HEADER TRANSFERASE 08-MAR-13 4JJP TITLE 2.06 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF PHOSPHOMETHYLPYRIMIDINE TITLE 2 KINASE (THID)FROM CLOSTRIDIUM DIFFICILE 630 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOMETHYLPYRIMIDINE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.4.7; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM DIFFICILE; SOURCE 3 ORGANISM_TAXID: 272563; SOURCE 4 STRAIN: 630; SOURCE 5 GENE: CD630_15990, THID; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS IDP05735, BIOSYNTHESIS OF COFACTORS, PROSTHETIC GROUPS, AND CARRIERS: KEYWDS 2 THIAMINE, PHOSPHOMETHYLPYRIMIDINE KINASE, THID, CLOSTRIDIUM KEYWDS 3 DIFFICILE 630, VIRULENCE, PATHOGENESIS, STRUCTURAL GENOMICS, NIAID, KEYWDS 4 NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES, CENTER FOR KEYWDS 5 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID, ALPHA/BETA FOLD, KEYWDS 6 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.S.HALAVATY,Z.WAWRZAK,O.ONOPRIYENKO,S.GRIMSHAW,A.SAVCHENKO, AUTHOR 2 W.F.ANDERSON,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID) REVDAT 3 20-SEP-23 4JJP 1 REMARK SEQADV REVDAT 2 15-NOV-17 4JJP 1 REMARK REVDAT 1 20-MAR-13 4JJP 0 JRNL AUTH A.S.HALAVATY,Z.WAWRZAK,O.ONOPRIYENKO,S.GRIMSHAW,A.SAVCHENKO, JRNL AUTH 2 W.F.ANDERSON JRNL TITL 2.06 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF JRNL TITL 2 PHOSPHOMETHYLPYRIMIDINE KINASE (THID)FROM CLOSTRIDIUM JRNL TITL 3 DIFFICILE 630 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 25359 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1345 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.06 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.11 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1718 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.2630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3427 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 147 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.24000 REMARK 3 B22 (A**2) : -0.77000 REMARK 3 B33 (A**2) : 4.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.222 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.174 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.140 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.056 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3574 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2421 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4840 ; 1.571 ; 2.013 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6040 ; 0.917 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 455 ; 3.521 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 119 ;33.322 ;26.471 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 680 ;10.474 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;13.858 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 588 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3814 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 590 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2263 ; 0.764 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 920 ; 0.196 