HEADER OXIDOREDUCTASE 16-MAR-13 4JO0 TITLE CRYSTAL STRUCTURE OF CMLA, A DIIRON BETA-HYDROXYLASE FROM STREPTOMYCES TITLE 2 VENEZUELAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CMLA; COMPND 3 CHAIN: A; COMPND 4 EC: 1.14.-.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES VENEZUELAE; SOURCE 3 ORGANISM_TAXID: 54571; SOURCE 4 GENE: CMLA, SVEN_0921; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS NONHEME OXYGENASE, DINUCLEAR IRON CLUSTER, ANTIBIOTIC, BETA- KEYWDS 2 HYDROXYLATION, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.J.KNOOT,T.M.MAKRIS,C.M.WILMOT,J.D.LIPSCOMB REVDAT 4 28-FEB-24 4JO0 1 REMARK SEQADV LINK REVDAT 3 15-NOV-17 4JO0 1 REMARK REVDAT 2 09-OCT-13 4JO0 1 JRNL REVDAT 1 11-SEP-13 4JO0 0 JRNL AUTH T.M.MAKRIS,C.J.KNOOT,C.M.WILMOT,J.D.LIPSCOMB JRNL TITL STRUCTURE OF A DINUCLEAR IRON CLUSTER-CONTAINING JRNL TITL 2 BETA-HYDROXYLASE ACTIVE IN ANTIBIOTIC BIOSYNTHESIS. JRNL REF BIOCHEMISTRY V. 52 6662 2013 JRNL REFN ISSN 0006-2960 JRNL PMID 23980641 JRNL DOI 10.1021/BI400845B REMARK 2 REMARK 2 RESOLUTION. 2.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 54095 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2875 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.17 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3353 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.3800 REMARK 3 BIN FREE R VALUE SET COUNT : 150 REMARK 3 BIN FREE R VALUE : 0.3960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4195 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 152 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.68000 REMARK 3 B22 (A**2) : 0.68000 REMARK 3 B33 (A**2) : -1.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.157 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.149 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.126 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.383 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4398 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4084 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5990 ; 1.777 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9352 ; 1.106 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 536 ; 7.105 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 231 ;31.681 ;22.338 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 689 ;17.242 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 52 ;20.652 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 638 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5052 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1092 ; 0.011 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4JO0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000078286. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57023 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.170 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.43500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, 10% PEG20000, 10% REMARK 280 GLYCEROL, 100 MM POTASSIUM ACETATE, PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.67800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 76.57900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 76.57900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 70.01700 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 76.57900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 76.57900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 23.33900 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 76.57900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 