HEADER LIPID BINDING PROTEIN 21-MAR-13 4JRB
TITLE STRUCTURE OF COCKROACH ALLERGEN BLA G 1 TANDEM REPEAT AS A EGFP FUSION
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: GREEN FLUORESCENT PROTEIN;
COMPND 3 CHAIN: A;
COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: AEQUOREA VICTORIA, BLATTELLA GERMANICA;
SOURCE 3 ORGANISM_COMMON: JELLYFISH, GERMAN COCKROACH;
SOURCE 4 ORGANISM_TAXID: 6100, 6973;
SOURCE 5 GENE: GFP;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3-RIL;
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PEGFPX
KEYWDS ALLERGEN, ASTHMA, NEW FOLD, PROPOSED LIPID BINDING PROTEIN, LIPID
KEYWDS 2 BINDING PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR G.A.MUELLER,L.C.PEDERSEN,F.B.LIH,J.GLESNER,A.F.MOON,M.D.CHAPMAN,
AUTHOR 2 K.TOMER,R.E.LONDON
REVDAT 8 16-OCT-24 4JRB 1 REMARK
REVDAT 7 06-DEC-23 4JRB 1 REMARK
REVDAT 6 20-SEP-23 4JRB 1 REMARK LINK
REVDAT 5 21-JUN-17 4JRB 1 DBREF
REVDAT 4 25-DEC-13 4JRB 1 JRNL
REVDAT 3 20-NOV-13 4JRB 1 JRNL
REVDAT 2 21-AUG-13 4JRB 1 JRNL
REVDAT 1 24-JUL-13 4JRB 0
JRNL AUTH G.A.MUELLER,L.C.PEDERSEN,F.B.LIH,J.GLESNER,A.F.MOON,
JRNL AUTH 2 M.D.CHAPMAN,K.B.TOMER,R.E.LONDON,A.POMES
JRNL TITL THE NOVEL STRUCTURE OF THE COCKROACH ALLERGEN BLA G 1 HAS
JRNL TITL 2 IMPLICATIONS FOR ALLERGENICITY AND EXPOSURE ASSESSMENT.
JRNL REF J.ALLERGY CLIN.IMMUNOL. V. 132 1420 2013
JRNL REFN ISSN 0091-6749
JRNL PMID 23915714
JRNL DOI 10.1016/J.JACI.2013.06.014
REMARK 2
REMARK 2 RESOLUTION. 2.41 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650)
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.41
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.19
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5
REMARK 3 NUMBER OF REFLECTIONS : 22483
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.200
REMARK 3 R VALUE (WORKING SET) : 0.198
REMARK 3 FREE R VALUE : 0.246
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030
REMARK 3 FREE R VALUE TEST SET COUNT : 1130
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 25.1890 - 4.8172 0.99 2946 156 0.1787 0.2095
REMARK 3 2 4.8172 - 3.8279 1.00 2837 151 0.1656 0.1999
REMARK 3 3 3.8279 - 3.3453 1.00 2817 148 0.2002 0.2848
REMARK 3 4 3.3453 - 3.0400 0.99 2784 146 0.2104 0.2565
REMARK 3 5 3.0400 - 2.8224 0.96 2683 139 0.2342 0.3046
REMARK 3 6 2.8224 - 2.6562 0.94 2651 139 0.2471 0.3250
REMARK 3 7 2.6562 - 2.5233 0.90 2508 134 0.2592 0.2767
REMARK 3 8 2.5233 - 2.4135 0.77 2127 117 0.2925 0.3831
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.20
REMARK 3 SHRINKAGE RADIUS : 0.95
REMARK 3 K_SOL : 0.31
REMARK 3 B_SOL : 43.53
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.800
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -0.47820
REMARK 3 B22 (A**2) : 7.72640
REMARK 3 B33 (A**2) : -7.24820
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.007 3258
REMARK 3 ANGLE : 1.080 4399
REMARK 3 CHIRALITY : 0.068 492
REMARK 3 PLANARITY : 0.005 570
