HEADER LYASE 14-MAR-13 4JN8 TITLE CRYSTAL STRUCTURE OF AN ENOLASE (PUTATIVE GALACTARATE DEHYDRATASE, TITLE 2 TARGET EFI-500740) FROM AGROBACTERIUM RADIOBACTER, BOUND SULFATE, NO TITLE 3 METAL ION, ORDERED ACTIVE SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENOLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM RADIOBACTER K84; SOURCE 3 ORGANISM_TAXID: 311403; SOURCE 4 STRAIN: K84; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS ENOLASE, PUTATIVE GALACTARATE DEHYDRATASE, ENZYME FUNCTION KEYWDS 2 INITIATIVE, EFI, STRUCTURAL GENOMICS, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,F.GRONINGER-POE,J.T.BOUVIER,D.WICHELECKI,L.L.MORISCO, AUTHOR 2 S.R.WASSERMAN,S.SOJITRA,E.WASHINGTON,A.SCOTT GLENN,S.CHOWDHURY, AUTHOR 3 B.EVANS,J.HAMMONDS,M.STEAD,B.HILLERICH,J.LOVE,R.D.SEIDEL,H.J.IMKER, AUTHOR 4 J.A.GERLT,S.C.ALMO,ENZYME FUNCTION INITIATIVE (EFI) REVDAT 2 20-SEP-23 4JN8 1 REMARK REVDAT 1 03-APR-13 4JN8 0 JRNL AUTH M.W.VETTING,F.GRONINGER-POE,J.T.BOUVIER,D.WICHELECKI, JRNL AUTH 2 L.L.MORISCO,S.R.WASSERMAN,S.SOJITRA,E.WASHINGTON, JRNL AUTH 3 A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,J.HAMMONDS,M.STEAD, JRNL AUTH 4 B.HILLERICH,J.LOVE,R.D.SEIDEL,H.J.IMKER,J.A.GERLT,S.C.ALMO, JRNL AUTH 5 ENZYME FUNCTION INITIATIVE (EFI) JRNL TITL CRYSTAL STRUCTURE OF AN ENOLASE (PUTATIVE GALACTARATE JRNL TITL 2 DEHYDRATASE, TARGET EFI-500740) FROM AGROBACTERIUM JRNL TITL 3 RADIOBACTER, BOUND SULFATE, NO METAL ION, ORDERED ACTIVE JRNL TITL 4 SITE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 87337 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.129 REMARK 3 R VALUE (WORKING SET) : 0.129 REMARK 3 FREE R VALUE : 0.146 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 4380 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 21.1919 - 4.3381 1.00 2968 161 0.1867 0.2036 REMARK 3 2 4.3381 - 3.4481 1.00 2832 170 0.1198 0.1275 REMARK 3 3 3.4481 - 3.0136 1.00 2819 153 0.1280 0.1298 REMARK 3 4 3.0136 - 2.7387 1.00 2828 133 0.1216 0.1412 REMARK 3 5 2.7387 - 2.5428 1.00 2778 157 0.1142 0.1283 REMARK 3 6 2.5428 - 2.3931 1.00 2786 140 0.1124 0.1304 REMARK 3 7 2.3931 - 2.2734 1.00 2757 158 0.1085 0.1318 REMARK 3 8 2.2734 - 2.1745 1.00 2774 144 0.1062 0.1183 REMARK 3 9 2.1745 - 2.0909 1.00 2769 168 0.1057 0.1213 REMARK 3 10 2.0909 - 2.0188 1.00 2773 134 0.1075 0.1552 REMARK 3 11 2.0188 - 1.9557 1.00 2785 133 0.1132 0.1234 REMARK 3 12 1.9557 - 1.8998 1.00 2730 147 0.1152 0.1309 REMARK 3 13 1.8998 - 1.8498 1.00 2759 149 0.1149 0.1395 REMARK 3 14 1.8498 - 1.8047 1.00 2746 149 0.1118 0.1169 REMARK 3 15 1.8047 - 1.7637 1.00 2727 162 0.1122 0.1294 REMARK 3 16 1.7637 - 1.7262 1.00 2748 134 0.1161 0.1444 REMARK 3 17 1.7262 - 1.6917 1.00 2758 137 0.1257 0.1551 REMARK 3 18 1.6917 - 1.6598 1.00 2754 142 0.1252 0.1373 REMARK 3 19 1.6598 - 1.6302 1.00 2757 143 0.1296 0.1583 REMARK 3 20 1.6302 - 1.6025 1.00 2760 141 0.1285 0.1528 REMARK 3 21 1.6025 - 1.5767 1.00 2741 138 0.1322 0.1555 REMARK 3 22 1.5767 - 1.5524 1.00 2732 135 0.1339 0.1644 REMARK 3 23 1.5524 - 1.5296 1.00 2770 130 0.1378 0.1554 REMARK 3 24 1.5296 - 1.5081 1.00 2721 139 0.1450 0.1411 REMARK 3 25 1.5081 - 1.4877 1.00 2765 133 0.1434 0.1806 REMARK 3 26 1.4877 - 1.4684 1.00 2726 161 0.1555 0.1782 REMARK 3 27 1.4684 - 1.4500 1.00 2740 122 0.1622 0.1699 REMARK 3 28 1.4500 - 1.4326 1.00 2710 158 0.1712 0.2196 REMARK 3 29 1.4326 - 1.4159 1.00 2705 157 0.1803 0.2064 REMARK 3 30 1.4159 - 1.4000 1.00 2739 152 0.1813 0.1941 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.070 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 12.