data_4JK6 # _entry.id 4JK6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.382 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4JK6 pdb_00004jk6 10.2210/pdb4jk6/pdb RCSB RCSB078148 ? ? WWPDB D_1000078148 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4GLY 'Human urokinase-type plasminogen activator uPA in complex with the two-disulfide brige peptide UK504' unspecified PDB 3QN7 'Human urokinase-type Plasminogen Activator (uPA) in complex with a bicyclic peptide inhibitor (UK18)' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4JK6 _pdbx_database_status.recvd_initial_deposition_date 2013-03-09 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Buth, S.A.' 1 'Leiman, P.G.' 2 'Chen, S.' 3 'Heinis, C.' 4 # _citation.id primary _citation.title 'Improving binding affinity and stability of Peptide ligands by substituting glycines with d-amino acids.' _citation.journal_abbrev Chembiochem _citation.journal_volume 14 _citation.page_first 1316 _citation.page_last 1322 _citation.year 2013 _citation.journal_id_ASTM ? _citation.country GE _citation.journal_id_ISSN 1439-4227 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23828687 _citation.pdbx_database_id_DOI 10.1002/cbic.201300228 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chen, S.' 1 ? primary 'Gfeller, D.' 2 ? primary 'Buth, S.A.' 3 ? primary 'Michielin, O.' 4 ? primary 'Leiman, P.G.' 5 ? primary 'Heinis, C.' 6 ? # _cell.entry_id 4JK6 _cell.length_a 121.219 _cell.length_b 121.219 _cell.length_c 42.731 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4JK6 _symmetry.space_group_name_H-M 'H 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Urokinase-type plasminogen activator' 27586.420 1 3.4.21.73 'C299A, N322Q' 'Catalytic domain' ? 2 polymer syn 'bicyclic peptide UK18-D-Aba inhibitor of uPA' 1819.058 1 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 4 ? ? ? ? 4 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 5 non-polymer syn 'HEXAETHYLENE GLYCOL' 282.331 1 ? ? ? ? 6 non-polymer syn '1,3,5-tris(bromomethyl)benzene' 356.880 1 ? ? ? ? 7 water nat water 18.015 110 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;U-plasminogen activator, uPA, Urokinase-type plasminogen activator long chain A, Urokinase-type plasminogen activator short chain A, Urokinase-type plasminogen activator chain B ; # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVEN LILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTIALPSMYNDPQFGTSCEITGFGKEQSTDYLYPEQLKMTVVK LISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPW IRSHT ; ;IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVEN LILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTIALPSMYNDPQFGTSCEITGFGKEQSTDYLYPEQLKMTVVK LISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPW IRSHT ; A ? 2 'polypeptide(L)' no yes 'ACSRYEVDCRGR(DBB)SACG(NH2)' ACSRYEVDCRGRTSACGX B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ILE n 1 2 ILE n 1 3 GLY n 1 4 GLY n 1 5 GLU n 1 6 PHE n 1 7 THR n 1 8 THR n 1 9 ILE n 1 10 GLU n 1 11 ASN n 1 12 GLN n 1 13 PRO n 1 14 TRP n 1 15 PHE n 1 16 ALA n 1 17 ALA n 1 18 ILE n 1 19 TYR n 1 20 ARG n 1 21 ARG n 1 22 HIS n 1 23 ARG n 1 24 GLY n 1 25 GLY n 1 26 SER n 1 27 VAL n 1 28 THR n 1 29 TYR n 1 30 VAL n 1 31 CYS n 1 32 GLY n 1 33 GLY n 1 34 SER n 1 35 LEU n 1 36 ILE n 1 37 SER n 1 38 PRO n 1 39 CYS n 1 40 TRP n 1 41 VAL n 1 42 ILE n 1 43 SER n 1 44 ALA n 1 45 THR n 1 46 HIS n 1 47 CYS n 1 48 PHE n 1 49 ILE n 1 50 ASP n 1 51 TYR n 1 52 PRO n 1 53 LYS n 1 54 LYS n 1 55 GLU n 1 56 ASP n 1 57 TYR n 1 58 ILE n 1 59 VAL n 1 60 TYR n 1 61 LEU n 1 62 GLY n 1 63 ARG n 1 64 SER n 1 65 ARG n 1 66 LEU n 1 67 ASN n 1 68 SER n 1 69 ASN n 1 70 THR n 1 71 GLN n 1 72 GLY n 1 73 GLU n 1 74 MET n 1 75 LYS n 1 76 PHE n 1 77 GLU n 1 78 VAL n 1 79 GLU n 1 80 ASN n 1 81 LEU n 1 82 ILE n 1 83 LEU n 1 84 HIS n 1 85 LYS n 1 86 ASP n 1 87 TYR n 1 88 SER n 1 89 ALA n 1 90 ASP n 1 91 THR n 1 92 LEU n 1 93 ALA n 1 94 HIS n 1 95 HIS n 1 96 ASN n 1 97 ASP n 1 98 ILE n 1 99 ALA n 1 100 LEU n 1 101 LEU n 1 102 LYS n 1 103 ILE n 1 104 ARG n 1 105 SER n 1 106 LYS n 1 107 GLU n 1 108 GLY n 1 109 ARG n 1 110 CYS n 1 111 ALA n 1 112 GLN n 1 113 PRO n 1 114 SER n 1 115 ARG n 1 116 THR n 1 117 ILE n 1 118 GLN n 1 119 THR n 1 120 ILE n 1 121 ALA n 1 122 LEU n 1 123 PRO n 1 124 SER n 1 125 MET n 1 126 TYR n 1 127 ASN n 1 128 ASP n 1 129 PRO n 1 130 GLN n 1 131 PHE n 1 132 GLY n 1 133 THR n 1 134 SER n 1 135 CYS n 1 136 GLU n 1 137 ILE n 1 138 THR n 1 139 GLY n 1 140 PHE n 1 141 GLY n 1 142 LYS n 1 143 GLU n 1 144 GLN n 1 145 SER n 1 146 THR n 1 147 ASP n 1 148 TYR n 1 149 LEU n 1 150 TYR n 1 151 PRO n 1 152 GLU n 1 153 GLN n 1 154 LEU n 1 155 LYS n 1 156 MET n 1 157 THR n 1 158 VAL n 1 159 VAL n 1 160 LYS n 1 161 LEU n 1 162 ILE n 1 163 SER n 1 164 HIS n 1 165 ARG n 1 166 GLU n 1 167 CYS n 1 168 GLN n 1 169 GLN n 1 170 PRO n 1 171 HIS n 1 172 TYR n 1 173 TYR n 1 174 GLY n 1 175 SER n 1 176 GLU n 1 177 VAL n 1 178 THR n 1 179 THR n 1 180 LYS n 1 181 MET n 1 182 LEU n 1 183 CYS n 1 184 ALA n 1 185 ALA n 1 186 ASP n 1 187 PRO n 1 188 GLN n 1 189 TRP n 1 190 LYS n 1 191 THR n 1 192 ASP n 1 193 SER n 1 194 CYS n 1 195 GLN n 1 196 GLY n 1 197 ASP n 1 198 SER n 1 199 GLY n 1 200 GLY n 1 201 PRO n 1 202 LEU n 1 203 VAL n 1 204 CYS n 1 205 SER n 1 206 LEU n 1 207 GLN n 1 208 GLY n 1 209 ARG n 1 210 MET n 1 211 THR n 1 212 LEU n 1 213 THR n 1 214 GLY n 1 215 ILE n 1 216 VAL n 1 217 SER n 1 218 TRP n 1 219 GLY n 1 220 ARG n 1 221 GLY n 1 222 CYS n 1 223 ALA n 1 224 LEU n 1 225 LYS n 1 226 ASP n 1 227 LYS n 1 228 PRO n 1 229 GLY n 1 230 VAL n 1 231 TYR n 1 232 THR n 1 233 ARG n 1 234 VAL n 1 235 SER n 1 236 HIS n 1 237 PHE n 1 238 LEU n 1 239 PRO n 1 240 TRP n 1 241 ILE n 1 242 ARG n 1 243 SER n 1 244 HIS n 1 245 THR n 2 1 ALA n 2 2 CYS n 2 3 SER n 2 4 ARG n 2 5 TYR n 2 6 GLU n 2 7 VAL n 2 8 ASP n 2 9 CYS n 2 10 ARG n 2 11 GLY n 2 12 ARG n 2 13 DBB n 2 14 SER n 2 15 ALA n 2 16 CYS n 2 17 GLY n 2 18 NH2 n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene PLAU _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 9606 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name human _entity_src_gen.pdbx_host_org_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 9606 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line HEK-293 _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pSecTagA _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP UROK_HUMAN P00749 1 ;IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVEN LILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVK LISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPW IRSHT ; 179 ? 2 PDB 4JK6 4JK6 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4JK6 A 1 ? 245 ? P00749 179 ? 