HEADER TRANSFERASE/TRANSFERASE INHIBITOR 12-MAR-13 4JLG TITLE SETD7 IN COMPLEX WITH INHIBITOR (R)-PFI-2 AND S-ADENOSYL-METHIONINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE SETD7; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HISTONE H3-K4 METHYLTRANSFERASE SETD7, H3-K4-HMTASE SETD7, COMPND 5 LYSINE N-METHYLTRANSFERASE 7, SET DOMAIN-CONTAINING PROTEIN 7, COMPND 6 SET7/9; COMPND 7 EC: 2.1.1.43; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SETD7, KIAA1717, KMT7, SET7, SET9; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-V2R-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS METHYLTRANSFERASE, SET DOMAIN, HISTONE MODIFICATION, TRANSCRIPTION KEYWDS 2 REGULATION, HISTONE LYSINE METHYLTRANSFERASE, INHIBITOR, S-ADENOSYL- KEYWDS 3 L-METHIONINE, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 4 SGC, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.DONG,H.WU,H.ZENG,M.EL BAKKOURI,D.BARSYTE,M.VEDADI,J.TATLOCK,D.OWEN, AUTHOR 2 M.BUNNAGE,C.BOUNTRA,C.H.ARROWSMITH,A.M.EDWARDS,P.J.BROWN,STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (SGC) REVDAT 4 20-SEP-23 4JLG 1 REMARK SEQADV REVDAT 3 18-FEB-15 4JLG 1 JRNL REVDAT 2 09-APR-14 4JLG 1 TITLE REVDAT 1 17-APR-13 4JLG 0 JRNL AUTH D.BARSYTE-LOVEJOY,F.LI,M.J.OUDHOFF,J.H.TATLOCK,A.DONG, JRNL AUTH 2 H.ZENG,H.WU,S.A.FREEMAN,M.SCHAPIRA,G.A.SENISTERRA, JRNL AUTH 3 E.KUZNETSOVA,R.MARCELLUS,A.ALLALI-HASSANI,S.KENNEDY, JRNL AUTH 4 J.P.LAMBERT,A.L.COUZENS,A.AMAN,A.C.GINGRAS,R.AL-AWAR, JRNL AUTH 5 P.V.FISH,B.S.GERSTENBERGER,L.ROBERTS,C.L.BENN,R.L.GRIMLEY, JRNL AUTH 6 M.J.BRAAM,F.M.ROSSI,M.SUDOL,P.J.BROWN,M.E.BUNNAGE,D.R.OWEN, JRNL AUTH 7 C.ZAPH,M.VEDADI,C.H.ARROWSMITH JRNL TITL (R)-PFI-2 IS A POTENT AND SELECTIVE INHIBITOR OF SETD7 JRNL TITL 2 METHYLTRANSFERASE ACTIVITY IN CELLS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 12853 2014 JRNL REFN ISSN 0027-8424 JRNL PMID 25136132 JRNL DOI 10.1073/PNAS.1407358111 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 45881 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1454 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2531 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE SET COUNT : 92 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3772 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 147 REMARK 3 SOLVENT ATOMS : 394 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.46000 REMARK 3 B22 (A**2) : 0.16000 REMARK 3 B33 (A**2) : 0.67000 REMARK 3 B12 (A**2) : 0.59000 REMARK 3 B13 (A**2) : -1.54000 REMARK 3 B23 (A**2) : -2.99000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.165 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.144 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.111 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.751 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4072 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5581 ; 1.097 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 513 ; 5.583 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 