HEADER CYTOKINE 19-MAR-13 4JPH TITLE CRYSTAL STRUCTURE OF PROTEIN RELATED TO DAN AND CERBERUS (PRDC) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GREMLIN-2; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 22-168; COMPND 5 SYNONYM: CYSTEINE KNOT SUPERFAMILY 1, BMP ANTAGONIST 2, PROTEIN COMPND 6 RELATED TO DAN AND CERBERUS; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: GREM2, CKTSF1B2, PRDC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CYSTINE KNOT, DAN DOMAIN, CAN DOMAIN, BMP ANTAGONIST, BMP-2, BMP-4, KEYWDS 2 BMP-7, GDF-5, GSH, EXTRACELLULAR, CYTOKINE EXPDTA X-RAY DIFFRACTION AUTHOR X.DENG,K.T.NOLAN,C.KATTAMURI,T.B.THOMPSON REVDAT 4 15-NOV-17 4JPH 1 REMARK REVDAT 3 28-AUG-13 4JPH 1 JRNL REVDAT 2 07-AUG-13 4JPH 1 JRNL REVDAT 1 24-JUL-13 4JPH 0 JRNL AUTH K.NOLAN,C.KATTAMURI,D.M.LUEDEKE,X.DENG,A.JAGPAL,F.ZHANG, JRNL AUTH 2 R.J.LINHARDT,A.P.KENNY,A.M.ZORN,T.B.THOMPSON JRNL TITL STRUCTURE OF PROTEIN RELATED TO DAN AND CERBERUS: INSIGHTS JRNL TITL 2 INTO THE MECHANISM OF BONE MORPHOGENETIC PROTEIN ANTAGONISM. JRNL REF STRUCTURE V. 21 1417 2013 JRNL REFN ISSN 0969-2126 JRNL PMID 23850456 JRNL DOI 10.1016/J.STR.2013.06.005 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 36786 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1838 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 18 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.31 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.27 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2827 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2327 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2689 REMARK 3 BIN R VALUE (WORKING SET) : 0.2316 REMARK 3 BIN FREE R VALUE : 0.2528 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.88 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 138 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3471 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 146 REMARK 3 SOLVENT ATOMS : 113 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 67.13 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 83.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.43530 REMARK 3 B22 (A**2) : -3.15760 REMARK 3 B33 (A**2) : 0.72230 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.85220 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.430 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.185 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.157 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.190 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.159 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3815 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5193 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1362 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 78 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 528 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3815 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 474 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3981 