HEADER HYDROLASE 19-MAR-13 4JP8 TITLE CRYSTAL STRUCTURE OF PRO-F17H/S324A COMPND MOL_ID: 1; COMPND 2 MOLECULE: TK-SUBTILISIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 25-422; COMPND 5 EC: 3.4.21.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS KODAKARENSIS; SOURCE 3 ORGANISM_TAXID: 69014; SOURCE 4 STRAIN: ATCC BAA-918 / JCM 12380 / KOD1; SOURCE 5 GENE: TK1675; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET25B KEYWDS SUBTILISIN-LIKE SERINE PROTEASE, HYDROLASE, SUBTILLISIN, THERMOCOCCUS KEYWDS 2 KODAKARENSIS EXPDTA X-RAY DIFFRACTION AUTHOR K.YUZAKI,D.J.YOU,R.UEHARA,Y.KOGA,S.KANAYA REVDAT 3 08-NOV-23 4JP8 1 REMARK SEQADV LINK REVDAT 2 15-NOV-17 4JP8 1 REMARK REVDAT 1 29-JAN-14 4JP8 0 JRNL AUTH K.YUZAKI,Y.SANDA,D.J.YOU,R.UEHARA,Y.KOGA,S.KANAYA JRNL TITL INCREASE IN ACTIVATION RATE OF PRO-TK-SUBTILISIN BY A SINGLE JRNL TITL 2 NONPOLAR-TO-POLAR AMINO ACID SUBSTITUTION AT THE HYDROPHOBIC JRNL TITL 3 CORE OF THE PROPEPTIDE DOMAIN JRNL REF PROTEIN SCI. V. 22 1711 2013 JRNL REFN ISSN 0961-8368 JRNL PMID 24115021 JRNL DOI 10.1002/PRO.2371 REMARK 2 REMARK 2 RESOLUTION. 2.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 22103 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1129 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.21 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.27 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1463 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.3320 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.3780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2893 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 79 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.43000 REMARK 3 B22 (A**2) : -4.42000 REMARK 3 B33 (A**2) : -4.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.298 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.238 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.207 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.423 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2955 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4045 ; 0.980 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 394 ; 8.612 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 114 ;38.001 ;25.439 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 435 ;21.337 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;22.916 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 470 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2261 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1954 ; 1.238 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3146 ; 2.203 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1001 ; 3.768 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 899 ; 5.283 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4JP8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000078330. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : HORIZONTAL FOCUSING MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER SMART 6500 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22172 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 17.70 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : 0.09700 REMARK 200 FOR THE DATA SET : 37.