data_4JHI # _entry.id 4JHI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4JHI pdb_00004jhi 10.2210/pdb4jhi/pdb RCSB RCSB078052 ? ? WWPDB D_1000078052 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4JHH 'Crystal Structure of Medicago truncatula Nodulin 13 (MtN13) in complex with kinetin' unspecified PDB 4gy9 'Crystal Structure of Medicago truncatula Nodulin 13 (MtN13) in complex with N6-isopentenyladenine (2iP)' unspecified PDB 1icx 'CRYSTAL STRUCTURE OF PATHOGENESIS-RELATED PROTEIN LLPR10.1A FROM YELLOW LUPINE' unspecified PDB 2qim 'CRYSTAL STRUCTURE OF PATHOGENESIS-RELATED PROTEIN LLPR-10.2B FROM YELLOW LUPINE IN COMPLEX WITH CYTOKININ' unspecified PDB 3us7 'CRYSTAL STRUCTURE OF PHYTOHORMONE BINDING PROTEIN FROM MEDICAGO TRUNCATULA IN COMPLEX WITH GIBBERELLIC ACID (GA3)' unspecified PDB 4JHG 'Crystal Structure of Medicago truncatula Nodulin 13 (MtN13) in complex with trans-zeatin' unspecified # _pdbx_database_status.entry_id 4JHI _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-03-05 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ruszkowski, M.' 1 'Sikorski, M.' 2 'Jaskolski, M.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'The landscape of cytokinin binding by a plant nodulin.' 'Acta Crystallogr.,Sect.D' 69 2365 2380 2013 ABCRE6 DK 0907-4449 0766 ? 24311578 10.1107/S0907444913021975 1 'Structural and functional aspects of PR-10 proteins.' 'Febs J.' 280 1169 1199 2013 ? UK 1742-464X ? ? 23289796 10.1111/febs.12114 2 'Lupinus luteus pathogenesis-related protein as a reservoir for cytokinin.' J.Mol.Biol. 378 1040 1051 2008 JMOBAK UK 0022-2836 0070 ? 18406424 10.1016/j.jmb.2008.03.027 3 'Cytokinin-induced structural adaptability of a Lupinus luteus PR-10 protein.' 'Febs J.' 276 1596 1609 2009 ? UK 1742-464X ? ? 19220853 10.1111/j.1742-4658.2009.06892.x 4 'Crystal structure of Vigna radiata cytokinin-specific binding protein in complex with zeatin.' 'Plant Cell' 18 2622 2634 2006 PLCEEW US 1040-4651 2109 ? 16998071 10.1105/tpc.105.037119 5 ;Symbiosis-specific expression of two Medicago truncatula nodulin genes, MtN1 and MtN13, encoding products homologous to plant defense proteins. ; 'Mol.Plant Microbe Interact.' 11 393 403 1998 ? US 0894-0282 ? ? 9574507 10.1094/MPMI.1998.11.5.393 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ruszkowski, M.' 1 ? primary 'Szpotkowski, K.' 2 ? primary 'Sikorski, M.' 3 ? primary 'Jaskolski, M.' 4 ? 1 'Fernandes, H.' 5 ? 1 'Michalska, K.' 6 ? 1 'Sikorski, M.' 7 ? 1 'Jaskolski, M.' 8 ? 2 'Fernandes, H.' 9 ? 2 'Pasternak, O.' 10 ? 2 'Bujacz, G.' 11 ? 2 'Bujacz, A.' 12 ? 2 'Sikorski, M.M.' 13 ? 2 'Jaskolski, M.' 14 ? 3 'Fernandes, H.' 15 ? 3 'Bujacz, A.' 16 ? 3 'Bujacz, G.' 17 ? 3 'Jelen, F.' 18 ? 3 'Jasinski, M.' 19 ? 3 'Kachlicki, P.' 20 ? 3 'Otlewski, J.' 21 ? 3 'Sikorski, M.M.' 22 ? 3 'Jaskolski, M.' 23 ? 4 'Pasternak, O.' 24 ? 4 'Bujacz, G.D.' 25 ? 4 'Fujimoto, Y.' 26 ? 4 'Hashimoto, Y.' 27 ? 4 'Jelen, F.' 28 ? 4 'Otlewski, J.' 29 ? 4 'Sikorski, M.M.' 30 ? 4 'Jaskolski, M.' 31 ? 5 'Gamas, P.' 32 ? 5 'de Billy, F.' 33 ? 5 'Truchet, G.' 34 ? # _cell.length_a 96.086 _cell.length_b 96.086 _cell.length_c 113.584 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 4JHI _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 62 2 2' _symmetry.entry_id 4JHI _symmetry.Int_Tables_number 180 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'MtN13 protein' 18659.861 1 ? ? ? ? 2 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 3 non-polymer syn N-BENZYL-9H-PURIN-6-AMINE 225.249 1 ? ? ? ? 4 water nat water 18.015 25 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;DPFTMGVITSESEYVSSLSAEKLYRGIVEDGNIIYPKALPRFIEKAETLEGDGGPGTIKKLTFVGDFGSTKQHIDMVDRE NCAYTYSVYEGIALSDQPLEKIVFEFKLVPTPEEGCIVKSTTKYYTKGDDIELSKDYLEAGIERFEGFTKAVESFLLANP DYNKDSN ; _entity_poly.pdbx_seq_one_letter_code_can ;DPFTMGVITSESEYVSSLSAEKLYRGIVEDGNIIYPKALPRFIEKAETLEGDGGPGTIKKLTFVGDFGSTKQHIDMVDRE NCAYTYSVYEGIALSDQPLEKIVFEFKLVPTPEEGCIVKSTTKYYTKGDDIELSKDYLEAGIERFEGFTKAVESFLLANP DYNKDSN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 PRO n 1 3 PHE n 1 4 THR n 1 5 MET n 1 6 GLY n 1 7 VAL n 1 8 ILE n 1 9 THR n 1 10 SER n 1 11 GLU n 1 12 SER n 1 13 GLU n 1 14 TYR n 1 15 VAL n 1 16 SER n 1 17 SER n 1 18 LEU n 1 19 SER n 1 20 ALA n 1 21 GLU n 1 22 LYS n 1 23 LEU n 1 24 TYR n 1 25 ARG n 1 26 GLY n 1 27 ILE n 1 28 VAL n 1 29 GLU n 1 30 ASP n 1 31 GLY n 1 32 ASN n 1 33 ILE n 1 34 ILE n 1 35 TYR n 1 36 PRO n 1 37 LYS n 1 38 ALA n 1 39 LEU n 1 40 PRO n 1 41 ARG n 1 42 PHE n 1 43 ILE n 1 44 GLU n 1 