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.20 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.50 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.03 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -5.4339 16.9038 49.3294 REMARK 3 T TENSOR REMARK 3 T11: -0.4111 T22: -0.1997 REMARK 3 T33: -0.2743 T12: 0.0838 REMARK 3 T13: -0.0342 T23: 0.0536 REMARK 3 L TENSOR REMARK 3 L11: 6.7143 L22: 0.5624 REMARK 3 L33: -0.9281 L12: 1.9788 REMARK 3 L13: -1.3772 L23: 0.0037 REMARK 3 S TENSOR REMARK 3 S11: 0.1789 S12: 0.2713 S13: 0.8670 REMARK 3 S21: -0.0343 S22: -0.0711 S23: 0.1817 REMARK 3 S31: -0.0850 S32: 0.0353 S33: -0.1077 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -20.1101 5.6291 52.7170 REMARK 3 T TENSOR REMARK 3 T11: -0.3764 T22: -0.3871 REMARK 3 T33: -0.3388 T12: 0.1133 REMARK 3 T13: -0.0552 T23: -0.0540 REMARK 3 L TENSOR REMARK 3 L11: 5.4376 L22: 2.0933 REMARK 3 L33: 1.3029 L12: 3.2897 REMARK 3 L13: 1.7381 L23: 0.6936 REMARK 3 S TENSOR REMARK 3 S11: 0.1867 S12: -0.3440 S13: -0.3327 REMARK 3 S21: -0.0485 S22: -0.1332 S23: -0.0947 REMARK 3 S31: 0.1602 S32: 0.1247 S33: -0.0534 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): 11.0742 5.5989 19.2788 REMARK 3 T TENSOR REMARK 3 T11: -0.2613 T22: -0.4287 REMARK 3 T33: -0.4323 T12: -0.1148 REMARK 3 T13: -0.0497 T23: 0.0843 REMARK 3 L TENSOR REMARK 3 L11: 2.2187 L22: 2.3040 REMARK 3 L33: 6.7614 L12: 2.5177 REMARK 3 L13: 3.5422 L23: 3.5023 REMARK 3 S TENSOR REMARK 3 S11: 0.2851 S12: 0.0458 S13: 0.3239 REMARK 3 S21: 0.3058 S22: -0.0912 S23: 0.1872 REMARK 3 S31: 1.0098 S32: -0.5131 S33: -0.1939 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): 3.0328 0.1343 0.3326 REMARK 3 T TENSOR REMARK 3 T11: -0.2728 T22: -0.1623 REMARK 3 T33: -0.4767 T12: -0.2490 REMARK 3 T13: -0.0274 T23: 0.1707 REMARK 3 L TENSOR REMARK 3 L11: 3.6927 L22: 0.8084 REMARK 3 L33: 9.8437 L12: -0.2954 REMARK 3 L13: 6.4939 L23: 1.2804 REMARK 3 S TENSOR REMARK 3 S11: 0.3640 S12: 0.1664 S13: 0.0330 REMARK 3 S21: 0.3278 S22: -0.1089 S23: 0.1527 REMARK 3 S31: 0.7640 S32: -0.0554 S33: -0.2551 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JPH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000078339. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9574 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : K-B PAIR OF BIOMORPH MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36786 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 17.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, SODIUM CITRATE, PH 5.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.77900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 21 REMARK 465 ARG A 22 REMARK 465 LYS A 23 REMARK 465 ASN A 24 REMARK 465 ARG A 25 REMARK 465 PRO A 26 REMARK 465 ALA A 27 REMARK 465 GLY A 28 REMARK 465 ALA A 29 REMARK 465 ILE A 30 REMARK 465 PRO A 31 REMARK 465 SER A 32 REMARK 465 PRO A 33 REMARK 465 TYR A 34 REMARK 465 LYS A 35 REMARK 465 ASP A 36 REMARK 465 GLY A 37 REMARK 465 SER A 