423 ? 16 242 2 2 4JK6 B 1 ? 18 ? 4JK6 1 ? 18 ? 1 18 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4JK6 ALA A 121 ? UNP P00749 CYS 299 'engineered mutation' 122 1 1 4JK6 GLN A 144 ? UNP P00749 ASN 322 'engineered mutation' 145 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DBB 'D-peptide linking' . 'D-ALPHA-AMINOBUTYRIC ACID' ? 'C4 H9 N O2' 103.120 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 P6G non-polymer . 'HEXAETHYLENE GLYCOL' 'POLYETHYLENE GLYCOL PEG400' 'C12 H26 O7' 282.331 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZBR non-polymer . '1,3,5-tris(bromomethyl)benzene' ? 'C9 H9 Br3' 356.880 # _exptl.entry_id 4JK6 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.05 _exptl_crystal.density_percent_sol 40.14 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.9 _exptl_crystal_grow.pdbx_details '50mM Na3(cit) pH 4.9, 5% v/v PEG400, 1.8M (NH4)2SO4, 0.05% NaN3, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 2M' _diffrn_detector.pdbx_collection_date 2012-06-01 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Bartels Monochromator with dual channel cut crystals (DCCM) in (+--+) geometry and a toroidal mirror (M2)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X06DA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X06DA _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 4JK6 _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 33.16 _reflns.d_resolution_high 2.2 _reflns.number_obs 11879 _reflns.number_all 11881 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.094 _reflns.pdbx_Rsym_value 0.048 _reflns.pdbx_netI_over_sigmaI 10.7 _reflns.B_iso_Wilson_estimate 30.0 _reflns.pdbx_redundancy 4.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.20 _reflns_shell.d_res_low 2.27 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.438 _reflns_shell.pdbx_Rsym_value 0.308 _reflns_shell.meanI_over_sigI_obs 3.7 _reflns_shell.pdbx_redundancy 4.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1037 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4JK6 _refine.ls_number_reflns_obs 11311 _refine.ls_number_reflns_all 11881 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 33.16 _refine.ls_d_res_high 2.20 _refine.ls_percent_reflns_obs 99.91 _refine.ls_R_factor_obs 0.15586 _refine.ls_R_factor_all 0.15586 _refine.ls_R_factor_R_work 0.15343 _refine.ls_R_factor_R_free 0.20526 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.7 _refine.ls_number_reflns_R_free 564 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.968 _refine.correlation_coeff_Fo_to_Fc_free 0.945 _refine.B_iso_mean 40.333 _refine.aniso_B[1][1] -0.47 _refine.aniso_B[2][2] -0.47 _refine.aniso_B[3][3] 1.54 _refine.aniso_B[1][2] -0.47 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] -0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 2NWN' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.333 _refine.pdbx_overall_ESU_R_Free 0.204 _refine.overall_SU_ML 0.150 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 11.095 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2058 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 49 _refine_hist.number_atoms_solvent 110 _refine_hist.number_atoms_total 2217 _refine_hist.d_res_high 2.20 _refine_hist.d_res_low 33.16 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.016 0.019 ? 2176 ? 'X-RAY DIFFRACTION' r_bond_other_d 0.001 0.020 ? 2004 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.845 1.968 ? 2949 ? 'X-RAY DIFFRACTION' r_angle_other_deg 0.851 3.006 ? 4611 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 7.373 5.000 ? 264 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 31.345 22.979 ? 94 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 16.461 15.014 ? 358 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 21.272 15.000 ? 16 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.096 0.200 ? 313 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.009 0.021 ? 2426 ? 'X-RAY DIFFRACTION' r_gen_planes_other 0.001 0.020 ? 505 ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.200 _refine_ls_shell.d_res_low 2.257 _refine_ls_shell.number_reflns_R_work 853 _refine_ls_shell.R_factor_R_work 0.255 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.311 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 43 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 896 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4JK6 _struct.title 'Human urokinase-type Plasminogen Activator (uPA) in complex with a bicyclic peptide inhibitor (UK18-D-Aba)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4JK6 _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE INHIBITOR' _struct_keywords.text ;serine protease, chymotrypsin fold, urokinase-type plasminogen activator, bicyclic peptide inhibitor, D-amino acids, HYDROLASE-HYDROLASE INHIBITOR complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 5 ? I N N 6 ? J N N 7 ? K N N 7 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 8 ? GLN A 12 ? THR A 23 GLN A 27 5 ? 5 HELX_P HELX_P2 2 ALA A 44 ? PHE A 48 ? ALA A 55 PHE A 59 5 ? 5 HELX_P HELX_P3 3 LYS A 53 ? GLU A 55 A LYS A 61 GLU A 62 5 ? 3 HELX_P HELX_P4 4 SER A 163 ? GLN A 168 ? SER A 164 GLN A 169 1 ? 6 HELX_P HELX_P5 5 TYR A 173 ? VAL A 177 ? TYR A 172 VAL A 176 5 ? 5 HELX_P HELX_P6 6 PHE A 237 ? THR A 245 ? PHE A 234 THR A 242 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 31 SG ? ? ? 1_555 A CYS 47 SG ? ? A CYS 42 A CYS 58 1_555 ? ? ? ? ? ? ? 2.083 ? ? disulf2 disulf ? ? A CYS 39 SG ? ? ? 1_555 A CYS 110 SG ? ? A CYS 50 A CYS 111 1_555 ? ? ? ? ? ? ? 2.036 ? ? disulf3 disulf ? ? A CYS 135 SG ? ? ? 1_555 A CYS 204 SG ? ? A CYS 136 A CYS 201 1_555 ? ? ? ? ? ? ? 2.062 ? ? disulf4 disulf ? ? A CYS 167 SG ? ? ? 1_555 A CYS 183 SG ? ? A CYS 168 A CYS 182 1_555 ? ? ? ? ? ? ? 2.048 ? ? disulf5 disulf ? ? A CYS 194 SG ? ? ? 1_555 A CYS 222 SG ? ? A CYS 191 A CYS 220 1_555 ? ? ? ? ? ? ? 2.140 ? ? covale1 covale one ? B CYS 2 SG ? ? ? 1_555 I ZBR . C8 ? ? B CYS 2 B ZBR 101 1_555 ? ? ? ? ? ? ? 1.838 ? ? covale2 covale one ? B CYS 9 SG ? ? ? 1_555 I ZBR . C7 ? ? B CYS 9 B ZBR 101 1_555 ? ? ? ? ? ? ? 1.876 ? ? covale3 covale both ? B ARG 12 C ? ? ? 1_555 B DBB 13 N ? ? B ARG 12 B DBB 13 1_555 ? ? ? ? ? ? ? 1.321 sing ? covale4 covale both ? B DBB 13 C ? ? ? 1_555 B SER 14 N ? ? B DBB 13 B SER 14 1_555 ? ? ? ? ? ? ? 1.332 sing ? covale5 covale one ? B CYS 16 SG ? ? ? 1_555 I ZBR . C9 ? ? B CYS 16 B ZBR 101 1_555 ? ? ? ? ? ? ? 1.838 ? ? covale6 covale both ? B GLY 17 C ? ? ? 1_555 B NH2 18 N ? ? B GLY 17 B NH2 18 1_555 ? ? ? ? ? ? ? 1.332 sing ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 8 ? B ? 