45 LYS n 1 46 ALA n 1 47 GLU n 1 48 THR n 1 49 LEU n 1 50 GLU n 1 51 GLY n 1 52 ASP n 1 53 GLY n 1 54 GLY n 1 55 PRO n 1 56 GLY n 1 57 THR n 1 58 ILE n 1 59 LYS n 1 60 LYS n 1 61 LEU n 1 62 THR n 1 63 PHE n 1 64 VAL n 1 65 GLY n 1 66 ASP n 1 67 PHE n 1 68 GLY n 1 69 SER n 1 70 THR n 1 71 LYS n 1 72 GLN n 1 73 HIS n 1 74 ILE n 1 75 ASP n 1 76 MET n 1 77 VAL n 1 78 ASP n 1 79 ARG n 1 80 GLU n 1 81 ASN n 1 82 CYS n 1 83 ALA n 1 84 TYR n 1 85 THR n 1 86 TYR n 1 87 SER n 1 88 VAL n 1 89 TYR n 1 90 GLU n 1 91 GLY n 1 92 ILE n 1 93 ALA n 1 94 LEU n 1 95 SER n 1 96 ASP n 1 97 GLN n 1 98 PRO n 1 99 LEU n 1 100 GLU n 1 101 LYS n 1 102 ILE n 1 103 VAL n 1 104 PHE n 1 105 GLU n 1 106 PHE n 1 107 LYS n 1 108 LEU n 1 109 VAL n 1 110 PRO n 1 111 THR n 1 112 PRO n 1 113 GLU n 1 114 GLU n 1 115 GLY n 1 116 CYS n 1 117 ILE n 1 118 VAL n 1 119 LYS n 1 120 SER n 1 121 THR n 1 122 THR n 1 123 LYS n 1 124 TYR n 1 125 TYR n 1 126 THR n 1 127 LYS n 1 128 GLY n 1 129 ASP n 1 130 ASP n 1 131 ILE n 1 132 GLU n 1 133 LEU n 1 134 SER n 1 135 LYS n 1 136 ASP n 1 137 TYR n 1 138 LEU n 1 139 GLU n 1 140 ALA n 1 141 GLY n 1 142 ILE n 1 143 GLU n 1 144 ARG n 1 145 PHE n 1 146 GLU n 1 147 GLY n 1 148 PHE n 1 149 THR n 1 150 LYS n 1 151 ALA n 1 152 VAL n 1 153 GLU n 1 154 SER n 1 155 PHE n 1 156 LEU n 1 157 LEU n 1 158 ALA n 1 159 ASN n 1 160 PRO n 1 161 ASP n 1 162 TYR n 1 163 ASN n 1 164 LYS n 1 165 ASP n 1 166 SER n 1 167 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Barrel medic' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene MtN13 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Medicago truncatula' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 3880 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 Magic' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'PET TOPO 151D' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code P93330_MEDTR _struct_ref.pdbx_db_accession P93330 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MGVITSESEYVSSLSAEKLYRGIVEDGNIIYPKALPRFIEKAETLEGDGGPGTIKKLTFVGDFGSTKQHIDMVDRENCAY TYSVYEGIALSDQPLEKIVFEFKLVPTPEEGCIVKSTTKYYTKGDDIELSKDYLEAGIERFEGFTKAVESFLLANPDYNK DSN ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4JHI _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 167 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P93330 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 163 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 163 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4JHI ASP A 1 ? UNP P93330 ? ? 'expression tag' -3 1 1 4JHI PRO A 2 ? UNP P93330 ? ? 'expression tag' -2 2 1 4JHI PHE A 3 ? UNP P93330 ? ? 'expression tag' -1 3 1 4JHI THR A 4 ? UNP P93330 ? ? 'expression tag' 0 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EMU non-polymer . N-BENZYL-9H-PURIN-6-AMINE BENZYLAMINOPURINE 'C12 H11 N5' 225.249 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4JHI _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 4.06 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 69.67 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;1.7 M SODIUM MALONATE, 200 mM NaCl, 50 mM Tris-HCl, protein was incubated overnight with N6-benzylopurine prior to crystallization, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2012-12-13 _diffrn_detector.details 'Sagitally focusing multilayer mirror' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Bent Si (111) crystal, horizontally focusing' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.04172 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'MAX II BEAMLINE I911-2' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.04172 _diffrn_source.pdbx_synchrotron_site 'MAX II' _diffrn_source.pdbx_synchrotron_beamline I911-2 # _reflns.entry_id 4JHI _reflns.d_resolution_high 2.60 _reflns.number_obs 10018 _reflns.pdbx_Rmerge_I_obs 0.128 _reflns.pdbx_netI_over_sigmaI 17.000 _reflns.percent_possible_obs 99.8 _reflns.B_iso_Wilson_estimate 39.8 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 46.90 _reflns.number_all 10040 _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy 10.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.60 2.76 16785 ? 1568 0.684 4.33 ? ? ? ? ? 99.6 1 1 2.76 2.95 15779 ? 1461 0.434 6.64 ? ? ? ? ? 99.9 2 1 2.95 3.18 14995 ? 1396 0.266 9.90 ? ? ? ? ? 100 3 1 3.18 3.48 13770 ? 1292 0.158 15.99 ? ? ? ? ? 100 4 1 3.48 3.89 12309 ? 1162 0.106 21.88 ? ? ? ? ? 100 5 1 3.89 4.49 11074 ? 1061 0.076 28.03 ? ? ? ? ? 100 6 1 4.49 5.49 9188 ? 901 0.065 31.12 ? ? ? ? ? 99.9 7 1 5.49 7.71 7206 ? 