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3323 REMARK 3 ANGLE : 1.302 4520 REMARK 3 CHIRALITY : 0.077 466 REMARK 3 PLANARITY : 0.008 600 REMARK 3 DIHEDRAL : 12.617 1233 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JN8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000078258. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87340 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 87.712 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.70 REMARK 200 R MERGE (I) : 0.13600 REMARK 200 R SYM (I) : 0.13600 REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.40 REMARK 200 R MERGE FOR SHELL (I) : 0.72400 REMARK 200 R SYM FOR SHELL (I) : 0.72400 REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: PDB ENTRY 3RR1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (20 MM TRIS PH 7.9, 5 MM REMARK 280 MGCL2, 0.1 M NACL); RESERVOIR (2.0 M AMMONIUM SULFATE, 0.1 M BIS- REMARK 280 TRIS PH 5.5); CRYOPROTECTION (RESERVOIR, + 20% ETHYLENE GLYCOL REMARK 280 AND 50 MM MGCL), TEMPERATURE 298K, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 62.02200 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 62.02200 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 57.32000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 62.02200 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 62.02200 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 57.32000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 62.02200 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 62.02200 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 57.32000 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 62.02200 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 62.02200 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 57.32000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 62.02200 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 62.02200 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 57.32000 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 62.02200 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 62.02200 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 57.32000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 62.02200 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 62.02200 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 57.32000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 62.02200 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 62.02200 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 57.32000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS AN OCTAMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 59830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 80770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -474.