7 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 5 ? PHE A 6 ? GLU A 20 PHE A 21 A 2 LYS A 155 ? ILE A 162 ? LYS A 156 ILE A 163 A 3 MET A 181 ? ALA A 185 ? MET A 180 ALA A 184 A 4 GLY A 229 ? ARG A 233 ? GLY A 226 ARG A 230 A 5 MET A 210 ? TRP A 218 ? MET A 207 TRP A 215 A 6 PRO A 201 ? SER A 205 ? PRO A 198 SER A 202 A 7 SER A 134 ? GLY A 139 ? SER A 135 GLY A 140 A 8 LYS A 155 ? ILE A 162 ? LYS A 156 ILE A 163 B 1 PHE A 15 ? ARG A 21 ? PHE A 30 ARG A 36 B 2 VAL A 27 ? SER A 37 ? VAL A 38 SER A 48 B 3 TRP A 40 ? SER A 43 ? TRP A 51 SER A 54 B 4 ALA A 99 ? ARG A 104 ? ALA A 104 ARG A 109 B 5 MET A 74 ? LEU A 83 ? MET A 81 LEU A 90 B 6 TYR A 57 ? LEU A 61 ? TYR A 64 LEU A 68 B 7 PHE A 15 ? ARG A 21 ? PHE A 30 ARG A 36 C 1 SER A 88 ? ALA A 89 ? SER A 95 ALA A 96 C 2 HIS A 94 ? HIS A 95 ? HIS A 99 HIS A 100 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 5 ? N GLU A 20 O MET A 156 ? O MET A 157 A 2 3 N ILE A 162 ? N ILE A 163 O CYS A 183 ? O CYS A 182 A 3 4 N LEU A 182 ? N LEU A 181 O TYR A 231 ? O TYR A 228 A 4 5 O THR A 232 ? O THR A 229 N ILE A 215 ? N ILE A 212 A 5 6 O THR A 211 ? O THR A 208 N CYS A 204 ? N CYS A 201 A 6 7 O VAL A 203 ? O VAL A 200 N GLU A 136 ? N GLU A 137 A 7 8 N CYS A 135 ? N CYS A 136 O VAL A 159 ? O VAL A 160 B 1 2 N ILE A 18 ? N ILE A 33 O VAL A 30 ? O VAL A 41 B 2 3 N SER A 34 ? N SER A 45 O ILE A 42 ? O ILE A 53 B 3 4 N VAL A 41 ? N VAL A 52 O LEU A 101 ? O LEU A 106 B 4 5 O LEU A 100 ? O LEU A 105 N ILE A 82 ? N ILE A 89 B 5 6 O PHE A 76 ? O PHE A 83 N VAL A 59 ? N VAL A 66 B 6 7 O ILE A 58 ? O ILE A 65 N TYR A 19 ? N TYR A 34 C 1 2 N SER A 88 ? N SER A 95 O HIS A 95 ? O HIS A 100 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 301 ? 3 'BINDING SITE FOR RESIDUE SO4 A 301' AC2 Software A SO4 302 ? 5 'BINDING SITE FOR RESIDUE SO4 A 302' AC3 Software A SO4 303 ? 6 'BINDING SITE FOR RESIDUE SO4 A 303' AC4 Software A SO4 304 ? 6 'BINDING SITE FOR RESIDUE SO4 A 304' AC5 Software A CL 305 ? 4 'BINDING SITE FOR RESIDUE CL A 305' AC6 Software A P6G 306 ? 4 'BINDING SITE FOR RESIDUE P6G A 306' AC7 Software ? ? ? ? 33 'BINDING SITE FOR CHAIN B OF BICYCLIC PEPTIDE UK18-D-ABA INHIBITOR OF UPA' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 HIS A 22 ? HIS A 37 . ? 1_555 ? 2 AC1 3 ARG A 23 A ARG A 37 . ? 1_555 ? 3 AC1 3 TYR B 5 ? TYR B 5 . ? 1_555 ? 4 AC2 5 SER A 68 ? SER A 75 . ? 1_555 ? 5 AC2 5 ASN A 69 ? ASN A 76 . ? 1_555 ? 6 AC2 5 ARG A 209 ? ARG A 206 . ? 8_664 ? 7 AC2 5 HOH J . ? HOH A 450 . ? 1_555 ? 8 AC2 5 HOH J . ? HOH A 455 . ? 8_664 ? 9 AC3 6 PHE A 6 ? PHE A 21 . ? 1_555 ? 10 AC3 6 THR A 8 ? THR A 23 . ? 8_664 ? 11 AC3 6 SER A 114 ? SER A 115 . ? 6_464 ? 12 AC3 6 ARG A 115 ? ARG A 116 . ? 6_464 ? 13 AC3 6 HOH J . ? HOH A 430 . ? 1_555 ? 14 AC3 6 HOH J . ? HOH A 470 . ? 8_664 ? 15 AC4 6 LYS A 54 ? LYS A 62 . ? 5_674 ? 16 AC4 6 LEU A 81 ? LEU A 88 . ? 5_674 ? 17 AC4 6 GLN A 169 ? GLN A 170 . ? 1_555 ? 18 AC4 6 PRO A 170 A PRO A 170 . ? 1_555 ? 19 AC4 6 HIS A 171 B HIS A 170 . ? 1_555 ? 20 AC4 6 HOH J . ? HOH A 469 . ? 1_555 ? 21 AC5 4 LEU A 83 ? LEU A 90 . ? 1_555 ? 22 AC5 4 HIS A 84 ? HIS A 91 . ? 1_555 ? 23 AC5 4 LYS A 85 ? LYS A 92 . ? 1_555 ? 24 AC5 4 TRP A 240 ? TRP A 237 . ? 1_555 ? 25 AC6 4 ASN A 67 ? ASN A 74 . ? 1_555 ? 26 AC6 4 LEU A 149 ? LEU A 150 . ? 1_555 ? 27 AC6 4 SER A 205 ? SER A 202 . ? 8_664 ? 28 AC6 4 HOH J . ? HOH A 436 . ? 8_664 ? 29 AC7 33 ARG A 20 ? ARG A 35 . ? 1_555 ? 30 AC7 33 HIS A 22 ? HIS A 37 . ? 1_555 ? 31 AC7 33 SER A 26 D SER A 37 . ? 1_555 ? 32 AC7 33 THR A 28 ? THR A 39 . ? 1_555 ? 33 AC7 33 TYR A 29 ? TYR A 40 . ? 1_555 ? 34 AC7 33 VAL A 30 ? VAL A 41 . ? 1_555 ? 35 AC7 33 CYS A 31 ? CYS A 42 . ? 1_555 ? 36 AC7 33 HIS A 46 ? HIS A 57 . ? 1_555 ? 37 AC7 33 ILE A 49 ? ILE A 60 . ? 1_555 ? 38 AC7 33 ASP A 50 A ASP A 60 . ? 1_555 ? 39 AC7 33 TYR A 51 B TYR A 60 . ? 1_555 ? 40 AC7 33 HIS A 94 ? HIS A 99 . ? 1_555 ? 41 AC7 33 TYR A 126 ? TYR A 127 . ? 9_464 ? 42 AC7 33 TYR A 150 ? TYR A 151 . ? 1_555 ? 43 AC7 33 ARG A 165 ? ARG A 166 . ? 9_464 ? 44 AC7 33 THR A 179 ? THR A 178 . ? 9_464 ? 45 AC7 33 ASP A 192 ? ASP A 189 . ? 1_555 ? 46 AC7 33 SER A 193 ? SER A 190 . ? 1_555 ? 47 AC7 33 GLN A 195 ? GLN A 192 . ? 1_555 ? 48 AC7 33 GLY A 196 ? GLY A 193 . ? 1_555 ? 49 AC7 33 SER A 198 ? SER A 195 . ? 1_555 ? 50 AC7 33 GLY A 219 ? GLY A 216 . ? 1_555 ? 51 AC7 33 GLY A 221 ? GLY A 218 . ? 1_555 ? 52 AC7 33 CYS A 222 ? CYS A 220 . ? 1_555 ? 53 AC7 33 GLY A 229 ? GLY A 226 . ? 1_555 ? 54 AC7 33 SO4 C . ? SO4 A 301 . ? 1_555 ? 55 AC7 33 HOH J . ? HOH A 444 . ? 1_555 ? 56 AC7 33 HOH J . ? HOH A 466 . ? 9_464 ? 57 AC7 33 HOH J . ? HOH A 475 . ? 1_555 ? 58 AC7 33 HOH K . ? HOH B 201 . ? 1_555 ? 59 AC7 33 HOH K . ? HOH B 202 . ? 1_555 ? 60 AC7 33 HOH K . ? HOH B 203 . ? 1_555 ? 61 AC7 33 HOH K . ? HOH B 205 . ? 1_555 ? # _database_PDB_matrix.entry_id 4JK6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4JK6 _atom_sites.fract_transf_matrix[1][1] 0.008250 _atom_sites.fract_transf_matrix[1][2] 0.004763 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009526 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023402 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ILE 1 16 16 ILE ILE A . n A 1 2 ILE 2 17 17 ILE ILE A . n A 1 3 GLY 3 18 18 GLY GLY A . n A 1 4 GLY 4 19 19 GLY GLY A . n A 1 5 GLU 5 20 20 GLU GLU A . n A 1 6 PHE 6 21 21 PHE PHE A . n A 1 7 THR 7 22 22 THR THR A . n A 1 8 THR 8 23 23 THR THR A . n A 1 9 ILE 9 24 24 ILE ILE A . n A 1 10 GLU 10 25 25 GLU GLU A . n A 1 11 ASN 11 26 26 ASN ASN A . n A 1 12 GLN 12 27 27 GLN GLN A . n A 1 13 PRO 13 28 28 PRO PRO A . n A 1 14 TRP 14 29 29 TRP TRP A . n A 1 15 PHE 15 30 30 PHE PHE A . n A 1 16 ALA 16 31 31 ALA ALA A . n A 1 17 ALA 17 32 32 ALA ALA A . n A 1 18 ILE 18 33 33 ILE ILE A . n A 1 19 TYR 19 34 34 TYR TYR A . n A 1 20 ARG 20 35 35 ARG ARG A . n A 1 21 ARG 21 36 36 ARG ARG A . n A 1 22 HIS 22 37 37 HIS HIS A . n A 1 23 ARG 23 37 37 ARG ARG A A n A 1 24 GLY 24 37 37 GLY GLY A B n A 1 25 GLY 25 37 37 GLY GLY A C n A 1 26 SER 26 37 37 SER SER A D n A 1 27 VAL 27 38 38 VAL VAL A . n A 1 28 THR 28 39 39 THR THR A . n A 1 29 TYR 29 40 40 TYR TYR A . n A 1 30 VAL 30 41 41 VAL VAL A . n A 1 31 CYS 31 42 42 CYS CYS A . n A 1 32 GLY 32 43 43 GLY GLY A . n A 1 33 GLY 33 44 44 GLY GLY A . n A 1 34 SER 34 45 45 SER SER A . n A 1 35 LEU 35 46 46 LEU LEU A . n A 1 36 ILE 36 47 47 ILE ILE A . n A 1 37 SER 37 48 48 SER SER A . n A 1 38 PRO 38 49 49 PRO PRO A . n A 1 39 CYS 39 50 50 CYS CYS A . n A 1 40 TRP 40 51 51 TRP TRP A . n A 1 41 VAL 41 52 52 VAL VAL A . n A 1 42 ILE 42 53 53 ILE ILE A . n A 1 43 SER 43 54 54 SER SER A . n A 1 44 ALA 44 55 55 ALA ALA A . n A 1 45 THR 45 56 56 THR THR A . n A 1 46 HIS 46 57 57 HIS HIS A . n A 1 47 CYS 47 58 58 CYS CYS A . n A 1 48 PHE 48 59 59 PHE PHE A . n A 1 49 ILE 49 60 60 