HEADER TRANSFERASE 12-MAR-13 4JLA TITLE CRYSTAL STRUCTURE OF ADENYLATE KINASE WITH 2 ADP'S IN THE ACTIVE SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENYLATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AK, ATP-AMP TRANSPHOSPHORYLASE; COMPND 5 EC: 2.7.4.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 3 ORGANISM_TAXID: 224324; SOURCE 4 STRAIN: VF5; SOURCE 5 GENE: ADK, AQ_078; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, ADP BINDING, PHOSPHORYL TRANSFER REACTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.-J.CHO,D.KERN REVDAT 4 28-FEB-24 4JLA 1 REMARK REVDAT 3 18-FEB-15 4JLA 1 JRNL REVDAT 2 28-JAN-15 4JLA 1 JRNL REVDAT 1 25-JUN-14 4JLA 0 JRNL AUTH S.J.KERNS,R.V.AGAFONOV,Y.J.CHO,F.PONTIGGIA,R.OTTEN, JRNL AUTH 2 D.V.PACHOV,S.KUTTER,L.A.PHUNG,P.N.MURPHY,V.THAI,T.ALBER, JRNL AUTH 3 M.F.HAGAN,D.KERN JRNL TITL THE ENERGY LANDSCAPE OF ADENYLATE KINASE DURING CATALYSIS. JRNL REF NAT.STRUCT.MOL.BIOL. V. 22 124 2015 JRNL REFN ISSN 1545-9993 JRNL PMID 25580578 JRNL DOI 10.1038/NSMB.2941 REMARK 2 REMARK 2 RESOLUTION. 2.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.2_860 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.4 REMARK 3 NUMBER OF REFLECTIONS : 22909 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1167 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.9094 - 4.2389 1.00 3194 154 0.1549 0.1840 REMARK 3 2 4.2389 - 3.3650 0.74 2240 115 0.1635 0.2262 REMARK 3 3 3.3650 - 2.9397 1.00 3009 150 0.1960 0.2647 REMARK 3 4 2.9397 - 2.6710 1.00 2725 159 0.2001 0.3317 REMARK 3 5 2.6710 - 2.4795 1.00 2705 133 0.2287 0.3321 REMARK 3 6 2.4795 - 2.3334 1.00 2956 167 0.2115 0.2960 REMARK 3 7 2.3334 - 2.2165 0.68 2000 105 0.2880 0.4507 REMARK 3 8 2.2165 - 2.1200 1.00 2913 184 0.2086 0.2860 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 35.50 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.620 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.780 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -9.69330 REMARK 3 B22 (A**2) : 13.90190 REMARK 3 B33 (A**2) : -4.20860 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3436 REMARK 3 ANGLE : 1.234 4657 REMARK 3 CHIRALITY : 0.067 514 REMARK 3 PLANARITY : 0.006 585 REMARK 3 DIHEDRAL : 17.088 1371 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:34) REMARK 3 ORIGIN FOR THE GROUP (A): 13.9493 -8.8921 -7.2495 REMARK 3 T TENSOR REMARK 3 T11: 0.1187 T22: 0.1620 REMARK 3 T33: 0.1764 T12: -0.0071 REMARK 3 T13: 0.0150 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 1.9839 L22: 2.0578 REMARK 3 L33: 2.9804 L12: -0.3524 REMARK 3 L13: -0.1162 L23: 0.1294 REMARK 3 S TENSOR REMARK 3 S11: -0.0109 S12: 0.0473 S13: -0.1844 REMARK 3 S21: -0.1327 S22: -0.0476 S23: 0.1425 REMARK 3 S31: 0.1364 S32: -0.3327 S33: 0.0321 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 35:63) REMARK 3 ORIGIN FOR THE GROUP (A): 32.6451 -3.1262 -1.7644 REMARK 3 T TENSOR REMARK 3 T11: 0.1370 T22: 0.2997 REMARK 3 T33: 0.2085 T12: -0.0030 REMARK 3 T13: 0.0481 T23: 0.0755 REMARK 3 L TENSOR REMARK 3 L11: 3.2252 L22: 3.1119 REMARK 3 L33: 3.4652 L12: -0.8466 REMARK 3 L13: -0.8027 L23: -1.3902 REMARK 3 S TENSOR REMARK 3 S11: -0.3451 S12: -0.6856 S13: -0.4393 REMARK 3 S21: 0.3496 S22: 0.1614 S23: -0.2588 REMARK 3 S31: -0.0876 S32: 0.4266 S33: 0.0882 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 64:94) REMARK 3 ORIGIN FOR THE GROUP (A): 20.8981 0.1364 -12.9242 REMARK 3 T TENSOR REMARK 3 T11: 0.1847 T22: 0.1566 REMARK 3 T33: 0.1811 T12: -0.0306 REMARK 3 T13: 0.0090 T23: 0.0315 REMARK 3 L TENSOR REMARK 3 L11: 3.1981 L22: 3.2178 REMARK 3 L33: 2.5059 L12: 0.1412 REMARK 3 L13: -0.4264 L23: -0.6034 REMARK 3 S TENSOR REMARK 3 S11: -0.1102 S12: 0.4989 S13: 0.2916 REMARK 3 S21: -0.3283 S22: 0.0360 S23: -0.1430 REMARK 3 S31: -0.3885 S32: 0.0030 S33: 0.0315 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 95:119) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2264 0.4186 -6.6520 REMARK 3 T TENSOR REMARK 3 T11: 0.1150 T22: 0.1334 REMARK 3 T33: 0.1475 T12: 0.0450 REMARK 3 T13: -0.0154 T23: 0.0206 REMARK 3 L TENSOR REMARK 3 L11: 2.9971 L22: 1.8564 REMARK 3 L33: 5.5444 L12: 0.2220 REMARK 3 L13: 0.3136 L23: -0.2869 REMARK 3 S TENSOR REMARK 3 S11: 0.0426 S12: -0.0601 S13: 0.2292 REMARK 3 S21: 0.0567 S22: -0.1083 S23: 0.0229 REMARK 3 S31: -0.3973 S32: 0.0449 S33: 0.0621 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 120:160) REMARK 3 ORIGIN FOR THE GROUP (A): 20.3705 -14.2128 8.3553 REMARK 3 T TENSOR REMARK 3 T11: 0.1998 T22: 0.2974 REMARK 3 T33: 0.2714 T12: 0.0408 REMARK 3 T13: -0.0291 T23: 0.0663 REMARK 3 L TENSOR REMARK 3 L11: 2.9579 L22: 4.3635 REMARK 3 L33: 2.6894 L12: -0.1122 REMARK 3 L13: 1.0737 L23: 0.6971 REMARK 3 S TENSOR REMARK 3 S11: 0.2202 S12: -0.3260 S13: -0.5647 REMARK 3 S21: 0.3813 S22: -0.0310 S23: -0.2980 REMARK 3 S31: 0.4327 S32: 0.0729 S33: -0.1658 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 161:190) REMARK 3 ORIGIN FOR THE GROUP (A): 10.8055 4.4511 -1.2299 REMARK 3 T TENSOR REMARK 3 T11: 0.1999 T22: 0.1485 REMARK 3 T33: 0.2123 T12: 0.0552 REMARK 3 T13: 0.0223 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 2.9081 L22: 2.2441 REMARK 3 L33: 2.4946 L12: 0.4197 REMARK 3 L13: 0.1047 L23: -0.4840 REMARK 3 S TENSOR REMARK 3 S11: 0.0379 S12: -0.1341 S13: 0.5441 REMARK 3 S21: 0.3506 S22: 0.0558 S23: 0.2727 REMARK 3 S31: -0.4312 S32: -0.3392 S33: -0.0303 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 191:203) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0263 -10.4255 -5.1873 REMARK 3 T TENSOR REMARK 3 T11: 0.1684 T22: 0.2808 REMARK 3 T33: 0.3146 T12: -0.0170 REMARK 3 T13: -0.0305 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 3.3792 L22: 4.2013 REMARK 3 L33: 4.1358 L12: 0.5898 REMARK 3 L13: -1.4059 L23: -3.2982 