data_4JNU # _entry.id 4JNU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4JNU pdb_00004jnu 10.2210/pdb4jnu/pdb RCSB RCSB078280 ? ? WWPDB D_1000078280 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-09-17 2 'Structure model' 1 1 2015-09-02 3 'Structure model' 1 2 2016-02-03 4 'Structure model' 1 3 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' # _database_PDB_caveat.id 1 _database_PDB_caveat.text 'RESIDUES A LEU 489 AND A VAL 490 (CONFORMATION B) ARE NOT PROPERLY LINKED.' # _pdbx_database_status.entry_id 4JNU _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-03-15 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4JNV . unspecified PDB 4JO7 . unspecified PDB 4JO9 . unspecified PDB 4JQ5 . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Stuwe, T.' 1 'Bley, C.J.' 2 'Mayo, D.J.' 3 'Hoelz, A.' 4 # _citation.id primary _citation.title 'Architecture of the fungal nuclear pore inner ring complex.' _citation.journal_abbrev Science _citation.journal_volume 350 _citation.page_first 56 _citation.page_last 64 _citation.year 2015 _citation.journal_id_ASTM SCIEAS _citation.country US _citation.journal_id_ISSN 0036-8075 _citation.journal_id_CSD 0038 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 26316600 _citation.pdbx_database_id_DOI 10.1126/science.aac9176 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Stuwe, T.' 1 ? primary 'Bley, C.J.' 2 ? primary 'Thierbach, K.' 3 ? primary 'Petrovic, S.' 4 ? primary 'Schilbach, S.' 5 ? primary 'Mayo, D.J.' 6 ? primary 'Perriches, T.' 7 ? primary 'Rundlet, E.J.' 8 ? primary 'Jeon, Y.E.' 9 ? primary 'Collins, L.N.' 10 ? primary 'Huber, F.M.' 11 ? primary 'Lin, D.H.' 12 ? primary 'Paduch, M.' 13 ? primary 'Koide, A.' 14 ? primary 'Lu, V.' 15 ? primary 'Fischer, J.' 16 ? primary 'Hurt, E.' 17 ? primary 'Koide, S.' 18 ? primary 'Kossiakoff, A.A.' 19 ? primary 'Hoelz, A.' 20 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Nucleoporin p54' 4729.410 4 ? ? 'UNP residues 453-491' ? 2 water nat water 18.015 131 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Nup54, 54 kDa nucleoporin' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code SYYIDADLLREIKQHLKQQQEGLSHLISIIKDDLEDIKLV _entity_poly.pdbx_seq_one_letter_code_can SYYIDADLLREIKQHLKQQQEGLSHLISIIKDDLEDIKLV _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 TYR n 1 3 TYR n 1 4 ILE n 1 5 ASP n 1 6 ALA n 1 7 ASP n 1 8 LEU n 1 9 LEU n 1 10 ARG n 1 11 GLU n 1 12 ILE n 1 13 LYS n 1 14 GLN n 1 15 HIS n 1 16 LEU n 1 17 LYS n 1 18 GLN n 1 19 GLN n 1 20 GLN n 1 21 GLU n 1 22 GLY n 1 23 LEU n 1 24 SER n 1 25 HIS n 1 26 LEU n 1 27 ILE n 1 28 SER n 1 29 ILE n 1 30 ILE n 1 31 LYS n 1 32 ASP n 1 33 ASP n 1 34 LEU n 1 35 GLU n 1 36 ASP n 1 37 ILE n 1 38 LYS n 1 39 LEU n 1 40 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene NUP54 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 451 451 SER SER A . n A 1 2 TYR 2 452 452 TYR TYR A . n A 1 3 TYR 3 453 453 TYR TYR A . n A 1 4 ILE 4 454 454 ILE ILE A . n A 1 5 ASP 5 455 455 ASP ASP A . n A 1 6 ALA 6 456 456 ALA ALA A . n A 1 7 ASP 7 457 457 ASP ASP A . n A 1 8 LEU 8 458 458 LEU LEU A . n A 1 9 LEU 9 459 459 LEU LEU A . n A 1 10 ARG 10 460 460 ARG ARG A . n A 1 11 GLU 11 461 461 GLU GLU A . n A 1 12 ILE 12 462 462 ILE ILE A . n A 1 13 LYS 13 463 463 LYS LYS A . n A 1 14 GLN 14 464 464 GLN GLN A . n A 1 15 HIS 15 465 465 HIS HIS A . n A 1 16 LEU 16 466 466 LEU LEU A . n A 1 17 LYS 17 467 467 LYS LYS A . n A 1 18 GLN 18 468 468 GLN GLN A . n A 1 19 GLN 19 469 469 GLN GLN A . n