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3692 ; 1.395 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1311 ; 2.279 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1148 ; 3.781 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 75 REMARK 3 ORIGIN FOR THE GROUP (A): 19.2709 4.5213 27.8089 REMARK 3 T TENSOR REMARK 3 T11: 0.0857 T22: 0.0622 REMARK 3 T33: 0.0790 T12: 0.0292 REMARK 3 T13: -0.0151 T23: 0.0402 REMARK 3 L TENSOR REMARK 3 L11: 3.9039 L22: 2.0964 REMARK 3 L33: 2.0787 L12: 0.4310 REMARK 3 L13: -0.6346 L23: 0.1040 REMARK 3 S TENSOR REMARK 3 S11: -0.0502 S12: 0.1055 S13: 0.0318 REMARK 3 S21: -0.0929 S22: 0.0324 S23: -0.0892 REMARK 3 S31: -0.0161 S32: 0.0423 S33: 0.0178 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 76 A 178 REMARK 3 ORIGIN FOR THE GROUP (A): 5.7098 14.6590 20.7478 REMARK 3 T TENSOR REMARK 3 T11: 0.0930 T22: 0.0790 REMARK 3 T33: 0.0032 T12: -0.0125 REMARK 3 T13: -0.0119 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 2.5476 L22: 3.0874 REMARK 3 L33: 1.0910 L12: -0.7333 REMARK 3 L13: -0.2825 L23: 0.0536 REMARK 3 S TENSOR REMARK 3 S11: 0.0321 S12: 0.0747 S13: 0.0122 REMARK 3 S21: -0.1131 S22: -0.0733 S23: 0.0265 REMARK 3 S31: -0.0792 S32: 0.0102 S33: 0.0412 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 179 A 201 REMARK 3 ORIGIN FOR THE GROUP (A): -3.4442 21.3191 32.2408 REMARK 3 T TENSOR REMARK 3 T11: 0.1912 T22: 0.1085 REMARK 3 T33: 0.1324 T12: 0.0465 REMARK 3 T13: 0.0359 T23: -0.0276 REMARK 3 L TENSOR REMARK 3 L11: 7.3615 L22: 5.8130 REMARK 3 L33: 4.3145 L12: 3.4367 REMARK 3 L13: 0.1294 L23: 0.0918 REMARK 3 S TENSOR REMARK 3 S11: 0.0099 S12: -0.4723 S13: 0.5030 REMARK 3 S21: 0.2890 S22: 0.0426 S23: 0.2859 REMARK 3 S31: -0.4808 S32: -0.0531 S33: -0.0525 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 212 A 245 REMARK 3 ORIGIN FOR THE GROUP (A): 3.8704 10.1058 38.8440 REMARK 3 T TENSOR REMARK 3 T11: 0.1424 T22: 0.1314 REMARK 3 T33: 0.0215 T12: 0.0321 REMARK 3 T13: 0.0072 T23: 0.0225 REMARK 3 L TENSOR REMARK 3 L11: 3.8458 L22: 5.7588 REMARK 3 L33: 4.3958 L12: -1.3166 REMARK 3 L13: 0.5298 L23: 1.3504 REMARK 3 S TENSOR REMARK 3 S11: -0.1286 S12: -0.4275 S13: 0.0906 REMARK 3 S21: 0.3980 S22: 0.2478 S23: -0.1443 REMARK 3 S31: -0.3546 S32: -0.0538 S33: -0.1192 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 6 B 74 REMARK 3 ORIGIN FOR THE GROUP (A): 28.5370 4.5721 32.5932 REMARK 3 T TENSOR REMARK 3 T11: 0.0694 T22: 0.0644 REMARK 3 T33: 0.0910 T12: 0.0381 REMARK 3 T13: -0.0047 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 4.5783 L22: 2.3805 REMARK 3 L33: 2.7900 L12: 0.3241 REMARK 3 L13: -0.2365 L23: 0.3881 REMARK 3 S TENSOR REMARK 3 S11: -0.0907 S12: -0.0256 S13: 0.1465 REMARK 3 S21: -0.0087 S22: 0.0559 S23: 0.0113 REMARK 3 S31: -0.0440 S32: 0.0434 S33: 0.0348 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 75 B 147 REMARK 3 ORIGIN FOR THE GROUP (A): 40.4999 -1.2675 37.3882 REMARK 3 T TENSOR REMARK 3 T11: 0.1080 T22: 0.1021 REMARK 3 T33: 0.0439 T12: 0.0076 REMARK 3 T13: 0.0114 T23: -0.0352 REMARK 3 L TENSOR REMARK 3 L11: 3.5854 L22: 2.7210 REMARK 3 L33: 2.0581 L12: -1.0851 