HEADER TRANSFERASE/TRANSFERASE INHIBITOR 18-MAR-13 4JOA TITLE CRYSTAL STRUCTURE OF HUMAN ANAPLASTIC LYMPHOMA KINASE IN COMPLEX WITH TITLE 2 7-AZAINDOLE BASED INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALK TYROSINE KINASE RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, UNP RESIDUES 1072-1410; COMPND 5 SYNONYM: ANAPLASTIC LYMPHOMA KINASE; COMPND 6 EC: 2.7.10.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ALK; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PFASTBACHTB KEYWDS ANAPLASTIC LYMPHOMA KINASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.HOSAHALLI,N.R.KRISHNAMURTHY,A.LAKSHMINARASIMHAN REVDAT 3 08-NOV-23 4JOA 1 REMARK SEQADV REVDAT 2 23-APR-14 4JOA 1 JRNL REVDAT 1 17-JUL-13 4JOA 0 JRNL AUTH V.R.GUMMADI,S.RAJAGOPALAN,C.Y.LOOI,M.PAYDAR,G.A.RENUKAPPA, JRNL AUTH 2 B.R.AINAN,N.R.KRISHNAMURTHY,S.K.PANIGRAHI,K.MAHASWETA, JRNL AUTH 3 S.RAGHURAMACHANDRAN,M.RAJAPPA,A.RAMANATHAN, JRNL AUTH 4 A.LAKSHMINARASIMHAN,M.RAMACHANDRA,P.F.WONG,M.R.MUSTAFA, JRNL AUTH 5 S.NANDURI,S.HOSAHALLI JRNL TITL DISCOVERY OF 7-AZAINDOLE BASED ANAPLASTIC LYMPHOMA KINASE JRNL TITL 2 (ALK) INHIBITORS: WILD TYPE AND MUTANT (L1196M) ACTIVE JRNL TITL 3 COMPOUNDS WITH UNIQUE BINDING MODE JRNL REF BIOORG.MED.CHEM.LETT. V. 23 4911 2013 JRNL REFN ISSN 0960-894X JRNL PMID 23880539 JRNL DOI 10.1016/J.BMCL.2013.06.071 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0001 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 87.0 REMARK 3 NUMBER OF REFLECTIONS : 7358 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.253 REMARK 3 R VALUE (WORKING SET) : 0.251 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 370 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 538 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3140 REMARK 3 BIN FREE R VALUE SET COUNT : 36 REMARK 3 BIN FREE R VALUE : 0.5480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1946 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 26 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.31000 REMARK 3 B22 (A**2) : -2.06000 REMARK 3 B33 (A**2) : 4.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.431 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.292 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.506 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.902 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.862 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2010 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1837 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2728 ; 1.181 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4255 ; 0.715 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 242 ; 5.039 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 84 ;32.313 ;23.690 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 322 ;15.305 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;13.849 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 300 ; 0.055 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2194 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 400 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 458 ; 0.190 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1914 ; 0.158 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1150 ; 0.078 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 49 ; 0.117 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.093 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 21 ; 0.117 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1279 ; 0.284 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 498 ; 0.029 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1996 ; 0.494 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 850 ; 0.377 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 732 ; 0.616 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4JOA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000078296. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8211 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.47300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3LCS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.5, 20% PEG 8000, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.89700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.26800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.25150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.26800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.89700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.25150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1067 REMARK 465 ALA A 1068 REMARK 465 MET A 1069 REMARK 465 GLY A 1070 REMARK 465 SER A 1071 REMARK 465 GLU A 1072 REMARK 465 LEU A 1073 REMARK 465 GLN A 1074 REMARK 465 SER A 1075 REMARK 465 PRO A 1076 REMARK 465 GLU A 1077 REMARK 465 TYR A 1078 REMARK 465 LYS A 1079 REMARK 465 LEU A 1080 REMARK 465 SER A 1081 REMARK 465 LYS A 1082 REMARK 465 LEU A 1083 REMARK 465 ARG A 1084 REMARK 465 THR A 1085 REMARK 465 SER A 1086 REMARK 465 THR A 1087 REMARK 465 ILE A 1088 REMARK 465 MET A 1089 REMARK 465 THR A 1090 REMARK 465 ASP A 1091 REMARK 465 TYR A 1092 REMARK 465 ASN A 1093 REMARK 465 PRO A 1094 REMARK 465 ASN A 1095 REMARK 465 TYR A 1096 REMARK 465 CYS A 1097 REMARK 465 PHE A 1098 REMARK 465 ALA A 1099 REMARK 465 GLY A 1100 REMARK 465 LYS A 1101 REMARK 465 THR A 1102 REMARK 465 SER A 1103 REMARK 465 SER A 1104 REMARK 465 ILE A 1105 REMARK 465 SER A 1106 REMARK 465 HIS A 1124 REMARK 465 GLY A 1125 REMARK 465 ALA A 1126 REMARK 465 PHE A 1127 REMARK 465 GLY A 1128 REMARK 465 GLU A 1129 REMARK 465 GLY A 1137 REMARK 465 MET A 1138 REMARK 465 PRO A 1139 REMARK 465 ASN A 1140 REMARK 465 ASP A 1141 REMARK 465 PRO A 1142 REMARK 465 SER A 1143 REMARK 465 PRO A 1144 REMARK 465 GLU A 1154 REMARK 465 VAL A 1155 REMARK 465 CYS A 1156 REMARK 465 SER A 1157 REMARK 465 GLU A 1158 REMARK 465 GLN A 1159 REMARK 465 ASP A 1160 REMARK 465 GLU A 1161 REMARK 465 LEU A 1162 REMARK 465 PRO A 1215 REMARK 465 SER A 1216 REMARK 465 GLN A 1217 REMARK 465 PRO A 1218 REMARK 465 SER A 1219 REMARK 465 SER A 1220 REMARK 465 ARG A 1279 REMARK 465 ALA A 1280 REMARK 465 GLY A 1281 REMARK 465 TYR A 1282 REMARK 465 TYR A 1283 REMARK 465 ARG A 1284 REMARK 465 LYS A 1285 REMARK 465 GLY A 1286 REMARK 465 GLY A 1287 REMARK 465 PHE A 1301 REMARK 465 MET A 1302 REMARK 465 GLU A 1303 REMARK 465 ILE A 1399 REMARK 465 GLU A 1400 REMARK 465 TYR A 1401 REMARK 465 GLY A 1402 REMARK 465 PRO A 1403 REMARK 465 LEU A 1404 REMARK 465 VAL A 1405 REMARK 465 GLU A 1406 REMARK 465 GLU A 1407 REMARK 465 GLU A 1408 REMARK 465 GLU A 1409 REMARK 465 LYS A 1410 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A1109 CG CD CE NZ REMARK 470 VAL A1130 CG1 CG2 REMARK 470 SER A1136 OG REMARK 470 MET A1166 CG SD CE REMARK 470 LEU A1187 CG CD1 CD2 REMARK 470 GLN A1188 CG CD OE1 NE2 REMARK 470 LEU A1190 CG CD1 CD2 REMARK 470 ARG A1192 CG CD NE CZ NH1 NH2 REMARK 470 ARG A1214 CG CD NE CZ NH1 NH2 REMARK 470 ARG A1248 CG CD NE CZ NH1 NH2 REMARK 470 CYS A1288 CA CB SG REMARK 470 ILE A1305 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB VAL A 1130 O HOH A 1618 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU A1165 C MET A1166 N 0.245 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A1164 CB - CA - C ANGL. DEV. = -13.6 DEGREES REMARK 500 MET A1166 C - N - CA ANGL. DEV. = -15.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A1249 26.43 -152.75 REMARK 500 LEU A1325 48.01 74.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LEU A1165 -11.