ILE ILE A . n A 1 50 ASP 50 60 60 ASP ASP A A n A 1 51 TYR 51 60 60 TYR TYR A B n A 1 52 PRO 52 60 60 PRO PRO A C n A 1 53 LYS 53 61 61 LYS LYS A . n A 1 54 LYS 54 62 62 LYS LYS A . n A 1 55 GLU 55 62 62 GLU GLU A A n A 1 56 ASP 56 63 63 ASP ASP A . n A 1 57 TYR 57 64 64 TYR TYR A . n A 1 58 ILE 58 65 65 ILE ILE A . n A 1 59 VAL 59 66 66 VAL VAL A . n A 1 60 TYR 60 67 67 TYR TYR A . n A 1 61 LEU 61 68 68 LEU LEU A . n A 1 62 GLY 62 69 69 GLY GLY A . n A 1 63 ARG 63 70 70 ARG ARG A . n A 1 64 SER 64 71 71 SER SER A . n A 1 65 ARG 65 72 72 ARG ARG A . n A 1 66 LEU 66 73 73 LEU LEU A . n A 1 67 ASN 67 74 74 ASN ASN A . n A 1 68 SER 68 75 75 SER SER A . n A 1 69 ASN 69 76 76 ASN ASN A . n A 1 70 THR 70 77 77 THR THR A . n A 1 71 GLN 71 78 78 GLN GLN A . n A 1 72 GLY 72 79 79 GLY GLY A . n A 1 73 GLU 73 80 80 GLU GLU A . n A 1 74 MET 74 81 81 MET MET A . n A 1 75 LYS 75 82 82 LYS LYS A . n A 1 76 PHE 76 83 83 PHE PHE A . n A 1 77 GLU 77 84 84 GLU GLU A . n A 1 78 VAL 78 85 85 VAL VAL A . n A 1 79 GLU 79 86 86 GLU GLU A . n A 1 80 ASN 80 87 87 ASN ASN A . n A 1 81 LEU 81 88 88 LEU LEU A . n A 1 82 ILE 82 89 89 ILE ILE A . n A 1 83 LEU 83 90 90 LEU LEU A . n A 1 84 HIS 84 91 91 HIS HIS A . n A 1 85 LYS 85 92 92 LYS LYS A . n A 1 86 ASP 86 93 93 ASP ASP A . n A 1 87 TYR 87 94 94 TYR TYR A . n A 1 88 SER 88 95 95 SER SER A . n A 1 89 ALA 89 96 96 ALA ALA A . n A 1 90 ASP 90 97 97 ASP ASP A . n A 1 91 THR 91 97 97 THR THR A A n A 1 92 LEU 92 97 97 LEU LEU A B n A 1 93 ALA 93 98 98 ALA ALA A . n A 1 94 HIS 94 99 99 HIS HIS A . n A 1 95 HIS 95 100 100 HIS HIS A . n A 1 96 ASN 96 101 101 ASN ASN A . n A 1 97 ASP 97 102 102 ASP ASP A . n A 1 98 ILE 98 103 103 ILE ILE A . n A 1 99 ALA 99 104 104 ALA ALA A . n A 1 100 LEU 100 105 105 LEU LEU A . n A 1 101 LEU 101 106 106 LEU LEU A . n A 1 102 LYS 102 107 107 LYS LYS A . n A 1 103 ILE 103 108 108 ILE ILE A . n A 1 104 ARG 104 109 109 ARG ARG A . n A 1 105 SER 105 110 110 SER SER A . n A 1 106 LYS 106 110 110 LYS LYS A A n A 1 107 GLU 107 110 110 GLU GLU A B n A 1 108 GLY 108 110 110 GLY GLY A C n A 1 109 ARG 109 110 110 ARG ARG A D n A 1 110 CYS 110 111 111 CYS CYS A . n A 1 111 ALA 111 112 112 ALA ALA A . n A 1 112 GLN 112 113 113 GLN GLN A . n A 1 113 PRO 113 114 114 PRO PRO A . n A 1 114 SER 114 115 115 SER SER A . n A 1 115 ARG 115 116 116 ARG ARG A . n A 1 116 THR 116 117 117 THR THR A . n A 1 117 ILE 117 118 118 ILE ILE A . n A 1 118 GLN 118 119 119 GLN GLN A . n A 1 119 THR 119 120 120 THR THR A . n A 1 120 ILE 120 121 121 ILE ILE A . n A 1 121 ALA 121 122 122 ALA ALA A . n A 1 122 LEU 122 123 123 LEU LEU A . n A 1 123 PRO 123 124 124 PRO PRO A . n A 1 124 SER 124 125 125 SER SER A . n A 1 125 MET 125 126 126 MET MET A . n A 1 126 TYR 126 127 127 TYR TYR A . n A 1 127 ASN 127 128 128 ASN ASN A . n A 1 128 ASP 128 129 129 ASP ASP A . n A 1 129 PRO 129 130 130 PRO PRO A . n A 1 130 GLN 130 131 131 GLN GLN A . n A 1 131 PHE 131 132 132 PHE PHE A . n A 1 132 GLY 132 133 133 GLY GLY A . n A 1 133 THR 133 134 134 THR THR A . n A 1 134 SER 134 135 135 SER SER A . n A 1 135 CYS 135 136 136 CYS CYS A . n A 1 136 GLU 136 137 137 GLU GLU A . n A 1 137 ILE 137 138 138 ILE ILE A . n A 1 138 THR 138 139 139 THR THR A . n A 1 139 GLY 139 140 140 GLY GLY A . n A 1 140 PHE 140 141 141 PHE PHE A . n A 1 141 GLY 141 142 142 GLY GLY A . n A 1 142 LYS 142 143 143 LYS LYS A . n A 1 143 GLU 143 144 144 GLU GLU A . n A 1 144 GLN 144 145 145 GLN GLN A . n A 1 145 SER 145 146 146 SER SER A . n A 1 146 THR 146 147 147 THR THR A . n A 1 147 ASP 147 148 148 ASP ASP A . n A 1 148 TYR 148 149 149 TYR TYR A . n A 1 149 LEU 149 150 150 LEU LEU A . n A 1 150 TYR 150 151 151 TYR TYR A . n A 1 151 PRO 151 152 152 PRO PRO A . n A 1 152 GLU 152 153 153 GLU GLU A . n A 1 153 GLN 153 154 154 GLN GLN A . n A 1 154 LEU 154 155 155 LEU LEU A . n A 1 155 LYS 155 156 156 LYS LYS A . n A 1 156 MET 156 157 157 MET MET A . n A 1 157 THR 157 158 158 THR THR A . n A 1 158 VAL 158 159 159 VAL VAL A . n A 1 159 VAL 159 160 160 VAL VAL A . n A 1 160 LYS 160 161 161 LYS LYS A . n A 1 161 LEU 161 162 162 LEU LEU A . n A 1 162 ILE 162 163 163 ILE ILE A . n A 1 163 SER 163 164 164 SER SER A . n A 1 164 HIS 164 165 165 HIS HIS A . n A 1 165 ARG 165 166 166 ARG ARG A . n A 1 166 GLU 166 167 167 GLU GLU A . n A 1 167 CYS 167 168 168 CYS CYS A . n A 1 168 GLN 168 169 169 GLN GLN A . n A 1 169 GLN 169 170 170 GLN GLN A . n A 1 170 PRO 170 170 170 PRO PRO A A n A 1 171 HIS 171 170 170 HIS HIS A B n A 1 172 TYR 172 171 171 TYR TYR A . n A 1 173 TYR 173 172 172 TYR TYR A . n A 1 174 GLY 174 173 173 GLY GLY A . n A 1 175 SER 175 174 174 SER SER A . n A 1 176 GLU 176 175 175 GLU GLU A . n A 1 177 VAL 177 176 176 VAL VAL A . n A 1 178 THR 178 177 177 THR THR A . n A 1 179 THR 179 178 178 THR THR A . n A 1 180 LYS 180 179 179 LYS LYS A . n A 1 181 MET 181 180 180 MET MET A . n A 1 182 LEU 182 181 181 LEU LEU A . n A 1 183 CYS 183 182 182 CYS CYS A . n A 1 184 ALA 184 183 183 ALA ALA A . n A 1 185 ALA 185 184 184 ALA ALA A . n A 1 186 ASP 186 185 185 ASP ASP A . n A 1 187 PRO 187 185 185 PRO PRO A A n A 1 188 GLN 188 185 185 GLN GLN A B n A 1 189 TRP 189 186 186 TRP TRP A . n A 1 190 LYS 190 187 187 LYS LYS A . n A 1 191 THR 191 188 188 THR THR A . n A 1 192 ASP 192 189 189 ASP ASP A . n A 1 193 SER 193 190 190 SER SER A . n A 1 194 CYS 194 191 191 CYS CYS A . n A 1 195 GLN 195 192 192 GLN GLN A . n A 1 196 GLY 196 193 193 GLY GLY A . n A 1 197 ASP 197 194 194 ASP ASP A . n A 1 198 SER 198 195 195 SER SER A . n A 1 199 GLY 199 196 196 GLY GLY A . n A 1 200 GLY 200 197 197 GLY GLY A . n A 1 201 PRO 201 198 198 PRO PRO A . n A 1 202 LEU 202 199 199 LEU LEU A . n A 1 203 VAL 203 200 200 VAL VAL A . n A 1 204 CYS 204 201 201 CYS CYS A . n A 1 205 SER 205 202 202 SER SER A . n A 1 206 LEU 206 203 203 LEU LEU A . n A 1 207 GLN 207 204 204 GLN GLN A . n A 1 208 GLY 208 205 205 GLY GLY A . n A 1 209 ARG 209 206 206 ARG ARG A . n A 1 210 MET 210 207 207 MET MET A . n A 1 211 THR 211 208 208 THR THR A . n A 1 212 LEU 212 209 209 LEU LEU A . n A 1 213 THR 213 210 210 THR THR A . n A 1 214 GLY 214 211 211 GLY GLY A . n A 1 215 ILE 215 212 212 ILE ILE A . n A 1 216 VAL 216 213 213 VAL VAL A . n A 1 217 SER 217 214 214 SER SER A . n A 1 218 TRP 218 215 215 TRP TRP A . n A 1 219 GLY 219 216 216 GLY GLY A . n A 1 220 ARG 220 217 217 ARG ARG A . n A 1 221 GLY 221 218 218 GLY GLY A . n A 1 222 CYS 222 220 220 CYS CYS A . n A 1 223 ALA 223 221 221 ALA ALA A . n A 1 224 LEU 224 222 222 LEU LEU A . n A 1 225 LYS 225 223 223 LYS LYS A . n A 1 226 ASP 226 223 223 ASP ASP A A n A 1 227 LYS 227 224 224 LYS LYS A . n A 1 228 PRO 228 225 225 PRO PRO A . n A 1 229 GLY 229 226 226 GLY GLY A . n A 1 230 VAL 230 227 227 VAL