76.57900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 70.01700 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 76.57900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 76.57900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 23.33900 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 46.67800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -46.67800 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 850 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 237 REMARK 465 ALA A 238 REMARK 465 SER A 239 REMARK 465 GLU A 240 REMARK 465 ALA A 241 REMARK 465 PRO A 242 REMARK 465 ALA A 243 REMARK 465 PRO A 244 REMARK 465 ALA A 245 REMARK 465 SER A 246 REMARK 465 SER A 247 REMARK 465 SER A 248 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 357 NH2 ARG A 384 2.16 REMARK 500 O GLY A 428 O HOH A 951 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 438 CB TRP A 438 CG 0.118 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 31 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 163 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 318 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 318 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG A 325 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 347 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 384 NE - CZ - NH1 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG A 384 NE - CZ - NH2 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG A 456 CG - CD - NE ANGL. DEV. = -15.2 DEGREES REMARK 500 ARG A 456 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 36 -63.02 -130.51 REMARK 500 ASP A 47 84.93 -163.16 REMARK 500 ILE A 103 -63.38 -92.16 REMARK 500 CYS A 111 137.58 -36.87 REMARK 500 VAL A 190 145.82 -170.07 REMARK 500 HIS A 258 -108.68 50.24 REMARK 500 ASN A 306 57.99 -96.51 REMARK 500 PRO A 373 129.78 -39.52 REMARK 500 ALA A 402 -134.51 46.55 REMARK 500 THR A 410 -20.48 85.50 REMARK 500 THR A 410 -20.07 85.50 REMARK 500 LEU A 458 71.65 -106.79 REMARK 500 ASP A 496 87.23 -163.92 REMARK 500 ASP A 498 133.11 170.88 REMARK 500 GLU A 499 8.57 -68.43 REMARK 500 HIS A 501 122.51 -36.38 REMARK 500 GLU A 522 138.55 -172.63 REMARK 500 ARG A 527 142.11 -20.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 250 ASP A 251 -149.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 605 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 148 O REMARK 620 2 SER A 150 O 87.8 REMARK 620 3 TYR A 153 O 102.4 75.5 REMARK 620 4 HOH A 907 O 81.6 167.8 101.0 REMARK 620 5 HOH A 908 O 170.2 89.1 67.8 100.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 601 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 305 NE2 REMARK 620 2 HIS A 307 ND1 94.6 REMARK 620 3 GLU A 377 OE2 151.5 95.3 REMARK 620 4 GLU A 377 OE1 93.0 95.9 59.4 REMARK 620 5 ASP A 403 OD2 86.9 175.0 85.5 88.8 REMARK 620 6 O A 603 O 110.7 92.6 95.5 154.1 82.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 602 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 309 OD2 REMARK 620 2 HIS A 310 NE2 92.4 REMARK 620 3 ASP A 403 OD2 171.7 82.7 REMARK 620 4 O A 603 O 113.8 100.7 61.0 REMARK 620 5 ACT A 604 O 86.7 167.3 99.6 91.2 REMARK 620 6 ACT A 604 OXT 92.6 106.6 95.2 140.9 60.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 606 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 366 O REMARK 620 2 ARG A 392 O 77.