A 1 20 GLN 20 470 470 GLN GLN A . n A 1 21 GLU 21 471 471 GLU GLU A . n A 1 22 GLY 22 472 472 GLY GLY A . n A 1 23 LEU 23 473 473 LEU LEU A . n A 1 24 SER 24 474 474 SER SER A . n A 1 25 HIS 25 475 475 HIS HIS A . n A 1 26 LEU 26 476 476 LEU LEU A . n A 1 27 ILE 27 477 477 ILE ILE A . n A 1 28 SER 28 478 478 SER SER A . n A 1 29 ILE 29 479 479 ILE ILE A . n A 1 30 ILE 30 480 480 ILE ILE A . n A 1 31 LYS 31 481 481 LYS LYS A . n A 1 32 ASP 32 482 482 ASP ASP A . n A 1 33 ASP 33 483 483 ASP ASP A . n A 1 34 LEU 34 484 484 LEU LEU A . n A 1 35 GLU 35 485 485 GLU GLU A . n A 1 36 ASP 36 486 486 ASP ASP A . n A 1 37 ILE 37 487 487 ILE ILE A . n A 1 38 LYS 38 488 488 LYS LYS A . n A 1 39 LEU 39 489 489 LEU LEU A . n A 1 40 VAL 40 490 490 VAL VAL A . n B 1 1 SER 1 452 452 SER SER B . n B 1 2 TYR 2 453 453 TYR TYR B . n B 1 3 TYR 3 454 454 TYR TYR B . n B 1 4 ILE 4 455 455 ILE ILE B . n B 1 5 ASP 5 456 456 ASP ASP B . n B 1 6 ALA 6 457 457 ALA ALA B . n B 1 7 ASP 7 458 458 ASP ASP B . n B 1 8 LEU 8 459 459 LEU LEU B . n B 1 9 LEU 9 460 460 LEU LEU B . n B 1 10 ARG 10 461 461 ARG ARG B . n B 1 11 GLU 11 462 462 GLU GLU B . n B 1 12 ILE 12 463 463 ILE ILE B . n B 1 13 LYS 13 464 464 LYS LYS B . n B 1 14 GLN 14 465 465 GLN GLN B . n B 1 15 HIS 15 466 466 HIS HIS B . n B 1 16 LEU 16 467 467 LEU LEU B . n B 1 17 LYS 17 468 468 LYS LYS B . n B 1 18 GLN 18 469 469 GLN GLN B . n B 1 19 GLN 19 470 470 GLN GLN B . n B 1 20 GLN 20 471 471 GLN GLN B . n B 1 21 GLU 21 472 472 GLU GLU B . n B 1 22 GLY 22 473 473 GLY GLY B . n B 1 23 LEU 23 474 474 LEU LEU B . n B 1 24 SER 24 475 475 SER SER B . n B 1 25 HIS 25 476 476 HIS HIS B . n B 1 26 LEU 26 477 477 LEU LEU B . n B 1 27 ILE 27 478 478 ILE ILE B . n B 1 28 SER 28 479 479 SER SER B . n B 1 29 ILE 29 480 480 ILE ILE B . n B 1 30 ILE 30 481 481 ILE ILE B . n B 1 31 LYS 31 482 482 LYS LYS B . n B 1 32 ASP 32 483 483 ASP ASP B . n B 1 33 ASP 33 484 484 ASP ASP B . n B 1 34 LEU 34 485 485 LEU LEU B . n B 1 35 GLU 35 486 486 GLU GLU B . n B 1 36 ASP 36 487 487 ASP ASP B . n B 1 37 ILE 37 488 488 ILE ILE B . n B 1 38 LYS 38 489 489 LYS LYS B . n B 1 39 LEU 39 490 490 LEU LEU B . n B 1 40 VAL 40 491 491 VAL VAL B . n C 1 1 SER 1 453 453 SER SER C . n C 1 2 TYR 2 454 454 TYR TYR C . n C 1 3 TYR 3 455 455 TYR TYR C . n C 1 4 ILE 4 456 456 ILE ILE C . n C 1 5 ASP 5 457 457 ASP ASP C . n C 1 6 ALA 6 458 458 ALA ALA C . n C 1 7 ASP 7 459 459 ASP ASP C . n C 1 8 LEU 8 460 460 LEU LEU C . n C 1 9 LEU 9 461 461 LEU LEU C . n C 1 10 ARG 10 462 462 ARG ARG C . n C 1 11 GLU 11 463 463 GLU GLU C . n C 1 12 ILE 12 464 464 ILE ILE C . n C 1 13 LYS 13 465 465 LYS LYS C . n C 1 14 GLN 14 466 466 GLN GLN C . n C 1 15 HIS 15 467 467 HIS HIS C . n C 1 16 LEU 16 468 468 LEU LEU C . n C 1 17 LYS 17 469 469 LYS LYS C . n C 1 18 GLN 18 470 470 GLN GLN C . n C 1 19 GLN 19 471 471 GLN GLN C . n C 1 20 GLN 20 472 472 GLN GLN C . n C 1 21 GLU 21 473 473 GLU GLU C . n C 1 22 GLY 22 474 474 GLY GLY C . n C 1 23 LEU 23 475 475 LEU LEU C . n C 1 24 SER 24 476 476 SER SER C . n C 1 25 HIS 25 477 477 HIS HIS C . n C 1 26 LEU 26 478 478 LEU LEU C . n C 1 27 ILE 27 479 479 ILE ILE C . n C 1 28 SER 28 480 480 SER SER C . n C 1 29 ILE 29 481 481 ILE ILE C . n C 1 30 ILE 30 482 482 ILE ILE C . n C 1 31 LYS 31 483 483 LYS LYS C . n C 1 32 ASP 32 484 484 ASP ASP C . n C 1 33 ASP 33 485 485 ASP ASP C . n C 1 34 LEU 34 486 486 LEU LEU C . n C 1 35 GLU 35 487 487 GLU GLU C . n C 1 36 ASP 36 488 488 ASP ASP C . n C 1 37 ILE 37 489 489 ILE ILE C . n C 1 38 LYS 