REMARK 3 S TENSOR REMARK 3 S11: -0.1480 S12: -0.0180 S13: -0.1062 REMARK 3 S21: -0.2324 S22: 0.3403 S23: 0.2055 REMARK 3 S31: 0.1306 S32: -1.3084 S33: -0.2340 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 1:18) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0351 -30.6933 -23.6430 REMARK 3 T TENSOR REMARK 3 T11: 0.1870 T22: 0.2922 REMARK 3 T33: 0.2088 T12: 0.0072 REMARK 3 T13: 0.0362 T23: -0.1394 REMARK 3 L TENSOR REMARK 3 L11: 1.3268 L22: 2.5982 REMARK 3 L33: 3.8073 L12: 1.6615 REMARK 3 L13: -0.3954 L23: -1.8775 REMARK 3 S TENSOR REMARK 3 S11: 0.0196 S12: 0.1607 S13: 0.0978 REMARK 3 S21: -0.2082 S22: 0.0832 S23: 0.2584 REMARK 3 S31: -0.0010 S32: -0.4079 S33: 0.0771 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 19:37) REMARK 3 ORIGIN FOR THE GROUP (A): 14.6119 -37.3897 -29.6197 REMARK 3 T TENSOR REMARK 3 T11: 0.1774 T22: 0.4159 REMARK 3 T33: 0.2774 T12: -0.0787 REMARK 3 T13: 0.0155 T23: -0.1297 REMARK 3 L TENSOR REMARK 3 L11: 2.3198 L22: 2.7684 REMARK 3 L33: 3.3872 L12: -0.4363 REMARK 3 L13: 1.0275 L23: -0.2851 REMARK 3 S TENSOR REMARK 3 S11: -0.1893 S12: 0.4204 S13: -0.6095 REMARK 3 S21: -0.2897 S22: 0.1376 S23: 0.5927 REMARK 3 S31: -0.1680 S32: -0.5903 S33: 0.1345 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 38:73) REMARK 3 ORIGIN FOR THE GROUP (A): 29.9761 -39.0849 -25.5765 REMARK 3 T TENSOR REMARK 3 T11: 0.1138 T22: 0.2981 REMARK 3 T33: 0.2111 T12: 0.0070 REMARK 3 T13: 0.0828 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 2.0529 L22: 3.7230 REMARK 3 L33: 5.1938 L12: 0.0554 REMARK 3 L13: 0.0458 L23: 1.0892 REMARK 3 S TENSOR REMARK 3 S11: -0.1093 S12: -0.0287 S13: -0.2551 REMARK 3 S21: 0.0139 S22: -0.2313 S23: -0.1387 REMARK 3 S31: -0.0770 S32: 0.0471 S33: 0.2778 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN B AND RESID 74:92) REMARK 3 ORIGIN FOR THE GROUP (A): 22.3082 -27.7404 -29.1064 REMARK 3 T TENSOR REMARK 3 T11: 0.1267 T22: 0.1706 REMARK 3 T33: 0.1115 T12: 0.0350 REMARK 3 T13: 0.0121 T23: -0.1136 REMARK 3 L TENSOR REMARK 3 L11: 4.4382 L22: 2.8556 REMARK 3 L33: 1.8710 L12: 0.4277 REMARK 3 L13: -1.4798 L23: 0.3008 REMARK 3 S TENSOR REMARK 3 S11: 0.0870 S12: 0.6651 S13: -0.0072 REMARK 3 S21: -0.4902 S22: -0.0703 S23: 0.1710 REMARK 3 S31: -0.1310 S32: -0.2084 S33: 0.0665 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN B AND RESID 93:125) REMARK 3 ORIGIN FOR THE GROUP (A): 16.6034 -28.4595 -21.9304 REMARK 3 T TENSOR REMARK 3 T11: 0.1615 T22: 0.2405 REMARK 3 T33: 0.1494 T12: -0.0024 REMARK 3 T13: -0.0055 T23: -0.1044 REMARK 3 L TENSOR REMARK 3 L11: 1.4292 L22: 3.6561 REMARK 3 L33: 2.0630 L12: -0.6694 REMARK 3 L13: 0.5179 L23: 0.4108 REMARK 3 S TENSOR REMARK 3 S11: 0.0396 S12: 0.0699 S13: 0.0460 REMARK 3 S21: 0.1636 S22: -0.1241 S23: 0.3705 REMARK 3 S31: -0.3010 S32: -0.1668 S33: 0.0894 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN B AND RESID 126:133) REMARK 