REMARK 3 DIHEDRAL : 16.745 1213
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 5
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: (CHAIN A AND RESID 0:73)
REMARK 3 ORIGIN FOR THE GROUP (A): -38.7685 -18.8382 -36.4261
REMARK 3 T TENSOR
REMARK 3 T11: 0.3794 T22: 0.2403
REMARK 3 T33: 0.3720 T12: -0.0329
REMARK 3 T13: -0.0618 T23: 0.1018
REMARK 3 L TENSOR
REMARK 3 L11: 2.1199 L22: 1.2452
REMARK 3 L33: 1.6499 L12: 0.0679
REMARK 3 L13: -0.9821 L23: -1.3797
REMARK 3 S TENSOR
REMARK 3 S11: -0.0123 S12: 0.4975 S13: 0.4592
REMARK 3 S21: -0.0404 S22: -0.0345 S23: -0.0716
REMARK 3 S31: -0.7192 S32: 0.0115 S33: -0.1508
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: (CHAIN A AND RESID 74:231)
REMARK 3 ORIGIN FOR THE GROUP (A): -35.5088 -26.9628 -33.8521
REMARK 3 T TENSOR
REMARK 3 T11: 0.2421 T22: 0.2817
REMARK 3 T33: 0.2246 T12: -0.0630
REMARK 3 T13: -0.0215 T23: 0.0638
REMARK 3 L TENSOR
REMARK 3 L11: 1.7564 L22: 1.1121
REMARK 3 L33: 3.3956 L12: -0.3355
REMARK 3 L13: -0.1515 L23: -0.5439
REMARK 3 S TENSOR
REMARK 3 S11: -0.1062 S12: 0.1901 S13: 0.0504
REMARK 3 S21: -0.0057 S22: -0.0808 S23: -0.0812
REMARK 3 S31: -0.1373 S32: 0.2999 S33: 0.0829
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: (CHAIN A AND RESID 232:1102)
REMARK 3 ORIGIN FOR THE GROUP (A): -24.3405 -10.1039 11.3912
REMARK 3 T TENSOR
REMARK 3 T11: 0.4224 T22: 0.3458
REMARK 3 T33: 0.6586 T12: 0.0164
REMARK 3 T13: -0.0629 T23: 0.0517
REMARK 3 L TENSOR
REMARK 3 L11: 3.4999 L22: 0.9046
REMARK 3 L33: 0.4197 L12: -1.0133
REMARK 3 L13: -0.9365 L23: -0.0630
REMARK 3 S TENSOR
REMARK 3 S11: 0.0734 S12: 0.9197 S13: 1.2966
REMARK 3 S21: -0.0643 S22: 0.0291 S23: -0.1130
REMARK 3 S31: -0.3485 S32: -0.0771 S33: -0.0233
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: (CHAIN A AND RESID 1103:1113)
REMARK 3 ORIGIN FOR THE GROUP (A): -19.9357 -6.5256 5.9219
REMARK 3 T TENSOR
REMARK 3 T11: 1.2551 T22: 0.8511
REMARK 3 T33: 1.0863 T12: 0.0629
REMARK 3 T13: -0.0488 T23: 0.4727
REMARK 3 L TENSOR
REMARK 3 L11: 2.7133 L22: 0.8661
REMARK 3 L33: 4.0804 L12: 1.5235
REMARK 3 L13: 0.0871 L23: 0.2638
REMARK 3 S TENSOR
REMARK 3 S11: -0.3910 S12: 0.3701 S13: 1.0822
REMARK 3 S21: 0.3715 S22: -0.3102 S23: 0.3464
REMARK 3 S31: -1.2735 S32: 0.3868 S33: 0.1500
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: (CHAIN A AND RESID 1129:1216)
REMARK 3 ORIGIN FOR THE GROUP (A): -25.2494 -18.7195 18.4927
REMARK 3 T TENSOR
REMARK 3 T11: 0.4460 T22: 0.3843
REMARK 3 T33: 0.3225 T12: -0.0087
REMARK 3 T13: -0.0844 T23: -0.0746
REMARK 3 L TENSOR
REMARK 3 L11: 2.4997 L22: 1.2652
REMARK 3 L33: 0.4244 L12: -0.8011
REMARK 3 L13: 0.2743 L23: 0.3341
REMARK 3 S TENSOR
REMARK 3 S11: -0.1098 S12: -0.1177 S13: 0.0509
REMARK 3 S21: 0.4849 S22: 0.0767 S23: -0.1593
REMARK 3 S31: 0.3338 S32: -0.0875 S33: 0.0067
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 4JRB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAR-13.