VAL A . n A 1 231 TYR 231 228 228 TYR TYR A . n A 1 232 THR 232 229 229 THR THR A . n A 1 233 ARG 233 230 230 ARG ARG A . n A 1 234 VAL 234 231 231 VAL VAL A . n A 1 235 SER 235 232 232 SER SER A . n A 1 236 HIS 236 233 233 HIS HIS A . n A 1 237 PHE 237 234 234 PHE PHE A . n A 1 238 LEU 238 235 235 LEU LEU A . n A 1 239 PRO 239 236 236 PRO PRO A . n A 1 240 TRP 240 237 237 TRP TRP A . n A 1 241 ILE 241 238 238 ILE ILE A . n A 1 242 ARG 242 239 239 ARG ARG A . n A 1 243 SER 243 240 240 SER SER A . n A 1 244 HIS 244 241 241 HIS HIS A . n A 1 245 THR 245 242 242 THR THR A . n B 2 1 ALA 1 1 1 ALA ALA B . n B 2 2 CYS 2 2 2 CYS CYS B . n B 2 3 SER 3 3 3 SER SER B . n B 2 4 ARG 4 4 4 ARG ARG B . n B 2 5 TYR 5 5 5 TYR TYR B . n B 2 6 GLU 6 6 6 GLU GLU B . n B 2 7 VAL 7 7 7 VAL VAL B . n B 2 8 ASP 8 8 8 ASP ASP B . n B 2 9 CYS 9 9 9 CYS CYS B . n B 2 10 ARG 10 10 10 ARG ARG B . n B 2 11 GLY 11 11 11 GLY GLY B . n B 2 12 ARG 12 12 12 ARG ARG B . n B 2 13 DBB 13 13 13 DBB DBB B . n B 2 14 SER 14 14 14 SER SER B . n B 2 15 ALA 15 15 15 ALA ALA B . n B 2 16 CYS 16 16 16 CYS CYS B . n B 2 17 GLY 17 17 17 GLY GLY B . n B 2 18 NH2 18 18 18 NH2 NH2 B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 1 301 1 SO4 SO4 A . D 3 SO4 1 302 2 SO4 SO4 A . E 3 SO4 1 303 3 SO4 SO4 A . F 3 SO4 1 304 4 SO4 SO4 A . G 4 CL 1 305 5 CL CL A . H 5 P6G 1 306 6 P6G P6G A . I 6 ZBR 1 101 19 ZBR LIG B . J 7 HOH 1 401 1 HOH HOH A . J 7 HOH 2 402 2 HOH HOH A . J 7 HOH 3 403 3 HOH HOH A . J 7 HOH 4 404 4 HOH HOH A . J 7 HOH 5 405 5 HOH HOH A . J 7 HOH 6 406 6 HOH HOH A . J 7 HOH 7 407 7 HOH HOH A . J 7 HOH 8 408 8 HOH HOH A . J 7 HOH 9 409 9 HOH HOH A . J 7 HOH 10 410 10 HOH HOH A . J 7 HOH 11 411 11 HOH HOH A . J 7 HOH 12 412 12 HOH HOH A . J 7 HOH 13 413 13 HOH HOH A . J 7 HOH 14 414 14 HOH HOH A . J 7 HOH 15 415 15 HOH HOH A . J 7 HOH 16 416 16 HOH HOH A . J 7 HOH 17 417 17 HOH HOH A . J 7 HOH 18 418 18 HOH HOH A . J 7 HOH 19 419 19 HOH HOH A . J 7 HOH 20 420 20 HOH HOH A . J 7 HOH 21 421 21 HOH HOH A . J 7 HOH 22 422 23 HOH HOH A . J 7 HOH 23 423 24 HOH HOH A . J 7 HOH 24 424 25 HOH HOH A . J 7 HOH 25 425 26 HOH HOH A . J 7 HOH 26 426 27 HOH HOH A . J 7 HOH 27 427 28 HOH HOH A . J 7 HOH 28 428 29 HOH HOH A . J 7 HOH 29 429 30 HOH HOH A . J 7 HOH 30 430 31 HOH HOH A . J 7 HOH 31 431 32 HOH HOH A . J 7 HOH 32 432 34 HOH HOH A . J 7 HOH 33 433 35 HOH HOH A . J 7 HOH 34 434 36 HOH HOH A . J 7 HOH 35 435 37 HOH HOH A . J 7 HOH 36 436 38 HOH HOH A . J 7 HOH 37 437 39 HOH HOH A . J 7 HOH 38 438 40 HOH HOH A . J 7 HOH 39 439 41 HOH HOH A . J 7 HOH 40 440 42 HOH HOH A . J 7 HOH 41 441 43 HOH HOH A . J 7 HOH 42 442 44 HOH HOH A . J 7 HOH 43 443 45 HOH HOH A . J 7 HOH 44 444 46 HOH HOH A . J 7 HOH 45 445 47 HOH HOH A . J 7 HOH 46 446 48 HOH HOH A . J 7 HOH 47 447 49 HOH HOH A . J 7 HOH 48 448 50 HOH HOH A . J 7 HOH 49 449 51 HOH HOH A . J 7 HOH 50 450 52 HOH HOH A . J 7 HOH 51 451 53 HOH HOH A . J 7 HOH 52 452 55 HOH HOH A . J 7 HOH 53 453 56 HOH HOH A . J 7 HOH 54 454 57 HOH HOH A . J 7 HOH 55 455 58 HOH HOH A . J 7 HOH 56 456 59 HOH HOH A . J 7 HOH 57 457 60 HOH HOH A . J 7 HOH 58 458 61 HOH HOH A . J 7 HOH 59 459 62 HOH HOH A . J 7 HOH 60 460 63 HOH HOH A . J 7 HOH 61 461 64 HOH HOH A . J 7 HOH 62 462 65 HOH HOH A . J 7 HOH 63 463 66 HOH HOH A . J 7 HOH 64 464 67 HOH HOH A . J 7 HOH 65 465 68 HOH HOH A . J 7 HOH 66 466 69 HOH HOH A . J 7 HOH 67 467 70 HOH HOH A . J 7 HOH 68 468 71 HOH HOH A . J 7 HOH 69 469 72 HOH HOH A . J 7 HOH 70 470 73 HOH HOH A . J 7 HOH 71 471 74 HOH HOH A . J 7 HOH 72 472 75 HOH HOH A . J 7 HOH 73 473 76 HOH HOH A . J 7 HOH 74 474 77 HOH HOH A . J 7 HOH 75 475 78 HOH HOH A . J 7 HOH 76 476 79 HOH HOH A . J 7 HOH 77 477 80 HOH HOH A . J 7 HOH 78 478 81 HOH HOH A . J 7 HOH 79 479 82 HOH HOH A . J 7 HOH 80 480 83 HOH HOH A . J 7 HOH 81 481 84 HOH HOH A . J 7 HOH 82 482 85 HOH HOH A . J 7 HOH 83 483 86 HOH HOH A . J 7 HOH 84 484 87 HOH HOH A . J 7 HOH 85 485 88 HOH HOH A . J 7 HOH 86 486 89 HOH HOH A . J 7 HOH 87 487 90 HOH HOH A . J 7 HOH 88 488 91 HOH HOH A . J 7 HOH 89 489 92 HOH HOH A . J 7 HOH 90 490 93 HOH HOH A . J 7 HOH 91 491 94 HOH HOH A . J 7 HOH 92 492 95 HOH HOH A . J 7 HOH 93 493 96 HOH HOH A . J 7 HOH 94 494 97 HOH HOH A . J 7 HOH 95 495 98 HOH HOH A . J 7 HOH 96 496 99 HOH HOH A . J 7 HOH 97 497 100 HOH HOH A . J 7 HOH 98 498 101 HOH HOH A . J 7 HOH 99 499 102 HOH HOH A . J 7 HOH 100 500 103 HOH HOH A . J 7 HOH 101 501 105 HOH HOH A . J 7 HOH 102 502 106 HOH HOH A . J 7 HOH 103 503 107 HOH HOH A . J 7 HOH 104 504 109 HOH HOH A . J 7 HOH 105 505 110 HOH HOH A . K 7 HOH 1 201 22 HOH HOH B . K 7 HOH 2 202 33 HOH HOH B . K 7 HOH 3 203 54 HOH HOH B . K 7 HOH 4 204 104 HOH HOH B . K 7 HOH 5 205 108 HOH HOH B . # _pdbx_molecule_features.prd_id PRD_000927 _pdbx_molecule_features.name 'bicyclic peptide UK18-D-Aba inhibitor of uPA' _pdbx_molecule_features.type 'Cyclic peptide' _pdbx_molecule_features.class Inhibitor _pdbx_molecule_features.details ? # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_000927 B 1 PRD_000927 I # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2860 ? 1 MORE -64 ? 1 'SSA (A^2)' 11990 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-07-17 2 'Structure model' 1 1 2013-07-31 3 'Structure model' 1 2 2017-11-15 4 'Structure model' 1 3 2023-09-20 5 'Structure model' 1 4 2023-12-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 4 'Structure model' 'Source and taxonomy' 8 5 'Structure model' 'Data collection' 9 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' entity_src_gen 6 4 'Structure model' pdbx_initial_refinement_model 7 4 'Structure model' struct_conn 8 4 'Structure model' struct_ref_seq_dif 9 4 'Structure model' struct_site 10 5 'Structure model' chem_comp_atom 11 5 'Structure model' chem_comp_bond 12 5 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_entity_src_gen.host_org_common_name' 4 4 'Structure model' '_entity_src_gen.pdbx_host_org_cell_line' 5 4 'Structure model' '_entity_src_gen.pdbx_host_org_strain' 6 4 'Structure model' '_struct_conn.pdbx_dist_value' 7 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 8 4 'Structure model' '_struct_conn.pdbx_value_order' 9 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 10 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 11 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 12 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 13 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 14 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 15 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 16 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 17 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 18 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 