HEADER HYDROLASE 07-MAR-13 4JJ2 TITLE HIGH RESOLUTION STRUCTURE OF A C-TERMINAL FRAGMENT OF THE T4 PHAGE GP5 TITLE 2 BETA-HELIX COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAIL-ASSOCIATED LYSOZYME; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: UNP RESIDUES 483-575; COMPND 5 SYNONYM: PROTEIN GP5, GP5*, GP5C; COMPND 6 EC: 3.2.1.17; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE T4; SOURCE 3 ORGANISM_TAXID: 10665; SOURCE 4 GENE: 5; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834/DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHISTRX2, PET-32A DERIVATIVE KEYWDS PAAR-BINDING, TRIPLE BETA-HELIX, INTERTWINED BETA-HELIX, CELL- KEYWDS 2 PUNCTURING DEVICE, T4 GP5.4, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.A.BUTH,P.G.LEIMAN,S.P.BOUDKO REVDAT 4 29-MAY-24 4JJ2 1 REMARK REVDAT 3 08-FEB-23 4JJ2 1 JRNL REMARK SEQADV LINK REVDAT 2 15-NOV-17 4JJ2 1 REMARK REVDAT 1 12-MAR-14 4JJ2 0 JRNL AUTH S.A.BUTH,L.MENIN,M.M.SHNEIDER,J.ENGEL,S.P.BOUDKO,P.G.LEIMAN JRNL TITL STRUCTURE AND BIOPHYSICAL PROPERTIES OF A TRIPLE-STRANDED JRNL TITL 2 BETA-HELIX COMPRISING THE CENTRAL SPIKE OF BACTERIOPHAGE T4. JRNL REF VIRUSES V. 7 4676 2015 JRNL REFN ESSN 1999-4915 JRNL PMID 26295253 JRNL DOI 10.3390/V7082839 REMARK 2 REMARK 2 RESOLUTION. 1.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELX 2013 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.154 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.153 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 6.700 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 4689 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 71101 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.142 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.141 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.166 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 5.500 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 3864 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2010 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 59 REMARK 3 SOLVENT ATOMS : 329 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 2395.2 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : NULL REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 51 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 23907 REMARK 3 NUMBER OF RESTRAINTS : 32750 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.017 REMARK 3 ANGLE DISTANCES (A) : 0.041 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : NULL REMARK 3 ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : NULL REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL REMARK 3 SIMILAR ADP COMPONENTS (A**2) : NULL REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JJ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000078108. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : SI(111) MONOCHROMATOR REMARK 200 OPTICS : TOROIDAL FOCUSING MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70372 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.280 REMARK 200 RESOLUTION RANGE LOW (A) : 99.