REMARK 3 L13: -0.5264 L23: -1.4693 REMARK 3 S TENSOR REMARK 3 S11: -0.1014 S12: -0.2237 S13: 0.0030 REMARK 3 S21: -0.0179 S22: -0.0223 S23: -0.1755 REMARK 3 S31: 0.2312 S32: 0.0291 S33: 0.1237 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 148 B 221 REMARK 3 ORIGIN FOR THE GROUP (A): 38.6218 -10.9741 50.1335 REMARK 3 T TENSOR REMARK 3 T11: 0.2690 T22: 0.3657 REMARK 3 T33: 0.1003 T12: 0.0143 REMARK 3 T13: 0.0365 T23: 0.0954 REMARK 3 L TENSOR REMARK 3 L11: 7.5484 L22: 5.3704 REMARK 3 L33: 4.1902 L12: -1.2545 REMARK 3 L13: -1.1114 L23: -0.9805 REMARK 3 S TENSOR REMARK 3 S11: -0.0768 S12: -0.7679 S13: -0.7472 REMARK 3 S21: 0.1887 S22: -0.2822 S23: -0.1696 REMARK 3 S31: 0.5461 S32: 0.1741 S33: 0.3590 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 222 B 243 REMARK 3 ORIGIN FOR THE GROUP (A): 26.5114 -0.9904 53.4308 REMARK 3 T TENSOR REMARK 3 T11: 0.2817 T22: 0.6660 REMARK 3 T33: 0.1139 T12: 0.1585 REMARK 3 T13: 0.0831 T23: 0.0239 REMARK 3 L TENSOR REMARK 3 L11: 6.9780 L22: 16.2279 REMARK 3 L33: 7.1823 L12: 4.5090 REMARK 3 L13: -0.1396 L23: -0.6241 REMARK 3 S TENSOR REMARK 3 S11: -0.3043 S12: -1.5710 S13: -0.0157 REMARK 3 S21: 0.9150 S22: 0.8157 S23: 0.4937 REMARK 3 S31: 0.2026 S32: -0.1916 S33: -0.5114 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4JJP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000078131. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : BE-LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26751 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.57500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: PDB ENTRY 1UB0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 3.7 MG/ML CRYSTALLIZATION: REMARK 280 30% JEFFAMINE ED-2001, 0.1 M HEPES PH 7.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.37550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.43150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.87050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.43150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.37550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.87050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASN A 3 REMARK 465 TYR A 4 REMARK 465 ARG A 202 REMARK 465 ILE A 203 REMARK 465 ASP A 204 REMARK 465 LYS A 205 REMARK 465 LYS A 206 REMARK 465 ASN A 207 REMARK 465 THR A 208 REMARK 465 HIS A 209 REMARK 465 GLY A 210 REMARK 465 THR A 211 REMARK 465 ARG A 246 REMARK 465 SER A 247 REMARK 465 PHE A 248 REMARK 465 ASP A 249 REMARK 465 ILE A 250 REMARK 465 GLY A 251 REMARK 465 HIS A 252 REMARK 465 GLY A 253 REMARK 465 VAL A 254 REMARK 465 GLY A 255 REMARK 465 PRO A 256 REMARK 465 VAL A 257 REMARK 465 HIS A 258 REMARK 465 HIS A 259 REMARK 465 PHE A 260 REMARK 465 TYR A 261 REMARK 465 LYS A 262 REMARK 465 PHE A 263 REMARK 465 GLU A 264 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASN B 3 REMARK 465 TYR B 4 REMARK 465 LYS B 5 REMARK 465 SER B 112 REMARK 465 LYS B 113 REMARK 465 SER B 114 REMARK 465 GLY B 115 REMARK 465 TYR B 116 REMARK 465 HIS B 180 REMARK 465 LEU B 181 REMARK 465 ASP B 182 REMARK 465 GLY B 183 REMARK 465 GLU B 184 REMARK 465 GLU