171 ;31.745 ;24.211 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 594 ;11.943 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ; 7.263 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 601 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3157 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2515 ; 0.567 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4072 ; 1.063 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1557 ; 1.476 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1500 ; 2.404 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JLG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000078194. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03320 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45882 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.896 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 38.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.22400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: PDB ENTRY 1O9S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23% PEG 3500, 0.2 M LITHIUM SULFATE, REMARK 280 0.1 M BISTRIS PH 6.5, VAPOR DIFFUSION HANGING DROP, TEMPERATURE REMARK 280 291K, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 109 REMARK 465 TYR A 110 REMARK 465 LYS A 111 REMARK 465 ASP A 112 REMARK 465 ASN A 113 REMARK 465 ILE A 114 REMARK 465 ARG A 115 REMARK 465 HIS A 116 REMARK 465 GLN A 364 REMARK 465 GLN A 365 REMARK 465 LYS A 366 REMARK 465 HIS A 367 REMARK 465 HIS A 368 REMARK 465 HIS A 369 REMARK 465 HIS A 370 REMARK 465 HIS A 371 REMARK 465 HIS A 372 REMARK 465 GLN B 109 REMARK 465 TYR B 110 REMARK 465 LYS B 111 REMARK 465 ASP B 112 REMARK 465 ASN B 113 REMARK 465 ILE B 114 REMARK 465 ARG B 115 REMARK 465 HIS B 116 REMARK 465 GLY B 117 REMARK 465 GLN B 364 REMARK 465 GLN B 365 REMARK 465 LYS B 366 REMARK 465 HIS B 367 REMARK 465 HIS B 368 REMARK 465 HIS B 369 REMARK 465 HIS B 370 REMARK 465 HIS B 371 REMARK 465 HIS B 372 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 135 CG CD OE1 OE2 REMARK 470 ASP A 136 CG OD1 OD2 REMARK 470 LYS A 143 NZ REMARK 470 ARG A 152 CD NE CZ NH1 NH2 REMARK 470 GLU A 176 CD OE1 OE2 REMARK 470 GLN A 253 CD OE1 NE2 REMARK 470 TRP A 260 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 260 CZ3 CH2 REMARK 470 GLU A 272 CG CD OE1 OE2 REMARK 470 GLU A 326 OE1 OE2 REMARK 470 GLU A 348 CG CD OE1 OE2 REMARK 470 LYS A 358 CG CD CE NZ REMARK 470 GLU B 135 CG CD OE1 OE2 REMARK 470 ASP B 136 CG OD1 OD2 REMARK 470 LYS B 143 NZ REMARK 470 ARG B 152 CD NE CZ NH1 NH2 REMARK 470 GLU B 176 CD OE1 OE2 REMARK 470 GLN B 253 CG CD OE1 NE2 REMARK 470 GLU B 271 OE1 OE2 REMARK 470 GLU B 272 CG CD OE1 OE2 REMARK 470 GLU B 351 CG CD OE1 OE2 REMARK 470 VAL B 355 CG1 CG2 REMARK 470 LYS B 358 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE MET B 307 UNK UNX B 404 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 152 -45.05 -136.88 REMARK 500 ASP A 194 53.98 -148.76 REMARK 500 THR A 197 -169.31 -117.69 REMARK 500 SER A 202 148.24 -171.57 REMARK 500 THR A 300 69.93 -119.58 REMARK 500 ARG B 152 -47.45 -139.75 REMARK 500 ASP B 194 54.39 -150.92 REMARK 500 THR B 197 -163.15 -111.24 REMARK 500 SER B 202 143.76 -176.74 REMARK 500 VAL B 277 76.31 -119.52 REMARK 500 THR B 300 64.82 -116.