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 10.20 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.29900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.03-0.05M CACL2, 0.1M NAAC PH 5.2, 11 REMARK 280 -15% MPD, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.24500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.24500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 28.80450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.38200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 28.80450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.38200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.24500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 28.80450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 36.38200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.24500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 28.80450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 36.38200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 23320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 745 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 756 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 810 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 791 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 481 REMARK 465 SER A 482 REMARK 465 ARG A 483 REMARK 465 GLY B 481 REMARK 465 SER B 482 REMARK 465 ARG B 483 REMARK 465 GLY C 481 REMARK 465 SER C 482 REMARK 465 ARG C 483 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE2 TYR A 565 O ASP B 568 1.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 565 CB - CA - C ANGL. DEV. = -16.0 DEGREES REMARK 500 TYR A 565 N - CA - CB ANGL. DEV. = -11.2 DEGREES REMARK 500 TYR A 565 N - CA - CB ANGL. DEV. = 19.4 DEGREES REMARK 500 TYR A 565 CB - CG - CD2 ANGL. DEV. = -8.1 DEGREES REMARK 500 TYR A 565 CB - CG - CD1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ASP A 568 CA - C - O ANGL. DEV. = -13.5 DEGREES REMARK 500 ASP A 573 CB - CG - OD1 ANGL. DEV. = -8.4 DEGREES REMARK 500 ASP A 573 CB - CG - OD2 ANGL. DEV. = 10.4 DEGREES REMARK 500 ILE A 574 O - C - N ANGL. DEV. = -12.5 DEGREES REMARK 500 ASP B 485 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 GLN B 564 N - CA - CB ANGL. DEV. = -11.4 DEGREES REMARK 500 GLN B 564 CA - CB - CG ANGL. DEV. = 17.4 DEGREES REMARK 500 TYR B 565 CB - CG - CD2 ANGL. DEV. = -6.6 DEGREES REMARK 500 TYR B 565 CB - CG - CD1 ANGL. DEV. = 7.1 DEGREES REMARK 500 TYR B 565 CG - CD1 - CE1 ANGL. DEV. = 6.7 DEGREES REMARK 500 TYR B 565 CD1 - CE1 - CZ ANGL. DEV. = -6.2 DEGREES REMARK 500 ASP B 568 CB - CG - OD1 ANGL. DEV. = 8.8 DEGREES REMARK 500 ASP B 568 CB - CG - OD2 ANGL. DEV. = -7.5 DEGREES REMARK 500 ARG B 571 CA - CB - CG ANGL. DEV. = 19.4 DEGREES REMARK 500 ARG B 571 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ASP B 573 CB - CG - OD1 ANGL. DEV. = -7.7 DEGREES REMARK 500 ASP B 573 CB - CG - OD2 ANGL. DEV. = 10.6 DEGREES REMARK 500 MET C 554 CG - SD - CE ANGL. DEV. = -16.1 DEGREES REMARK 500 ASP C 568 CB - CA - C ANGL. DEV. = -13.6 DEGREES REMARK 500 ASP C 568 CA - CB - CG ANGL. DEV. = 16.3 DEGREES REMARK 500 ASP C 568 CB - CG - OD1 ANGL. DEV. = -5.9 DEGREES REMARK 500 ASP C 568 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG C 571 CD - NE - CZ ANGL. DEV. = 19.8 DEGREES REMARK 500 ARG C 571 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 491 52.70 -90.26 REMARK 500 LYS B 499 56.56 -90.29 REMARK 500 LYS C 499 55.87 -92.