HEADER LIPID BINDING PROTEIN 21-MAR-13 4JRB TITLE STRUCTURE OF COCKROACH ALLERGEN BLA G 1 TANDEM REPEAT AS A EGFP FUSION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GREEN FLUORESCENT PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEQUOREA VICTORIA, BLATTELLA GERMANICA; SOURCE 3 ORGANISM_COMMON: JELLYFISH, GERMAN COCKROACH; SOURCE 4 ORGANISM_TAXID: 6100, 6973; SOURCE 5 GENE: GFP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PEGFPX KEYWDS ALLERGEN, ASTHMA, NEW FOLD, PROPOSED LIPID BINDING PROTEIN, LIPID KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.A.MUELLER,L.C.PEDERSEN,F.B.LIH,J.GLESNER,A.F.MOON,M.D.CHAPMAN, AUTHOR 2 K.TOMER,R.E.LONDON REVDAT 8 16-OCT-24 4JRB 1 REMARK REVDAT 7 06-DEC-23 4JRB 1 REMARK REVDAT 6 20-SEP-23 4JRB 1 REMARK LINK REVDAT 5 21-JUN-17 4JRB 1 DBREF REVDAT 4 25-DEC-13 4JRB 1 JRNL REVDAT 3 20-NOV-13 4JRB 1 JRNL REVDAT 2 21-AUG-13 4JRB 1 JRNL REVDAT 1 24-JUL-13 4JRB 0 JRNL AUTH G.A.MUELLER,L.C.PEDERSEN,F.B.LIH,J.GLESNER,A.F.MOON, JRNL AUTH 2 M.D.CHAPMAN,K.B.TOMER,R.E.LONDON,A.POMES JRNL TITL THE NOVEL STRUCTURE OF THE COCKROACH ALLERGEN BLA G 1 HAS JRNL TITL 2 IMPLICATIONS FOR ALLERGENICITY AND EXPOSURE ASSESSMENT. JRNL REF J.ALLERGY CLIN.IMMUNOL. V. 132 1420 2013 JRNL REFN ISSN 0091-6749 JRNL PMID 23915714 JRNL DOI 10.1016/J.JACI.2013.06.014 REMARK 2 REMARK 2 RESOLUTION. 2.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 22483 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1130 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.1890 - 4.8172 0.99 2946 156 0.1787 0.2095 REMARK 3 2 4.8172 - 3.8279 1.00 2837 151 0.1656 0.1999 REMARK 3 3 3.8279 - 3.3453 1.00 2817 148 0.2002 0.2848 REMARK 3 4 3.3453 - 3.0400 0.99 2784 146 0.2104 0.2565 REMARK 3 5 3.0400 - 2.8224 0.96 2683 139 0.2342 0.3046 REMARK 3 6 2.8224 - 2.6562 0.94 2651 139 0.2471 0.3250 REMARK 3 7 2.6562 - 2.5233 0.90 2508 134 0.2592 0.2767 REMARK 3 8 2.5233 - 2.4135 0.77 2127 117 0.2925 0.3831 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 43.53 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.47820 REMARK 3 B22 (A**2) : 7.72640 REMARK 3 B33 (A**2) : -7.24820 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3258 REMARK 3 ANGLE : 1.080 4399 REMARK 3 CHIRALITY : 0.068 492 REMARK 3 PLANARITY : 0.005 570 REMARK 3 DIHEDRAL : 16.745 1213 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 0:73) REMARK 3 ORIGIN FOR THE GROUP (A): -38.7685 -18.8382 -36.4261 REMARK 3 T TENSOR REMARK 3 T11: 0.3794 T22: 0.2403 REMARK 3 T33: 0.3720 T12: -0.0329 REMARK 3 T13: -0.0618 T23: 0.1018 REMARK 3 L TENSOR REMARK 3 L11: 2.1199 L22: 1.2452 REMARK 3 L33: 1.6499 L12: 0.0679 REMARK 3 L13: -0.9821 