38 REMARK 465 SER A 39 REMARK 465 ASN A 40 REMARK 465 ASN A 41 REMARK 465 SER A 42 REMARK 465 GLU A 43 REMARK 465 ARG A 44 REMARK 465 TRP A 45 REMARK 465 ASN A 161 REMARK 465 LEU A 162 REMARK 465 SER A 163 REMARK 465 ASP A 164 REMARK 465 SER A 165 REMARK 465 ASP A 166 REMARK 465 LYS A 167 REMARK 465 GLN A 168 REMARK 465 MET B 21 REMARK 465 ARG B 22 REMARK 465 LYS B 23 REMARK 465 ASN B 24 REMARK 465 ARG B 25 REMARK 465 PRO B 26 REMARK 465 ALA B 27 REMARK 465 GLY B 28 REMARK 465 ALA B 29 REMARK 465 ILE B 30 REMARK 465 PRO B 31 REMARK 465 SER B 32 REMARK 465 PRO B 33 REMARK 465 TYR B 34 REMARK 465 LYS B 35 REMARK 465 ASP B 36 REMARK 465 GLY B 37 REMARK 465 SER B 38 REMARK 465 SER B 39 REMARK 465 ASN B 40 REMARK 465 ASN B 41 REMARK 465 SER B 42 REMARK 465 GLU B 43 REMARK 465 ARG B 44 REMARK 465 TRP B 45 REMARK 465 HIS B 46 REMARK 465 HIS B 47 REMARK 465 GLN B 48 REMARK 465 ILE B 49 REMARK 465 ASN B 161 REMARK 465 LEU B 162 REMARK 465 SER B 163 REMARK 465 ASP B 164 REMARK 465 SER B 165 REMARK 465 ASP B 166 REMARK 465 LYS B 167 REMARK 465 GLN B 168 REMARK 465 MET C 21 REMARK 465 ARG C 22 REMARK 465 LYS C 23 REMARK 465 ASN C 24 REMARK 465 ARG C 25 REMARK 465 PRO C 26 REMARK 465 ALA C 27 REMARK 465 GLY C 28 REMARK 465 ALA C 29 REMARK 465 ILE C 30 REMARK 465 PRO C 31 REMARK 465 SER C 32 REMARK 465 PRO C 33 REMARK 465 TYR C 34 REMARK 465 LYS C 35 REMARK 465 ASP C 36 REMARK 465 GLY C 37 REMARK 465 SER C 38 REMARK 465 SER C 39 REMARK 465 ASN C 40 REMARK 465 ASN C 41 REMARK 465 SER C 42 REMARK 465 GLU C 43 REMARK 465 ARG C 44 REMARK 465 TRP C 45 REMARK 465 HIS C 46 REMARK 465 HIS C 47 REMARK 465 GLN C 48 REMARK 465 ILE C 49 REMARK 465 LYS C 50 REMARK 465 GLU C 51 REMARK 465 VAL C 52 REMARK 465 LEU C 53 REMARK 465 ALA C 54 REMARK 465 SER C 55 REMARK 465 SER C 56 REMARK 465 GLN C 57 REMARK 465 GLU C 58 REMARK 465 ALA C 59 REMARK 465 ASN C 161 REMARK 465 LEU C 162 REMARK 465 SER C 163 REMARK 465 ASP C 164 REMARK 465 SER C 165 REMARK 465 ASP C 166 REMARK 465 LYS C 167 REMARK 465 GLN C 168 REMARK 465 MET D 21 REMARK 465 ARG D 22 REMARK 465 LYS D 23 REMARK 465 ASN D 24 REMARK 465 ARG D 25 REMARK 465 PRO D 26 REMARK 465 ALA D 27 REMARK 465 GLY D 28 REMARK 465 ALA D 29 REMARK 465 ILE D 30 REMARK 465 PRO D 31 REMARK 465 SER D 32 REMARK 465 PRO D 33 REMARK 465 TYR D 34 REMARK 465 LYS D 35 REMARK 465 ASP D 36 REMARK 465 GLY D 37 REMARK 465 SER D 38 REMARK 465 SER D 39 REMARK 465 ASN D 40 REMARK 465 ASN D 41 REMARK 465 SER D 42 REMARK 465 GLU D 43 REMARK 465 ARG D 44 REMARK 465 TRP D 45 REMARK 465 HIS D 46 REMARK 465 HIS D 47 REMARK 465 GLN D 48 REMARK 465 ILE D 49 REMARK 465 ASN D 161 REMARK 465 LEU D 162 REMARK 465 SER D 163 REMARK 465 ASP D 164 REMARK 465 SER D 165 REMARK 465 ASP D 166 REMARK 465 LYS D 167 REMARK 465 GLN D 168 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 112 CG CD CE NZ REMARK 470 GLU A 113 CG CD OE1 OE2 REMARK 470 LYS A 153 CG CD CE NZ REMARK 470 LYS B 111 CG CD CE NZ REMARK 470 LYS B 112 CG CD CE NZ REMARK 470 GLU B 113 CG CD