19 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 20 4 'Structure model' '_struct_ref_seq_dif.details' 21 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 22 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 23 4 'Structure model' '_struct_site.pdbx_auth_seq_id' 24 5 'Structure model' '_chem_comp_atom.atom_id' 25 5 'Structure model' '_chem_comp_bond.atom_id_2' 26 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -35.4980 113.3080 -2.4820 0.1526 0.1516 0.0895 0.0275 -0.0128 -0.0214 2.9957 3.8360 1.4802 -0.9588 -0.1446 -0.0676 -0.0872 -0.0374 -0.0862 -0.0220 0.0948 0.3783 0.1443 -0.2303 -0.0077 'X-RAY DIFFRACTION' 2 ? refined -35.5840 106.1310 5.6040 0.2045 0.1848 0.0868 0.0067 0.0325 0.0675 24.1100 20.9184 7.0205 -16.8935 -5.5735 6.2812 -0.2953 -0.3570 -0.4826 0.6736 0.2784 0.1894 0.4967 -0.1348 0.0170 'X-RAY DIFFRACTION' 3 ? refined -37.1550 121.0620 2.7730 0.1218 0.1847 0.1752 0.0776 0.0204 -0.0316 6.3380 5.0728 1.8410 -1.2187 0.6700 -0.5233 -0.0629 -0.4909 0.5077 0.3848 0.2575 0.3985 -0.1425 -0.4536 -0.1945 'X-RAY DIFFRACTION' 4 ? refined -24.8970 135.7580 5.1760 0.4821 0.1664 0.7563 0.0799 -0.2208 -0.3108 4.0544 17.3163 24.2366 -5.5454 -2.0456 -10.2744 -0.6777 -0.3027 0.3589 1.3827 0.4310 0.4279 -1.4087 -0.4855 0.2467 'X-RAY DIFFRACTION' 5 ? refined -25.0760 116.9190 -10.7610 0.2009 0.1302 0.1341 0.0768 0.0220 0.0245 2.8841 3.3965 1.5932 0.1740 -0.6298 -0.0488 0.0962 0.1934 0.4202 -0.3371 -0.1934 -0.2379 -0.1064 0.1413 0.0972 'X-RAY DIFFRACTION' 6 ? refined -20.3310 132.5000 -12.8090 0.1787 0.1531 0.8380 0.0170 0.0750 0.2325 1.6502 12.4373 4.3071 3.0388 -0.3151 -1.9143 -0.0353 0.3204 0.9678 -0.1287 0.3602 0.5283 -0.8123 -0.1763 -0.3249 'X-RAY DIFFRACTION' 7 ? refined -24.1240 127.4940 -9.4850 0.1784 0.1096 0.3581 0.0123 0.0595 0.0156 4.3436 3.2500 1.2831 0.6604 -0.1234 -0.2165 0.0608 0.0269 0.9838 -0.1855 0.0542 -0.3951 -0.3270 0.1108 -0.1149 'X-RAY DIFFRACTION' 8 ? refined -28.2040 128.9880 -7.3580 0.1971 0.1320 0.4673 0.0450 0.0117 0.0294 3.3194 2.3844 1.9511 -0.4183 -0.5284 0.0592 0.1232 0.0826 0.9659 -0.1995 0.1050 -0.2677 -0.2657 0.0318 -0.2282 'X-RAY DIFFRACTION' 9 ? refined -37.7790 130.0270 9.8230 0.4439 0.7695 0.4958 0.1295 -0.1504 -0.4596 1.8704 39.9106 11.4920 2.8037 -1.7888 15.8712 0.4993 -0.5836 -0.0619 2.3632 -0.5567 -0.5562 0.2339 0.4357 0.0575 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 16 ? ? A 77 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 78 ? ? A 84 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 85 ? ? A 123 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 124 ? ? A 128 ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 129 ? ? A 156 ? ? ? ? 'X-RAY DIFFRACTION' 6 6 A 157 ? ? A 170 ? ? '157 to 170B' ? 'X-RAY DIFFRACTION' 7 7 A 171 ? ? A 206 ? ? ? ? 'X-RAY DIFFRACTION' 8 8 A 207 ? ? A 237 ? ? ? ? 'X-RAY DIFFRACTION' 9 9 A 238 ? ? A 242 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHASER phasing . ? 1 REFMAC refinement 5.7.0032 ? 2 MOSFLM 'data reduction' . ? 3 SCALA 'data scaling' . ? 4 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OH _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 TYR _pdbx_validate_close_contact.auth_seq_id_1 149 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 427 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.11 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 72 ? ? CZ A ARG 72 ? ? NH1 A ARG 72 ? ? 116.63 120.30 -3.67 0.50 N 2 1 CB A ASN 87 ? ? CA A ASN 87 ? ? C A ASN 87 ? ? 98.03 110.40 -12.37 2.00 N 3 1 CA B CYS 2 ? ? CB B CYS 2 ? ? SG B CYS 2 ? ? 126.14 114.20 11.94 1.10 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 37 A ? -34.53 -38.91 2 1 SER A 54 ? ? -156.04 -156.61 3 1 ASP A 97 ? ? -67.34 -164.42 4 1 LEU A 97 B ? -125.56 -57.07 5 1 GLN A 169 ? ? -91.08 34.18 6 1 TYR A 171 ? ? -97.54 -109.13 7 1 SER A 214 ? ? -122.51 -60.16 8 1 SER B 3 ? ? -110.60 -164.86 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CL CL CL N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 DBB N N N N 89 DBB CA C N R 90 DBB C C N N 91 DBB O O N N 92 DBB CB C N N 93 DBB CG C N N 94 DBB OXT O N N 95 DBB H H N N 96 DBB H2 H N N 97 DBB HA H N N 98 DBB HB2 H N N 99 DBB HB3 H N N 100 DBB HG1 H N N 101 DBB HG2 H N N 102 DBB HG3 H N N 103 DBB HXT H N N 104 GLN N N N N 105 GLN CA C N S 106 GLN C C N N 107 GLN O O N N 108 GLN CB C N N 109 GLN CG C N N 110 GLN CD C N N 111 GLN OE1 O N N 112 GLN NE2 N N N 113 GLN OXT O N N 114 GLN H H N N 115 GLN H2 H N N 116 GLN HA H N N 117 GLN HB2 H N N 118 GLN HB3 H N N 119 GLN HG2 H N N 120 GLN HG3 H N N 121 GLN HE21 H N N 122 GLN HE22 H N N 123 GLN HXT H N N 124 GLU N N N N 125 GLU CA C N S 126 GLU C C N N 127 GLU O O N N 128 GLU CB C N N 129 GLU CG C N N 130 GLU CD C N N 131 GLU OE1 O N N 132 GLU OE2 O N N 133 GLU OXT O N N 134 GLU H H N N 135 GLU H2 H N N 136 GLU HA H N N 137 GLU HB2 H N N 138 GLU HB3 H N N 139 GLU HG2 H N N 140 GLU HG3 H N N 141 GLU HE2 H N N 142 GLU HXT H N N 143 GLY N N N N 144 GLY CA C N N 145 GLY C C N N 146 GLY O O N N 147 GLY OXT O N N 148 GLY H H N N 149 GLY H2 H N N 150 GLY HA2 H N N 151 GLY HA3 H N N 152 GLY HXT H N N 153 HIS N N N N 154 HIS CA C N S 155 HIS C C N N 156 HIS O O N N 157 HIS CB C N N 158 HIS CG C Y N 159 HIS ND1 N Y N 160 HIS CD2 C Y N 161 HIS CE1 C Y N 162 HIS NE2 N Y N 163 HIS OXT O N N 164 HIS H H N N 165 HIS H2 H N N 166 HIS HA H N N 167 HIS HB2 H N N 168 HIS HB3 H N N 169 HIS HD1 H N N 170 HIS HD2 H N N 171 HIS HE1 H N N 172 HIS HE2 H N N 173 HIS HXT H N N 174 HOH O O N N 175 HOH H1 H N N 176 HOH H2 H N N 177 ILE N N N N 178 ILE CA C N S 179 ILE C C N N 180 ILE O O N N 181 ILE CB C N S 182 ILE CG1 C N N 183 ILE CG2 C N N 184 ILE CD1 C N N 185 ILE OXT O N N 186 ILE H H N N 187 ILE H2 H N N 188 ILE HA H N N 189 ILE HB H N N 190 ILE HG12 H N N 191 ILE HG13 H N N 192 ILE HG21 H N N 193 ILE HG22 H N N 194 ILE HG23 H N N 195 ILE HD11 H N N 196 ILE HD12 H N N 197 ILE HD13 H N N 198 ILE HXT H N N 199 LEU N N N N 200 LEU CA C N S 201 LEU C C N N 202 LEU O O N N 203 LEU CB C N N 204 LEU CG C N N 205 LEU CD1 C N N 206 LEU CD2 C N N 207 LEU OXT O N N 208 LEU H H N N 209 LEU H2 H N N 210 LEU HA H N N 211 LEU HB2 H N N 212 LEU HB3 H N N 213 LEU HG H N N 214 LEU HD11 H N N 215 LEU HD12 H N N 216 LEU HD13 H N N 217 LEU HD21 H N N 218 LEU HD22 H N N 219 LEU HD23 H N N 220 LEU HXT H N N 221 LYS N N N N 222 LYS CA C N S 223 LYS C C N N 224 LYS O O N N 225 LYS CB C N N 226 LYS CG C N N 227 LYS CD C N N 228 LYS CE C N N 229 LYS NZ N N N 230 LYS OXT O N N 231 LYS H H N N 232 LYS H2 H N N 233 LYS HA H N N 234 LYS HB2 H N N 235 LYS HB3 H N N 236 LYS HG2 H N N 237 LYS HG3 H N N 238 LYS HD2 H N N 239 LYS HD3 H N N 240 LYS HE2 H N N 241 LYS HE3 H N N 242 LYS HZ1 H N N 243 LYS HZ2 H N N 244 