B 201 REMARK 465 ARG B 202 REMARK 465 ILE B 203 REMARK 465 ASP B 204 REMARK 465 LYS B 205 REMARK 465 LYS B 206 REMARK 465 ASN B 207 REMARK 465 THR B 208 REMARK 465 HIS B 209 REMARK 465 GLY B 210 REMARK 465 THR B 211 REMARK 465 ILE B 244 REMARK 465 LYS B 245 REMARK 465 ARG B 246 REMARK 465 SER B 247 REMARK 465 PHE B 248 REMARK 465 ASP B 249 REMARK 465 ILE B 250 REMARK 465 GLY B 251 REMARK 465 HIS B 252 REMARK 465 GLY B 253 REMARK 465 VAL B 254 REMARK 465 GLY B 255 REMARK 465 PRO B 256 REMARK 465 VAL B 257 REMARK 465 HIS B 258 REMARK 465 HIS B 259 REMARK 465 PHE B 260 REMARK 465 TYR B 261 REMARK 465 LYS B 262 REMARK 465 PHE B 263 REMARK 465 GLU B 264 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 72 -133.20 -118.20 REMARK 500 MET A 110 -32.80 -138.33 REMARK 500 ILE A 244 -6.56 -57.09 REMARK 500 ALA B 53 139.58 -177.48 REMARK 500 ASP B 72 -87.12 -113.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP05735 RELATED DB: TARGETTRACK DBREF 4JJP A 1 264 UNP Q186F5 Q186F5_CLOD6 1 264 DBREF 4JJP B 1 264 UNP Q186F5 Q186F5_CLOD6 1 264 SEQADV 4JJP SER A -2 UNP Q186F5 EXPRESSION TAG SEQADV 4JJP ASN A -1 UNP Q186F5 EXPRESSION TAG SEQADV 4JJP ALA A 0 UNP Q186F5 EXPRESSION TAG SEQADV 4JJP SER B -2 UNP Q186F5 EXPRESSION TAG SEQADV 4JJP ASN B -1 UNP Q186F5 EXPRESSION TAG SEQADV 4JJP ALA B 0 UNP Q186F5 EXPRESSION TAG SEQRES 1 A 267 SER ASN ALA MET SER ASN TYR LYS ILE PRO THR LEU THR SEQRES 2 A 267 ILE ALA GLY SER ASP SER SER GLY GLY ALA GLY ILE GLN SEQRES 3 A 267 ALA ASP LEU LYS THR PHE SER ALA ILE GLY THR TYR GLY SEQRES 4 A 267 MET SER VAL ILE THR ALA ILE THR ALA GLN ASN THR LYS SEQRES 5 A 267 GLY VAL PHE ALA VAL GLU ASP LEU ASN LYS LYS ILE ILE SEQRES 6 A 267 LYS LYS GLN ILE GLU ALA VAL PHE GLU ASP ILE PRO PRO SEQRES 7 A 267 ARG ALA VAL LYS ILE GLY MET VAL SER SER PRO GLU ILE SEQRES 8 A 267 ILE LEU GLU ILE VAL GLU ASN LEU LYS LYS TYR ASN PRO SEQRES 9 A 267 LYS TYR LEU VAL VAL ASP PRO VAL MET ILE SER LYS SER SEQRES 10 A 267 GLY TYR TYR LEU LEU LYS PRO GLU ALA LYS GLU ASN LEU SEQRES 11 A 267 ILE LYS TYR LEU ILE PRO LEU ALA TYR ILE ILE THR PRO SEQRES 12 A 267 ASN ILE PRO GLU ALA GLU GLU ILE THR GLY ILE LYS ILE SEQRES 13 A 267 HIS ASN VAL ASP ASP MET LYS ARG VAL GLY GLU GLU ILE SEQRES 14 A 267 LEU GLN LEU GLY PRO LYS PHE VAL LEU MET LYS GLY GLY SEQRES 15 A 267 HIS LEU ASP GLY GLU ALA VAL ASP ILE LEU VAL GLY LYS SEQRES 16 A 267 ASN ILE PHE LYS VAL TYR LYS SER GLU ARG ILE ASP LYS SEQRES 17 A 267 LYS ASN THR HIS GLY THR GLY CYS THR LEU SER SER ALA SEQRES 18 A 267 ILE THR SER TYR LEU ALA LEU GLY TYR GLU ILE THR GLU SEQRES 19 A 267 ALA VAL ASN LEU SER LYS ILE TYR ILE THR GLU ALA ILE SEQRES 20 A 267 LYS ARG SER PHE ASP ILE GLY HIS GLY VAL GLY PRO VAL SEQRES 21 A 267 HIS HIS PHE TYR LYS PHE GLU SEQRES 1 B 267 SER ASN ALA MET SER ASN TYR LYS ILE PRO THR LEU THR SEQRES 2 B 267 ILE ALA GLY SER ASP SER SER GLY GLY ALA GLY ILE GLN SEQRES 3 B 267 ALA ASP LEU LYS THR PHE SER ALA ILE GLY THR TYR GLY SEQRES 4 B 267 MET SER VAL ILE THR ALA ILE THR ALA GLN ASN THR LYS SEQRES 5 B 267 GLY VAL PHE ALA VAL GLU ASP LEU ASN LYS LYS ILE ILE SEQRES 6 B 267 LYS LYS GLN ILE GLU ALA