OE1 OE2 REMARK 470 VAL B 160 CG1 CG2 REMARK 470 LEU C 60 CG CD1 CD2 REMARK 470 ARG C 65 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 66 CG CD CE NZ REMARK 470 ARG C 108 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 111 CG CD CE NZ REMARK 470 LYS C 112 CG CD CE NZ REMARK 470 GLU C 113 CG CD OE1 OE2 REMARK 470 GLN D 57 CG CD OE1 NE2 REMARK 470 LEU D 60 CG CD1 CD2 REMARK 470 GLU D 64 CD OE1 OE2 REMARK 470 GLU D 85 CG CD OE1 OE2 REMARK 470 ARG D 88 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 112 CG CD CE NZ REMARK 470 ARG D 127 CG CD NE CZ NH1 NH2 REMARK 470 VAL D 160 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 47 49.28 -102.34 REMARK 500 GLU A 113 148.78 175.96 REMARK 500 PRO A 143 40.28 -78.23 REMARK 500 PRO B 143 39.95 -79.40 REMARK 500 TYR C 67 -61.60 -91.34 REMARK 500 LYS C 112 -79.29 63.10 REMARK 500 ASP C 115 81.90 35.01 REMARK 500 PRO C 143 39.56 -77.09 REMARK 500 LEU D 68 54.49 -111.74 REMARK 500 HIS D 109 107.39 -42.69 REMARK 500 LYS D 111 -101.16 67.65 REMARK 500 PHE D 144 171.25 -45.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 GSH B 205 REMARK 610 GSH C 204 REMARK 610 GSH D 203 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSH A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSH B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSH C 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSH D 203 DBREF 4JPH A 22 168 UNP O88273 GREM2_MOUSE 22 168 DBREF 4JPH B 22 168 UNP O88273 GREM2_MOUSE 22 168 DBREF 4JPH C 22 168 UNP O88273 GREM2_MOUSE 22 168 DBREF 4JPH D 22 168 UNP O88273 GREM2_MOUSE 22 168 SEQADV 4JPH MET A 21 UNP O88273 INITIATING METHIONINE SEQADV 4JPH MET B 21 UNP O88273 INITIATING METHIONINE SEQADV 4JPH MET C 21 UNP O88273 INITIATING METHIONINE SEQADV 4JPH MET D 21 UNP O88273 INITIATING METHIONINE SEQRES 1 A 148 MET ARG LYS ASN ARG PRO ALA GLY ALA ILE PRO SER PRO SEQRES 2 A 148 TYR LYS ASP GLY SER SER ASN ASN SER GLU ARG TRP HIS SEQRES 3 A 148 HIS GLN ILE LYS GLU VAL LEU ALA SER SER GLN GLU ALA SEQRES 4 A 148 LEU VAL VAL THR GLU ARG LYS TYR LEU LYS SER ASP TRP SEQRES 5 A 148 CYS LYS THR GLN PRO LEU ARG GLN THR VAL SER GLU GLU SEQRES 6 A 148 GLY CYS ARG SER ARG THR ILE LEU ASN ARG PHE CYS TYR SEQRES 7 A 148 GLY GLN CYS ASN SER PHE TYR ILE PRO ARG HIS VAL LYS SEQRES 8 A 148 LYS GLU GLU ASP SER PHE GLN SER CYS ALA PHE CYS LYS SEQRES 9 A 148 PRO GLN ARG VAL THR SER VAL ILE VAL GLU LEU GLU CYS SEQRES 10 A 148 PRO GLY LEU ASP PRO PRO PHE ARG ILE LYS LYS ILE GLN SEQRES 11 A 148 LYS VAL LYS HIS CYS ARG CYS MET SER VAL ASN LEU SER SEQRES 12 A 148 ASP SER ASP LYS GLN SEQRES 1 B 148 MET ARG LYS ASN ARG PRO ALA GLY ALA ILE PRO SER PRO SEQRES 2 B 148 TYR LYS ASP GLY SER SER ASN ASN SER GLU ARG TRP HIS SEQRES 3 B 148 HIS GLN ILE LYS GLU VAL LEU ALA SER SER GLN GLU ALA SEQRES 4 B 148 LEU VAL VAL THR GLU ARG LYS TYR LEU LYS SER ASP TRP SEQRES 5 B 148 CYS LYS THR GLN PRO LEU ARG GLN THR VAL SER GLU GLU SEQRES 6 B 148 GLY CYS ARG SER ARG THR ILE LEU ASN ARG PHE CYS TYR SEQRES 7 B 148 