.3127 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.020 1347 REMARK 3 ANGLE : 1.725 1824 REMARK 3 CHIRALITY : 0.095 197 REMARK 3 PLANARITY : 0.009 234 REMARK 3 DIHEDRAL : 24.437 827 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID -3:34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.5520 12.5974 2.7216 REMARK 3 T TENSOR REMARK 3 T11: 0.3557 T22: 0.3337 REMARK 3 T33: 0.2924 T12: 0.0385 REMARK 3 T13: -0.0160 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 5.0743 L22: 3.4495 REMARK 3 L33: 2.7364 L12: -2.7427 REMARK 3 L13: 1.0678 L23: -0.2401 REMARK 3 S TENSOR REMARK 3 S11: -0.0119 S12: 0.3469 S13: 0.2622 REMARK 3 S21: -0.1709 S22: -0.1556 S23: 0.1588 REMARK 3 S31: -0.4801 S32: -0.4442 S33: 0.1521 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 35:53 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.6320 25.5571 4.8351 REMARK 3 T TENSOR REMARK 3 T11: 0.4683 T22: 0.3136 REMARK 3 T33: 0.3069 T12: 0.1623 REMARK 3 T13: -0.0872 T23: 0.0450 REMARK 3 L TENSOR REMARK 3 L11: 6.7274 L22: 5.4804 REMARK 3 L33: 4.5636 L12: -1.3856 REMARK 3 L13: -2.5120 L23: 3.4206 REMARK 3 S TENSOR REMARK 3 S11: 0.1528 S12: 0.1471 S13: 0.4284 REMARK 3 S21: -0.1911 S22: -0.1512 S23: -0.0163 REMARK 3 S31: -0.7924 S32: -0.4585 S33: -0.0639 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 54:84 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.1160 19.0901 3.4958 REMARK 3 T TENSOR REMARK 3 T11: 0.3194 T22: 0.3051 REMARK 3 T33: 0.2774 T12: 0.1027 REMARK 3 T13: -0.0142 T23: 0.0338 REMARK 3 L TENSOR REMARK 3 L11: 1.8384 L22: 4.0278 REMARK 3 L33: 2.5555 L12: 0.1010 REMARK 3 L13: -0.2543 L23: 1.1393 REMARK 3 S TENSOR REMARK 3 S11: -0.0826 S12: 0.0175 S13: 0.0264 REMARK 3 S21: -0.0346 S22: 0.1640 S23: 0.1399 REMARK 3 S31: -0.4264 S32: -0.2343 S33: -0.0233 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 85:106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.8379 11.0971 8.9256 REMARK 3 T TENSOR REMARK 3 T11: 0.3322 T22: 0.2777 REMARK 3 T33: 0.2675 T12: 0.0885 REMARK 3 T13: 0.0496 T23: 0.0333 REMARK 3 L TENSOR REMARK 3 L11: 8.7244 L22: 4.1879 REMARK 3 L33: 5.1177 L12: 1.9464 REMARK 3 L13: 3.2146 L23: 2.2491 REMARK 3 S TENSOR REMARK 3 S11: -0.1732 S12: -0.6154 S13: -0.2460 REMARK 3 S21: 0.3092 S22: 0.3155 S23: -0.1573 REMARK 3 S31: -0.2196 S32: 0.0653 S33: -0.1277 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESID 107:130 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.3189 5.0331 7.2144 REMARK 3 T TENSOR REMARK 3 T11: 0.2655 T22: 0.1855 REMARK 3 T33: 0.2751 T12: 0.0170 REMARK 3 T13: 0.0894 T23: -0.0441 REMARK 3 L TENSOR REMARK 3 L11: 8.6067 L22: 6.0651 REMARK 3 L33: 6.7260 L12: -0.3780 REMARK 3 L13: 3.3427 L23: -0.5995 REMARK 3 S TENSOR REMARK 3 S11: -0.3755 S12: -0.1991 S13: -0.2332 REMARK 3 S21: 0.2930 S22: 0.2056 S23: 0.0675 REMARK 3 S31: -0.4137 S32: -0.2454 S33: 0.1767 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESID 131:158 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.5291 13.7637 8.7697 REMARK 3 T TENSOR REMARK 3 T11: 0.3535 T22: 0.3877 REMARK 