726 0.082 26.11 ? ? ? ? ? 99.7 8 1 7.71 46.90 3908 ? 451 0.047 38.05 ? ? ? ? ? 97.8 9 1 # _refine.entry_id 4JHI _refine.ls_d_res_high 2.60 _refine.ls_d_res_low 46.90 _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.8 _refine.ls_number_reflns_obs 10017 _refine.ls_number_reflns_all 10040 _refine.pdbx_ls_cross_valid_method R-free _refine.pdbx_R_Free_selection_details Random _refine.details ? _refine.ls_R_factor_all 0.1747 _refine.ls_R_factor_obs 0.1747 _refine.ls_R_factor_R_work 0.1704 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2254 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 8.0100 _refine.ls_number_reflns_R_free 802 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 39.4 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.2500 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB entry 3rws' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 115.130 _refine.B_iso_min 8.660 _refine.pdbx_overall_phase_error 21.1400 _refine.occupancy_max 1.000 _refine.occupancy_min 0.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1274 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 18 _refine_hist.number_atoms_solvent 25 _refine_hist.number_atoms_total 1317 _refine_hist.d_res_high 2.60 _refine_hist.d_res_low 46.90 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 1323 0.015 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 1787 1.614 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 194 0.095 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 229 0.007 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 487 17.302 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 2.60 2.76 6 100 1487 . 0.2425 0.3404 . 130 . 1617 . . 'X-RAY DIFFRACTION' 2.76 2.98 6 100 1492 . 0.2237 0.2890 . 129 . 1621 . . 'X-RAY DIFFRACTION' 2.98 3.28 6 100 1504 . 0.1952 0.2470 . 131 . 1635 . . 'X-RAY DIFFRACTION' 3.28 3.75 6 100 1523 . 0.1580 0.2281 . 132 . 1655 . . 'X-RAY DIFFRACTION' 3.75 4.72 6 100 1551 . 0.1318 0.1894 . 135 . 1686 . . 'X-RAY DIFFRACTION' 4.72 46.90 6 99.0 1658 . 0.1632 0.1900 . 145 . 1803 . . 'X-RAY DIFFRACTION' # _struct.entry_id 4JHI _struct.title 'Crystal Structure of Medicago truncatula Nodulin 13 (MtN13) in complex with N6-benzyladenine' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4JHI _struct_keywords.pdbx_keywords 'PLANT PROTEIN' _struct_keywords.text 'PR-10 FOLD, nodulin, nodulation, legume-bacteria symbiosis, nitrogen fixation, CYTOKININ BINDING, PLANT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 19 ? GLU A 29 ? SER A 15 GLU A 25 1 ? 11 HELX_P HELX_P2 2 ASP A 30 ? LEU A 39 ? ASP A 26 LEU A 35 1 ? 10 HELX_P HELX_P3 3 SER A 134 ? ASN A 159 ? SER A 130 ASN A 155 1 ? 26 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A PHE 63 O ? ? ? 1_555 B NA . NA ? ? A PHE 59 A NA 201 1_555 ? ? ? ? ? ? ? 2.569 ? ? metalc2 metalc ? ? A GLY 65 O ? ? ? 1_555 B NA . NA ? ? A GLY 61 A NA 201 1_555 ? ? ? ? ? ? ? 2.475 ? ? metalc3 metalc ? ? B NA . NA ? ? ? 1_555 D HOH . O ? ? A NA 201 A HOH 314 1_555 ? ? ? ? ? ? ? 2.422 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 7 ? SER A 16 ? VAL A 3 SER A 12 A 2 CYS A 116 ? THR A 126 ? CYS A 112 THR A 122 A 3 LEU A 99 ? PRO A 110 ? LEU A 95 PRO A 106 A 4 ALA A 83 ? VAL A 88 ? ALA A 79 VAL A 84 A 5 SER A 69 ? ASP A 78 ? SER A 65 ASP A 74 A 6 ILE A 58 ? PHE A 63 ? ILE A 54 PHE A 59 A 7 ILE A 43 ? GLU A 50 ? ILE A 39 GLU A 46 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR A 14 ? N TYR A 10 O VAL A 118 ? O VAL A 114 A 2 3 O ILE A 117 ? O ILE A 113 N VAL A 109 ? N VAL A 105 A 3 4 O PHE A 104 ? O PHE A 100 N TYR A 86 ? N TYR A 82 A 4 5 O ALA A 83 ? O ALA A 79 N ASP A 78 ? N ASP A 74 A 5 6 O THR A 70 ? O THR A 66 N LEU A 61 ? N LEU A 57 A 6 7 O ILE A 58 ? O ILE A 54 N LEU A 49 ? N LEU A 45 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NA 201 ? 4 'BINDING SITE FOR RESIDUE NA A 201' AC2 Software A EMU 202 ? 10 'BINDING SITE FOR RESIDUE EMU A 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 PHE A 63 ? PHE A 59 . ? 1_555 ? 2 AC1 4 GLY A 65 ? GLY A 61 . ? 1_555 ? 3 AC1 4 ALA A 93 ? ALA A 89 . ? 12_555 ? 4 AC1 4 HOH D . ? HOH A 314 . ? 1_555 ? 5 AC2 10 GLY A 65 ? GLY A 61 . ? 12_555 ? 6 AC2 10 ASP A 66 ? ASP A 62 . ? 12_555 ? 7 AC2 10 PHE A 67 ? PHE A 63 . ? 12_555 ? 8 AC2 10 THR A 70 ? THR A 66 . ? 1_555 ? 9 AC2 10 GLN A 72 ? GLN A 68 . ? 1_555 ? 10 AC2 10 TYR A 86 ? TYR A 82 . ? 1_555 ? 11 AC2 10 VAL A 88 ? VAL A 84 . ? 1_555 ? 12 AC2 10 PHE A 104 ? PHE A 100 . ? 1_555 ? 13 AC2 10 GLY A 141 ? GLY A 137 . ? 1_555 ? 