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE O A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 608 DBREF 4JO0 A 0 532 UNP F2RB80 F2RB80_STRVP 1 532 SEQADV 4JO0 SER A -2 UNP F2RB80 EXPRESSION TAG SEQADV 4JO0 HIS A -1 UNP F2RB80 EXPRESSION TAG SEQADV 4JO0 ASN A 189 UNP F2RB80 ASP 190 CONFLICT SEQRES 1 A 534 SER HIS MET ARG TYR SER LEU ARG GLN ASP ILE ALA VAL SEQRES 2 A 534 GLU PRO VAL ILE ALA GLY TRP TYR GLY TRP SER TYR LEU SEQRES 3 A 534 LEU PRO PRO GLN THR LEU ALA ARG PHE VAL HIS ASN ARG SEQRES 4 A 534 PHE ASN ARG ILE VAL GLU SER TYR LEU ASP ASP PRO GLN SEQRES 5 A 534 VAL HIS ALA ALA ALA VAL ARG GLN ARG ARG MET HIS GLY SEQRES 6 A 534 GLY PRO TRP ILE HIS ALA HIS GLU HIS ARG ASP ALA ILE SEQRES 7 A 534 GLU ALA TRP TYR ARG GLU THR ALA PRO ARG ARG GLU ARG SEQRES 8 A 534 LEU ASP GLU LEU PHE GLU ALA VAL ARG ARG LEU GLU GLU SEQRES 9 A 534 ASP ILE LEU PRO ARG HIS HIS GLY GLU CYS LEU ASP PRO SEQRES 10 A 534 VAL TYR GLN GLU LEU PRO ALA ALA LEU ALA GLY ARG VAL SEQRES 11 A 534 GLU VAL PHE TYR GLY ARG ASP ASN ARG THR ALA ASP TYR SEQRES 12 A 534 ARG PHE VAL GLU PRO LEU MET TYR ALA SER GLU TYR TYR SEQRES 13 A 534 ASP GLU SER TRP GLN GLN VAL ARG PHE ARG PRO VAL THR SEQRES 14 A 534 GLU ASP ALA ARG GLU PHE ALA LEU THR THR PRO MET LEU SEQRES 15 A 534 GLU TYR GLY PRO GLU GLN LEU LEU VAL ASN VAL PRO LEU SEQRES 16 A 534 ASN SER PRO LEU LEU ASP ALA VAL PHE ARG GLY GLY LEU SEQRES 17 A 534 THR GLY THR GLU LEU ASP ASP LEU ALA ALA ARG PHE GLY SEQRES 18 A 534 LEU ASP GLY GLU ARG ALA ALA ARG PHE ALA SER TYR PHE SEQRES 19 A 534 GLU PRO THR PRO ALA ALA SER GLU ALA PRO ALA PRO ALA SEQRES 20 A 534 SER SER SER GLU GLU ASP VAL LEU GLU TYR VAL GLY HIS SEQRES 21 A 534 ALA CYS VAL PHE ALA ARG HIS ARG GLY THR THR PHE LEU SEQRES 22 A 534 VAL ASP PRO VAL LEU SER TYR SER GLY TYR PRO GLY GLY SEQRES 23 A 534 ALA GLU ASN ARG PHE THR PHE ALA ASP LEU PRO GLU ARG SEQRES 24 A 534 ILE ASP HIS LEU LEU ILE THR HIS ASN HIS GLN ASP HIS SEQRES 25 A 534 MET LEU PHE GLU THR LEU LEU ARG ILE ARG HIS ARG VAL SEQRES 26 A 534 GLY ARG VAL LEU VAL PRO LYS SER THR ASN ALA SER LEU SEQRES 27 A 534 VAL ASP PRO GLY LEU GLY GLY ILE LEU ARG ARG LEU GLY SEQRES 28 A 534 PHE THR ASP VAL VAL GLU VAL ASP ASP LEU GLU THR LEU SEQRES 29 A 534 SER CYS GLY SER ALA GLU VAL VAL ALA LEU PRO PHE LEU SEQRES 30 A 534 GLY GLU HIS GLY ASP LEU ARG ILE ARG SER LYS THR GLY SEQRES 31 A 534 TRP LEU ILE ARG PHE GLY GLU ARG SER VAL LEU PHE ALA SEQRES 32 A 534 ALA ASP SER THR ASN ILE SER PRO THR MET TYR THR LYS SEQRES 33 A 534 VAL ALA GLU VAL ILE GLY PRO VAL ASP THR VAL PHE ILE SEQRES 34 A 534 GLY MET GLU SER ILE GLY ALA ALA ALA SER TRP ILE TYR SEQRES 35 A 534 GLY PRO LEU TYR GLY GLU PRO LEU ASP ARG ARG THR ASP SEQRES 36 A 534 GLN SER ARG ARG LEU ASN GLY SER ASN PHE PRO GLN ALA SEQRES 37 A 534 ARG GLU ILE VAL ASP ALA LEU GLU PRO ASP GLU VAL TYR SEQRES 38 A 534 VAL TYR ALA MET GLY LEU GLU PRO TRP MET GLY VAL VAL SEQRES 39 A 534 MET ALA VAL ASP TYR ASP GLU SER HIS PRO ALA ILE VAL SEQRES 40 A 534 ASP SER ASP LEU LEU VAL ARG HIS VAL GLN ASP LYS GLY SEQRES 41 A 534 GLY THR ALA GLU ARG LEU HIS LEU ARG ARG THR LEU ARG SEQRES 42 A 534 LEU HET FE A 601 1 HET FE A 602 1 HET O A 603 1 HET ACT A 604 4 HET K A 605 1 HET K A 606 1 HET GOL A 607 6 HET GOL A 608 6 HETNAM FE FE (III) ION HETNAM O OXYGEN ATOM HETNAM ACT ACETATE ION HETNAM K POTASSIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 FE 2(FE 3+) FORMUL 4 O O FORMUL 5 ACT C2 H3 O2 1- FORMUL 6 K 2(K 1+) FORMUL 8 GOL 2(C3 H8 O3) FORMUL 10 HOH *152(H2 O) HELIX 1 1 TRP A 20 LEU A 24 5 5 HELIX 2 2 PRO A 25 ARG A 36 1 12 HELIX 3 3 ARG A 36 ASP A 47 1 12 HELIX 4 4 ASP A 47 ARG A 56 1 10 HELIX 5 5 GLN A 57 HIS A 61 5 5 HELIX 6 6 ALA A 68 GLU A 70 5 3 HELIX 7 7 HIS A 71 THR A 82 1 12 HELIX 8 8 THR A 82 ASP A 102 1 21 HELIX 9 9 ILE