GLY GLN CYS ASN SER PHE TYR ILE PRO ARG HIS VAL LYS SEQRES 8 B 148 LYS GLU GLU ASP SER PHE GLN SER CYS ALA PHE CYS LYS SEQRES 9 B 148 PRO GLN ARG VAL THR SER VAL ILE VAL GLU LEU GLU CYS SEQRES 10 B 148 PRO GLY LEU ASP PRO PRO PHE ARG ILE LYS LYS ILE GLN SEQRES 11 B 148 LYS VAL LYS HIS CYS ARG CYS MET SER VAL ASN LEU SER SEQRES 12 B 148 ASP SER ASP LYS GLN SEQRES 1 C 148 MET ARG LYS ASN ARG PRO ALA GLY ALA ILE PRO SER PRO SEQRES 2 C 148 TYR LYS ASP GLY SER SER ASN ASN SER GLU ARG TRP HIS SEQRES 3 C 148 HIS GLN ILE LYS GLU VAL LEU ALA SER SER GLN GLU ALA SEQRES 4 C 148 LEU VAL VAL THR GLU ARG LYS TYR LEU LYS SER ASP TRP SEQRES 5 C 148 CYS LYS THR GLN PRO LEU ARG GLN THR VAL SER GLU GLU SEQRES 6 C 148 GLY CYS ARG SER ARG THR ILE LEU ASN ARG PHE CYS TYR SEQRES 7 C 148 GLY GLN CYS ASN SER PHE TYR ILE PRO ARG HIS VAL LYS SEQRES 8 C 148 LYS GLU GLU ASP SER PHE GLN SER CYS ALA PHE CYS LYS SEQRES 9 C 148 PRO GLN ARG VAL THR SER VAL ILE VAL GLU LEU GLU CYS SEQRES 10 C 148 PRO GLY LEU ASP PRO PRO PHE ARG ILE LYS LYS ILE GLN SEQRES 11 C 148 LYS VAL LYS HIS CYS ARG CYS MET SER VAL ASN LEU SER SEQRES 12 C 148 ASP SER ASP LYS GLN SEQRES 1 D 148 MET ARG LYS ASN ARG PRO ALA GLY ALA ILE PRO SER PRO SEQRES 2 D 148 TYR LYS ASP GLY SER SER ASN ASN SER GLU ARG TRP HIS SEQRES 3 D 148 HIS GLN ILE LYS GLU VAL LEU ALA SER SER GLN GLU ALA SEQRES 4 D 148 LEU VAL VAL THR GLU ARG LYS TYR LEU LYS SER ASP TRP SEQRES 5 D 148 CYS LYS THR GLN PRO LEU ARG GLN THR VAL SER GLU GLU SEQRES 6 D 148 GLY CYS ARG SER ARG THR ILE LEU ASN ARG PHE CYS TYR SEQRES 7 D 148 GLY GLN CYS ASN SER PHE TYR ILE PRO ARG HIS VAL LYS SEQRES 8 D 148 LYS GLU GLU ASP SER PHE GLN SER CYS ALA PHE CYS LYS SEQRES 9 D 148 PRO GLN ARG VAL THR SER VAL ILE VAL GLU LEU GLU CYS SEQRES 10 D 148 PRO GLY LEU ASP PRO PRO PHE ARG ILE LYS LYS ILE GLN SEQRES 11 D 148 LYS VAL LYS HIS CYS ARG CYS MET SER VAL ASN LEU SER SEQRES 12 D 148 ASP SER ASP LYS GLN HET GOL A 201 14 HET GOL A 202 14 HET GOL A 203 14 HET GOL A 204 14 HET GOL A 205 14 HET GSH A 206 20 HET CIT B 201 18 HET GOL B 202 14 HET GOL B 203 14 HET GOL B 204 14 HET GSH B 205 14 HET GOL C 201 14 HET GOL C 202 14 HET GOL C 203 14 HET GSH C 204 8 HET CIT D 201 18 HET GOL D 202 14 HET GSH D 203 6 HETNAM GOL GLYCEROL HETNAM GSH GLUTATHIONE HETNAM CIT CITRIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL 12(C3 H8 O3) FORMUL 10 GSH 4(C10 H17 N3 O6 S) FORMUL 11 CIT 2(C6 H8 O7) FORMUL 23 HOH *113(H2 O) HELIX 1 1 GLN A 48 ALA A 54 1 7 HELIX 2 2 SER A 55 THR A 63 5 9 HELIX 3 3 GLU A 64 LYS A 69 1 6 HELIX 4 4 SER B 55 LYS B 66 1 12 HELIX 5 5 GLU C 64 LYS C 69 1 6 HELIX 6 6 SER D 56 ARG D 65 1 10 SHEET 1 A 4 TRP A 72 VAL A 82 0 SHEET 2 A 4 ARG A 90 PRO A 107 -1 O ARG A 90 N VAL A 82 SHEET 3 A 4 ARG B 90 ILE B 106 -1 O TYR B 105 N CYS A 97 SHEET 4 A 4 TRP B 72 VAL B 82 -1 N VAL B 82 O ARG B 90 SHEET 1 B 4 SER A 116 CYS A 120 0 SHEET 2 B 4 ARG A 90 PRO A 107 -1 N ILE A 106 O PHE A 117 SHEET 3 B 4 ARG B 90 ILE B 106 -1 O TYR B 105 N CYS A 97 SHEET 4 B 4 PHE B 117 