14 AC2 10 ARG A 144 ? ARG A 140 . ? 1_555 ? # _atom_sites.entry_id 4JHI _atom_sites.fract_transf_matrix[1][1] 0.010407 _atom_sites.fract_transf_matrix[1][2] 0.006009 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012017 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008804 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N NA O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 -3 -3 ASP ASP A . n A 1 2 PRO 2 -2 -2 PRO PRO A . n A 1 3 PHE 3 -1 -1 PHE PHE A . n A 1 4 THR 4 0 0 THR THR A . n A 1 5 MET 5 1 1 MET MET A . n A 1 6 GLY 6 2 2 GLY GLY A . n A 1 7 VAL 7 3 3 VAL VAL A . n A 1 8 ILE 8 4 4 ILE ILE A . n A 1 9 THR 9 5 5 THR THR A . n A 1 10 SER 10 6 6 SER SER A . n A 1 11 GLU 11 7 7 GLU GLU A . n A 1 12 SER 12 8 8 SER SER A . n A 1 13 GLU 13 9 9 GLU GLU A . n A 1 14 TYR 14 10 10 TYR TYR A . n A 1 15 VAL 15 11 11 VAL VAL A . n A 1 16 SER 16 12 12 SER SER A . n A 1 17 SER 17 13 13 SER SER A . n A 1 18 LEU 18 14 14 LEU LEU A . n A 1 19 SER 19 15 15 SER SER A . n A 1 20 ALA 20 16 16 ALA ALA A . n A 1 21 GLU 21 17 17 GLU GLU A . n A 1 22 LYS 22 18 18 LYS LYS A . n A 1 23 LEU 23 19 19 LEU LEU A . n A 1 24 TYR 24 20 20 TYR TYR A . n A 1 25 ARG 25 21 21 ARG ARG A . n A 1 26 GLY 26 22 22 GLY GLY A . n A 1 27 ILE 27 23 23 ILE ILE A . n A 1 28 VAL 28 24 24 VAL VAL A . n A 1 29 GLU 29 25 25 GLU GLU A . n A 1 30 ASP 30 26 26 ASP ASP A . n A 1 31 GLY 31 27 27 GLY GLY A . n A 1 32 ASN 32 28 28 ASN ASN A . n A 1 33 ILE 33 29 29 ILE ILE A . n A 1 34 ILE 34 30 30 ILE ILE A . n A 1 35 TYR 35 31 31 TYR TYR A . n A 1 36 PRO 36 32 32 PRO PRO A . n A 1 37 LYS 37 33 33 LYS LYS A . n A 1 38 ALA 38 34 34 ALA ALA A . n A 1 39 LEU 39 35 35 LEU LEU A . n A 1 40 PRO 40 36 36 PRO PRO A . n A 1 41 ARG 41 37 37 ARG ARG A . n A 1 42 PHE 42 38 38 PHE PHE A . n A 1 43 ILE 43 39 39 ILE ILE A . n A 1 44 GLU 44 40 40 GLU GLU A . n A 1 45 LYS 45 41 41 LYS LYS A . n A 1 46 ALA 46 42 42 ALA ALA A . n A 1 47 GLU 47 43 43 GLU GLU A . n A 1 48 THR 48 44 44 THR THR A . n A 1 49 LEU 49 45 45 LEU LEU A . n A 1 50 GLU 50 46 46 GLU GLU A . n A 1 51 GLY 51 47 47 GLY GLY A . n A 1 52 ASP 52 48 48 ASP ASP A . n A 1 53 GLY 53 49 49 GLY GLY A . n A 1 54 GLY 54 50 50 GLY GLY A . n A 1 55 PRO 55 51 51 PRO PRO A . n A 1 56 GLY 56 52 52 GLY GLY A . n A 1 57 THR 57 53 53 THR THR A . n A 1 58 ILE 58 54 54 ILE ILE A . n A 1 59 LYS 59 55 55 LYS LYS A . n A 1 60 LYS 60 56 56 LYS LYS A . n A 1 61 LEU 61 57 57 LEU LEU A . n A 1 62 THR 62 58 58 THR THR A . n A 1 63 PHE 63 59 59 PHE PHE A . n A 1 64 VAL 64 60 60 VAL VAL A . n A 1 65 GLY 65 61 61 GLY GLY A . n A 1 66 ASP 66 62 62 ASP ASP A . n A 1 67 PHE 67 63 63 PHE PHE A . n A 1 68 GLY 68 64 64 GLY GLY A . n A 1 69 SER 69 65 65 SER SER A . n A 1 70 THR 70 66 66 THR THR A . n A 1 71 LYS 71 67 67 LYS LYS A . n A 1 72 GLN 72 68 68 GLN GLN A . n A 1 73 HIS 73 69 69 HIS HIS A . n A 1 74 ILE 74 70 70 ILE ILE A . n A 1 75 ASP 75 71 71 ASP ASP A . n A 1 76 MET 76 72 72 MET MET A . n A 1 77 VAL 77 73 73 VAL VAL A . n A 1 78 ASP 78 74 74 ASP ASP A . n A 1 79 ARG 79 75 75 ARG ARG A . n A 1 80 GLU 80 76 76 GLU GLU A . n A 1 81 ASN 81 77 77 ASN ASN A . n A 1 82 CYS 82 78 78 CYS CYS A . n A 1 83 ALA 83 79 79 ALA ALA A . n A 1 84 TYR 84 80 80 TYR TYR A . n A 1 85 THR 85 81 81 THR THR A . n A 1 86 TYR 86 82 82 TYR TYR A . n A 1 87 SER 87 83 83 SER SER A . n A 1 88 VAL 88 84 84 VAL VAL A . n A 1 89 TYR 89 85 85 TYR TYR A . n A 1 90 GLU 90 86 86 GLU GLU A . n A 1 91 GLY 91 87 87 GLY GLY A . n A 1 92 ILE 92 88 88 ILE ILE A . n A 1 93 ALA 93 89 89 ALA ALA A . n A 1 94 LEU 94 90 90 LEU LEU A . n A 1 95 SER 95 91 91 SER SER A . n A 1 96 ASP 96 92 92 ASP ASP A . n A 1 97 GLN 97 93 93 GLN GLN A . n A 1 98 PRO 98 94 94 PRO PRO A . n A 1 99 LEU 99 95 95 LEU LEU A . n A 1 100 GLU 100 96 96 GLU GLU A . n A 1 101 LYS 101 97 97 LYS LYS A . n A 1 102 ILE 102 98 98 ILE ILE A . n A 1 103 VAL 103 99 99 VAL VAL A . n A 1 104 PHE 104 100 100 PHE PHE A . n A 1 105 GLU 105 101 101 GLU GLU A . n A 1 106 PHE 106 102 102 PHE PHE A . n A 1 107 LYS 107 103 103 LYS LYS A . n A 1 108 LEU 108 104 104 LEU LEU A . n A 1 109 VAL 109 105 105 VAL VAL A . n A 1 110 PRO 110 106 106 PRO PRO A . n A 1 111 THR 111 107 107 THR THR A . n A 1 112 PRO 112 108 108 PRO PRO A . n A 1 113 GLU 113 109 109 GLU GLU A . n A 1 114 GLU 114 110 110 GLU GLU A . n A 1 115 GLY 115 111 111 GLY GLY A . n A 1 116 CYS 116 112 112 CYS CYS A . n A 1 117 ILE 117 113 113 ILE ILE A . n A 1 118 VAL 118 114 114 VAL VAL A . n A 1 119 LYS 119 115 115 LYS LYS A . n A 1 120 SER 120 116 116 SER SER A . n