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 711 O REMARK 620 2 HOH A 714 O 81.7 REMARK 620 3 HOH B 705 O 103.7 89.1 REMARK 620 4 HOH B 712 O 91.0 169.4 85.1 REMARK 620 5 HOH C 704 O 165.0 86.5 85.1 101.8 REMARK 620 6 HOH C 711 O 89.7 98.9 165.3 88.7 83.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ELA A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLM B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE STE C 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1K28 RELATED DB: PDB REMARK 900 FULL-LENGTH T4 PHAGE GP5 PROTEIN IN COMPLEX WITH GP27 DBREF 4JJ2 A 483 575 UNP P16009 VG05_BPT4 483 575 DBREF 4JJ2 B 483 575 UNP P16009 VG05_BPT4 483 575 DBREF 4JJ2 C 483 575 UNP P16009 VG05_BPT4 483 575 SEQADV 4JJ2 GLY A 481 UNP P16009 EXPRESSION TAG SEQADV 4JJ2 SER A 482 UNP P16009 EXPRESSION TAG SEQADV 4JJ2 GLY B 481 UNP P16009 EXPRESSION TAG SEQADV 4JJ2 SER B 482 UNP P16009 EXPRESSION TAG SEQADV 4JJ2 GLY C 481 UNP P16009 EXPRESSION TAG SEQADV 4JJ2 SER C 482 UNP P16009 EXPRESSION TAG SEQRES 1 A 95 GLY SER ARG GLY ASP GLU THR LYS THR VAL GLU GLY ASN SEQRES 2 A 95 GLY THR ILE LEU VAL LYS GLY ASN VAL THR ILE ILE VAL SEQRES 3 A 95 GLU GLY ASN ALA ASP ILE THR VAL LYS GLY ASP ALA THR SEQRES 4 A 95 THR LEU VAL GLU GLY ASN GLN THR ASN THR VAL ASN GLY SEQRES 5 A 95 ASN LEU SER TRP LYS VAL ALA GLY THR VAL ASP TRP ASP SEQRES 6 A 95 VAL GLY GLY ASP TRP THR GLU LYS MET ALA SER MET SER SEQRES 7 A 95 SER ILE SER SER GLY GLN TYR THR ILE ASP GLY SER ARG SEQRES 8 A 95 ILE ASP ILE GLY SEQRES 1 B 95 GLY SER ARG GLY ASP GLU THR LYS THR VAL GLU GLY ASN SEQRES 2 B 95 GLY THR ILE LEU VAL LYS GLY ASN VAL THR ILE ILE VAL SEQRES 3 B 95 GLU GLY ASN ALA ASP ILE THR VAL LYS GLY ASP ALA THR SEQRES 4 B 95 THR LEU VAL GLU GLY ASN GLN THR ASN THR VAL ASN GLY SEQRES 5 B 95 ASN LEU SER TRP LYS VAL ALA GLY THR VAL ASP TRP ASP SEQRES 6 B 95 VAL GLY GLY ASP TRP THR GLU LYS MET ALA SER MET SER SEQRES 7 B 95 SER ILE SER SER GLY GLN TYR THR ILE ASP GLY SER ARG SEQRES 8 B 95 ILE ASP ILE GLY SEQRES 1 C 95 GLY SER ARG GLY ASP GLU THR LYS THR VAL GLU GLY ASN SEQRES 2 C 95 GLY THR ILE LEU VAL LYS GLY ASN VAL THR ILE ILE VAL SEQRES 3 C 95 GLU GLY ASN ALA ASP ILE THR VAL LYS GLY ASP ALA THR SEQRES 4 C 95 THR LEU VAL GLU GLY ASN GLN THR ASN THR VAL ASN GLY SEQRES 5 C 95 ASN LEU SER TRP LYS VAL ALA GLY THR VAL ASP TRP ASP SEQRES 6 C 95 VAL GLY GLY ASP TRP THR GLU LYS MET ALA SER MET SER SEQRES 7 C 95 SER ILE SER SER GLY GLN TYR THR ILE ASP GLY SER ARG SEQRES 8 C 95 ILE ASP ILE GLY HET MG A 601 1 HET ELA A 602 20 HET PLM B 601 18 HET STE C 601 20 HETNAM MG MAGNESIUM ION HETNAM ELA 