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1L8 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1L8 B 402 DBREF 4JLG A 109 366 UNP Q8WTS6 SETD7_HUMAN 109 366 DBREF 4JLG B 109 366 UNP Q8WTS6 SETD7_HUMAN 109 366 SEQADV 4JLG HIS A 367 UNP Q8WTS6 EXPRESSION TAG SEQADV 4JLG HIS A 368 UNP Q8WTS6 EXPRESSION TAG SEQADV 4JLG HIS A 369 UNP Q8WTS6 EXPRESSION TAG SEQADV 4JLG HIS A 370 UNP Q8WTS6 EXPRESSION TAG SEQADV 4JLG HIS A 371 UNP Q8WTS6 EXPRESSION TAG SEQADV 4JLG HIS A 372 UNP Q8WTS6 EXPRESSION TAG SEQADV 4JLG HIS B 367 UNP Q8WTS6 EXPRESSION TAG SEQADV 4JLG HIS B 368 UNP Q8WTS6 EXPRESSION TAG SEQADV 4JLG HIS B 369 UNP Q8WTS6 EXPRESSION TAG SEQADV 4JLG HIS B 370 UNP Q8WTS6 EXPRESSION TAG SEQADV 4JLG HIS B 371 UNP Q8WTS6 EXPRESSION TAG SEQADV 4JLG HIS B 372 UNP Q8WTS6 EXPRESSION TAG SEQRES 1 A 264 GLN TYR LYS ASP ASN ILE ARG HIS GLY VAL CYS TRP ILE SEQRES 2 A 264 TYR TYR PRO ASP GLY GLY SER LEU VAL GLY GLU VAL ASN SEQRES 3 A 264 GLU ASP GLY GLU MET THR GLY GLU LYS ILE ALA TYR VAL SEQRES 4 A 264 TYR PRO ASP GLU ARG THR ALA LEU TYR GLY LYS PHE ILE SEQRES 5 A 264 ASP GLY GLU MET ILE GLU GLY LYS LEU ALA THR LEU MET SEQRES 6 A 264 SER THR GLU GLU GLY ARG PRO HIS PHE GLU LEU MET PRO SEQRES 7 A 264 GLY ASN SER VAL TYR HIS PHE ASP LYS SER THR SER SER SEQRES 8 A 264 CYS ILE SER THR ASN ALA LEU LEU PRO ASP PRO TYR GLU SEQRES 9 A 264 SER GLU ARG VAL TYR VAL ALA GLU SER LEU ILE SER SER SEQRES 10 A 264 ALA GLY GLU GLY LEU PHE SER LYS VAL ALA VAL GLY PRO SEQRES 11 A 264 ASN THR VAL MET SER PHE TYR ASN GLY VAL ARG ILE THR SEQRES 12 A 264 HIS GLN GLU VAL ASP SER ARG ASP TRP ALA LEU ASN GLY SEQRES 13 A 264 ASN THR LEU SER LEU ASP GLU GLU THR VAL ILE ASP VAL SEQRES 14 A 264 PRO GLU PRO TYR ASN HIS VAL SER LYS TYR CYS ALA SER SEQRES 15 A 264 LEU GLY HIS LYS ALA ASN HIS SER PHE THR PRO ASN CYS SEQRES 16 A 264 ILE TYR ASP MET PHE VAL HIS PRO ARG PHE GLY PRO ILE SEQRES 17 A 264 LYS CYS ILE ARG THR LEU ARG ALA VAL GLU ALA ASP GLU SEQRES 18 A 264 GLU LEU THR VAL ALA TYR GLY TYR ASP HIS SER PRO PRO SEQRES 19 A 264 GLY LYS SER GLY PRO GLU ALA PRO GLU TRP TYR GLN VAL SEQRES 20 A 264 GLU LEU LYS ALA PHE GLN ALA THR GLN GLN LYS HIS HIS SEQRES 21 A 264 HIS HIS HIS HIS SEQRES 1 B 264 GLN TYR LYS ASP ASN ILE ARG HIS GLY VAL CYS TRP ILE SEQRES 2 B 264 TYR TYR PRO ASP GLY GLY SER LEU VAL GLY GLU VAL ASN SEQRES 3 B 264 GLU ASP GLY GLU MET THR GLY GLU LYS ILE ALA TYR VAL SEQRES 4 B 264 TYR PRO ASP GLU ARG THR ALA LEU TYR GLY LYS PHE ILE SEQRES 5 B 264 ASP GLY GLU MET ILE GLU GLY LYS LEU ALA THR LEU MET SEQRES 6 B 264 SER THR GLU GLU GLY ARG PRO HIS PHE GLU LEU MET PRO SEQRES 7 B 264 GLY ASN SER VAL TYR HIS PHE ASP LYS SER THR SER