3 ORIGIN FOR THE GROUP (A): 12.3037 -49.0075 -24.3520 REMARK 3 T TENSOR REMARK 3 T11: 1.0666 T22: 0.4845 REMARK 3 T33: 0.4738 T12: -0.0149 REMARK 3 T13: 0.2349 T23: -0.1499 REMARK 3 L TENSOR REMARK 3 L11: 4.6554 L22: 4.2457 REMARK 3 L33: 6.1876 L12: -1.3289 REMARK 3 L13: -0.2428 L23: 4.9554 REMARK 3 S TENSOR REMARK 3 S11: 0.5374 S12: 1.1105 S13: -0.6535 REMARK 3 S21: -0.7631 S22: -0.2640 S23: -0.0329 REMARK 3 S31: 0.4662 S32: 0.0944 S33: 0.2593 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN B AND RESID 134:151) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0263 -48.4214 -16.0001 REMARK 3 T TENSOR REMARK 3 T11: 0.6523 T22: 0.3056 REMARK 3 T33: 0.4761 T12: -0.1995 REMARK 3 T13: 0.0771 T23: -0.0473 REMARK 3 L TENSOR REMARK 3 L11: 3.7077 L22: 3.9063 REMARK 3 L33: 2.5232 L12: -1.6438 REMARK 3 L13: 1.4351 L23: 1.8635 REMARK 3 S TENSOR REMARK 3 S11: 0.0894 S12: -0.0598 S13: -1.1771 REMARK 3 S21: -0.5374 S22: -0.0978 S23: 0.3332 REMARK 3 S31: 0.6691 S32: -0.3720 S33: 0.0253 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN B AND RESID 152:181) REMARK 3 ORIGIN FOR THE GROUP (A): 22.1924 -28.3076 -14.3105 REMARK 3 T TENSOR REMARK 3 T11: 0.2124 T22: 0.3103 REMARK 3 T33: 0.1660 T12: -0.0731 REMARK 3 T13: 0.0587 T23: -0.0698 REMARK 3 L TENSOR REMARK 3 L11: 1.9549 L22: 6.5762 REMARK 3 L33: 3.5315 L12: -1.0756 REMARK 3 L13: 0.2105 L23: -2.4821 REMARK 3 S TENSOR REMARK 3 S11: -0.0443 S12: -0.2539 S13: 0.0436 REMARK 3 S21: 0.5430 S22: -0.2507 S23: -0.3434 REMARK 3 S31: -0.1894 S32: 0.2734 S33: 0.2471 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN B AND RESID 182:203) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1183 -26.1989 -21.2536 REMARK 3 T TENSOR REMARK 3 T11: 0.2263 T22: 0.4329 REMARK 3 T33: 0.4631 T12: 0.0308 REMARK 3 T13: 0.0316 T23: -0.1791 REMARK 3 L TENSOR REMARK 3 L11: 5.7216 L22: 2.4713 REMARK 3 L33: 4.4469 L12: 2.9529 REMARK 3 L13: 1.1050 L23: 1.0700 REMARK 3 S TENSOR REMARK 3 S11: 0.1135 S12: 0.0289 S13: 0.2270 REMARK 3 S21: 0.1489 S22: -0.4224 S23: 0.7818 REMARK 3 S31: -0.0758 S32: -1.2493 S33: 0.1340 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JLA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000078188. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23143 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.120 REMARK 200 RESOLUTION RANGE LOW (A) : 43.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.12 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE TRIHYDRATE, 0.2M REMARK 280 AMMONIUM ACETATE, 30% W/V POLYETHYLENE GLYCOL 4000 , PH 5.4, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.47000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.90000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.94500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.90000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.47000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.94500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 132 O HOH A 527 2.05 REMARK 500 O HOH B 421 O HOH B 429 2.18 REMARK 500 O HOH A 486 O HOH A 514 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 139 79.60 -155.89 REMARK 500 VAL B 112 128.73 -173.99 REMARK 500 ASN B 139 64.00 -163.