A 103 HIS A 107 5 5 HELIX 10 10 LEU A 112 GLU A 118 1 7 HELIX 11 11 VAL A 143 SER A 150 1 8 HELIX 12 12 ASP A 154 SER A 156 5 3 HELIX 13 13 SER A 194 GLY A 203 1 10 HELIX 14 14 THR A 206 PHE A 217 1 12 HELIX 15 15 ASP A 220 SER A 229 1 10 HELIX 16 16 THR A 290 LEU A 294 5 5 HELIX 17 17 LEU A 312 ARG A 320 1 9 HELIX 18 18 GLY A 340 LEU A 348 1 9 HELIX 19 19 THR A 410 GLY A 420 1 11 HELIX 20 20 ALA A 435 GLY A 441 1 7 HELIX 21 21 PRO A 442 TYR A 444 5 3 HELIX 22 22 ASP A 449 ARG A 456 1 8 HELIX 23 23 ASN A 462 GLU A 474 1 13 HELIX 24 24 GLU A 486 VAL A 492 5 7 HELIX 25 25 HIS A 501 LYS A 517 1 17 SHEET 1 A 2 TYR A 2 LEU A 4 0 SHEET 2 A 2 PHE A 231 PRO A 233 -1 O GLU A 232 N SER A 3 SHEET 1 B 4 TRP A 17 TYR A 18 0 SHEET 2 B 4 ILE A 8 ILE A 14 -1 N ILE A 14 O TRP A 17 SHEET 3 B 4 GLN A 158 PRO A 164 -1 O ARG A 161 N GLU A 11 SHEET 4 B 4 LEU A 186 ASN A 189 -1 O VAL A 188 N VAL A 160 SHEET 1 C 2 VAL A 127 TYR A 131 0 SHEET 2 C 2 ALA A 138 PHE A 142 -1 O ASP A 139 N PHE A 130 SHEET 1 D 7 VAL A 353 VAL A 356 0 SHEET 2 D 7 VAL A 323 PRO A 329 1 N VAL A 326 O VAL A 354 SHEET 3 D 7 ILE A 298 LEU A 302 1 N LEU A 301 O ARG A 325 SHEET 4 D 7 THR A 268 VAL A 272 1 N LEU A 271 O LEU A 302 SHEET 5 D 7 CYS A 260 HIS A 265 -1 N HIS A 265 O THR A 268 SHEET 6 D 7 VAL A 252 GLY A 257 -1 N GLU A 254 O PHE A 262 SHEET 7 D 7 ARG A 528 LEU A 530 -1 O ARG A 528 N TYR A 255 SHEET 1 E 7 THR A 361 CYS A 364 0 SHEET 2 E 7 ALA A 367 PRO A 373 -1 O VAL A 369 N LEU A 362 SHEET 3 E 7 THR A 387 PHE A 393 -1 O LEU A 390 N VAL A 370 SHEET 4 E 7 ARG A 396 PHE A 400 -1 O ARG A 396 N PHE A 393 SHEET 5 E 7 THR A 424 GLY A 428 1 O PHE A 426 N LEU A 399 SHEET 6 E 7 GLU A 477 TYR A 481 1 O GLU A 477 N VAL A 425 SHEET 7 E 7 THR A 520 ARG A 523 1 O GLU A 522 N VAL A 480 LINK O TYR A 148 K K A 605 1555 1555 2.75 LINK O SER A 150 K K A 605 1555 1555 2.74 LINK O TYR A 153 K K A 605 1555 1555 2.73 LINK NE2 HIS A 305 FE FE A 601 1555 1555 2.25 LINK ND1 HIS A 307 FE FE A 601 1555 1555 2.04 LINK OD2 ASP A 309 FE FE A 602 1555 1555 2.05 LINK NE2 HIS A 310 FE FE A 602 1555 1555 2.34 LINK O SER A 366 K K A 606 1555 1555 3.33 LINK OE2 GLU A 377 FE FE A 601 1555 1555 2.16 LINK OE1 GLU A 377 FE FE A 601 1555 1555 2.24 LINK O ARG A 392 K K A 606 1555 1555 3.49 LINK OD2 ASP A 403 FE FE A 601 1555 1555 1.98 LINK OD2 ASP A 403 FE FE A 602 1555 1555 2.62 LINK FE FE A 601 O O A 603 1555 1555 1.73 LINK FE FE A 602 O O A 603 1555 1555 2.14 LINK FE FE A 602 O ACT A 604 1555 1555 2.07 LINK FE FE A 602 OXT ACT A 604 1555 1555 2.33 LINK K K A 605 O HOH A 907 1555 1555 3.31 LINK K K A 605 O HOH A 908 1555 1555 2.93 SITE 1 AC1 6 HIS A 305 HIS A 307 GLU A 377 ASP A 403 SITE 2 AC1 6 FE A 602 O A 603 SITE 1 AC2 6 ASP A 309 HIS A 310 ASP A 403 FE A 601 SITE 2 AC2 6 O A 603 ACT A 604 SITE 1 AC3 9 HIS A 305 HIS A 307 ASP A 309 HIS A 310 SITE 2 AC3 9 GLU A 377 ASP A 403 FE A 601 FE A 602 SITE 3 AC3 9 ACT A 604 SITE 1 AC4 7 ASP A 309 ASP A 403 GLU A 430 ALA A 482 SITE 2 AC4 7 MET A 493 FE A 602 O A 603 SITE 1 AC5 5 TYR A 148 ALA A 149 SER A 150 TYR A 153 SITE 2 AC5 5 HOH A 908 SITE 1 AC6 3 SER A 366 ARG A 392 GLY A 394 SITE 1 AC7 6 ASP A 198 ARG A 320 VAL A 323 GLY A 349 SITE 2 AC7 6 THR A 351 HOH A 822 SITE 1 AC8 11 TYR A 255 HIS A 258 VAL A 480 TYR A 481 SITE 2 AC8 11 ALA A 482 MET A 483 GLY A 484 LEU A 485 SITE 3 AC8 11 GLU A 486 ARG A 523 LEU A 524 CRYST1 153.158 153.158 93.356 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006529 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006529 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010712 0.00000