38 490 490 LYS LYS C . n C 1 39 LEU 39 491 491 LEU LEU C . n C 1 40 VAL 40 492 492 VAL VAL C . n D 1 1 SER 1 452 452 SER SER D . n D 1 2 TYR 2 453 453 TYR TYR D . n D 1 3 TYR 3 454 454 TYR TYR D . n D 1 4 ILE 4 455 455 ILE ILE D . n D 1 5 ASP 5 456 456 ASP ASP D . n D 1 6 ALA 6 457 457 ALA ALA D . n D 1 7 ASP 7 458 458 ASP ASP D . n D 1 8 LEU 8 459 459 LEU LEU D . n D 1 9 LEU 9 460 460 LEU LEU D . n D 1 10 ARG 10 461 461 ARG ARG D . n D 1 11 GLU 11 462 462 GLU GLU D . n D 1 12 ILE 12 463 463 ILE ILE D . n D 1 13 LYS 13 464 464 LYS LYS D . n D 1 14 GLN 14 465 465 GLN GLN D . n D 1 15 HIS 15 466 466 HIS HIS D . n D 1 16 LEU 16 467 467 LEU LEU D . n D 1 17 LYS 17 468 468 LYS LYS D . n D 1 18 GLN 18 469 469 GLN GLN D . n D 1 19 GLN 19 470 470 GLN GLN D . n D 1 20 GLN 20 471 471 GLN GLN D . n D 1 21 GLU 21 472 472 GLU GLU D . n D 1 22 GLY 22 473 473 GLY GLY D . n D 1 23 LEU 23 474 474 LEU LEU D . n D 1 24 SER 24 475 475 SER SER D . n D 1 25 HIS 25 476 476 HIS HIS D . n D 1 26 LEU 26 477 477 LEU LEU D . n D 1 27 ILE 27 478 478 ILE ILE D . n D 1 28 SER 28 479 479 SER SER D . n D 1 29 ILE 29 480 480 ILE ILE D . n D 1 30 ILE 30 481 481 ILE ILE D . n D 1 31 LYS 31 482 482 LYS LYS D . n D 1 32 ASP 32 483 483 ASP ASP D . n D 1 33 ASP 33 484 484 ASP ASP D . n D 1 34 LEU 34 485 485 LEU LEU D . n D 1 35 GLU 35 486 486 GLU GLU D . n D 1 36 ASP 36 487 487 ASP ASP D . n D 1 37 ILE 37 488 488 ILE ILE D . n D 1 38 LYS 38 489 489 LYS LYS D . n D 1 39 LEU 39 490 490 LEU LEU D . n D 1 40 VAL 40 491 491 VAL VAL D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HOH 1 501 1 HOH HOH A . E 2 HOH 2 502 2 HOH HOH A . E 2 HOH 3 503 4 HOH HOH A . E 2 HOH 4 504 17 HOH HOH A . E 2 HOH 5 505 18 HOH HOH A . E 2 HOH 6 506 19 HOH HOH A . E 2 HOH 7 507 22 HOH HOH A . E 2 HOH 8 508 29 HOH HOH A . E 2 HOH 9 509 33 HOH HOH A . E 2 HOH 10 510 38 HOH HOH A . E 2 HOH 11 511 41 HOH HOH A . E 2 HOH 12 512 45 HOH HOH A . E 2 HOH 13 513 46 HOH HOH A . E 2 HOH 14 514 50 HOH HOH A . E 2 HOH 15 515 52 HOH HOH A . E 2 HOH 16 516 53 HOH HOH A . E 2 HOH 17 517 56 HOH HOH A . E 2 HOH 18 518 60 HOH HOH A . E 2 HOH 19 519 62 HOH HOH A . E 2 HOH 20 520 65 HOH HOH A . E 2 HOH 21 521 69 HOH HOH A . E 2 HOH 22 522 77 HOH HOH A . E 2 HOH 23 523 82 HOH HOH A . E 2 HOH 24 524 87 HOH HOH A . E 2 HOH 25 525 88 HOH HOH A . E 2 HOH 26 526 97 HOH HOH A . E 2 HOH 27 527 98 HOH HOH A . E 2 HOH 28 528 99 HOH HOH A . E 2 HOH 29 529 104 HOH HOH A . E 2 HOH 30 530 106 HOH HOH A . E 2 HOH 31 531 107 HOH HOH A . E 2 HOH 32 532 117 HOH HOH A . E 2 HOH 33 533 118 HOH HOH A . E 2 HOH 34 534 119 HOH HOH A . E 2 HOH 35 535 122 HOH HOH A . E 2 HOH 36 536 123 HOH HOH A . E 2 HOH 37 537 124 HOH HOH A . E 2 HOH 38 538 129 HOH HOH A . E 2 HOH 39 539 131 HOH HOH A . E 2 HOH 40 540 86 HOH HOH A . F 2 HOH 1 501 3 HOH HOH B . F 2 HOH 2 502 5 HOH HOH B . F 2 HOH 3 503 6 HOH HOH B . F 2 HOH 4 504 7 HOH HOH B . F 2 HOH 5 505 15 HOH HOH B . F 2 HOH 6 506 16 HOH HOH B . F 2 HOH 7 507 23 HOH HOH B . F 2 HOH 8 508 27 HOH HOH B . F 2 HOH 9 509 32 HOH HOH B . F 2 HOH 10 510 40 HOH HOH B . F 2 HOH 11 511 42 HOH HOH B . F 2 HOH 12 512 44 HOH HOH B . F 2 HOH 13 513 47 HOH HOH B . F 2 HOH 14 514 58 HOH HOH B . F 2 HOH 15 515 63 HOH HOH B . F 2 HOH 16 516 66 HOH HOH B . F 2 HOH 17 517 76 HOH HOH B . F 2 HOH 18 518 81 HOH HOH B . F 2 HOH 19 519 89 HOH HOH B . F 2 HOH 20 520 90 HOH HOH B . F 2 HOH 21 521 109 HOH HOH B . F 2 HOH 22 522 110 HOH HOH B . F 2 HOH 23 523 116 HOH HOH B . F 2 HOH 24 524 120 HOH HOH B . F 2 HOH 25 525 125 HOH HOH B . F 