A 1 121 THR 121 117 117 THR THR A . n A 1 122 THR 122 118 118 THR THR A . n A 1 123 LYS 123 119 119 LYS LYS A . n A 1 124 TYR 124 120 120 TYR TYR A . n A 1 125 TYR 125 121 121 TYR TYR A . n A 1 126 THR 126 122 122 THR THR A . n A 1 127 LYS 127 123 123 LYS LYS A . n A 1 128 GLY 128 124 124 GLY GLY A . n A 1 129 ASP 129 125 125 ASP ASP A . n A 1 130 ASP 130 126 126 ASP ASP A . n A 1 131 ILE 131 127 127 ILE ILE A . n A 1 132 GLU 132 128 128 GLU GLU A . n A 1 133 LEU 133 129 129 LEU LEU A . n A 1 134 SER 134 130 130 SER SER A . n A 1 135 LYS 135 131 131 LYS LYS A . n A 1 136 ASP 136 132 132 ASP ASP A . n A 1 137 TYR 137 133 133 TYR TYR A . n A 1 138 LEU 138 134 134 LEU LEU A . n A 1 139 GLU 139 135 135 GLU GLU A . n A 1 140 ALA 140 136 136 ALA ALA A . n A 1 141 GLY 141 137 137 GLY GLY A . n A 1 142 ILE 142 138 138 ILE ILE A . n A 1 143 GLU 143 139 139 GLU GLU A . n A 1 144 ARG 144 140 140 ARG ARG A . n A 1 145 PHE 145 141 141 PHE PHE A . n A 1 146 GLU 146 142 142 GLU GLU A . n A 1 147 GLY 147 143 143 GLY GLY A . n A 1 148 PHE 148 144 144 PHE PHE A . n A 1 149 THR 149 145 145 THR THR A . n A 1 150 LYS 150 146 146 LYS LYS A . n A 1 151 ALA 151 147 147 ALA ALA A . n A 1 152 VAL 152 148 148 VAL VAL A . n A 1 153 GLU 153 149 149 GLU GLU A . n A 1 154 SER 154 150 150 SER SER A . n A 1 155 PHE 155 151 151 PHE PHE A . n A 1 156 LEU 156 152 152 LEU LEU A . n A 1 157 LEU 157 153 153 LEU LEU A . n A 1 158 ALA 158 154 154 ALA ALA A . n A 1 159 ASN 159 155 155 ASN ASN A . n A 1 160 PRO 160 156 156 PRO PRO A . n A 1 161 ASP 161 157 157 ASP ASP A . n A 1 162 TYR 162 158 158 TYR TYR A . n A 1 163 ASN 163 159 ? ? ? A . n A 1 164 LYS 164 160 ? ? ? A . n A 1 165 ASP 165 161 ? ? ? A . n A 1 166 SER 166 162 ? ? ? A . n A 1 167 ASN 167 163 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA 1 201 1 NA NA A . C 3 EMU 1 202 1 EMU EMU A . D 4 HOH 1 301 1 HOH HOH A . D 4 HOH 2 302 2 HOH HOH A . D 4 HOH 3 303 3 HOH HOH A . D 4 HOH 4 304 4 HOH HOH A . D 4 HOH 5 305 5 HOH HOH A . D 4 HOH 6 306 6 HOH HOH A . D 4 HOH 7 307 7 HOH HOH A . D 4 HOH 8 308 8 HOH HOH A . D 4 HOH 9 309 9 HOH HOH A . D 4 HOH 10 310 10 HOH HOH A . D 4 HOH 11 311 11 HOH HOH A . D 4 HOH 12 312 13 HOH HOH A . D 4 HOH 13 313 14 HOH HOH A . D 4 HOH 14 314 15 HOH HOH A . D 4 HOH 15 315 16 HOH HOH A . D 4 HOH 16 316 17 HOH HOH A . D 4 HOH 17 317 18 HOH HOH A . D 4 HOH 18 318 19 HOH HOH A . D 4 HOH 19 319 21 HOH HOH A . D 4 HOH 20 320 22 HOH HOH A . D 4 HOH 21 321 24 HOH HOH A . D 4 HOH 22 322 26 HOH HOH A . D 4 HOH 23 323 27 HOH HOH A . D 4 HOH 24 324 28 HOH HOH A . D 4 HOH 25 325 30 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3720 ? 1 MORE -27 ? 1 'SSA (A^2)' 15590 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 12_555 x,x-y,-z+1/3 0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 37.8613333333 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 323 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A PHE 63 ? A PHE 59 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 O ? A GLY 65 ? A GLY 61 ? 1_555 91.5 ? 2 O ? A PHE 63 ? A PHE 59 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 O ? D HOH . ? A HOH 314 ? 1_555 86.4 ? 3 O ? A GLY 65 ? A GLY 61 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 O ? D HOH . ? A HOH 314 ? 1_555 98.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-12-04 2 'Structure model' 1 1 2014-01-08 3 'Structure model' 1 2 2017-11-15 4 'Structure model' 1 3 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Refinement description' 5 4 'Structure model' Advisory 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Database references' 8 4 'Structure model' 'Derived calculations' 9 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' diffrn_source 2 3 'Structure model' pdbx_unobs_or_zero_occ_atoms 3 3 'Structure model' software 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' database_2 7 4 'Structure model' pdbx_initial_refinement_model 8 4 'Structure model' pdbx_struct_conn_angle 9 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 10 4 'Structure model' struct_conn 11 4 'Structure model' struct_ref_seq_dif 12 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.value' 16 4 'Structure model' '_struct_conn.pdbx_dist_value' 17 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 18 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 19 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 23 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 24 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 25 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 28 4 'Structure model' '_struct_ref_seq_dif.details' 29 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 30 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 31 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 2 PHENIX 1.8.1_1168 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 3 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 MAR345 . ? ? ? ? 