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 15.70 REMARK 200 R MERGE FOR SHELL (I) : 0.48900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP, DM 6.1 REMARK 200 STARTING MODEL: 2E1P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20MM TRIS-HCL PH7.0, 4M SODIUM FORMATE REMARK 280 , VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 38.66150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.24900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 61.11100 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 38.66150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.24900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 61.11100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 38.66150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 46.24900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 61.11100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 38.66150 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 46.24900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 61.11100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE MATTHEWS COEFFICIENT AND THE SOLVENT CONTENT: REMARK 300 SOLVENT CONTENT, VS (%): 53.91 REMARK 300 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 GLU A 2 REMARK 465 GLN A 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 210 CA CA A 702 1.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 115 -165.17 -173.27 REMARK 500 ASN A 166 -170.44 -171.30 REMARK 500 ALA A 211 -78.05 -61.09 REMARK 500 ASP A 212 70.04 -114.55 REMARK 500 ILE A 219 -85.76 -128.48 REMARK 500 VAL A 230 106.22 -170.17 REMARK 500 ASP A 315 72.17 55.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 84 OE1 REMARK 620 2 ASP A 124 OD1 151.6 REMARK 620 3 ASP A 124 OD2 157.4 50.5 REMARK 620 4 LEU A 164 O 78.6 85.5 107.0 REMARK 620 5 ASN A 166 OD1 89.8 67.8 111.3 93.7 REMARK 620 6 ILE A 168 O 92.9 96.4 86.2 164.0 72.6 REMARK 620 7 VAL A 170 O 95.2 105.0 65.2 79.5 170.6 115.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 705 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 108 O REMARK 620 2 GLN A 110 OE1 86.0 REMARK 620 3 ALA A 227 O 159.4 79.5 REMARK 620 4 GLU A 229 OE1 91.9 147.3 92.4 REMARK 620 5 GLU A 229 OE2 76.2 92.4 89.8 55.6 REMARK 620 6 HOH A 803 O 117.4 149.5 81.6 56.9 111.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 702 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 205 O REMARK 620 2 ASP A 208 OD1 75.0 REMARK 620 3 ALA A 211 O 117.9 133.7 REMARK 620 4 ASP A 226 OD2 86.2 81.7 139.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 703 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 212 OD1 REMARK 620 2 ASP A 214 OD2 65.8 REMARK 620 3 ASP A 214 OD1 119.3 56.9 REMARK 620 4 ASP A 216 OD1 83.3 115.8 103.6 REMARK 620 5 ILE A 218 O 99.2 147.1 140.3 89.6 REMARK 620 6 ASP A 222 OD1 161.0 106.3 49.5 85.1 95.9 REMARK 620 7 ASP A 225 OD2 100.8 66.7 74.8 175.8 89.3 91.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 704 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 214 OD1 REMARK 620 2 ASP A 216 OD2 84.9 REMARK 620 3 ASP A 222 OD1 53.9 71.5 REMARK 620 4 ASP A 222 OD2 71.7 119.4 49.3 REMARK 620 5 ASP A 224 OD2 98.0 167.4 120.0 73.