LYS HZ3 H N N 245 LYS HXT H N N 246 MET N N N N 247 MET CA C N S 248 MET C C N N 249 MET O O N N 250 MET CB C N N 251 MET CG C N N 252 MET SD S N N 253 MET CE C N N 254 MET OXT O N N 255 MET H H N N 256 MET H2 H N N 257 MET HA H N N 258 MET HB2 H N N 259 MET HB3 H N N 260 MET HG2 H N N 261 MET HG3 H N N 262 MET HE1 H N N 263 MET HE2 H N N 264 MET HE3 H N N 265 MET HXT H N N 266 NH2 N N N N 267 NH2 HN1 H N N 268 NH2 HN2 H N N 269 P6G O1 O N N 270 P6G C2 C N N 271 P6G C3 C N N 272 P6G O4 O N N 273 P6G C5 C N N 274 P6G C6 C N N 275 P6G O7 O N N 276 P6G C8 C N N 277 P6G C9 C N N 278 P6G O10 O N N 279 P6G C11 C N N 280 P6G C12 C N N 281 P6G O13 O N N 282 P6G C14 C N N 283 P6G C15 C N N 284 P6G O16 O N N 285 P6G C17 C N N 286 P6G C18 C N N 287 P6G O19 O N N 288 P6G H1 H N N 289 P6G H21 H N N 290 P6G H22 H N N 291 P6G H31 H N N 292 P6G H32 H N N 293 P6G H51 H N N 294 P6G H52 H N N 295 P6G H61 H N N 296 P6G H62 H N N 297 P6G H81 H N N 298 P6G H82 H N N 299 P6G H91 H N N 300 P6G H92 H N N 301 P6G H111 H N N 302 P6G H112 H N N 303 P6G H121 H N N 304 P6G H122 H N N 305 P6G H141 H N N 306 P6G H142 H N N 307 P6G H151 H N N 308 P6G H152 H N N 309 P6G H171 H N N 310 P6G H172 H N N 311 P6G H181 H N N 312 P6G H182 H N N 313 P6G H19 H N N 314 PHE N N N N 315 PHE CA C N S 316 PHE C C N N 317 PHE O O N N 318 PHE CB C N N 319 PHE CG C Y N 320 PHE CD1 C Y N 321 PHE CD2 C Y N 322 PHE CE1 C Y N 323 PHE CE2 C Y N 324 PHE CZ C Y N 325 PHE OXT O N N 326 PHE H H N N 327 PHE H2 H N N 328 PHE HA H N N 329 PHE HB2 H N N 330 PHE HB3 H N N 331 PHE HD1 H N N 332 PHE HD2 H N N 333 PHE HE1 H N N 334 PHE HE2 H N N 335 PHE HZ H N N 336 PHE HXT H N N 337 PRO N N N N 338 PRO CA C N S 339 PRO C C N N 340 PRO O O N N 341 PRO CB C N N 342 PRO CG C N N 343 PRO CD C N N 344 PRO OXT O N N 345 PRO H H N N 346 PRO HA H N N 347 PRO HB2 H N N 348 PRO HB3 H N N 349 PRO HG2 H N N 350 PRO HG3 H N N 351 PRO HD2 H N N 352 PRO HD3 H N N 353 PRO HXT H N N 354 SER N N N N 355 SER CA C N S 356 SER C C N N 357 SER O O N N 358 SER CB C N N 359 SER OG O N N 360 SER OXT O N N 361 SER H H N N 362 SER H2 H N N 363 SER HA H N N 364 SER HB2 H N N 365 SER HB3 H N N 366 SER HG H N N 367 SER HXT H N N 368 SO4 S S N N 369 SO4 O1 O N N 370 SO4 O2 O N N 371 SO4 O3 O N N 372 SO4 O4 O N N 373 THR N N N N 374 THR CA C N S 375 THR C C N N 376 THR O O N N 377 THR CB C N R 378 THR OG1 O N N 379 THR CG2 C N N 380 THR OXT O N N 381 THR H H N N 382 THR H2 H N N 383 THR HA H N N 384 THR HB H N N 385 THR HG1 H N N 386 THR HG21 H N N 387 THR HG22 H N N 388 THR HG23 H N N 389 THR HXT H N N 390 TRP N N N N 391 TRP CA C N S 392 TRP C C N N 393 TRP O O N N 394 TRP CB C N N 395 TRP CG C Y N 396 TRP CD1 C Y N 397 TRP CD2 C Y N 398 TRP NE1 N Y N 399 TRP CE2 C Y N 400 TRP CE3 C Y N 401 TRP CZ2 C Y N 402 TRP CZ3 C Y N 403 TRP CH2 C Y N 404 TRP OXT O N N 405 TRP H H N N 406 TRP H2 H N N 407 TRP HA H N N 408 TRP HB2 H N N 409 TRP HB3 H N N 410 TRP HD1 H N N 411 TRP HE1 H N N 412 TRP HE3 H N N 413 TRP HZ2 H N N 414 TRP HZ3 H N N 415 TRP HH2 H N N 416 TRP HXT H N N 417 TYR N N N N 418 TYR CA C N S 419 TYR C C N N 420 TYR O O N N 421 TYR CB C N N 422 TYR CG C Y N 423 TYR CD1 C Y N 424 TYR CD2 C Y N 425 TYR CE1 C Y N 426 TYR CE2 C Y N 427 TYR CZ C Y N 428 TYR OH O N N 429 TYR OXT O N N 430 TYR H H N N 431 TYR H2 H N N 432 TYR HA H N N 433 TYR HB2 H N N 434 TYR HB3 H N N 435 TYR HD1 H N N 436 TYR HD2 H N N 437 TYR HE1 H N N 438 TYR HE2 H N N 439 TYR HH H N N 440 TYR HXT H N N 441 VAL N N N N 442 VAL CA C N S 443 VAL C C N N 444 VAL O O N N 445 VAL CB C N N 446 VAL CG1 C N N 447 VAL CG2 C N N 448 VAL OXT O N N 449 VAL H H N N 450 VAL H2 H N N 451 VAL HA H N N 452 VAL HB H N N 453 VAL HG11 H N N 454 VAL HG12 H N N 455 VAL HG13 H N N 456 VAL HG21 H N N 457 VAL HG22 H N N 458 VAL HG23 H N N 459 VAL HXT H N N 460 ZBR C1 C Y N 461 ZBR C2 C Y N 462 ZBR C3 C Y N 463 ZBR C4 C Y N 464 ZBR C5 C Y N 465 ZBR C6 C Y N 466 ZBR C7 C N N 467 ZBR C8 C N N 468 ZBR C9 C N N 469 ZBR BR1 BR N N 470 ZBR BR2 BR N N 471 ZBR BR3 BR N N 472 ZBR H2 H N N 473 ZBR H4 H N N 474 ZBR H6 H N N 475 ZBR H7 H N N 476 ZBR H7A H N N 477 ZBR H8 H N N 478 ZBR H8A H N N 479 ZBR H9 H N N 480 ZBR H9A H N N 481 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DBB N CA sing N N 83 DBB CA C sing N N 84 DBB CA CB sing N N 85 DBB C O doub N N 86 DBB CB CG sing N N 87 DBB C OXT sing N N 88 DBB N H sing N N 89 DBB N H2 sing N N 90 DBB CA HA sing N N 91 DBB CB HB2 sing N N 92 DBB CB HB3 sing N N 93 DBB CG HG1 sing N N 94 DBB CG HG2 sing N N 95 DBB CG HG3 sing N N 96 DBB OXT HXT sing N N 97 GLN N CA sing N N 98 GLN N H sing N N 99 GLN N H2 sing N N 100 GLN CA C sing N N 101 GLN CA CB sing N N 102 GLN CA HA sing N N 103 GLN C O doub N N 104 GLN C OXT sing N N 105 GLN CB CG sing N N 106 GLN CB HB2 sing N N 107 GLN CB HB3 sing N N 108 GLN CG CD sing N N 109 GLN CG HG2 sing N N 110 GLN CG HG3 sing N N 111 GLN CD OE1 doub N N 112 GLN CD NE2 sing N N 113 GLN NE2 HE21 sing N N 114 GLN NE2 HE22 sing N N 115 GLN OXT HXT sing N N 116 GLU N CA sing N N 117 GLU N H sing N N 118 GLU N H2 sing N N 119 GLU CA C sing N N 120 GLU CA CB sing N N 121 GLU CA HA sing N N 122 GLU C O doub N N 123 GLU C OXT sing N N 124 GLU CB CG sing N N 125 GLU CB HB2 sing N N 126 GLU CB HB3 sing N N 127 GLU CG CD sing N N 128 GLU CG HG2 sing N N 129 GLU CG HG3 sing N N 130 GLU CD OE1 doub N N 131 GLU CD OE2 sing N N 132 GLU OE2 HE2 sing N N 133 GLU OXT HXT sing N N 134 GLY N CA sing N N 135 GLY N H sing N N 136 GLY N H2 sing N N 137 GLY CA C sing N N 138 GLY CA HA2 sing N N 139 GLY CA HA3 sing N N 140 GLY C O doub N N 141 GLY C OXT sing N N 142 GLY OXT HXT sing N N 143 HIS N CA sing N N 144 HIS N H sing N N 145 HIS N H2 sing N N 146 HIS CA C sing N N 147 HIS CA CB sing N N 148 HIS CA HA sing N N 149 HIS C O doub N N 150 HIS C OXT sing N N 151 HIS CB CG sing N N 152 HIS CB HB2 sing N N 153 HIS CB HB3 sing N N 154 HIS CG ND1 sing Y N 155 HIS CG CD2 doub Y N 156 HIS ND1 CE1 doub Y N 157 HIS ND1 HD1 sing N N 158 HIS CD2 NE2 sing Y N 159 HIS CD2 HD2 sing N N 160 HIS CE1 NE2 sing Y N 161 HIS CE1 HE1 sing N N 162 HIS NE2 HE2 sing N N 163 HIS OXT HXT sing N N 164 HOH O H1 sing N N 165 HOH O H2 sing N N 166 ILE N CA sing N N 167 ILE N H sing N N 168 ILE N H2 sing N N 169 ILE CA C sing N N 170 ILE CA CB sing N N 171 ILE CA HA sing N N 172 ILE C O doub N N 173 ILE C OXT sing N N 174 ILE CB CG1 sing N N 175 ILE CB CG2 sing N N 176 ILE CB HB sing N N 177 ILE CG1 CD1 sing N N 178 ILE CG1 HG12 sing N N 179 ILE CG1 HG13 sing N N 180 ILE CG2 HG21 sing N N 181 ILE CG2 HG22 sing N N 182 ILE CG2 HG23 sing N N 183 ILE CD1 HD11 sing N N 184 ILE CD1 HD12 sing N N 185 ILE CD1 HD13 sing N N 186 ILE OXT HXT sing N N 187 LEU N CA sing N N 188 LEU N H sing N N 189 LEU N H2 sing