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 743 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1059 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H LEU A 320 HO2 EDO A 406 1.20 REMARK 500 O HOH A 649 O HOH A 737 1.90 REMARK 500 O HOH A 848 O HOH A 986 2.07 REMARK 500 O HOH A 912 O HOH A 945 2.07 REMARK 500 NH2 ARG A 336 O HOH A 707 2.11 REMARK 500 O HOH A 602 O HOH A 933 2.16 REMARK 500 O HOH A 850 O HOH A 1013 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP A 182 O HOH A 731 3555 1.93 REMARK 500 O HOH A 722 O HOH A 806 6555 2.03 REMARK 500 O HOH A 854 O HOH A 854 6555 2.06 REMARK 500 O HOH A 926 O HOH A 927 16555 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 11 -153.41 -133.91 REMARK 500 THR A 11 -153.41 -126.69 REMARK 500 LYS A 14 -114.32 59.05 REMARK 500 ARG A 75 -60.69 65.03 REMARK 500 TYR A 124 -12.69 81.81 REMARK 500 ASP A 211 65.57 65.36 REMARK 500 ASN A 293 72.23 -158.66 REMARK 500 ALA A 393 -126.12 -103.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 410 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-500740 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 4JN7 RELATED DB: PDB DBREF 4JN8 A 1 395 UNP B9JNP7 B9JNP7_AGRRK 1 395 SEQRES 1 A 395 MET LYS ILE ASP ARG MET ARG VAL PHE MET THR ARG ASP SEQRES 2 A 395 LYS ASP ARG PRO ARG VAL ILE VAL ALA LEU ASP THR ASP SEQRES 3 A 395 ASP GLY LEU THR GLY TRP GLY GLU CYS TYR ASN HIS GLY SEQRES 4 A 395 PRO ASP LYS ALA LEU PRO PRO ILE LEU ASP TYR LEU TYR SEQRES 5 A 395 GLY PHE LEU SER GLY GLN ASP PRO THR ARG ILE ASP TYR SEQRES 6 A 395 LEU VAL ASN LEU LEU ILE GLN GLN SER ARG PHE PRO PRO SEQRES 7 A 395 GLY ALA LEU GLY LEU SER ALA ILE SER ALA LEU ASP HIS SEQRES 8 A 395 CYS LEU TRP ASP LEU SER ALA LYS ALA ALA ASN VAL PRO SEQRES 9 A 395 VAL TYR LYS LEU LEU GLY GLY ALA VAL ARG ASP ARG VAL SEQRES 10 A 395 LYS VAL TYR ALA GLY VAL TYR THR ALA PRO ASP ALA PRO SEQRES 11 A 395 ALA ALA ARG ASP GLU PHE ASP ARG LEU ASN ALA GLU TRP SEQRES 12 A 395 GLY PHE THR ALA PHE LYS LEU SER PRO TRP ARG VAL ASP SEQRES 13 A 395 ILE HIS ALA HIS ARG TRP GLY ASN VAL VAL LYS ALA SER SEQRES 14 A 395 ALA ASP TYR PHE ARG SER LEU ARG GLU THR VAL ARG ASP SEQRES 15 A 395 ASP TYR GLU ILE ALA PHE ASP ALA HIS ALA GLN ILE PHE SEQRES 16 A 395 GLU PRO VAL ALA ALA ARG GLN LEU GLY ASN ALA LEU ALA SEQRES 17 A 395 PRO TYR ASP PRO LEU PHE TYR GLU GLU PRO LEU ARG PRO SEQRES 18 A 395 GLU ASN ILE ASP MET TRP GLY ASP LEU LYS GLN GLY LEU SEQRES 19 A 395 ASN CYS VAL LEU ALA THR GLY GLU SER LEU TYR ASN ARG SEQRES 20 A 395 ASN GLU PHE LEU ARG LEU LEU GLN VAL LYS GLY ALA ASP SEQRES 21 A 395 LEU ILE GLN PRO ASP ILE CYS VAL VAL GLY GLY ILE SER SEQRES 22 A 395 GLU MET ARG ARG ILE ALA THR LEU ALA GLU ALA TYR PHE SEQRES 23 A 395 VAL GLY VAL ALA PRO HIS ASN PRO MET GLY PRO LEU ALA SEQRES 24 A 395 THR ALA VAL ASN VAL HIS PHE SER ALA ALA THR GLN ASN SEQRES 25 A 395 PHE ARG ILE LEU GLU TYR ARG LEU PRO LYS GLY GLN ALA SEQRES 26 A 395 TYR VAL TYR GLY GLY LYS ASP ILE GLU LYS ARG GLN GLY SEQRES 27 A 395 GLU THR ARG TYR VAL VAL ASP PRO TYR LEU PRO LYS ASP SEQRES 28 A 395 GLY TYR LEU GLU LEU ARG PRO ASP ARG PRO GLY