VAL PHE GLU ASP ILE PRO PRO SEQRES 7 B 267 ARG ALA VAL LYS ILE GLY MET VAL SER SER PRO GLU ILE SEQRES 8 B 267 ILE LEU GLU ILE VAL GLU ASN LEU LYS LYS TYR ASN PRO SEQRES 9 B 267 LYS TYR LEU VAL VAL ASP PRO VAL MET ILE SER LYS SER SEQRES 10 B 267 GLY TYR TYR LEU LEU LYS PRO GLU ALA LYS GLU ASN LEU SEQRES 11 B 267 ILE LYS TYR LEU ILE PRO LEU ALA TYR ILE ILE THR PRO SEQRES 12 B 267 ASN ILE PRO GLU ALA GLU GLU ILE THR GLY ILE LYS ILE SEQRES 13 B 267 HIS ASN VAL ASP ASP MET LYS ARG VAL GLY GLU GLU ILE SEQRES 14 B 267 LEU GLN LEU GLY PRO LYS PHE VAL LEU MET LYS GLY GLY SEQRES 15 B 267 HIS LEU ASP GLY GLU ALA VAL ASP ILE LEU VAL GLY LYS SEQRES 16 B 267 ASN ILE PHE LYS VAL TYR LYS SER GLU ARG ILE ASP LYS SEQRES 17 B 267 LYS ASN THR HIS GLY THR GLY CYS THR LEU SER SER ALA SEQRES 18 B 267 ILE THR SER TYR LEU ALA LEU GLY TYR GLU ILE THR GLU SEQRES 19 B 267 ALA VAL ASN LEU SER LYS ILE TYR ILE THR GLU ALA ILE SEQRES 20 B 267 LYS ARG SER PHE ASP ILE GLY HIS GLY VAL GLY PRO VAL SEQRES 21 B 267 HIS HIS PHE TYR LYS PHE GLU HET EPE B 301 30 HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN EPE HEPES FORMUL 3 EPE C8 H18 N2 O4 S FORMUL 4 HOH *147(H2 O) HELIX 1 1 ALA A 20 GLY A 33 1 14 HELIX 2 2 ASN A 58 GLU A 71 1 14 HELIX 3 3 SER A 85 ASN A 100 1 16 HELIX 4 4 LYS A 120 LEU A 131 1 12 HELIX 5 5 ILE A 132 ALA A 135 5 4 HELIX 6 6 ASN A 141 GLY A 150 1 10 HELIX 7 7 ASN A 155 GLN A 168 1 14 HELIX 8 8 CYS A 213 LEU A 225 1 13 HELIX 9 9 GLU A 228 ILE A 244 1 17 HELIX 10 10 ALA B 20 GLY B 33 1 14 HELIX 11 11 ASN B 58 GLU B 71 1 14 HELIX 12 12 SER B 85 ASN B 100 1 16 HELIX 13 13 LYS B 120 TYR B 130 1 11 HELIX 14 14 LEU B 131 ALA B 135 5 5 HELIX 15 15 ASN B 141 GLY B 150 1 10 HELIX 16 16 ASN B 155 GLN B 168 1 14 HELIX 17 17 CYS B 213 LEU B 225 1 13 HELIX 18 18 GLU B 228 ALA B 243 1 16 SHEET 1 A 9 GLY A 50 ASP A 56 0 SHEET 2 A 9 TYR A 35 ASN A 47 -1 N ILE A 43 O GLU A 55 SHEET 3 A 9 PRO A 7 ASP A 15 1 N SER A 14 O ALA A 42 SHEET 4 A 9 ALA A 77 ILE A 80 1 O LYS A 79 N LEU A 9 SHEET 5 A 9 LEU A 104 VAL A 106 1 O VAL A 105 N VAL A 78 SHEET 6 A 9 ILE A 137 ILE A 138 1 O ILE A 137 N VAL A 106 SHEET 7 A 9 PHE A 173 MET A 176 1 O LEU A 175 N ILE A 138 SHEET 8 A 9 ASP A 187 GLY A 191 -1 O ILE A 188 N MET A 176 SHEET 9 A 9 ILE A 194 TYR A 198 -1 O TYR A 198 N ASP A 187 SHEET 1 B 9 GLY B 50 ASP B 56 0 SHEET 2 B 9 TYR B 35 ASN B 47 -1 N ILE B 43 O GLU B 55 SHEET 3 B 9 PRO B 7 ASP B 15 1 N SER B 14 O ALA B 42 SHEET 4 B 9 ALA B 77 ILE B 80 1 O LYS B 79 N ILE B 11 SHEET 5 B 9 TYR B 103 VAL B 106 1 O VAL B 105 N VAL B 78 SHEET 6 B 9 ILE B 137 ILE B 138 1 O ILE B 137 N VAL B 106 SHEET 7 B 9 PHE B 173 LYS B 177 1 O LEU B 175 N ILE B 138 SHEET 8 B 9 VAL B 186 GLY B 191 -1 O ILE B 188 N MET B 176 SHEET 9 B 9 ILE B 194 LYS B 199 -1 O TYR B 198 N ASP B 187 SITE 1 AC1 9 LYS A 49 GLY A 50 VAL A 51 PHE A 52 SITE 2 AC1 9 LYS B 49 GLY B 50 VAL B 51 PHE B 52 SITE 3 AC1 9 HOH B 456 CRYST1 56.751 79.741 92.863 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017621 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012541 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010769 0.00000