3 T33: 0.3763 T12: 0.0797 REMARK 3 T13: 0.0281 T23: -0.1057 REMARK 3 L TENSOR REMARK 3 L11: 9.4669 L22: 7.6197 REMARK 3 L33: 5.0283 L12: -3.1633 REMARK 3 L13: 1.9575 L23: -0.0227 REMARK 3 S TENSOR REMARK 3 S11: -0.4006 S12: -0.3176 S13: 0.2960 REMARK 3 S21: 0.7611 S22: 0.2695 S23: 0.4285 REMARK 3 S31: -0.3026 S32: -0.5750 S33: 0.2592 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGEN ATOMS WERE ADDED AT RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4JHH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000078051. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91801 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : FOCUSING MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16292 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 48.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.64700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.960 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3RWS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.85 M SODIUM MALONATE, 200 MM NACL, REMARK 280 50 MM TRIS-HCL, PROTEIN WAS INCUBATED OVERNIGHT WITH KINETIN REMARK 280 PRIOR TO CRYSTALLIZATION, PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.60467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.80233 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 75.60467 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.80233 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 75.60467 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 37.80233 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 75.60467 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 37.80233 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 37.80233 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 336 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 367 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 159 REMARK 465 LYS A 160 REMARK 465 ASP A 161 REMARK 465 SER A 162 REMARK 465 ASN A 163 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 62 43.78 -84.19 REMARK 500 GLU A 109 -19.53 105.52 REMARK 500 GLU A 110 177.52 62.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 203 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 59 O REMARK 620 2 GLY A 61 O 99.5 REMARK 620 3 HOH A 301 O 93.7 99.1 REMARK 620 4 HOH A 310 O 95.4 104.4 152.9 REMARK 620 5 HOH A 365 O 102.4 155.9 89.5 63.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE H35 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JHI RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MEDICAGO TRUNCATULA NODULIN 13 (MTN13) IN REMARK 900 COMPLEX WITH N6-BENZYLADENINE REMARK 900 RELATED ID: 4GY9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MEDICAGO TRUNCATULA NODULIN 13 (MTN13) IN REMARK 900 COMPLEX WITH N6-ISOPENTENYLADENINE (2IP) REMARK 900 RELATED ID: 1ICX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PATHOGENESIS-RELATED PROTEIN LLPR10.1A FROM REMARK 900 YELLOW LUPINE REMARK 900 RELATED ID: 2QIM RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PATHOGENESIS-RELATED