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 706 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 372 OD1 REMARK 620 2 LEU A 373 O 84.0 REMARK 620 3 PRO A 375 O 96.4 88.7 REMARK 620 4 GLY A 377 O 99.8 169.4 81.1 REMARK 620 5 ASP A 379 OD1 151.0 71.5 98.2 107.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 706 DBREF 4JP8 A 1 398 UNP P58502 TKSU_PYRKO 25 422 SEQADV 4JP8 HIS A 17 UNP P58502 PHE 41 ENGINEERED MUTATION SEQADV 4JP8 ALA A 324 UNP P58502 SER 348 ENGINEERED MUTATION SEQRES 1 A 398 GLY GLU GLN ASN THR ILE ARG VAL ILE VAL SER VAL ASP SEQRES 2 A 398 LYS ALA LYS HIS ASN PRO HIS GLU VAL LEU GLY ILE GLY SEQRES 3 A 398 GLY HIS ILE VAL TYR GLN PHE LYS LEU ILE PRO ALA VAL SEQRES 4 A 398 VAL VAL ASP VAL PRO ALA ASN ALA VAL GLY LYS LEU LYS SEQRES 5 A 398 LYS MET PRO GLY VAL GLU LYS VAL GLU PHE ASP HIS GLN SEQRES 6 A 398 ALA VAL LEU LEU GLY LYS PRO SER TRP LEU GLY GLY GLY SEQRES 7 A 398 SER THR GLN PRO ALA GLN THR ILE PRO TRP GLY ILE GLU SEQRES 8 A 398 ARG VAL LYS ALA PRO SER VAL TRP SER ILE THR ASP GLY SEQRES 9 A 398 SER VAL SER VAL ILE GLN VAL ALA VAL LEU ASP THR GLY SEQRES 10 A 398 VAL ASP TYR ASP HIS PRO ASP LEU ALA ALA ASN ILE ALA SEQRES 11 A 398 TRP CYS VAL SER THR LEU ARG GLY LYS VAL SER THR LYS SEQRES 12 A 398 LEU ARG ASP CYS ALA ASP GLN ASN GLY HIS GLY THR HIS SEQRES 13 A 398 VAL ILE GLY THR ILE ALA ALA LEU ASN ASN ASP ILE GLY SEQRES 14 A 398 VAL VAL GLY VAL ALA PRO GLY VAL GLN ILE TYR SER VAL SEQRES 15 A 398 ARG VAL LEU ASP ALA ARG GLY SER GLY SER TYR SER ASP SEQRES 16 A 398 ILE ALA ILE GLY ILE GLU GLN ALA ILE LEU GLY PRO ASP SEQRES 17 A 398 GLY VAL ALA ASP LYS ASP GLY ASP GLY ILE ILE ALA GLY SEQRES 18 A 398 ASP PRO ASP ASP ASP ALA ALA GLU VAL ILE SER MET SER SEQRES 19 A 398 LEU GLY GLY PRO ALA ASP ASP SER TYR LEU TYR ASP MET SEQRES 20 A 398 ILE ILE GLN ALA TYR ASN ALA GLY ILE VAL ILE VAL ALA SEQRES 21 A 398 ALA SER GLY ASN GLU GLY ALA PRO SER PRO SER TYR PRO SEQRES 22 A 398 ALA ALA TYR PRO GLU VAL ILE ALA VAL GLY ALA ILE ASP SEQRES 23 A 398 SER ASN ASP ASN ILE ALA SER PHE SER ASN ARG GLN PRO SEQRES 24 A 398 GLU VAL SER ALA PRO GLY VAL ASP ILE LEU SER THR TYR SEQRES 25 A 398 PRO ASP ASP SER TYR GLU THR LEU MET GLY THR ALA MET SEQRES 26 A 398 ALA THR PRO HIS VAL SER GLY VAL VAL ALA LEU ILE GLN SEQRES 27 A 398 ALA ALA TYR TYR GLN LYS TYR GLY LYS ILE LEU PRO VAL SEQRES 28 A 398 GLY THR PHE ASP ASP ILE SER LYS ASN THR VAL ARG GLY SEQRES 29 A 398 ILE LEU HIS ILE THR ALA ASP ASP LEU GLY PRO THR GLY SEQRES 30 A 398 TRP ASP ALA ASP TYR GLY TYR GLY VAL VAL ARG ALA ALA SEQRES 31 A 398 LEU ALA VAL GLN ALA ALA LEU GLY HET CA A 701 1 HET CA A 702 1 HET CA A 703 1 HET CA A 704 1 HET CA A 705 1 HET CA A 706 1 HETNAM CA CALCIUM ION FORMUL 2 CA 6(CA 2+) FORMUL 8 HOH *79(H2 O) HELIX 1 1 PRO A 19 ILE A 25 1 7 HELIX 2 2 PRO A 44 ASN A 46 5 3 HELIX 3 3 ALA A 47 MET A 54 1 8 HELIX 4 4 PRO A 87 VAL A 93 1 7 HELIX 5 5 ALA A 95 ILE A 101 5 7 HELIX 6 6 LEU A 125 ALA A 127 5 3 HELIX 7 7 LEU A 136 LYS A 139 5 4 HELIX 8 8 LYS A 143 ALA A 148 1 6 HELIX 9 9 GLY A 152 ALA A 163 1 12 HELIX 10 10 TYR A 193 GLY A 206 1 14 HELIX 11 11 ASP A 241 ALA A 254 1 14 HELIX 12 12 GLY A 322 TYR A 345 1 24 HELIX 