CYS B 120 -1 O PHE B 117 N ILE B 106 SHEET 1 C 2 PHE A 122 GLU A 136 0 SHEET 2 C 2 PHE A 144 MET A 158 -1 O HIS A 154 N GLN A 126 SHEET 1 D 2 PHE B 122 GLU B 136 0 SHEET 2 D 2 PHE B 144 MET B 158 -1 O HIS B 154 N GLN B 126 SHEET 1 E 4 TRP C 72 VAL C 82 0 SHEET 2 E 4 ARG C 90 ILE C 106 -1 O ARG C 90 N VAL C 82 SHEET 3 E 4 ARG D 90 PRO D 107 -1 O TYR D 105 N CYS C 97 SHEET 4 E 4 TRP D 72 VAL D 82 -1 N LEU D 78 O ASN D 94 SHEET 1 F 6 PHE C 144 SER C 159 0 SHEET 2 F 6 PHE C 117 GLU C 136 -1 N THR C 129 O LYS C 151 SHEET 3 F 6 ARG C 90 ILE C 106 -1 N ILE C 106 O PHE C 117 SHEET 4 F 6 ARG D 90 PRO D 107 -1 O TYR D 105 N CYS C 97 SHEET 5 F 6 SER D 116 LEU D 135 -1 O PHE D 117 N ILE D 106 SHEET 6 F 6 ARG D 145 SER D 159 -1 O LYS D 151 N THR D 129 SSBOND 1 CYS A 73 CYS A 123 1555 1555 2.02 SSBOND 2 CYS A 87 CYS A 137 1555 1555 2.05 SSBOND 3 CYS A 97 CYS A 155 1555 1555 2.03 SSBOND 4 CYS A 101 CYS A 157 1555 1555 2.05 SSBOND 5 CYS B 73 CYS B 123 1555 1555 2.02 SSBOND 6 CYS B 87 CYS B 137 1555 1555 2.05 SSBOND 7 CYS B 97 CYS B 155 1555 1555 2.04 SSBOND 8 CYS B 101 CYS B 157 1555 1555 2.05 SSBOND 9 CYS C 73 CYS C 123 1555 1555 2.05 SSBOND 10 CYS C 87 CYS C 137 1555 1555 2.04 SSBOND 11 CYS C 97 CYS C 155 1555 1555 2.03 SSBOND 12 CYS C 101 CYS C 157 1555 1555 2.04 SSBOND 13 CYS D 73 CYS D 123 1555 1555 2.03 SSBOND 14 CYS D 87 CYS D 137 1555 1555 2.04 SSBOND 15 CYS D 97 CYS D 155 1555 1555 2.04 SSBOND 16 CYS D 101 CYS D 157 1555 1555 2.04 LINK SG CYS A 120 SG2 GSH A 206 1555 1555 2.08 LINK SG CYS C 120 SG2 GSH C 204 1555 1555 2.08 LINK SG CYS B 120 SG2 GSH B 205 1555 1555 2.08 LINK SG CYS D 120 SG2 GSH D 203 1555 1555 2.12 CISPEP 1 ASP A 141 PRO A 142 0 -3.68 CISPEP 2 LYS B 111 LYS B 112 0 6.04 CISPEP 3 ASP B 141 PRO B 142 0 -3.45 CISPEP 4 ASP C 141 PRO C 142 0 -2.11 CISPEP 5 ASP D 141 PRO D 142 0 10.41 CISPEP 6 PRO D 142 PRO D 143 0 2.68 SITE 1 AC1 2 GLU A 58 ARG B 79 SITE 1 AC2 1 ILE A 49 SITE 1 AC3 4 ARG A 108 HIS A 109 LYS A 111 ASP A 115 SITE 1 AC4 2 CYS A 157 MET A 158 SITE 1 AC5 3 GLU A 84 ARG A 145 SER B 89 SITE 1 AC6 8 TYR A 105 GLN A 118 CYS A 120 VAL A 160 SITE 2 AC6 8 PHE B 122 LYS B 124 PRO B 125 GSH B 205 SITE 1 AC7 8 ARG B 95 ARG B 127 LYS B 153 ARG D 90 SITE 2 AC7 8 ILE D 132 HOH D 301 HOH D 304 HOH D 310 SITE 1 AC8 3 HIS B 154 THR D 129 SER D 130 SITE 1 AC9 2 GLU B 64 GLN B 118 SITE 1 BC1 1 PHE B 144 SITE 1 BC2 5 PHE A 122 LYS A 124 GSH A 206 GLN B 118 SITE 2 BC2 5 CYS B 120 SITE 1 BC3 3 HIS C 154 ARG C 156 HOH C 312 SITE 1 BC4 2 ARG C 95 LYS C 153 SITE 1 BC5 5 GLU B 85 GLY B 86 ARG C 79 LEU C 93 SITE 2 BC5 5 HOH C 302 SITE 1 BC6 2 GLN C 118 CYS C 120 SITE 1 BC7 5 GLN B 126 ARG B 127 ARG B 156 LYS D 151 SITE 2 BC7 5 LYS D 153 SITE 1 BC8 4 ARG B 79 THR B 91 PRO D 142 PHE D 144 SITE 1 BC9 3 PHE C 122 GLN D 118 CYS D 120 CRYST1 73.312 65.558 85.077 90.00 105.50 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013640 0.000000 0.003783 0.00000 SCALE2 0.000000 0.015254 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012198 0.00000