L23: -1.3797 REMARK 3 S TENSOR REMARK 3 S11: -0.0123 S12: 0.4975 S13: 0.4592 REMARK 3 S21: -0.0404 S22: -0.0345 S23: -0.0716 REMARK 3 S31: -0.7192 S32: 0.0115 S33: -0.1508 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 74:231) REMARK 3 ORIGIN FOR THE GROUP (A): -35.5088 -26.9628 -33.8521 REMARK 3 T TENSOR REMARK 3 T11: 0.2421 T22: 0.2817 REMARK 3 T33: 0.2246 T12: -0.0630 REMARK 3 T13: -0.0215 T23: 0.0638 REMARK 3 L TENSOR REMARK 3 L11: 1.7564 L22: 1.1121 REMARK 3 L33: 3.3956 L12: -0.3355 REMARK 3 L13: -0.1515 L23: -0.5439 REMARK 3 S TENSOR REMARK 3 S11: -0.1062 S12: 0.1901 S13: 0.0504 REMARK 3 S21: -0.0057 S22: -0.0808 S23: -0.0812 REMARK 3 S31: -0.1373 S32: 0.2999 S33: 0.0829 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 232:1102) REMARK 3 ORIGIN FOR THE GROUP (A): -24.3405 -10.1039 11.3912 REMARK 3 T TENSOR REMARK 3 T11: 0.4224 T22: 0.3458 REMARK 3 T33: 0.6586 T12: 0.0164 REMARK 3 T13: -0.0629 T23: 0.0517 REMARK 3 L TENSOR REMARK 3 L11: 3.4999 L22: 0.9046 REMARK 3 L33: 0.4197 L12: -1.0133 REMARK 3 L13: -0.9365 L23: -0.0630 REMARK 3 S TENSOR REMARK 3 S11: 0.0734 S12: 0.9197 S13: 1.2966 REMARK 3 S21: -0.0643 S22: 0.0291 S23: -0.1130 REMARK 3 S31: -0.3485 S32: -0.0771 S33: -0.0233 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 1103:1113) REMARK 3 ORIGIN FOR THE GROUP (A): -19.9357 -6.5256 5.9219 REMARK 3 T TENSOR REMARK 3 T11: 1.2551 T22: 0.8511 REMARK 3 T33: 1.0863 T12: 0.0629 REMARK 3 T13: -0.0488 T23: 0.4727 REMARK 3 L TENSOR REMARK 3 L11: 2.7133 L22: 0.8661 REMARK 3 L33: 4.0804 L12: 1.5235 REMARK 3 L13: 0.0871 L23: 0.2638 REMARK 3 S TENSOR REMARK 3 S11: -0.3910 S12: 0.3701 S13: 1.0822 REMARK 3 S21: 0.3715 S22: -0.3102 S23: 0.3464 REMARK 3 S31: -1.2735 S32: 0.3868 S33: 0.1500 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 1129:1216) REMARK 3 ORIGIN FOR THE GROUP (A): -25.2494 -18.7195 18.4927 REMARK 3 T TENSOR REMARK 3 T11: 0.4460 T22: 0.3843 REMARK 3 T33: 0.3225 T12: -0.0087 REMARK 3 T13: -0.0844 T23: -0.0746 REMARK 3 L TENSOR REMARK 3 L11: 2.4997 L22: 1.2652 REMARK 3 L33: 0.4244 L12: -0.8011 REMARK 3 L13: 0.2743 L23: 0.3341 REMARK 3 S TENSOR REMARK 3 S11: -0.1098 S12: -0.1177 S13: 0.0509 REMARK 3 S21: 0.4849 S22: 0.0767 S23: -0.1593 REMARK 3 S31: 0.3338 S32: -0.0875 S33: 0.0067 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JRB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000078405. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-BM-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI (220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.45800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: 3AI4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS, 10% PROPANOL, 20% PEG4K, REMARK 280 PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.73250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.73250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.88400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.96000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.88400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.96000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 46.73250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.88400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 70.96000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 46.73250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.88400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 70.96000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1401 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 ASP A 1114 REMARK 465 LEU A 1115 REMARK 465 LEU A 1116 REMARK 465 GLY A 1117 REMARK 465 ILE A 1118 REMARK 465 PRO A 1119 REMARK 465 HIS A 1120 REMARK 465 ILE A 1121 REMARK 465 PRO A 1122 REMARK 465 VAL A 1123 REMARK 465 SER A 1124 REMARK 465 GLY A 1125 REMARK 465 ARG A 1126 REMARK 465 LYS A 1127 REMARK 465 TYR A 1128 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 GLU A 6 CG CD OE1 OE2 REMARK 470 LYS A 156 CG CD CE NZ REMARK 470 GLN A 157 CD OE1 NE2 REMARK 470 LYS A 158 CD CE NZ REMARK 470 LYS A 214 CG CD CE NZ REMARK 470 GLU A1079 CG CD OE1 OE2 REMARK 470 ASN A1110 CG OD1 ND2 REMARK 470 ILE A1112 CG1 CG2 CD1 REMARK 470 HIS A1129 ND1 CD2 CE1 NE2 REMARK 470 ARG A1132 NE CZ NH1 NH2 REMARK 470 GLU A1150 CD OE1 OE2 REMARK 470 LYS A1153 CG CD CE NZ REMARK 470 GLU A1158 CG CD OE1 OE2 REMARK 470 LYS A1197 CE NZ REMARK 470 LYS A1201 CE NZ REMARK 470 ARG A1213 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A1105 -60.80 -97.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 THE LIGAND DENOTED ADS D12 IS AN UNKNOWN FATTY ACID, WITH THE REMARK 600 CLOSEST MATCH ON OBSERVED ATOMS TO DODECANE. THE LIGAND DENOTED AS REMARK 600 PGT IS AN UNKNOWN PHOSPHOLIPID. OTHER STUDIES SUGGEST IT IS LIKELY REMARK 600 A PHOSPHATIDYL GLYCEROL FROM BACTERIA REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PGT A 1303 REMARK 610 D12 A 1304 REMARK 610 D12 A 1305 REMARK 610 D12 A 1307 REMARK 610 D12 A 1308 REMARK 610 D12 A 1309 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGT A 1303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE D12 A 1304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE D12 A 1305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE D12 A 1306 DBREF 4JRB A 1 229 UNP P42212 GFP_AEQVI 1 229 DBREF 4JRB A 1034 1216 UNP