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JL5 RELATED DB: PDB REMARK 900 RELATED ID: 4JLB RELATED DB: PDB REMARK 900 RELATED ID: 4JLD RELATED DB: PDB REMARK 900 RELATED ID: 4JLO RELATED DB: PDB REMARK 900 RELATED ID: 4JLP RELATED DB: PDB DBREF 4JLA A 1 203 UNP O66490 KAD_AQUAE 1 203 DBREF 4JLA B 1 203 UNP O66490 KAD_AQUAE 1 203 SEQRES 1 A 203 MET ILE LEU VAL PHE LEU GLY PRO PRO GLY ALA GLY LYS SEQRES 2 A 203 GLY THR GLN ALA LYS ARG LEU ALA LYS GLU LYS GLY PHE SEQRES 3 A 203 VAL HIS ILE SER THR GLY ASP ILE LEU ARG GLU ALA VAL SEQRES 4 A 203 GLN LYS GLY THR PRO LEU GLY LYS LYS ALA LYS GLU TYR SEQRES 5 A 203 MET GLU ARG GLY GLU LEU VAL PRO ASP ASP LEU ILE ILE SEQRES 6 A 203 ALA LEU ILE GLU GLU VAL PHE PRO LYS HIS GLY ASN VAL SEQRES 7 A 203 ILE PHE ASP GLY PHE PRO ARG THR VAL LYS GLN ALA GLU SEQRES 8 A 203 ALA LEU ASP GLU MET LEU GLU LYS LYS GLY LEU LYS VAL SEQRES 9 A 203 ASP HIS VAL LEU LEU PHE GLU VAL PRO ASP GLU VAL VAL SEQRES 10 A 203 ILE GLU ARG LEU SER GLY ARG ARG ILE ASN PRO GLU THR SEQRES 11 A 203 GLY GLU VAL TYR HIS VAL LYS TYR ASN PRO PRO PRO PRO SEQRES 12 A 203 GLY VAL LYS VAL ILE GLN ARG GLU ASP ASP LYS PRO GLU SEQRES 13 A 203 VAL ILE LYS LYS ARG LEU GLU VAL TYR ARG GLU GLN THR SEQRES 14 A 203 ALA PRO LEU ILE GLU TYR TYR LYS LYS LYS GLY ILE LEU SEQRES 15 A 203 ARG ILE ILE ASP ALA SER LYS PRO VAL GLU GLU VAL TYR SEQRES 16 A 203 ARG GLN VAL LEU GLU VAL ILE GLY SEQRES 1 B 203 MET ILE LEU VAL PHE LEU GLY PRO PRO GLY ALA GLY LYS SEQRES 2 B 203 GLY THR GLN ALA LYS ARG LEU ALA LYS GLU LYS GLY PHE SEQRES 3 B 203 VAL HIS ILE SER THR GLY ASP ILE LEU ARG GLU ALA VAL SEQRES 4 B 203 GLN LYS GLY THR PRO LEU GLY LYS LYS ALA LYS GLU TYR SEQRES 5 B 203 MET GLU ARG GLY GLU LEU VAL PRO ASP ASP LEU ILE ILE SEQRES 6 B 203 ALA LEU ILE GLU GLU VAL PHE PRO LYS HIS GLY ASN VAL SEQRES 7 B 203 ILE PHE ASP GLY PHE PRO ARG THR VAL LYS GLN ALA GLU SEQRES 8 B 203 ALA LEU ASP GLU MET LEU GLU LYS LYS GLY LEU LYS VAL SEQRES 9 B 203 ASP HIS VAL LEU LEU PHE GLU VAL PRO ASP GLU VAL VAL SEQRES 10 B 203 ILE GLU ARG LEU SER GLY ARG ARG ILE ASN PRO GLU THR SEQRES 11 B 203 GLY GLU VAL TYR HIS VAL LYS TYR ASN PRO PRO PRO PRO SEQRES 12 B 203 GLY VAL LYS VAL ILE GLN ARG GLU ASP ASP LYS PRO GLU SEQRES 13 B 203 VAL ILE LYS LYS ARG LEU GLU VAL TYR ARG GLU GLN THR SEQRES 14 B 203 ALA PRO LEU ILE GLU TYR TYR LYS LYS LYS GLY ILE LEU SEQRES 15 B 203 ARG ILE ILE ASP ALA SER LYS PRO VAL GLU GLU VAL TYR SEQRES 16 B 203 ARG GLN VAL LEU GLU VAL ILE GLY HET ADP A 301 27 HET ADP A 302 27 HET ADP B 301 27 HET ADP B 302 27 