PROTEIN LLPR-10.2B FROM REMARK 900 YELLOW LUPINE IN COMPLEX WITH CYTOKININ REMARK 900 RELATED ID: 3US7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PHYTOHORMONE BINDING PROTEIN FROM MEDICAGO REMARK 900 TRUNCATULA IN COMPLEX WITH GIBBERELLIC ACID (GA3) REMARK 900 RELATED ID: 4JHG RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MEDICAGO TRUNCATULA NODULIN 13 (MTN13) IN REMARK 900 COMPLEX WITH TRANS-ZEATIN DBREF 4JHH A 1 163 UNP P93330 P93330_MEDTR 1 163 SEQADV 4JHH ILE A -4 UNP P93330 EXPRESSION TAG SEQADV 4JHH ASP A -3 UNP P93330 EXPRESSION TAG SEQADV 4JHH PRO A -2 UNP P93330 EXPRESSION TAG SEQADV 4JHH PHE A -1 UNP P93330 EXPRESSION TAG SEQADV 4JHH THR A 0 UNP P93330 EXPRESSION TAG SEQRES 1 A 168 ILE ASP PRO PHE THR MET GLY VAL ILE THR SER GLU SER SEQRES 2 A 168 GLU TYR VAL SER SER LEU SER ALA GLU LYS LEU TYR ARG SEQRES 3 A 168 GLY ILE VAL GLU ASP GLY ASN ILE ILE TYR PRO LYS ALA SEQRES 4 A 168 LEU PRO ARG PHE ILE GLU LYS ALA GLU THR LEU GLU GLY SEQRES 5 A 168 ASP GLY GLY PRO GLY THR ILE LYS LYS LEU THR PHE VAL SEQRES 6 A 168 GLY ASP PHE GLY SER THR LYS GLN HIS ILE ASP MET VAL SEQRES 7 A 168 ASP ARG GLU ASN CYS ALA TYR THR TYR SER VAL TYR GLU SEQRES 8 A 168 GLY ILE ALA LEU SER ASP GLN PRO LEU GLU LYS ILE VAL SEQRES 9 A 168 PHE GLU PHE LYS LEU VAL PRO THR PRO GLU GLU GLY CYS SEQRES 10 A 168 ILE VAL LYS SER THR THR LYS TYR TYR THR LYS GLY ASP SEQRES 11 A 168 ASP ILE GLU LEU SER LYS ASP TYR LEU GLU ALA GLY ILE SEQRES 12 A 168 GLU ARG PHE GLU GLY PHE THR LYS ALA VAL GLU SER PHE SEQRES 13 A 168 LEU LEU ALA ASN PRO ASP TYR ASN LYS ASP SER ASN HET H35 A 201 16 HET MLI A 202 7 HET NA A 203 1 HETNAM H35 N-(FURAN-2-YLMETHYL)-7H-PURIN-6-AMINE HETNAM MLI MALONATE ION HETNAM NA SODIUM ION FORMUL 2 H35 C10 H9 N5 O FORMUL 3 MLI C3 H2 O4 2- FORMUL 4 NA NA 1+ FORMUL 5 HOH *94(H2 O) HELIX 1 1 SER A 15 GLU A 25 1 11 HELIX 2 2 ASP A 26 LEU A 35 1 10 HELIX 3 3 SER A 130 ASN A 155 1 26 SHEET 1 A 7 MET A 1 SER A 12 0 SHEET 2 A 7 CYS A 112 LYS A 123 -1 O VAL A 114 N TYR A 10 SHEET 3 A 7 LEU A 95 PRO A 106 -1 N GLU A 96 O TYR A 121 SHEET 4 A 7 ALA A 79 VAL A 84 -1 N TYR A 80 O PHE A 102 SHEET 5 A 7 SER A 65 ASP A 74 -1 N ASP A 71 O THR A 81 SHEET 6 A 7 ILE A 54 PHE A 59 -1 N LEU A 57 O THR A 66 SHEET 7 A 7 ILE A 39 GLU A 46 -1 N GLU A 43 O LYS A 56 LINK O PHE A 59 NA NA A 203 1555 1555 2.32 LINK O GLY A 61 NA NA A 203 1555 1555 2.34 LINK NA NA A 203 O HOH A 301 1555 1555 2.32 LINK NA NA A 203 O HOH A 310 1555 1555 2.71 LINK NA NA A 203 O HOH A 365 1555 1555 2.48 CISPEP 1 GLU A 110 GLY A 111 0 -20.84 SITE 1 AC1 11 GLY A 61 ASP A 62 THR A 66 GLN A 68 SITE 2 AC1 11 TYR A 82 VAL A 84 ILE A 98 PHE A 100 SITE 3 AC1 11 TYR A 133 GLY A 137 ARG A 140 SITE 1 AC2 5 GLY A 87 ILE A 88 ALA A 89 HOH A 319 SITE 2 AC2 5 HOH A 381 SITE 1 AC3 6 PHE A 59 GLY A 61 HOH A 301 HOH A 302 SITE 2 AC3 6 HOH A 310 HOH A 365 CRYST1 96.415 96.415 113.407 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010372 0.005988 0.000000 0.00000 SCALE2 0.000000 0.011976 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008818 0.00000