9-OCTADECENOIC ACID HETNAM PLM PALMITIC ACID HETNAM STE STEARIC ACID FORMUL 4 MG MG 2+ FORMUL 5 ELA C18 H34 O2 FORMUL 6 PLM C16 H32 O2 FORMUL 7 STE C18 H36 O2 FORMUL 8 HOH *329(H2 O) SHEET 1 A12 GLU A 486 VAL A 490 0 SHEET 2 A12 GLY B 494 VAL B 498 1 O LEU B 497 N VAL A 490 SHEET 3 A12 VAL C 502 VAL C 506 1 O ILE C 505 N VAL B 498 SHEET 4 A12 ALA A 510 VAL A 514 1 N THR A 513 O VAL C 506 SHEET 5 A12 ALA B 518 VAL B 522 1 O LEU B 521 N VAL A 514 SHEET 6 A12 GLN C 526 VAL C 530 1 O THR C 529 N VAL B 522 SHEET 7 A12 LEU A 534 VAL A 538 1 N SER A 535 O ASN C 528 SHEET 8 A12 VAL B 542 VAL B 546 1 O ASP B 543 N TRP A 536 SHEET 9 A12 ASP C 549 MET C 554 1 O THR C 551 N VAL B 542 SHEET 10 A12 SER A 556 SER A 561 1 N SER A 556 O TRP C 550 SHEET 11 A12 TYR B 565 ASP B 568 1 O THR B 566 N MET A 557 SHEET 12 A12 ILE C 572 ILE C 574 1 O ASP C 573 N TYR B 565 SHEET 1 B12 ARG B 571 ILE B 574 0 SHEET 2 B12 GLN A 564 ASP A 568 1 N TYR A 565 O ASP B 573 SHEET 3 B12 SER C 556 SER C 561 1 O SER C 559 N THR A 566 SHEET 4 B12 ASP B 549 MET B 554 1 N TRP B 550 O SER C 556 SHEET 5 B12 VAL A 542 VAL A 546 1 N VAL A 542 O THR B 551 SHEET 6 B12 LEU C 534 VAL C 538 1 O VAL C 538 N ASP A 545 SHEET 7 B12 GLN B 526 VAL B 530 1 N VAL B 530 O LYS C 537 SHEET 8 B12 ALA A 518 VAL A 522 1 N THR A 520 O THR B 527 SHEET 9 B12 ALA C 510 VAL C 514 1 O VAL C 514 N LEU A 521 SHEET 10 B12 VAL B 502 VAL B 506 1 N VAL B 506 O THR C 513 SHEET 11 B12 GLY A 494 VAL A 498 1 N VAL A 498 O ILE B 505 SHEET 12 B12 GLU C 486 VAL C 490 1 O VAL C 490 N LEU A 497 SHEET 1 C12 ARG A 571 ILE A 574 0 SHEET 2 C12 GLN C 564 ASP C 568 1 O ILE C 567 N ASP A 573 SHEET 3 C12 SER B 556 SER B 561 1 N MET B 557 O THR C 566 SHEET 4 C12 ASP A 549 MET A 554 1 N TRP A 550 O SER B 556 SHEET 5 C12 VAL C 542 VAL C 546 1 O VAL C 546 N LYS A 553 SHEET 6 C12 LEU B 534 VAL B 538 1 N VAL B 538 O ASP C 545 SHEET 7 C12 GLN A 526 VAL A 530 1 N VAL A 530 O LYS B 537 SHEET 8 C12 ALA C 518 VAL C 522 1 O THR C 520 N THR A 529 SHEET 9 C12 ALA B 510 VAL B 514 1 N VAL B 514 O LEU C 521 SHEET 10 C12 VAL A 502 VAL A 506 1 N ILE A 504 O ASP B 511 SHEET 11 C12 GLY C 494 VAL C 498 1 O VAL C 498 N ILE A 505 SHEET 12 C12 GLU B 486 VAL B 490 1 N VAL B 490 O LEU C 497 LINK MG MG A 601 O HOH A 711 1555 1555 2.11 LINK MG MG A 601 O HOH A 714 1555 1555 2.17 LINK MG MG A 601 O HOH B 705 1555 1555 2.25 LINK MG MG A 601 O HOH B 712 1555 1555 2.09 LINK MG MG A 601 O HOH C 704 1555 1555 2.21 LINK MG MG A 601 O HOH C 711 1555 1555 2.14 SITE 1 AC1 6 HOH A 711 HOH A 714 HOH B 705 HOH B 712 SITE 2 AC1 6 HOH C 704 HOH C 711 SITE 1 AC2 6 GLU A 486 ILE A 512 ILE B 496 ILE C 496 SITE 2 AC2 6 VAL C 502 ILE C 504 SITE 1 AC3 6 ILE A 496 THR A 520 ILE B 512 HOH B 775 SITE 2 AC3 6 THR C 495 THR C 520 SITE 1 AC4 7 GLY A 494 THR A 495 ILE B 496 VAL B 502 SITE 2 AC4 7 GLN B 526 GLU C 486 ILE C 512 CRYST1 57.609 72.764 130.490 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017358 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013743 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007663 0.00000