13 13 THR A 361 ALA A 370 1 10 HELIX 14 14 ARG A 388 GLY A 398 1 11 SHEET 1 A 4 HIS A 28 GLN A 32 0 SHEET 2 A 4 ALA A 38 VAL A 43 -1 O VAL A 40 N VAL A 30 SHEET 3 A 4 ILE A 6 VAL A 12 -1 N VAL A 10 O VAL A 39 SHEET 4 A 4 VAL A 57 PHE A 62 -1 O GLU A 61 N ILE A 9 SHEET 1 B 3 SER A 190 SER A 192 0 SHEET 2 B 3 GLN A 65 LEU A 68 -1 N ALA A 66 O GLY A 191 SHEET 3 B 3 LEU A 235 GLY A 236 -1 O GLY A 236 N VAL A 67 SHEET 1 C 3 LYS A 71 PRO A 72 0 SHEET 2 C 3 SER A 316 MET A 321 -1 O MET A 321 N LYS A 71 SHEET 3 C 3 ILE A 308 TYR A 312 -1 N TYR A 312 O SER A 316 SHEET 1 D 7 ILE A 129 SER A 134 0 SHEET 2 D 7 GLN A 178 ARG A 183 1 O ARG A 183 N VAL A 133 SHEET 3 D 7 GLN A 110 ASP A 115 1 N VAL A 111 O GLN A 178 SHEET 4 D 7 VAL A 230 MET A 233 1 O SER A 232 N ALA A 112 SHEET 5 D 7 VAL A 257 ALA A 261 1 O VAL A 259 N MET A 233 SHEET 6 D 7 ILE A 280 ILE A 285 1 O ILE A 280 N ILE A 258 SHEET 7 D 7 VAL A 301 PRO A 304 1 O VAL A 301 N GLY A 283 LINK OE1 GLN A 84 CA CA A 701 1555 1555 2.38 LINK O VAL A 108 CA CA A 705 1555 1555 1.94 LINK OE1 GLN A 110 CA CA A 705 1555 1555 2.10 LINK OD1 ASP A 124 CA CA A 701 1555 1555 2.40 LINK OD2 ASP A 124 CA CA A 701 1555 1555 2.53 LINK O LEU A 164 CA CA A 701 1555 1555 2.22 LINK OD1 ASN A 166 CA CA A 701 1555 1555 2.80 LINK O ILE A 168 CA CA A 701 1555 1555 2.06 LINK O VAL A 170 CA CA A 701 1555 1555 2.56 LINK O LEU A 205 CA CA A 702 1555 1555 2.49 LINK OD1 ASP A 208 CA CA A 702 1555 1555 2.72 LINK O ALA A 211 CA CA A 702 1555 1555 3.17 LINK OD1 ASP A 212 CA CA A 703 1555 1555 2.73 LINK OD2 ASP A 214 CA CA A 703 1555 1555 2.13 LINK OD1 ASP A 214 CA CA A 703 1555 1555 2.45 LINK OD1 ASP A 214 CA CA A 704 1555 1555 2.68 LINK OD1 ASP A 216 CA CA A 703 1555 1555 2.24 LINK OD2 ASP A 216 CA CA A 704 1555 1555 2.55 LINK O ILE A 218 CA CA A 703 1555 1555 2.01 LINK OD1 ASP A 222 CA CA A 703 1555 1555 2.78 LINK OD1 ASP A 222 CA CA A 704 1555 1555 2.02 LINK OD2 ASP A 222 CA CA A 704 1555 1555 2.82 LINK OD2 ASP A 224 CA CA A 704 1555 1555 2.44 LINK OD2 ASP A 225 CA CA A 703 1555 1555 1.87 LINK OD2 ASP A 226 CA CA A 702 1555 1555 2.14 LINK O ALA A 227 CA CA A 705 1555 1555 1.96 LINK OE1 GLU A 229 CA CA A 705 1555 1555 2.18 LINK OE2 GLU A 229 CA CA A 705 1555 1555 2.50 LINK OD1 ASP A 372 CA CA A 706 1555 1555 2.17 LINK O LEU A 373 CA CA A 706 1555 1555 2.34 LINK O PRO A 375 CA CA A 706 1555 1555 2.24 LINK O GLY A 377 CA CA A 706 1555 1555 2.36 LINK OD1 ASP A 379 CA CA A 706 1555 1555 2.98 LINK CA CA A 705 O HOH A 803 1555 1555 2.61 CISPEP 1 TYR A 272 PRO A 273 0 14.66 SITE 1 AC1 6 GLN A 84 ASP A 124 LEU A 164 ASN A 166 SITE 2 AC1 6 ILE A 168 VAL A 170 SITE 1 AC2 5 LEU A 205 ASP A 208 VAL A 210 ALA A 211 SITE 2 AC2 5 ASP A 226 SITE 1 AC3 6 ASP A 212 ASP A 214 ASP A 216 ILE A 218 SITE 2 AC3 6 ASP A 222 ASP A 225 SITE 1 AC4 4 ASP A 214 ASP A 216 ASP A 222 ASP A 224 SITE 1 AC5 5 VAL A 108 GLN A 110 ALA A 227 GLU A 229 SITE 2 AC5 5 HOH A 803 SITE 1 AC6 5 ASP A 372 LEU A 373 PRO A 375 GLY A 377 SITE 2 AC6 5 ASP A 379 CRYST1 77.323 92.498 122.222 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012933 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010811 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008182 0.00000