Q9UAM5 Q9UAM5_BLAGE 34 216 SEQADV 4JRB GLY A -2 UNP P42212 EXPRESSION TAG SEQADV 4JRB SER A -1 UNP P42212 EXPRESSION TAG SEQADV 4JRB HIS A 0 UNP P42212 EXPRESSION TAG SEQADV 4JRB A UNP P42212 SER 65 DELETION SEQADV 4JRB A UNP P42212 TYR 66 DELETION SEQADV 4JRB CR2 A 66 UNP P42212 GLY 67 CHROMOPHORE SEQADV 4JRB ALA A 72 UNP P42212 SER 72 CONFLICT SEQADV 4JRB ALA A 230 UNP P42212 LINKER SEQADV 4JRB ALA A 231 UNP P42212 LINKER SEQADV 4JRB ALA A 232 UNP P42212 LINKER SEQRES 1 A 416 GLY SER HIS MET SER LYS GLY GLU GLU LEU PHE THR GLY SEQRES 2 A 416 VAL VAL PRO ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN SEQRES 3 A 416 GLY HIS LYS PHE SER VAL SER GLY GLU GLY GLU GLY ASP SEQRES 4 A 416 ALA THR TYR GLY LYS LEU THR LEU LYS PHE ILE CYS THR SEQRES 5 A 416 THR GLY LYS LEU PRO VAL PRO TRP PRO THR LEU VAL THR SEQRES 6 A 416 THR PHE CR2 VAL GLN CYS PHE ALA ARG TYR PRO ASP HIS SEQRES 7 A 416 MET LYS GLN HIS ASP PHE PHE LYS SER ALA MET PRO GLU SEQRES 8 A 416 GLY TYR VAL GLN GLU ARG THR ILE PHE PHE LYS ASP ASP SEQRES 9 A 416 GLY ASN TYR LYS THR ARG ALA GLU VAL LYS PHE GLU GLY SEQRES 10 A 416 ASP THR LEU VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP SEQRES 11 A 416 PHE LYS GLU ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU SEQRES 12 A 416 TYR ASN TYR ASN SER HIS ASN VAL TYR ILE MET ALA ASP SEQRES 13 A 416 LYS GLN LYS ASN GLY ILE LYS VAL ASN PHE LYS ILE ARG SEQRES 14 A 416 HIS ASN ILE GLU ASP GLY SER VAL GLN LEU ALA ASP HIS SEQRES 15 A 416 TYR GLN GLN ASN THR PRO ILE GLY ASP GLY PRO VAL LEU SEQRES 16 A 416 LEU PRO ASP ASN HIS TYR LEU SER THR GLN SER ALA LEU SEQRES 17 A 416 SER LYS ASP PRO ASN GLU LYS ARG ASP HIS MET VAL LEU SEQRES 18 A 416 LEU GLU PHE VAL THR ALA ALA GLY ILE ALA ALA ALA ARG SEQRES 19 A 416 ASN LEU GLN ASP ASP LEU GLN ASP PHE LEU ALA LEU ILE SEQRES 20 A 416 PRO VAL ASP GLN ILE ILE ALA ILE ALA THR ASP TYR LEU SEQRES 21 A 416 ALA ASN ASP ALA GLU VAL GLN ALA ALA VAL ALA TYR LEU SEQRES 22 A 416 GLN SER ASP GLU PHE GLU THR ILE VAL VAL ALA LEU ASP SEQRES 23 A 416 ALA LEU PRO GLU LEU GLN ASN PHE LEU ASN PHE LEU GLU SEQRES 24 A 416 ALA ASN GLY LEU ASN ALA ILE ASP PHE LEU ASN GLY ILE SEQRES 25 A 416 HIS ASP LEU LEU GLY ILE PRO HIS ILE PRO VAL SER GLY SEQRES 26 A 416 ARG LYS TYR HIS ILE ARG ARG GLY VAL GLY ILE THR GLY SEQRES 27 A 416 LEU ILE ASP ASP VAL LEU ALA ILE LEU PRO ILE GLU ASP SEQRES 28 A 416 LEU LYS ALA LEU PHE ASN GLU LYS LEU GLU THR SER PRO SEQRES 29 A 416 ASP PHE LEU ALA LEU TYR ASN ALA ILE ARG SER PRO GLU SEQRES 30 A 416 PHE GLN SER ILE VAL GLN THR LEU ASN ALA MET PRO GLU SEQRES 31 A 416 TYR GLN ASN LEU LEU GLN LYS LEU ARG GLU LYS GLY VAL SEQRES 32 A 416 ASP VAL ASP LYS ILE