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 3 ADP 4(C10 H15 N5 O10 P2) FORMUL 7 HOH *227(H2 O) HELIX 1 1 GLY A 12 GLY A 25 1 14 HELIX 2 2 THR A 31 GLY A 42 1 12 HELIX 3 3 THR A 43 GLY A 56 1 14 HELIX 4 4 PRO A 60 PHE A 72 1 13 HELIX 5 5 THR A 86 LYS A 100 1 15 HELIX 6 6 PRO A 113 GLY A 123 1 11 HELIX 7 7 ARG A 150 ASP A 153 5 4 HELIX 8 8 LYS A 154 THR A 169 1 16 HELIX 9 9 PRO A 171 LYS A 178 1 8 HELIX 10 10 PRO A 190 GLY A 203 1 14 HELIX 11 11 GLY B 12 GLY B 25 1 14 HELIX 12 12 THR B 31 GLY B 42 1 12 HELIX 13 13 THR B 43 GLY B 56 1 14 HELIX 14 14 PRO B 60 PHE B 72 1 13 HELIX 15 15 THR B 86 LYS B 99 1 14 HELIX 16 16 PRO B 113 GLY B 123 1 11 HELIX 17 17 ARG B 150 ASP B 153 5 4 HELIX 18 18 LYS B 154 THR B 169 1 16 HELIX 19 19 ALA B 170 LYS B 178 1 9 HELIX 20 20 PRO B 190 GLY B 203 1 14 SHEET 1 A 5 VAL A 27 SER A 30 0 SHEET 2 A 5 VAL A 78 ASP A 81 1 O ASP A 81 N ILE A 29 SHEET 3 A 5 ILE A 2 LEU A 6 1 N LEU A 3 O PHE A 80 SHEET 4 A 5 HIS A 106 GLU A 111 1 O PHE A 110 N LEU A 6 SHEET 5 A 5 LEU A 182 ASP A 186 1 O ARG A 183 N LEU A 109 SHEET 1 B 2 ARG A 124 ILE A 126 0 SHEET 2 B 2 VAL A 133 HIS A 135 -1 O TYR A 134 N ARG A 125 SHEET 1 C 5 VAL B 27 SER B 30 0 SHEET 2 C 5 VAL B 78 ASP B 81 1 O ASP B 81 N ILE B 29 SHEET 3 C 5 ILE B 2 LEU B 6 1 N LEU B 3 O VAL B 78 SHEET 4 C 5 HIS B 106 GLU B 111 1 O PHE B 110 N LEU B 6 SHEET 5 C 5 LEU B 182 ASP B 186 1 O ILE B 185 N LEU B 109 SHEET 1 D 2 ARG B 124 ILE B 126 0 SHEET 2 D 2 VAL B 133 HIS B 135 -1 O TYR B 134 N ARG B 125 CISPEP 1 PHE A 83 PRO A 84 0 -3.83 CISPEP 2 PHE B 83 PRO B 84 0 -5.83 SITE 1 AC1 20 GLY A 10 ALA A 11 GLY A 12 LYS A 13 SITE 2 AC1 20 GLY A 14 THR A 15 ARG A 120 ARG A 124 SITE 3 AC1 20 VAL A 133 TYR A 134 HIS A 135 LYS A 189 SITE 4 AC1 20 PRO A 190 VAL A 191 ADP A 302 HOH A 418 SITE 5 AC1 20 HOH A 453 HOH A 514 HOH A 545 HOH A 546 SITE 1 AC2 23 PRO A 9 THR A 31 GLY A 32 LEU A 35 SITE 2 AC2 23 ARG A 36 MET A 53 GLU A 57 VAL A 59 SITE 3 AC2 23 ILE A 64 GLY A 82 ARG A 85 GLN A 89 SITE 4 AC2 23 ARG A 124 ARG A 150 ARG A 161 ADP A 301 SITE 5 AC2 23 HOH A 403 HOH A 405 HOH A 412 HOH A 419 SITE 6 AC2 23 HOH A 433 HOH A 529 HOH A 545 SITE 1 AC3 18 GLY B 10 ALA B 11 GLY B 12 LYS B 13 SITE 2 AC3 18 GLY B 14 THR B 15 ARG B 120 ARG B 124 SITE 3 AC3 18 VAL B 133 TYR B 134 HIS B 135 TYR B 138 SITE 4 AC3 18 LYS B 189 PRO B 190 VAL B 191 ADP B 302 SITE 5 AC3 18 HOH B 408 HOH B 465 SITE 1 AC4 23 PRO B 9 THR B 31 GLY B 32 LEU B 35 SITE 2 AC4 23 ARG B 36 MET B 53 GLU B 57 LEU B 58 SITE 3 AC4 23 VAL B 59 ILE B 64 GLY B 82 ARG B 85 SITE 4 AC4 23 GLN B 89 ARG B 124 ARG B 150 ARG B 161 SITE 5 AC4 23 ADP B 301 HOH B 407 HOH B 409 HOH B 420 SITE 6 AC4 23 HOH B 425 HOH B 431 HOH B 479 CRYST1 66.940 73.890 87.800 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014939 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013534 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011390 0.00000