2 HOH 26 526 128 HOH HOH B . F 2 HOH 27 527 130 HOH HOH B . G 2 HOH 1 501 11 HOH HOH C . G 2 HOH 2 502 12 HOH HOH C . G 2 HOH 3 503 14 HOH HOH C . G 2 HOH 4 504 20 HOH HOH C . G 2 HOH 5 505 21 HOH HOH C . G 2 HOH 6 506 28 HOH HOH C . G 2 HOH 7 507 30 HOH HOH C . G 2 HOH 8 508 34 HOH HOH C . G 2 HOH 9 509 36 HOH HOH C . G 2 HOH 10 510 37 HOH HOH C . G 2 HOH 11 511 39 HOH HOH C . G 2 HOH 12 512 49 HOH HOH C . G 2 HOH 13 513 54 HOH HOH C . G 2 HOH 14 514 59 HOH HOH C . G 2 HOH 15 515 64 HOH HOH C . G 2 HOH 16 516 68 HOH HOH C . G 2 HOH 17 517 73 HOH HOH C . G 2 HOH 18 518 74 HOH HOH C . G 2 HOH 19 519 75 HOH HOH C . G 2 HOH 20 520 78 HOH HOH C . G 2 HOH 21 521 84 HOH HOH C . G 2 HOH 22 522 85 HOH HOH C . G 2 HOH 23 523 91 HOH HOH C . G 2 HOH 24 524 93 HOH HOH C . G 2 HOH 25 525 95 HOH HOH C . G 2 HOH 26 526 96 HOH HOH C . G 2 HOH 27 527 103 HOH HOH C . G 2 HOH 28 528 105 HOH HOH C . G 2 HOH 29 529 108 HOH HOH C . G 2 HOH 30 530 112 HOH HOH C . G 2 HOH 31 531 113 HOH HOH C . G 2 HOH 32 532 127 HOH HOH C . H 2 HOH 1 501 121 HOH HOH D . H 2 HOH 2 502 10 HOH HOH D . H 2 HOH 3 503 13 HOH HOH D . H 2 HOH 4 504 8 HOH HOH D . H 2 HOH 5 505 9 HOH HOH D . H 2 HOH 6 506 24 HOH HOH D . H 2 HOH 7 507 25 HOH HOH D . H 2 HOH 8 508 26 HOH HOH D . H 2 HOH 9 509 31 HOH HOH D . H 2 HOH 10 510 35 HOH HOH D . H 2 HOH 11 511 43 HOH HOH D . H 2 HOH 12 512 48 HOH HOH D . H 2 HOH 13 513 51 HOH HOH D . H 2 HOH 14 514 55 HOH HOH D . H 2 HOH 15 515 57 HOH HOH D . H 2 HOH 16 516 61 HOH HOH D . H 2 HOH 17 517 67 HOH HOH D . H 2 HOH 18 518 70 HOH HOH D . H 2 HOH 19 519 71 HOH HOH D . H 2 HOH 20 520 72 HOH HOH D . H 2 HOH 21 521 79 HOH HOH D . H 2 HOH 22 522 80 HOH HOH D . H 2 HOH 23 523 83 HOH HOH D . H 2 HOH 24 524 92 HOH HOH D . H 2 HOH 25 525 94 HOH HOH D . H 2 HOH 26 526 100 HOH HOH D . H 2 HOH 27 527 101 HOH HOH D . H 2 HOH 28 528 102 HOH HOH D . H 2 HOH 29 529 111 HOH HOH D . H 2 HOH 30 530 114 HOH HOH D . H 2 HOH 31 531 115 HOH HOH D . H 2 HOH 32 532 126 HOH HOH D . # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 PHENIX 1.8_1069 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 4 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 5 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 6 PHENIX 1.8_1069 ? ? ? ? phasing ? ? ? # _cell.length_a 39.909 _cell.length_b 45.126 _cell.length_c 46.384 _cell.angle_alpha 90.000 _cell.angle_beta 113.750 _cell.angle_gamma 90.000 _cell.entry_id 4JNU _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.entry_id 4JNU _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 4 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 4JNU _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.02 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 39.13 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 5.3 _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '0.1 M sodium acetate, pH 5.3, 1.9 M sodium formate, VAPOR DIFFUSION, HANGING DROP, temperature 294K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2012-11-16 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'double crystal Si(111)' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.2.1' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0000 _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.2.1 # _reflns.entry_id 4JNU _reflns.B_iso_Wilson_estimate 17.63 _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 1.445 _reflns.d_resolution_low 20.0 _reflns.number_all ? _reflns.number_obs 26320 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 4JNU _refine.ls_d_res_high 1.445 _refine.ls_d_res_low 19.946 _refine.pdbx_ls_sigma_F 1.350 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 96.62 _refine.ls_number_reflns_obs 26274 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details ? _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1856 _refine.ls_R_factor_R_work 0.1831 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2179 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 7.5700 _refine.ls_number_reflns_R_free 1990 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 27.8702 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.1400 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'AB INITIO PHASING' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8461 _refine.B_iso_max 103.180 _refine.B_iso_min 8.650 _refine.pdbx_overall_phase_error 22.6500 _refine.occupancy_max 1.000 _refine.occupancy_min 0.230 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1328 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 131 _refine_hist.number_atoms_total 1459 _refine_hist.d_res_high 1.445 _refine_hist.d_res_low 19.946 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 1486 0.007 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 2010 1.004 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 234 0.054 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 257 0.004 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 594 15.831 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 1.445 1.4807 14 74.0 1336 . 0.2646 0.2784 . 112 . 1448 . . 'X-RAY DIFFRACTION' 1.4807 1.5207 14 86.0 1522 . 0.2203 0.2661 . 127 . 1649 . . 'X-RAY DIFFRACTION' 1.5207 1.5655 14 94.0 1655 . 0.2071 0.2612 . 136 . 1791 . . 'X-RAY DIFFRACTION' 1.5655 1.6160 14 99.0 1773 . 0.2031 0.2237 . 147 . 1920 . . 'X-RAY DIFFRACTION' 1.6160 1.6737 14 100.0 1814 . 0.1925 0.2348 . 140 . 1954 . . 'X-RAY DIFFRACTION' 1.6737 1.7407 14 100.0 1771 . 0.1965 0.2222 . 150 . 1921 . . 'X-RAY DIFFRACTION' 1.7407 1.8199 14 100.0 1784 . 0.1949 0.2137 . 148 . 1932 . . 'X-RAY DIFFRACTION' 1.8199 1.9157 14 100.0 1780 . 0.1908 0.2371 . 145 . 1925 . . 'X-RAY DIFFRACTION' 1.9157 2.0357 14 100.0 1783 . 0.1749 0.2035 . 145 . 1928 . . 'X-RAY DIFFRACTION' 2.0357 2.1926 14 100.0 1808 . 0.1607 0.1879 . 148 . 1956 . . 'X-RAY DIFFRACTION' 2.1926 2.4130 14 100.0 1807 . 0.1562 0.1953 . 144 . 1951 . . 'X-RAY DIFFRACTION' 2.4130 2.7613 14 100.0 1787 . 0.1743 0.2258 . 149 . 1936 . . 'X-RAY DIFFRACTION' 2.7613 3.4760 14 100.0 1807 . 0.1931 0.2218 . 147 . 1954 . . 'X-RAY DIFFRACTION' 3.4760 19.9474 14 100.0 1857 . 0.1825 0.2171 . 152 . 2009 . . 'X-RAY DIFFRACTION' # _struct.entry_id 4JNU _struct.title 'Crystal structure of the human Nup57CCS3* coiled-coil segment, space group P21' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4JNU _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' _struct_keywords.text 'nucleocytoplasmic transport, TRANSPORT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NUP54_HUMAN _struct_ref.pdbx_db_accession Q7Z3B4 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code YYIDADLLREIKQHLKQQQEGLSHLISIIKDDLEDIKLV _struct_ref.pdbx_align_begin 453 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4JNU A 2 ? 40 ? Q7Z3B4 453 ? 491 ? 452 490 2 1 4JNU B 2 ? 40 ? Q7Z3B4 453 ? 491 ? 453 491 3 1 4JNU C 2 ? 40 ? Q7Z3B4 453 ? 491 ? 454 492 4 1 4JNU D 2 ? 40 ? Q7Z3B4 453 ? 491 ? 453 491 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4JNU SER A 1 ? UNP Q7Z3B4 ? ? 'expression tag' 451 1 2 4JNU SER B 1 ? UNP Q7Z3B4 ? ? 