'data collection' ? ? ? 5 XDS . ? ? ? ? 'data reduction' ? ? ? 6 PHASER . ? ? ? ? phasing ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 62 ? ? -84.54 42.65 2 1 GLU A 110 ? ? -129.45 -147.04 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A ARG 21 ? CZ ? A ARG 25 CZ 2 1 Y 0 A ARG 75 ? CZ ? A ARG 79 CZ 3 1 Y 0 A GLU 76 ? CD ? A GLU 80 CD # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASN 159 ? A ASN 163 2 1 Y 1 A LYS 160 ? A LYS 164 3 1 Y 1 A ASP 161 ? A ASP 165 4 1 Y 1 A SER 162 ? A SER 166 5 1 Y 1 A ASN 163 ? A ASN 167 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 EMU N1 N Y N 88 EMU C2 C Y N 89 EMU N3 N Y N 90 EMU C4 C Y N 91 EMU C5 C Y N 92 EMU C6 C Y N 93 EMU C9 C N N 94 EMU N7 N Y N 95 EMU C8 C Y N 96 EMU N9 N Y N 97 EMU C10 C Y N 98 EMU C11 C Y N 99 EMU C12 C Y N 100 EMU C13 C Y N 101 EMU C14 C Y N 102 EMU C15 C Y N 103 EMU N10 N N N 104 EMU H2 H N N 105 EMU H9C1 H N N 106 EMU H9C2 H N N 107 EMU H8 H N N 108 EMU H9 H N N 109 EMU H11 H N N 110 EMU H12 H N N 111 EMU H13 H N N 112 EMU H14 H N N 113 EMU H15 H N N 114 EMU H10 H N N 115 GLN N N N N 116 GLN CA C N S 117 GLN C C N N 118 GLN O O N N 119 GLN CB C N N 120 GLN CG C N N 121 GLN CD C N N 122 GLN OE1 O N N 123 GLN NE2 N N N 124 GLN OXT O N N 125 GLN H H N N 126 GLN H2 H N N 127 GLN HA H N N 128 GLN HB2 H N N 129 GLN HB3 H N N 130 GLN HG2 H N N 131 GLN HG3 H N N 132 GLN HE21 H N N 133 GLN HE22 H N N 134 GLN HXT H N N 135 GLU N N N N 136 GLU CA C N S 137 GLU C C N N 138 GLU O O N N 139 GLU CB C N N 140 GLU CG C N N 141 GLU CD C N N 142 GLU OE1 O N N 143 GLU OE2 O N N 144 GLU OXT O N N 145 GLU H H N N 146 GLU H2 H N N 147 GLU HA H N N 148 GLU HB2 H N N 149 GLU HB3 H N N 150 GLU HG2 H N N 151 GLU HG3 H N N 152 GLU HE2 H N N 153 GLU HXT H N N 154 GLY N N N N 155 GLY CA C N N 156 GLY C C N N 157 GLY O O N N 158 GLY OXT O N N 159 GLY H H N N 160 GLY H2 H N N 161 GLY HA2 H N N 162 GLY HA3 H N N 163 GLY HXT H N N 164 HIS N N N N 165 HIS CA C N S 166 HIS C C N N 167 HIS O O N N 168 HIS CB C N N 169 HIS CG C Y N 170 HIS ND1 N Y N 171 HIS CD2 C Y N 172 HIS CE1 C Y N 173 HIS NE2 N Y N 174 HIS OXT O N N 175 HIS H H N N 176 HIS H2 H N N 177 HIS HA H N N 178 HIS HB2 H N N 179 HIS HB3 H N N 180 HIS HD1 H N N 181 HIS HD2 H N N 182 HIS HE1 H N N 183 HIS HE2 H N N 184 HIS HXT H N N 185 HOH O O N N 186 HOH H1 H N N 187 HOH H2 H N N 188 ILE N N N N 189 ILE CA C N S 190 ILE C C N N 191 ILE O O N N 192 ILE CB C N S 193 ILE CG1 C N N 194 ILE CG2 C N N 195 ILE CD1 C N N 196 ILE OXT O N N 197 ILE H H N N 198 ILE H2 H N N 199 ILE HA H N N 200 ILE HB H N N 201 ILE HG12 H N N 202 ILE HG13 H N N 203 ILE HG21 H N N 204 ILE HG22 H N N 205 ILE HG23 H N N 206 ILE HD11 H N N 207 ILE HD12 H N N 208 ILE HD13 H N N 209 ILE HXT H N N 210 LEU N N N N 211 LEU CA C N S 212 LEU C C N N 213 LEU O O N N 214 LEU CB C N N 215 LEU CG C N N 216 LEU CD1 C N N 217 LEU CD2 C N N 218 LEU OXT O N N 219 LEU H H N N 220 LEU H2 H N N 221 LEU HA H N N 222 LEU HB2 H N N 223 LEU HB3 H N N 224 LEU HG H N N 225 LEU HD11 H N N 226 LEU HD12 H N N 227 LEU HD13 H N N 228 LEU HD21 H N N 229 LEU HD22 H N N 230 LEU HD23 H N N 231 LEU HXT H N N 232 LYS N N N N 233 LYS CA C N S 234 LYS C C N N 235 LYS O O N N 236 LYS CB C N N 237 LYS CG C N N 238 LYS CD C N N 239 LYS CE C N N 240 LYS NZ N N N 241 LYS OXT O N N 242 LYS H H N N 243 LYS H2 H N N 244 LYS HA H N N 245 LYS HB2 H N N 246 LYS HB3 H N N 247 LYS HG2 H N N 248 LYS HG3 H N N 249 LYS HD2 H N N 250 LYS HD3 H N N 251 LYS HE2 H N N 252 LYS HE3 H N N 253 LYS HZ1 H N N 254 LYS HZ2 H N N 255 LYS HZ3 H N N 256 LYS HXT H N N 257 MET N N N N 258 MET CA C N S 259 MET C C N N 260 MET O O N N 261 MET CB C N N 262 MET CG C N N 263 MET SD S N N 264 MET CE C N N 265 MET OXT O N N 266 MET H H N N 267 MET H2 H N N 268 MET HA H N N 269 MET HB2 H N N 270 MET HB3 H N N 271 MET HG2 H N N 272 MET HG3 H N N 273 MET HE1 H N N 274 MET HE2 H N N 275 MET HE3 H N N 276 MET HXT H N N 277 NA NA NA N N 278 PHE N N N N 279 PHE CA C N S 280 PHE C C N N 281 PHE O O N N 282 PHE CB C N N 283 PHE CG C Y N 284 PHE CD1 C Y N 285 PHE CD2 C Y N 286 PHE CE1 C Y N 287 PHE CE2 