N N 190 LEU CA C sing N N 191 LEU CA CB sing N N 192 LEU CA HA sing N N 193 LEU C O doub N N 194 LEU C OXT sing N N 195 LEU CB CG sing N N 196 LEU CB HB2 sing N N 197 LEU CB HB3 sing N N 198 LEU CG CD1 sing N N 199 LEU CG CD2 sing N N 200 LEU CG HG sing N N 201 LEU CD1 HD11 sing N N 202 LEU CD1 HD12 sing N N 203 LEU CD1 HD13 sing N N 204 LEU CD2 HD21 sing N N 205 LEU CD2 HD22 sing N N 206 LEU CD2 HD23 sing N N 207 LEU OXT HXT sing N N 208 LYS N CA sing N N 209 LYS N H sing N N 210 LYS N H2 sing N N 211 LYS CA C sing N N 212 LYS CA CB sing N N 213 LYS CA HA sing N N 214 LYS C O doub N N 215 LYS C OXT sing N N 216 LYS CB CG sing N N 217 LYS CB HB2 sing N N 218 LYS CB HB3 sing N N 219 LYS CG CD sing N N 220 LYS CG HG2 sing N N 221 LYS CG HG3 sing N N 222 LYS CD CE sing N N 223 LYS CD HD2 sing N N 224 LYS CD HD3 sing N N 225 LYS CE NZ sing N N 226 LYS CE HE2 sing N N 227 LYS CE HE3 sing N N 228 LYS NZ HZ1 sing N N 229 LYS NZ HZ2 sing N N 230 LYS NZ HZ3 sing N N 231 LYS OXT HXT sing N N 232 MET N CA sing N N 233 MET N H sing N N 234 MET N H2 sing N N 235 MET CA C sing N N 236 MET CA CB sing N N 237 MET CA HA sing N N 238 MET C O doub N N 239 MET C OXT sing N N 240 MET CB CG sing N N 241 MET CB HB2 sing N N 242 MET CB HB3 sing N N 243 MET CG SD sing N N 244 MET CG HG2 sing N N 245 MET CG HG3 sing N N 246 MET SD CE sing N N 247 MET CE HE1 sing N N 248 MET CE HE2 sing N N 249 MET CE HE3 sing N N 250 MET OXT HXT sing N N 251 NH2 N HN1 sing N N 252 NH2 N HN2 sing N N 253 P6G O1 C2 sing N N 254 P6G O1 H1 sing N N 255 P6G C2 C3 sing N N 256 P6G C2 H21 sing N N 257 P6G C2 H22 sing N N 258 P6G C3 O4 sing N N 259 P6G C3 H31 sing N N 260 P6G C3 H32 sing N N 261 P6G O4 C5 sing N N 262 P6G C5 C6 sing N N 263 P6G C5 H51 sing N N 264 P6G C5 H52 sing N N 265 P6G C6 O7 sing N N 266 P6G C6 H61 sing N N 267 P6G C6 H62 sing N N 268 P6G O7 C8 sing N N 269 P6G C8 C9 sing N N 270 P6G C8 H81 sing N N 271 P6G C8 H82 sing N N 272 P6G C9 O10 sing N N 273 P6G C9 H91 sing N N 274 P6G C9 H92 sing N N 275 P6G O10 C11 sing N N 276 P6G C11 C12 sing N N 277 P6G C11 H111 sing N N 278 P6G C11 H112 sing N N 279 P6G C12 O13 sing N N 280 P6G C12 H121 sing N N 281 P6G C12 H122 sing N N 282 P6G O13 C14 sing N N 283 P6G C14 C15 sing N N 284 P6G C14 H141 sing N N 285 P6G C14 H142 sing N N 286 P6G C15 O16 sing N N 287 P6G C15 H151 sing N N 288 P6G C15 H152 sing N N 289 P6G O16 C17 sing N N 290 P6G C17 C18 sing N N 291 P6G C17 H171 sing N N 292 P6G C17 H172 sing N N 293 P6G C18 O19 sing N N 294 P6G C18 H181 sing N N 295 P6G C18 H182 sing N N 296 P6G O19 H19 sing N N 297 PHE N CA sing N N 298 PHE N H sing N N 299 PHE N H2 sing N N 300 PHE CA C sing N N 301 PHE CA CB sing N N 302 PHE CA HA sing N N 303 PHE C O doub N N 304 PHE C OXT sing N N 305 PHE CB CG sing N N 306 PHE CB HB2 sing N N 307 PHE CB HB3 sing N N 308 PHE CG CD1 doub Y N 309 PHE CG CD2 sing Y N 310 PHE CD1 CE1 sing Y N 311 PHE CD1 HD1 sing N N 312 PHE CD2 CE2 doub Y N 313 PHE CD2 HD2 sing N N 314 PHE CE1 CZ doub Y N 315 PHE CE1 HE1 sing N N 316 PHE CE2 CZ sing Y N 317 PHE CE2 HE2 sing N N 318 PHE CZ HZ sing N N 319 PHE OXT HXT sing N N 320 PRO N CA sing N N 321 PRO N CD sing N N 322 PRO N H sing N N 323 PRO CA C sing N N 324 PRO CA CB sing N N 325 PRO CA HA sing N N 326 PRO C O doub N N 327 PRO C OXT sing N N 328 PRO CB CG sing N N 329 PRO CB HB2 sing N N 330 PRO CB HB3 sing N N 331 PRO CG CD sing N N 332 PRO CG HG2 sing N N 333 PRO CG HG3 sing N N 334 PRO CD HD2 sing N N 335 PRO CD HD3 sing N N 336 PRO OXT HXT sing N N 337 SER N CA sing N N 338 SER N H sing N N 339 SER N H2 sing N N 340 SER CA C sing N N 341 SER CA CB sing N N 342 SER CA HA sing N N 343 SER C O doub N N 344 SER C OXT sing N N 345 SER CB OG sing N N 346 SER CB HB2 sing N N 347 SER CB HB3 sing N N 348 SER OG HG sing N N 349 SER OXT HXT sing N N 350 SO4 S O1 doub N N 351 SO4 S O2 doub N N 352 SO4 S O3 sing N N 353 SO4 S O4 sing N N 354 THR N CA sing N N 355 THR N H sing N N 356 THR N H2 sing N N 357 THR CA C sing N N 358 THR CA CB sing N N 359 THR CA HA sing N N 360 THR C O doub N N 361 THR C OXT sing N N 362 THR CB OG1 sing N N 363 THR CB CG2 sing N N 364 THR CB HB sing N N 365 THR OG1 HG1 sing N N 366 THR CG2 HG21 sing N N 367 THR CG2 HG22 sing N N 368 THR CG2 HG23 sing N N 369 THR OXT HXT sing N N 370 TRP N CA sing N N 371 TRP N H sing N N 372 TRP N H2 sing N N 373 TRP CA C sing N N 374 TRP CA CB sing N N 375 TRP CA HA sing N N 376 TRP C O doub N N 377 TRP C OXT sing N N 378 TRP CB CG sing N N 379 TRP CB HB2 sing N N 380 TRP CB HB3 sing N N 381 TRP CG CD1 doub Y N 382 TRP CG CD2 sing Y N 383 TRP CD1 NE1 sing Y N 384 TRP CD1 HD1 sing N N 385 TRP CD2 CE2 doub Y N 386 TRP CD2 CE3 sing Y N 387 TRP NE1 CE2 sing Y N 388 TRP NE1 HE1 sing N N 389 TRP CE2 CZ2 sing Y N 390 TRP CE3 CZ3 doub Y N 391 TRP CE3 HE3 sing N N 392 TRP CZ2 CH2 doub Y N 393 TRP CZ2 HZ2 sing N N 394 TRP CZ3 CH2 sing Y N 395 TRP CZ3 HZ3 sing N N 396 TRP CH2 HH2 sing N N 397 TRP OXT HXT sing N N 398 TYR N CA sing N N 399 TYR N H sing N N 400 TYR N H2 sing N N 401 TYR CA C sing N N 402 TYR CA CB sing N N 403 TYR CA HA sing N N 404 TYR C O doub N N 405 TYR C OXT sing N N 406 TYR CB CG sing N N 407 TYR CB HB2 sing N N 408 TYR CB HB3 sing N N 409 TYR CG CD1 doub Y N 410 TYR CG CD2 sing Y N 411 TYR CD1 CE1 sing Y N 412 TYR CD1 HD1 sing N N 413 TYR CD2 CE2 doub Y N 414 TYR CD2 HD2 sing N N 415 TYR CE1 CZ doub Y N 416 TYR CE1 HE1 sing N N 417 TYR CE2 CZ sing Y N 418 TYR CE2 HE2 sing N N 419 TYR CZ OH sing N N 420 TYR OH HH sing N N 421 TYR OXT HXT sing N N 422 VAL N CA sing N N 423 VAL N H sing N N 424 VAL N H2 sing N N 425 VAL CA C sing N N 426 VAL CA CB sing N N 427 VAL CA HA sing N N 428 VAL C O doub N N 429 VAL C OXT sing N N 430 VAL CB CG1 sing N N 431 VAL CB CG2 sing N N 432 VAL CB HB sing N N 433 VAL CG1 HG11 sing N N 434 VAL CG1 HG12 sing N N 435 VAL CG1 HG13 sing N N 436 VAL CG2 HG21 sing N N 437 VAL CG2 HG22 sing N N 438 VAL CG2 HG23 sing N N 439 VAL OXT HXT sing N N 440 ZBR C1 C2 doub Y N 441 ZBR C1 C6 sing Y N 442 ZBR C1 C7 sing N N 443 ZBR C2 C3 sing Y N 444 ZBR C3 C4 doub Y N 445 ZBR C3 C8 sing N N 446 ZBR C4 C5 sing Y N 447 ZBR C5 C6 doub Y N 448 ZBR C5 C9 sing N N 449 ZBR C7 BR2 sing N N 450 ZBR C8 BR1 sing N N 451 ZBR C9 BR3 sing N N 452 ZBR C2 H2 sing N N 453 ZBR C4 H4 sing N N 454 ZBR C6 H6 sing N N 455 ZBR C7 H7 sing N N 456 ZBR C7 H7A sing N N 457 ZBR C8 H8 sing N N 458 ZBR C8 H8A sing N N 459 ZBR C9 H9 sing N N 460 ZBR C9 H9A sing N N 461 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'SULFATE ION' SO4 4 'CHLORIDE ION' CL 5 'HEXAETHYLENE GLYCOL' P6G 6 '1,3,5-tris(bromomethyl)benzene' ZBR 7 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2NWN _pdbx_initial_refinement_model.details 'PDB ENTRY 2NWN' #