'expression tag' 452 2 3 4JNU SER C 1 ? UNP Q7Z3B4 ? ? 'expression tag' 453 3 4 4JNU SER D 1 ? UNP Q7Z3B4 ? ? 'expression tag' 452 4 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7580 ? 1 MORE -77 ? 1 'SSA (A^2)' 9780 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 6 ? ILE A 37 ? ALA A 456 ILE A 487 1 ? 32 HELX_P HELX_P2 2 LYS A 38 ? VAL A 40 ? LYS A 488 VAL A 490 5 ? 3 HELX_P HELX_P3 3 ASP B 7 ? ILE B 37 ? ASP B 458 ILE B 488 1 ? 31 HELX_P HELX_P4 4 ASP C 5 ? LEU C 39 ? ASP C 457 LEU C 491 1 ? 35 HELX_P HELX_P5 5 ASP D 5 ? GLU D 35 ? ASP D 456 GLU D 486 1 ? 31 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 3 ? ASP A 5 ? TYR A 453 ASP A 455 A 2 TYR B 3 ? ASP B 5 ? TYR B 454 ASP B 456 B 1 TYR C 2 ? TYR C 3 ? TYR C 454 TYR C 455 B 2 TYR D 2 ? TYR D 3 ? TYR D 453 TYR D 454 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 4 ? N ILE A 454 O ILE B 4 ? O ILE B 455 B 1 2 N TYR C 3 ? N TYR C 455 O TYR D 2 ? O TYR D 453 # _pdbx_validate_polymer_linkage.id 1 _pdbx_validate_polymer_linkage.PDB_model_num 1 _pdbx_validate_polymer_linkage.auth_atom_id_1 C _pdbx_validate_polymer_linkage.auth_asym_id_1 A _pdbx_validate_polymer_linkage.auth_comp_id_1 LEU _pdbx_validate_polymer_linkage.auth_seq_id_1 489 _pdbx_validate_polymer_linkage.PDB_ins_code_1 ? _pdbx_validate_polymer_linkage.label_alt_id_1 ? _pdbx_validate_polymer_linkage.auth_atom_id_2 N _pdbx_validate_polymer_linkage.auth_asym_id_2 A _pdbx_validate_polymer_linkage.auth_comp_id_2 VAL _pdbx_validate_polymer_linkage.auth_seq_id_2 490 _pdbx_validate_polymer_linkage.PDB_ins_code_2 ? _pdbx_validate_polymer_linkage.label_alt_id_2 B _pdbx_validate_polymer_linkage.dist 2.52 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASP N N N N 41 ASP CA C N S 42 ASP C C N N 43 ASP O O N N 44 ASP CB C N N 45 ASP CG C N N 46 ASP OD1 O N N 47 ASP OD2 O N N 48 ASP OXT O N N 49 ASP H H N N 50 ASP H2 H N N 51 ASP HA H N N 52 ASP HB2 H N N 53 ASP HB3 H N N 54 ASP HD2 H N N 55 ASP HXT H N N 56 GLN N N N N 57 GLN CA C N S 58 GLN C C N N 59 GLN O O N N 60 GLN CB C N N 61 GLN CG C N N 62 GLN CD C N N 63 GLN OE1 O N N 64 GLN NE2 N N N 65 GLN OXT O N N 66 GLN H H N N 67 GLN H2 H N N 68 GLN HA H N N 69 GLN HB2 H N N 70 GLN HB3 H N N 71 GLN HG2 H N N 72 GLN HG3 H N N 73 GLN HE21 H N N 74 GLN HE22 H N N 75 GLN HXT H N N 76 GLU N N N N 77 GLU CA C N S 78 GLU C C N N 79 GLU O O N N 80 GLU CB C N N 81 GLU CG C N N 82 GLU CD C N N 83 GLU OE1 O N N 84 GLU OE2 O N N 85 GLU OXT O N N 86 GLU H H N N 87 GLU H2 H N N 88 GLU HA H N N 89 GLU HB2 H N N 90 GLU HB3 H N N 91 GLU HG2 H N N 92 GLU HG3 H N N 93 GLU HE2 H N N 94 GLU HXT H N N 95 GLY N N N N 96 GLY CA C N N 97 GLY C C N N 98 GLY O O N N 99 GLY OXT O N N 100 GLY H H N N 101 GLY H2 H N N 102 GLY HA2 H N N 103 GLY HA3 H N N 104 GLY HXT H N N 105 HIS N N N N 106 HIS CA C N S 107 HIS C C N N 108 HIS O O N N 109 HIS CB C N N 110 HIS CG C Y N 111 HIS ND1 N Y N 112 HIS CD2 C Y N 113 HIS CE1 C Y N 114 HIS NE2 N Y N 115 HIS OXT O N N 116 HIS H H N N 117 HIS H2 H N N 118 HIS HA H N N 119 HIS HB2 H N N 120 HIS HB3 H N N 121 HIS HD1 H N N 122 HIS HD2 H N N 123 HIS HE1 H N N 124 HIS HE2 H N N 125 HIS HXT H N N 126 HOH O O N N 127 HOH H1 H N N 128 HOH H2 H N N 129 ILE N N N N 130 ILE CA C N S 131 ILE C C N N 132 ILE O O N N 133 ILE CB C N S 134 ILE CG1 C N N 135 ILE CG2 C N N 136 ILE CD1 C N N 137 ILE OXT O N N 138 ILE H H N N 139 ILE H2 H N N 140 ILE HA H N N 141 ILE HB H N N 142 ILE HG12 H N N 143 ILE HG13 H N N 144 ILE HG21 H N N 145 ILE HG22 H N N 146 ILE HG23 H N N 