C Y N 288 PHE CZ C Y N 289 PHE OXT O N N 290 PHE H H N N 291 PHE H2 H N N 292 PHE HA H N N 293 PHE HB2 H N N 294 PHE HB3 H N N 295 PHE HD1 H N N 296 PHE HD2 H N N 297 PHE HE1 H N N 298 PHE HE2 H N N 299 PHE HZ H N N 300 PHE HXT H N N 301 PRO N N N N 302 PRO CA C N S 303 PRO C C N N 304 PRO O O N N 305 PRO CB C N N 306 PRO CG C N N 307 PRO CD C N N 308 PRO OXT O N N 309 PRO H H N N 310 PRO HA H N N 311 PRO HB2 H N N 312 PRO HB3 H N N 313 PRO HG2 H N N 314 PRO HG3 H N N 315 PRO HD2 H N N 316 PRO HD3 H N N 317 PRO HXT H N N 318 SER N N N N 319 SER CA C N S 320 SER C C N N 321 SER O O N N 322 SER CB C N N 323 SER OG O N N 324 SER OXT O N N 325 SER H H N N 326 SER H2 H N N 327 SER HA H N N 328 SER HB2 H N N 329 SER HB3 H N N 330 SER HG H N N 331 SER HXT H N N 332 THR N N N N 333 THR CA C N S 334 THR C C N N 335 THR O O N N 336 THR CB C N R 337 THR OG1 O N N 338 THR CG2 C N N 339 THR OXT O N N 340 THR H H N N 341 THR H2 H N N 342 THR HA H N N 343 THR HB H N N 344 THR HG1 H N N 345 THR HG21 H N N 346 THR HG22 H N N 347 THR HG23 H N N 348 THR HXT H N N 349 TYR N N N N 350 TYR CA C N S 351 TYR C C N N 352 TYR O O N N 353 TYR CB C N N 354 TYR CG C Y N 355 TYR CD1 C Y N 356 TYR CD2 C Y N 357 TYR CE1 C Y N 358 TYR CE2 C Y N 359 TYR CZ C Y N 360 TYR OH O N N 361 TYR OXT O N N 362 TYR H H N N 363 TYR H2 H N N 364 TYR HA H N N 365 TYR HB2 H N N 366 TYR HB3 H N N 367 TYR HD1 H N N 368 TYR HD2 H N N 369 TYR HE1 H N N 370 TYR HE2 H N N 371 TYR HH H N N 372 TYR HXT H N N 373 VAL N N N N 374 VAL CA C N S 375 VAL C C N N 376 VAL O O N N 377 VAL CB C N N 378 VAL CG1 C N N 379 VAL CG2 C N N 380 VAL OXT O N N 381 VAL H H N N 382 VAL H2 H N N 383 VAL HA H N N 384 VAL HB H N N 385 VAL HG11 H N N 386 VAL HG12 H N N 387 VAL HG13 H N N 388 VAL HG21 H N N 389 VAL HG22 H N N 390 VAL HG23 H N N 391 VAL HXT H N N 392 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 EMU N1 C2 sing Y N 83 EMU N1 C6 doub Y N 84 EMU C2 N3 doub Y N 85 EMU C2 H2 sing N N 86 EMU N3 C4 sing Y N 87 EMU C4 C5 doub Y N 88 EMU C4 N9 sing Y N 89 EMU C5 C6 sing Y N 90 EMU C5 N7 sing Y N 91 EMU C6 N10 sing N N 92 EMU C9 C10 sing N N 93 EMU C9 N10 sing N N 94 EMU C9 H9C1 sing N N 95 EMU C9 H9C2 sing N N 96 EMU N7 C8 doub Y N 97 EMU C8 N9 sing Y N 98 EMU C8 H8 sing N N 99 EMU N9 H9 sing N N 100 EMU C10 C11 sing Y N 101 EMU C10 C15 doub Y N 102 EMU C11 C12 doub Y N 103 EMU C11 H11 sing N N 104 EMU C12 C13 sing Y N 105 EMU C12 H12 sing N N 106 EMU C13 C14 doub Y N 107 EMU C13 H13 sing N N 108 EMU C14 C15 sing Y N 109 EMU C14 H14 sing N N 110 EMU C15 H15 sing N N 111 EMU N10 H10 sing N N 112 GLN N CA sing N N 113 GLN N H sing N N 114 GLN N H2 sing N N 115 GLN CA C sing N N 116 GLN CA CB sing N N 117 GLN CA HA sing N N 118 GLN C O doub N N 119 GLN C OXT sing N N 120 GLN CB CG sing N N 121 GLN CB HB2 sing N N 122 GLN CB HB3 sing N N 123 GLN CG CD sing N N 124 GLN CG HG2 sing N N 125 GLN CG HG3 sing N N 126 GLN CD OE1 doub N N 127 GLN CD NE2 sing N N 128 GLN NE2 HE21 sing N N 129 GLN NE2 HE22 sing N N 130 GLN OXT HXT sing N N 131 GLU N CA sing N N 132 GLU N H sing N N 133 GLU N H2 sing N N 134 GLU CA C sing N N 135 GLU CA CB sing N N 136 GLU CA HA sing N N 137 GLU C O doub N N 138 GLU C OXT sing N N 139 GLU CB CG sing N N 140 GLU CB HB2 sing N N 141 GLU CB HB3 sing N N 142 GLU CG CD sing N N 143 GLU CG HG2 sing N N 144 GLU CG HG3 sing N N 145 GLU CD OE1 doub N N 146 GLU CD OE2 sing N N 147 GLU OE2 HE2 sing N N 148 GLU OXT HXT sing N N 149 GLY N CA sing N N 150 GLY N H sing N N 151 GLY N H2 sing N N 152 GLY CA C sing N N 153 GLY CA HA2 sing N N 154 GLY CA HA3 sing N N 155 GLY C O doub N N 156 GLY C OXT sing N N 157 GLY OXT HXT sing N N 158 HIS N CA sing N N 159 HIS N H sing N N 160 HIS N H2 sing N N 161 HIS CA C sing N N 162 HIS CA CB sing N N 163 HIS CA HA sing N N 164 HIS C O doub N N 165 HIS C OXT sing N N 166 HIS CB CG sing N N 167 HIS CB HB2 sing N N 168 HIS CB HB3 sing N N 169 HIS CG ND1 sing Y N 170 HIS CG CD2 doub Y N 171 HIS ND1 CE1 doub Y N 172 HIS ND1 HD1 sing N N 173 HIS CD2 NE2 sing Y N 174 HIS CD2 HD2 sing N N 175 HIS CE1 NE2 sing Y N 176 HIS CE1 HE1 sing N N 177 HIS NE2 HE2 sing N N 178 HIS OXT HXT sing N N 179 HOH O H1 sing N N 180 HOH O H2 sing N N 181 ILE N CA sing N N 182 ILE N H sing N N 183 ILE N H2 sing N N 184 ILE CA C sing N N 185 ILE CA CB sing N N 186 ILE CA HA sing N N 187 ILE C O doub N N 188 ILE C OXT sing N N 189 ILE CB CG1 sing N N 190 ILE CB CG2 sing N N 191 ILE CB HB sing N N 192 ILE CG1 CD1 sing N N 193 ILE CG1 HG12 sing N N 194 ILE CG1 HG13 sing N