SER SEQRES 8 B 264 CYS ILE SER THR ASN ALA LEU LEU PRO ASP PRO TYR GLU SEQRES 9 B 264 SER GLU ARG VAL TYR VAL ALA GLU SER LEU ILE SER SER SEQRES 10 B 264 ALA GLY GLU GLY LEU PHE SER LYS VAL ALA VAL GLY PRO SEQRES 11 B 264 ASN THR VAL MET SER PHE TYR ASN GLY VAL ARG ILE THR SEQRES 12 B 264 HIS GLN GLU VAL ASP SER ARG ASP TRP ALA LEU ASN GLY SEQRES 13 B 264 ASN THR LEU SER LEU ASP GLU GLU THR VAL ILE ASP VAL SEQRES 14 B 264 PRO GLU PRO TYR ASN HIS VAL SER LYS TYR CYS ALA SER SEQRES 15 B 264 LEU GLY HIS LYS ALA ASN HIS SER PHE THR PRO ASN CYS SEQRES 16 B 264 ILE TYR ASP MET PHE VAL HIS PRO ARG PHE GLY PRO ILE SEQRES 17 B 264 LYS CYS ILE ARG THR LEU ARG ALA VAL GLU ALA ASP GLU SEQRES 18 B 264 GLU LEU THR VAL ALA TYR GLY TYR ASP HIS SER PRO PRO SEQRES 19 B 264 GLY LYS SER GLY PRO GLU ALA PRO GLU TRP TYR GLN VAL SEQRES 20 B 264 GLU LEU LYS ALA PHE GLN ALA THR GLN GLN LYS HIS HIS SEQRES 21 B 264 HIS HIS HIS HIS HET SAM A 401 27 HET 1L8 A 402 34 HET UNX A 403 1 HET UNX A 404 1 HET UNX A 405 1 HET UNX A 406 1 HET UNX A 407 1 HET UNX A 408 1 HET UNX A 409 1 HET UNX A 410 1 HET UNX A 411 1 HET UNX A 412 1 HET UNX A 413 1 HET UNX A 414 1 HET UNX A 415 1 HET UNX A 416 1 HET UNX A 417 1 HET UNX A 418 1 HET UNX A 419 1 HET SAM B 401 27 HET 1L8 B 402 34 HET UNX B 403 1 HET UNX B 404 1 HET UNX B 405 1 HET UNX B 406 1 HET UNX B 407 1 HET UNX B 408 1 HET UNX B 409 1 HET UNX B 410 1 HETNAM SAM S-ADENOSYLMETHIONINE HETNAM 1L8 8-FLUORO-N-{(2R)-1-OXO-1-(PYRROLIDIN-1-YL)-3-[3- HETNAM 2 1L8 (TRIFLUOROMETHYL)PHENYL]PROPAN-2-YL}-1,2,3,4- HETNAM 3 1L8 TETRAHYDROISOQUINOLINE-6-SULFONAMIDE HETNAM UNX UNKNOWN ATOM OR ION FORMUL 3 SAM 2(C15 H22 N6 O5 S) FORMUL 4 1L8 2(C23 H25 F4 N3 O3 S) FORMUL 5 UNX 25(X) FORMUL 32 HOH *394(H2 O) HELIX 1 1 ASP A 209 GLU A 214 1 6 HELIX 2 2 HIS A 252 ARG A 258 1 7 HELIX 3 3 ASP A 259 ASN A 263 5 5 HELIX 4 4 LEU A 291 ALA A 295 5 5 HELIX 5 5 PRO A 350 ALA A 362 1 13 HELIX 6 6 ASP B 209 GLU B 214 1 6 HELIX 7 7 HIS B 252 ARG B 258 1 7 HELIX 8 8 ASP B 259 ASN B 263 5 5 HELIX 9 9 LEU B 291 ALA B 295 5 5 HELIX 10 10 PRO B 350 ALA B 362 1 13 SHEET 1 A 6 CYS A 119 TYR A 122 0 SHEET 2 A 6 SER A 128 GLY A 131 -1 O GLY A 131 N CYS A 119 SHEET 3 A 6 GLY A 141 VAL A 147 -1 O VAL A 147 N SER A 128 SHEET 4 A 6 THR A 153 ILE A 160 -1 O GLY A 157 N ILE A 144 SHEET 5 A 6 GLU A 163 GLU A 176 -1 O LYS A 168 N TYR A 156 SHEET 6 A 6 ARG A 179 LEU A 184 -1 O GLU A 183 N THR A 171 SHEET 1 B 6 CYS A 119 TYR A 122 0 SHEET 2 B 6 SER A 128 GLY A 131 -1 O GLY A 131 N CYS A 119 SHEET 3 B 6 GLY A 141 VAL A 147 -1 O VAL A 147 N SER A 128 SHEET 4 B 6 THR A 153 ILE A 160 -1 O GLY A 157 N ILE A 144 SHEET 5 B 6 GLU A 163 GLU A 176 -1 O LYS A 168 N TYR A 156 SHEET 6 B 6 VAL A 190 TYR A 191 -1 O TYR A 191 N GLY A 167 SHEET 1 C 4 VAL A 216 GLU A 220 0 SHEET 2 C 4 GLU A 228 SER A 232 -1 O GLY A 229 N ALA A 219 SHEET 3 C 4 GLU A 330 VAL A 333 -1 O LEU A 331 N LEU A 230 SHEET 4 C 4 ASN A 296 HIS A 297 1 N ASN A 296 O VAL A 333 SHEET 1 D 3 VAL A 241 TYR A 