147 ILE HD11 H N N 148 ILE HD12 H N N 149 ILE HD13 H N N 150 ILE HXT H N N 151 LEU N N N N 152 LEU CA C N S 153 LEU C C N N 154 LEU O O N N 155 LEU CB C N N 156 LEU CG C N N 157 LEU CD1 C N N 158 LEU CD2 C N N 159 LEU OXT O N N 160 LEU H H N N 161 LEU H2 H N N 162 LEU HA H N N 163 LEU HB2 H N N 164 LEU HB3 H N N 165 LEU HG H N N 166 LEU HD11 H N N 167 LEU HD12 H N N 168 LEU HD13 H N N 169 LEU HD21 H N N 170 LEU HD22 H N N 171 LEU HD23 H N N 172 LEU HXT H N N 173 LYS N N N N 174 LYS CA C N S 175 LYS C C N N 176 LYS O O N N 177 LYS CB C N N 178 LYS CG C N N 179 LYS CD C N N 180 LYS CE C N N 181 LYS NZ N N N 182 LYS OXT O N N 183 LYS H H N N 184 LYS H2 H N N 185 LYS HA H N N 186 LYS HB2 H N N 187 LYS HB3 H N N 188 LYS HG2 H N N 189 LYS HG3 H N N 190 LYS HD2 H N N 191 LYS HD3 H N N 192 LYS HE2 H N N 193 LYS HE3 H N N 194 LYS HZ1 H N N 195 LYS HZ2 H N N 196 LYS HZ3 H N N 197 LYS HXT H N N 198 SER N N N N 199 SER CA C N S 200 SER C C N N 201 SER O O N N 202 SER CB C N N 203 SER OG O N N 204 SER OXT O N N 205 SER H H N N 206 SER H2 H N N 207 SER HA H N N 208 SER HB2 H N N 209 SER HB3 H N N 210 SER HG H N N 211 SER HXT H N N 212 TYR N N N N 213 TYR CA C N S 214 TYR C C N N 215 TYR O O N N 216 TYR CB C N N 217 TYR CG C Y N 218 TYR CD1 C Y N 219 TYR CD2 C Y N 220 TYR CE1 C Y N 221 TYR CE2 C Y N 222 TYR CZ C Y N 223 TYR OH O N N 224 TYR OXT O N N 225 TYR H H N N 226 TYR H2 H N N 227 TYR HA H N N 228 TYR HB2 H N N 229 TYR HB3 H N N 230 TYR HD1 H N N 231 TYR HD2 H N N 232 TYR HE1 H N N 233 TYR HE2 H N N 234 TYR HH H N N 235 TYR HXT H N N 236 VAL N N N N 237 VAL CA C N S 238 VAL C C N N 239 VAL O O N N 240 VAL CB C N N 241 VAL CG1 C N N 242 VAL CG2 C N N 243 VAL OXT O N N 244 VAL H H N N 245 VAL H2 H N N 246 VAL HA H N N 247 VAL HB H N N 248 VAL HG11 H N N 249 VAL HG12 H N N 250 VAL HG13 H N N 251 VAL HG21 H N N 252 VAL HG22 H N N 253 VAL HG23 H N N 254 VAL HXT H N N 255 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASP N CA sing N N 39 ASP N H sing N N 40 ASP N H2 sing N N 41 ASP CA C sing N N 42 ASP CA CB sing N N 43 ASP CA HA sing N N 44 ASP C O doub N N 45 ASP C OXT sing N N 46 ASP CB CG sing N N 47 ASP CB HB2 sing N N 48 ASP CB HB3 sing N N 49 ASP CG OD1 doub N N 50 ASP CG OD2 sing N N 51 ASP OD2 HD2 sing N N 52 ASP OXT HXT sing N N 53 GLN N CA sing N N 54 GLN N H sing N N 55 GLN N H2 sing N N 56 GLN CA C sing N N 57 GLN CA CB sing N N 58 GLN CA HA sing N N 59 GLN C O doub N N 60 GLN C OXT sing N N 61 GLN CB CG sing N N 62 GLN CB HB2 sing N N 63 GLN CB HB3 sing N N 64 GLN CG CD sing N N 65 GLN CG HG2 sing N N 66 GLN CG HG3 sing N N 67 GLN CD OE1 doub N N 68 GLN CD NE2 sing N N 69 GLN NE2 HE21 sing N N 70 GLN NE2 HE22 sing N N 71 GLN OXT HXT sing N N 72 GLU N CA sing N N 73 GLU N H sing N N 74 GLU N H2 sing N N 75 GLU CA C sing N N 76 GLU CA CB sing N N 77 GLU CA HA sing N N 78 GLU C O doub N N 79 GLU C OXT sing N N 80 GLU CB CG sing N N 81 GLU CB HB2 sing N N 82 GLU CB HB3 sing N N 83 GLU CG CD sing N N 84 GLU CG HG2 sing N N 85 GLU CG HG3 sing N N 86 GLU CD OE1 doub N N 87 GLU CD OE2 sing N N 88 GLU OE2 HE2 sing N N 89 GLU OXT HXT sing N N 90 GLY N CA sing N N 91 GLY N H sing N N 92 GLY N H2 sing N N 93 GLY CA C sing N N 94 GLY CA HA2 sing N N 95 GLY CA HA3 sing N N 96 GLY C O doub N N 97 GLY C OXT sing N N 98 GLY OXT HXT sing N N 99 HIS N CA sing N N 100 HIS N H sing N N 101 HIS N H2 sing N N 102 HIS CA C sing N N 103 HIS CA CB sing N N 104 HIS CA HA sing N N 105 HIS C O doub N N 106 HIS C OXT sing N N 107 HIS CB CG sing N N 108 HIS CB HB2 