TRP GLY SEQRES 29 A 395 VAL GLU MET ASP GLU LYS ALA MET GLU GLU GLU GLY TYR SEQRES 30 A 395 ILE HIS TRP GLN ARG ARG VAL PRO LYS ARG PRO ASP GLY SEQRES 31 A 395 SER TYR ALA PHE ALA HET SO4 A 401 5 HET SO4 A 402 5 HET SO4 A 403 5 HET EDO A 404 10 HET EDO A 405 10 HET EDO A 406 10 HET EDO A 407 10 HET EDO A 408 10 HET CL A 409 1 HET CL A 410 1 HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 SO4 3(O4 S 2-) FORMUL 5 EDO 5(C2 H6 O2) FORMUL 10 CL 2(CL 1-) FORMUL 12 HOH *565(H2 O) HELIX 1 1 PRO A 40 LYS A 42 5 3 HELIX 2 2 ALA A 43 GLY A 53 1 11 HELIX 3 3 ARG A 62 ARG A 75 1 14 HELIX 4 4 GLY A 79 ASN A 102 1 24 HELIX 5 5 PRO A 104 LEU A 109 5 6 HELIX 6 6 ASP A 128 GLY A 144 1 17 HELIX 7 7 ARG A 161 VAL A 180 1 20 HELIX 8 8 GLU A 196 ALA A 208 1 13 HELIX 9 9 PRO A 209 ASP A 211 5 3 HELIX 10 10 ILE A 224 GLN A 232 1 9 HELIX 11 11 ASN A 246 VAL A 256 1 11 HELIX 12 12 GLY A 271 TYR A 285 1 15 HELIX 13 13 GLY A 296 THR A 310 1 15 HELIX 14 14 ASP A 368 GLU A 375 1 8 SHEET 1 A 3 ILE A 3 ASP A 13 0 SHEET 2 A 3 ARG A 16 THR A 25 -1 O ARG A 16 N ASP A 13 SHEET 3 A 3 THR A 30 GLU A 34 -1 O GLY A 33 N VAL A 21 SHEET 1 B 8 GLY A 288 VAL A 289 0 SHEET 2 B 8 LEU A 261 ILE A 262 1 N ILE A 262 O GLY A 288 SHEET 3 B 8 LEU A 238 THR A 240 1 N THR A 240 O LEU A 261 SHEET 4 B 8 TYR A 215 GLU A 216 1 N TYR A 215 O ALA A 239 SHEET 5 B 8 GLU A 185 ASP A 189 1 N PHE A 188 O GLU A 216 SHEET 6 B 8 ALA A 147 LEU A 150 1 N PHE A 148 O ALA A 187 SHEET 7 B 8 ARG A 116 GLY A 122 1 N ALA A 121 O ALA A 147 SHEET 8 B 8 LEU A 316 TYR A 318 1 O LEU A 316 N LYS A 118 SHEET 1 C 8 GLY A 288 VAL A 289 0 SHEET 2 C 8 LEU A 261 ILE A 262 1 N ILE A 262 O GLY A 288 SHEET 3 C 8 LEU A 238 THR A 240 1 N THR A 240 O LEU A 261 SHEET 4 C 8 TYR A 215 GLU A 216 1 N TYR A 215 O ALA A 239 SHEET 5 C 8 GLU A 185 ASP A 189 1 N PHE A 188 O GLU A 216 SHEET 6 C 8 ALA A 147 LEU A 150 1 N PHE A 148 O ALA A 187 SHEET 7 C 8 ARG A 116 GLY A 122 1 N ALA A 121 O ALA A 147 SHEET 8 C 8 TYR A 353 GLU A 355 -1 O LEU A 354 N VAL A 117 SHEET 1 D 2 LYS A 322 GLN A 324 0 SHEET 2 D 2 GLN A 337 GLU A 339 -1 O GLY A 338 N GLY A 323 SITE 1 AC1 8 ARG A 16 TYR A 36 ARG A 75 PHE A 76 SITE 2 AC1 8 ARG A 382 HOH A 576 HOH A 781 HOH A1025 SITE 1 AC2 5 VAL A 155 ASP A 156 HIS A 160 HOH A 856 SITE 2 AC2 5 HOH A 993 SITE 1 AC3 8 HIS A 160 ARG A 161 ASN A 164 ASP A 183 SITE 2 AC3 8 HOH A 850 HOH A 966 HOH A1026 HOH A1055 SITE 1 AC4 6 ARG A 62 ASP A 115 HOH A 520 HOH A 609 SITE 2 AC4 6 HOH A 945 HOH A1001 SITE 1 AC5 8 LEU A 51 GLN A 73 PRO A 78 GLY A 82 SITE 2 AC5 8 HOH A 620 HOH A 723 HOH A 751 HOH A 815 SITE 1 AC6 5 GLY A 122 ARG A 319 LEU A 320 HOH A 623 SITE 2 AC6 5 HOH A 645 SITE 1 AC7 7 ILE A 194 PHE A 195 GLU A 196 EDO A 408 SITE 2 AC7 7 HOH A 648 HOH A 736 HOH A 772 SITE 1 AC8 8 TRP A 162 VAL A 237 EDO A 407 HOH A 629 SITE 2 AC8 8 HOH A 659 HOH A 748 HOH A 772 HOH A 949 SITE 1 AC9 3 ASN A 140 ARG A 181 HOH A 693 SITE 1 BC1 3 ARG A 138 TRP A 143 HOH A 889 CRYST1 124.044 124.044 114.640 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008062 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008062 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008723 0.00000