245 0 SHEET 2 D 3 GLY A 314 THR A 321 -1 O ILE A 319 N MET A 242 SHEET 3 D 3 CYS A 303 HIS A 310 -1 N ASP A 306 O CYS A 318 SHEET 1 E 3 VAL A 248 THR A 251 0 SHEET 2 E 3 THR A 273 ASP A 276 -1 O VAL A 274 N ILE A 250 SHEET 3 E 3 LEU A 267 SER A 268 -1 N LEU A 267 O ILE A 275 SHEET 1 F 2 PRO A 342 GLY A 343 0 SHEET 2 F 2 GLY A 346 PRO A 347 -1 O GLY A 346 N GLY A 343 SHEET 1 G 6 CYS B 119 TYR B 122 0 SHEET 2 G 6 SER B 128 GLY B 131 -1 O LEU B 129 N ILE B 121 SHEET 3 G 6 GLY B 141 VAL B 147 -1 O VAL B 147 N SER B 128 SHEET 4 G 6 THR B 153 ILE B 160 -1 O GLY B 157 N ILE B 144 SHEET 5 G 6 GLU B 163 GLU B 176 -1 O LYS B 168 N TYR B 156 SHEET 6 G 6 ARG B 179 LEU B 184 -1 O GLU B 183 N THR B 171 SHEET 1 H 6 CYS B 119 TYR B 122 0 SHEET 2 H 6 SER B 128 GLY B 131 -1 O LEU B 129 N ILE B 121 SHEET 3 H 6 GLY B 141 VAL B 147 -1 O VAL B 147 N SER B 128 SHEET 4 H 6 THR B 153 ILE B 160 -1 O GLY B 157 N ILE B 144 SHEET 5 H 6 GLU B 163 GLU B 176 -1 O LYS B 168 N TYR B 156 SHEET 6 H 6 VAL B 190 TYR B 191 -1 O TYR B 191 N GLY B 167 SHEET 1 I 4 VAL B 216 GLU B 220 0 SHEET 2 I 4 GLU B 228 SER B 232 -1 O GLY B 229 N ALA B 219 SHEET 3 I 4 GLU B 330 VAL B 333 -1 O LEU B 331 N LEU B 230 SHEET 4 I 4 ASN B 296 HIS B 297 1 N ASN B 296 O VAL B 333 SHEET 1 J 3 VAL B 241 TYR B 245 0 SHEET 2 J 3 GLY B 314 THR B 321 -1 O ILE B 319 N MET B 242 SHEET 3 J 3 CYS B 303 HIS B 310 -1 N ASP B 306 O CYS B 318 SHEET 1 K 3 VAL B 248 THR B 251 0 SHEET 2 K 3 THR B 273 ASP B 276 -1 O VAL B 274 N ILE B 250 SHEET 3 K 3 LEU B 267 SER B 268 -1 N LEU B 267 O ILE B 275 SHEET 1 L 2 PRO B 342 GLY B 343 0 SHEET 2 L 2 GLY B 346 PRO B 347 -1 O GLY B 346 N GLY B 343 CISPEP 1 GLU A 279 PRO A 280 0 0.41 CISPEP 2 GLU B 279 PRO B 280 0 0.50 SITE 1 AC1 21 SER A 225 ALA A 226 GLU A 228 GLY A 264 SITE 2 AC1 21 ASN A 265 HIS A 293 LYS A 294 ALA A 295 SITE 3 AC1 21 ASN A 296 HIS A 297 TYR A 335 TRP A 352 SITE 4 AC1 21 GLU A 356 1L8 A 402 HOH A 513 HOH A 535 SITE 5 AC1 21 HOH A 563 HOH A 567 HOH A 574 HOH A 583 SITE 6 AC1 21 HOH A 695 SITE 1 AC2 15 TYR A 245 HIS A 252 VAL A 255 ASP A 256 SITE 2 AC2 15 THR A 266 LEU A 267 SER A 268 TYR A 305 SITE 3 AC2 15 TYR A 335 GLY A 336 TYR A 337 HIS A 339 SITE 4 AC2 15 SER A 340 SAM A 401 HOH A 658 SITE 1 AC3 21 SER B 225 ALA B 226 GLU B 228 GLY B 264 SITE 2 AC3 21 ASN B 265 HIS B 293 LYS B 294 ALA B 295 SITE 3 AC3 21 ASN B 296 HIS B 297 TYR B 335 TRP B 352 SITE 4 AC3 21 GLU B 356 1L8 B 402 HOH B 519 HOH B 535 SITE 5 AC3 21 HOH B 559 HOH B 563 HOH B 584 HOH B 607 SITE 6 AC3 21 HOH B 619 SITE 1 AC4 18 TYR B 245 HIS B 252 VAL B 255 ASP B 256 SITE 2 AC4 18 TRP B 260 GLY B 264 THR B 266 LEU B 267 SITE 3 AC4 18 SER B 268 VAL B 274 TYR B 305 TYR B 335 SITE 4 AC4 18 GLY B 336 TYR B 337 HIS B 339 SER B 340 SITE 5 AC4 18 SAM B 401 HOH B 542 CRYST1 46.742 57.984 64.932 83.33 71.42 70.93 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021394 -0.007397 -0.007095 0.00000 SCALE2 0.000000 0.018248 -0.000244 0.00000 SCALE3 0.000000 0.000000 0.016249 0.00000