sing N N 109 HIS CB HB3 sing N N 110 HIS CG ND1 sing Y N 111 HIS CG CD2 doub Y N 112 HIS ND1 CE1 doub Y N 113 HIS ND1 HD1 sing N N 114 HIS CD2 NE2 sing Y N 115 HIS CD2 HD2 sing N N 116 HIS CE1 NE2 sing Y N 117 HIS CE1 HE1 sing N N 118 HIS NE2 HE2 sing N N 119 HIS OXT HXT sing N N 120 HOH O H1 sing N N 121 HOH O H2 sing N N 122 ILE N CA sing N N 123 ILE N H sing N N 124 ILE N H2 sing N N 125 ILE CA C sing N N 126 ILE CA CB sing N N 127 ILE CA HA sing N N 128 ILE C O doub N N 129 ILE C OXT sing N N 130 ILE CB CG1 sing N N 131 ILE CB CG2 sing N N 132 ILE CB HB sing N N 133 ILE CG1 CD1 sing N N 134 ILE CG1 HG12 sing N N 135 ILE CG1 HG13 sing N N 136 ILE CG2 HG21 sing N N 137 ILE CG2 HG22 sing N N 138 ILE CG2 HG23 sing N N 139 ILE CD1 HD11 sing N N 140 ILE CD1 HD12 sing N N 141 ILE CD1 HD13 sing N N 142 ILE OXT HXT sing N N 143 LEU N CA sing N N 144 LEU N H sing N N 145 LEU N H2 sing N N 146 LEU CA C sing N N 147 LEU CA CB sing N N 148 LEU CA HA sing N N 149 LEU C O doub N N 150 LEU C OXT sing N N 151 LEU CB CG sing N N 152 LEU CB HB2 sing N N 153 LEU CB HB3 sing N N 154 LEU CG CD1 sing N N 155 LEU CG CD2 sing N N 156 LEU CG HG sing N N 157 LEU CD1 HD11 sing N N 158 LEU CD1 HD12 sing N N 159 LEU CD1 HD13 sing N N 160 LEU CD2 HD21 sing N N 161 LEU CD2 HD22 sing N N 162 LEU CD2 HD23 sing N N 163 LEU OXT HXT sing N N 164 LYS N CA sing N N 165 LYS N H sing N N 166 LYS N H2 sing N N 167 LYS CA C sing N N 168 LYS CA CB sing N N 169 LYS CA HA sing N N 170 LYS C O doub N N 171 LYS C OXT sing N N 172 LYS CB CG sing N N 173 LYS CB HB2 sing N N 174 LYS CB HB3 sing N N 175 LYS CG CD sing N N 176 LYS CG HG2 sing N N 177 LYS CG HG3 sing N N 178 LYS CD CE sing N N 179 LYS CD HD2 sing N N 180 LYS CD HD3 sing N N 181 LYS CE NZ sing N N 182 LYS CE HE2 sing N N 183 LYS CE HE3 sing N N 184 LYS NZ HZ1 sing N N 185 LYS NZ HZ2 sing N N 186 LYS NZ HZ3 sing N N 187 LYS OXT HXT sing N N 188 SER N CA sing N N 189 SER N H sing N N 190 SER N H2 sing N N 191 SER CA C sing N N 192 SER CA CB sing N N 193 SER CA HA sing N N 194 SER C O doub N N 195 SER C OXT sing N N 196 SER CB OG sing N N 197 SER CB HB2 sing N N 198 SER CB HB3 sing N N 199 SER OG HG sing N N 200 SER OXT HXT sing N N 201 TYR N CA sing N N 202 TYR N H sing N N 203 TYR N H2 sing N N 204 TYR CA C sing N N 205 TYR CA CB sing N N 206 TYR CA HA sing N N 207 TYR C O doub N N 208 TYR C OXT sing N N 209 TYR CB CG sing N N 210 TYR CB HB2 sing N N 211 TYR CB HB3 sing N N 212 TYR CG CD1 doub Y N 213 TYR CG CD2 sing Y N 214 TYR CD1 CE1 sing Y N 215 TYR CD1 HD1 sing N N 216 TYR CD2 CE2 doub Y N 217 TYR CD2 HD2 sing N N 218 TYR CE1 CZ doub Y N 219 TYR CE1 HE1 sing N N 220 TYR CE2 CZ sing Y N 221 TYR CE2 HE2 sing N N 222 TYR CZ OH sing N N 223 TYR OH HH sing N N 224 TYR OXT HXT sing N N 225 VAL N CA sing N N 226 VAL N H sing N N 227 VAL N H2 sing N N 228 VAL CA C sing N N 229 VAL CA CB sing N N 230 VAL CA HA sing N N 231 VAL C O doub N N 232 VAL C OXT sing N N 233 VAL CB CG1 sing N N 234 VAL CB CG2 sing N N 235 VAL CB HB sing N N 236 VAL CG1 HG11 sing N N 237 VAL CG1 HG12 sing N N 238 VAL CG1 HG13 sing N N 239 VAL CG2 HG21 sing N N 240 VAL CG2 HG22 sing N N 241 VAL CG2 HG23 sing N N 242 VAL OXT HXT sing N N 243 # _atom_sites.entry_id 4JNU _atom_sites.fract_transf_matrix[1][1] 0.025057 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.011026 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022160 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023554 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C H N O # loop_