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3DK A 1501 DBREF 4JOA A 1072 1410 UNP Q9UM73 ALK_HUMAN 1072 1410 SEQADV 4JOA GLY A 1067 UNP Q9UM73 EXPRESSION TAG SEQADV 4JOA ALA A 1068 UNP Q9UM73 EXPRESSION TAG SEQADV 4JOA MET A 1069 UNP Q9UM73 EXPRESSION TAG SEQADV 4JOA GLY A 1070 UNP Q9UM73 EXPRESSION TAG SEQADV 4JOA SER A 1071 UNP Q9UM73 EXPRESSION TAG SEQADV 4JOA GLY A 1281 UNP Q9UM73 SER 1281 ENGINEERED MUTATION SEQRES 1 A 344 GLY ALA MET GLY SER GLU LEU GLN SER PRO GLU TYR LYS SEQRES 2 A 344 LEU SER LYS LEU ARG THR SER THR ILE MET THR ASP TYR SEQRES 3 A 344 ASN PRO ASN TYR CYS PHE ALA GLY LYS THR SER SER ILE SEQRES 4 A 344 SER ASP LEU LYS GLU VAL PRO ARG LYS ASN ILE THR LEU SEQRES 5 A 344 ILE ARG GLY LEU GLY HIS GLY ALA PHE GLY GLU VAL TYR SEQRES 6 A 344 GLU GLY GLN VAL SER GLY MET PRO ASN ASP PRO SER PRO SEQRES 7 A 344 LEU GLN VAL ALA VAL LYS THR LEU PRO GLU VAL CYS SER SEQRES 8 A 344 GLU GLN ASP GLU LEU ASP PHE LEU MET GLU ALA LEU ILE SEQRES 9 A 344 ILE SER LYS PHE ASN HIS GLN ASN ILE VAL ARG CYS ILE SEQRES 10 A 344 GLY VAL SER LEU GLN SER LEU PRO ARG PHE ILE LEU LEU SEQRES 11 A 344 GLU LEU MET ALA GLY GLY ASP LEU LYS SER PHE LEU ARG SEQRES 12 A 344 GLU THR ARG PRO ARG PRO SER GLN PRO SER SER LEU ALA SEQRES 13 A 344 MET LEU ASP LEU LEU HIS VAL ALA ARG ASP ILE ALA CYS SEQRES 14 A 344 GLY CYS GLN TYR LEU GLU GLU ASN HIS PHE ILE HIS ARG SEQRES 15 A 344 ASP ILE ALA ALA ARG ASN CYS LEU LEU THR CYS PRO GLY SEQRES 16 A 344 PRO GLY ARG VAL ALA LYS ILE GLY ASP PHE GLY MET ALA SEQRES 17 A 344 ARG ASP ILE TYR ARG ALA GLY TYR TYR ARG LYS GLY GLY SEQRES 18 A 344 CYS ALA MET LEU PRO VAL LYS TRP MET PRO PRO GLU ALA SEQRES 19 A 344 PHE MET GLU GLY ILE PHE THR SER LYS THR ASP THR TRP SEQRES 20 A 344 SER PHE GLY VAL LEU LEU TRP GLU ILE PHE SER LEU GLY SEQRES 21 A 344 TYR MET PRO TYR PRO SER LYS SER ASN GLN GLU VAL LEU SEQRES 22 A 344 GLU PHE VAL THR SER GLY GLY ARG MET ASP PRO PRO LYS SEQRES 23 A 344 ASN CYS PRO GLY PRO VAL TYR ARG ILE MET THR GLN CYS SEQRES 24 A 344 TRP GLN HIS GLN PRO GLU ASP ARG PRO ASN PHE ALA ILE SEQRES 25 A 344 ILE LEU GLU ARG ILE GLU TYR CYS THR GLN ASP PRO ASP SEQRES 26 A 344 VAL ILE ASN THR ALA LEU PRO ILE GLU TYR GLY PRO LEU SEQRES 27 A 344 VAL GLU GLU GLU GLU LYS HET 3DK A1501 29 HETNAM 3DK 3-[1-(2,5-DIFLUOROBENZYL)-1H-PYRAZOL-4-YL]-5-(1-METHYL- HETNAM 2 3DK 1H-PYRAZOL-4-YL)-1H-PYRROLO[2,3-B]PYRIDINE FORMUL 2 3DK C21 H16 F2 N6 FORMUL 3 HOH *26(H2 O) HELIX 1 1 PRO A 1112 LYS A 1114 5 3 HELIX 2 2 PHE A 1164 LYS A 1173 1 10 HELIX 3 3 LEU A 1204 THR A 1211 1 8 HELIX 4 4 ALA A 1222 ASN A 1243 1 22 HELIX 5 5 ALA A 1251 ARG A 1253 5 3 HELIX 6 6 PHE A 1271 TYR A 1278 1 8 HELIX 7 7 PRO A 1292 MET A 1296 5 5 HELIX 8 8 THR A 1307 LEU A 1325 1 19 HELIX 9 9 SER A 1334 SER A 1344 1 11 HELIX 10 10 PRO A 1355 TRP A 1366 1 12 HELIX 11 11 GLN A 1369 ARG A 1373 5 5 HELIX 12 12 ASN A 1375 ASP A 1389 1 15 HELIX 13 13 ASP A 1389 ASN A 1394 1 6 SHEET 1 A 5 ILE A1116 GLY A1121 0 SHEET 2 A 5 TYR A1131 VAL A1135 -1 O GLU A1132 N ARG A1120 SHEET 3 A 5 GLN A1146 THR A1151 -1 O VAL A1147 N GLY A1133 SHEET 4 A 5 PHE A1193 GLU A1197 -1 O LEU A1196 N ALA A1148 SHEET 5 A 5 CYS A1182 SER A1186 -1 N GLY A1184 O LEU A1195 SHEET 1 B 3 GLY A1202 ASP A1203 0 SHEET 2 B 3 CYS A1255 LEU A1257 -1 O LEU A1257 N GLY A1202 SHEET 3 B 3 ALA A1266 ILE A1268 -1 O LYS A1267 N LEU A1256 CISPEP 1 LEU A 1190 PRO A 1191 0 7.17 SITE 1 AC1 11 ALA A1148 GLU A1167 ILE A1171 ILE A1194 SITE 2 AC1 11 LEU A1196 GLU A1197 MET A1199 GLY A1202 SITE 3 AC1 11 LEU A1256 GLY A1269 ARG A1275 CRYST1 51.794 56.503 104.536 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019307 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017698 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009566 0.00000