ILE GLU LEU ILE ARG ALA LEU PHE MODRES 4JRB CR2 A 66 GLY CHROMOPHORE HET CR2 A 66 19 HET CL A1301 1 HET CL A1302 1 HET PGT A1303 41 HET D12 A1304 8 HET D12 A1305 7 HET D12 A1306 12 HET D12 A1307 8 HET D12 A1308 6 HET D12 A1309 9 HETNAM CR2 {(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]- HETNAM 2 CR2 5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID HETNAM CL CHLORIDE ION HETNAM PGT (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY) HETNAM 2 PGT PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE HETNAM D12 DODECANE HETSYN CR2 CHROMOPHORE (GLY-TYR-GLY) HETSYN PGT PHOSPHATIDYLGLYCEROL; 1-PALMITOYL-2-OLEOYL-SN-GLYCERO- HETSYN 2 PGT 3-[PHOSPHO-RAC-(1-GLYCEROL)](SODIUM SALT) FORMUL 1 CR2 C13 H13 N3 O4 FORMUL 2 CL 2(CL 1-) FORMUL 4 PGT C40 H79 O10 P FORMUL 5 D12 6(C12 H26) FORMUL 11 HOH *100(H2 O) HELIX 1 1 LYS A 3 THR A 9 5 7 HELIX 2 2 PRO A 56 VAL A 61 5 6 HELIX 3 3 VAL A 68 ALA A 72 5 5 HELIX 4 4 PRO A 75 HIS A 81 5 7 HELIX 5 5 ASP A 82 ALA A 87 1 6 HELIX 6 6 ASN A 1035 ILE A 1047 1 13 HELIX 7 7 PRO A 1048 ASP A 1063 1 16 HELIX 8 8 ASP A 1063 GLN A 1074 1 12 HELIX 9 9 SER A 1075 LEU A 1088 1 14 HELIX 10 10 LEU A 1088 ASN A 1101 1 14 HELIX 11 11 ASN A 1104 GLY A 1111 1 8 HELIX 12 12 VAL A 1134 LEU A 1147 1 14 HELIX 13 13 PRO A 1148 SER A 1163 1 16 HELIX 14 14 SER A 1163 SER A 1175 1 13 HELIX 15 15 SER A 1175 ALA A 1187 1 13 HELIX 16 16 MET A 1188 GLU A 1200 1 13 HELIX 17 17 ASP A 1204 PHE A 1216 1 13 SHEET 1 A12 VAL A 12 VAL A 22 0 SHEET 2 A12 HIS A 25 ASP A 36 -1 O VAL A 29 N LEU A 18 SHEET 3 A12 LYS A 41 CYS A 48 -1 O LYS A 41 N ASP A 36 SHEET 4 A12 HIS A 217 ALA A 227 -1 O LEU A 220 N LEU A 44 SHEET 5 A12 HIS A 199 SER A 208 -1 N SER A 202 O THR A 225 SHEET 6 A12 HIS A 148 ASP A 155 -1 N ILE A 152 O HIS A 199 SHEET 7 A12 GLY A 160 ASN A 170 -1 O GLY A 160 N ASP A 155 SHEET 8 A12 VAL A 176 PRO A 187 -1 O HIS A 181 N PHE A 165 SHEET 9 A12 TYR A 92 PHE A 100 -1 N VAL A 93 O THR A 186 SHEET 10 A12 ASN A 105 GLU A 115 -1 O TYR A 106 N ILE A 98 SHEET 11 A12 THR A 118 ILE A 128 -1 O VAL A 120 N LYS A 113 SHEET 12 A12 VAL A 12 VAL A 22 1 N ASP A 21 O GLY A 127 LINK C PHE A 64 N1 CR2 A 66 1555 1555 1.33 LINK C3 CR2 A 66 N VAL A 68 1555 1555 1.33 CISPEP 1 MET A 88 PRO A 89 0 -5.85 SITE 1 AC1 1 LYS A 107 SITE 1 AC2 5 ILE A1173 GLN A1179 VAL A1182 LEU A1185 SITE 2 AC2 5 ARG A1213 SITE 1 AC3 1 PHE A1156 SITE 1 AC4 2 LEU A1169 ILE A1173 SITE 1 AC5 3 LEU A1085 LEU A1091 TYR A1191 CRYST1 91.768 141.920 93.465 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010897 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007046 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010699 0.00000