N 195 ILE CG2 HG21 sing N N 196 ILE CG2 HG22 sing N N 197 ILE CG2 HG23 sing N N 198 ILE CD1 HD11 sing N N 199 ILE CD1 HD12 sing N N 200 ILE CD1 HD13 sing N N 201 ILE OXT HXT sing N N 202 LEU N CA sing N N 203 LEU N H sing N N 204 LEU N H2 sing N N 205 LEU CA C sing N N 206 LEU CA CB sing N N 207 LEU CA HA sing N N 208 LEU C O doub N N 209 LEU C OXT sing N N 210 LEU CB CG sing N N 211 LEU CB HB2 sing N N 212 LEU CB HB3 sing N N 213 LEU CG CD1 sing N N 214 LEU CG CD2 sing N N 215 LEU CG HG sing N N 216 LEU CD1 HD11 sing N N 217 LEU CD1 HD12 sing N N 218 LEU CD1 HD13 sing N N 219 LEU CD2 HD21 sing N N 220 LEU CD2 HD22 sing N N 221 LEU CD2 HD23 sing N N 222 LEU OXT HXT sing N N 223 LYS N CA sing N N 224 LYS N H sing N N 225 LYS N H2 sing N N 226 LYS CA C sing N N 227 LYS CA CB sing N N 228 LYS CA HA sing N N 229 LYS C O doub N N 230 LYS C OXT sing N N 231 LYS CB CG sing N N 232 LYS CB HB2 sing N N 233 LYS CB HB3 sing N N 234 LYS CG CD sing N N 235 LYS CG HG2 sing N N 236 LYS CG HG3 sing N N 237 LYS CD CE sing N N 238 LYS CD HD2 sing N N 239 LYS CD HD3 sing N N 240 LYS CE NZ sing N N 241 LYS CE HE2 sing N N 242 LYS CE HE3 sing N N 243 LYS NZ HZ1 sing N N 244 LYS NZ HZ2 sing N N 245 LYS NZ HZ3 sing N N 246 LYS OXT HXT sing N N 247 MET N CA sing N N 248 MET N H sing N N 249 MET N H2 sing N N 250 MET CA C sing N N 251 MET CA CB sing N N 252 MET CA HA sing N N 253 MET C O doub N N 254 MET C OXT sing N N 255 MET CB CG sing N N 256 MET CB HB2 sing N N 257 MET CB HB3 sing N N 258 MET CG SD sing N N 259 MET CG HG2 sing N N 260 MET CG HG3 sing N N 261 MET SD CE sing N N 262 MET CE HE1 sing N N 263 MET CE HE2 sing N N 264 MET CE HE3 sing N N 265 MET OXT HXT sing N N 266 PHE N CA sing N N 267 PHE N H sing N N 268 PHE N H2 sing N N 269 PHE CA C sing N N 270 PHE CA CB sing N N 271 PHE CA HA sing N N 272 PHE C O doub N N 273 PHE C OXT sing N N 274 PHE CB CG sing N N 275 PHE CB HB2 sing N N 276 PHE CB HB3 sing N N 277 PHE CG CD1 doub Y N 278 PHE CG CD2 sing Y N 279 PHE CD1 CE1 sing Y N 280 PHE CD1 HD1 sing N N 281 PHE CD2 CE2 doub Y N 282 PHE CD2 HD2 sing N N 283 PHE CE1 CZ doub Y N 284 PHE CE1 HE1 sing N N 285 PHE CE2 CZ sing Y N 286 PHE CE2 HE2 sing N N 287 PHE CZ HZ sing N N 288 PHE OXT HXT sing N N 289 PRO N CA sing N N 290 PRO N CD sing N N 291 PRO N H sing N N 292 PRO CA C sing N N 293 PRO CA CB sing N N 294 PRO CA HA sing N N 295 PRO C O doub N N 296 PRO C OXT sing N N 297 PRO CB CG sing N N 298 PRO CB HB2 sing N N 299 PRO CB HB3 sing N N 300 PRO CG CD sing N N 301 PRO CG HG2 sing N N 302 PRO CG HG3 sing N N 303 PRO CD HD2 sing N N 304 PRO CD HD3 sing N N 305 PRO OXT HXT sing N N 306 SER N CA sing N N 307 SER N H sing N N 308 SER N H2 sing N N 309 SER CA C sing N N 310 SER CA CB sing N N 311 SER CA HA sing N N 312 SER C O doub N N 313 SER C OXT sing N N 314 SER CB OG sing N N 315 SER CB HB2 sing N N 316 SER CB HB3 sing N N 317 SER OG HG sing N N 318 SER OXT HXT sing N N 319 THR N CA sing N N 320 THR N H sing N N 321 THR N H2 sing N N 322 THR CA C sing N N 323 THR CA CB sing N N 324 THR CA HA sing N N 325 THR C O doub N N 326 THR C OXT sing N N 327 THR CB OG1 sing N N 328 THR CB CG2 sing N N 329 THR CB HB sing N N 330 THR OG1 HG1 sing N N 331 THR CG2 HG21 sing N N 332 THR CG2 HG22 sing N N 333 THR CG2 HG23 sing N N 334 THR OXT HXT sing N N 335 TYR N CA sing N N 336 TYR N H sing N N 337 TYR N H2 sing N N 338 TYR CA C sing N N 339 TYR CA CB sing N N 340 TYR CA HA sing N N 341 TYR C O doub N N 342 TYR C OXT sing N N 343 TYR CB CG sing N N 344 TYR CB HB2 sing N N 345 TYR CB HB3 sing N N 346 TYR CG CD1 doub Y N 347 TYR CG CD2 sing Y N 348 TYR CD1 CE1 sing Y N 349 TYR CD1 HD1 sing N N 350 TYR CD2 CE2 doub Y N 351 TYR CD2 HD2 sing N N 352 TYR CE1 CZ doub Y N 353 TYR CE1 HE1 sing N N 354 TYR CE2 CZ sing Y N 355 TYR CE2 HE2 sing N N 356 TYR CZ OH sing N N 357 TYR OH HH sing N N 358 TYR OXT HXT sing N N 359 VAL N CA sing N N 360 VAL N H sing N N 361 VAL N H2 sing N N 362 VAL CA C sing N N 363 VAL CA CB sing N N 364 VAL CA HA sing N N 365 VAL C O doub N N 366 VAL C OXT sing N N 367 VAL CB CG1 sing N N 368 VAL CB CG2 sing N N 369 VAL CB HB sing N N 370 VAL CG1 HG11 sing N N 371 VAL CG1 HG12 sing N N 372 VAL CG1 HG13 sing N N 373 VAL CG2 HG21 sing N N 374 VAL CG2 HG22 sing N N 375 VAL CG2 HG23 sing N N 376 VAL OXT HXT sing N N 377 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SODIUM ION' NA 3 N-BENZYL-9H-PURIN-6-AMINE EMU 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3RWS _pdbx_initial_refinement_model.details 'PDB entry 3rws' #