REMARK 100 THE DEPOSITION ID IS D_1000078405.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 22-FEB-12
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 23-BM-B
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.0
REMARK 200 MONOCHROMATOR : SI (220)
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000
REMARK 200 DATA SCALING SOFTWARE : HKL-2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3
REMARK 200 DATA REDUNDANCY : 7.100
REMARK 200 R MERGE (I) : 0.08900
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.9000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44
REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0
REMARK 200 DATA REDUNDANCY IN SHELL : 4.70
REMARK 200 R MERGE FOR SHELL (I) : 0.45800
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: MLPHARE
REMARK 200 STARTING MODEL: 3AI4
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 62.22
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.26
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS, 10% PROPANOL, 20% PEG4K,
REMARK 280 PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z+1/2
REMARK 290 3555 -X,Y,-Z+1/2
REMARK 290 4555 X,-Y,-Z
REMARK 290 5555 X+1/2,Y+1/2,Z
REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2
REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2
REMARK 290 8555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.73250
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.73250
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.88400
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.96000
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.88400
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.96000
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 46.73250
REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.88400
REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 70.96000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 46.73250
REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.88400
REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 70.96000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH A1401 LIES ON A SPECIAL POSITION.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A -2
REMARK 465 SER A -1
REMARK 465 ASP A 1114
REMARK 465 LEU A 1115
REMARK 465 LEU A 1116
REMARK 465 GLY A 1117
REMARK 465 ILE A 1118
REMARK 465 PRO A 1119
REMARK 465 HIS A 1120
REMARK 465 ILE A 1121
REMARK 465 PRO A 1122
REMARK 465 VAL A 1123
REMARK 465 SER A 1124
REMARK 465 GLY A 1125
REMARK 465 ARG A 1126
REMARK 465 LYS A 1127
REMARK 465 TYR A 1128
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 LYS A 3 CG CD CE NZ
REMARK 470 GLU A 6 CG CD OE1 OE2
REMARK 470 LYS A 156 CG CD CE NZ
REMARK 470 GLN A 157 CD OE1 NE2
REMARK 470 LYS A 158 CD CE NZ
REMARK 470 LYS A 214 CG CD CE NZ
REMARK 470 GLU A1079 CG CD OE1 OE2
REMARK 470 ASN A1110 CG OD1 ND2
REMARK 470 ILE A1112 CG1 CG2 CD1
REMARK 470 HIS A1129 ND1 CD2 CE1 NE2
REMARK 470 ARG A1132 NE CZ NH1 NH2
REMARK 470 GLU A1150 CD OE1 OE2
REMARK 470 LYS A1153 CG CD CE NZ
REMARK 470 GLU A1158 CG CD OE1 OE2
REMARK 470 LYS A1197 CE NZ
REMARK 470 LYS A1201 CE NZ
REMARK 470 ARG A1213 CG CD NE CZ NH1 NH2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ALA A1105 -60.80 -97.57
REMARK 500
REMARK 500 REMARK: NULL
REMARK 600
REMARK 600 HETEROGEN
REMARK 600
REMARK 600 THE LIGAND DENOTED ADS D12 IS AN UNKNOWN FATTY ACID, WITH THE
REMARK 600 CLOSEST MATCH ON OBSERVED ATOMS TO DODECANE. THE LIGAND DENOTED AS
REMARK 600 PGT IS AN UNKNOWN PHOSPHOLIPID. OTHER STUDIES SUGGEST IT IS LIKELY
REMARK 600 A PHOSPHATIDYL GLYCEROL FROM BACTERIA
REMARK 610
REMARK 610 MISSING HETEROATOM
REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 610 I=INSERTION CODE):
REMARK 610 M RES C SSEQI
REMARK 610 PGT A 1303
REMARK 610 D12 A 1304
REMARK 610 D12 A 1305
REMARK 610 D12 A 1307
REMARK 610 D12 A 1308
REMARK 610 D12 A 1309
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1301
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGT A 1303
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE D12 A 1304
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE D12 A 1305
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE D12 A 1306
DBREF 4JRB A 1 229 UNP P42212 GFP_AEQVI 1 229
DBREF 4JRB A 1034 1216 UNP Q9UAM5 Q9UAM5_BLAGE 34 216
SEQADV 4JRB GLY A -2 UNP P42212 EXPRESSION TAG
SEQADV 4JRB SER A -1 UNP P42212 EXPRESSION TAG
SEQADV 4JRB HIS A 0 UNP P42212 EXPRESSION TAG
SEQADV 4JRB A UNP P42212 SER 65 DELETION
SEQADV 4JRB A UNP P42212 TYR 66 DELETION
SEQADV 4JRB CR2 A 66 UNP P42212 GLY 67 CHROMOPHORE
SEQADV 4JRB ALA A 72 UNP P42212 SER 72 CONFLICT
SEQADV 4JRB ALA A 230 UNP P42212 LINKER
SEQADV 4JRB ALA A 231 UNP P42212 LINKER
SEQADV 4JRB ALA A 232 UNP P42212 LINKER
SEQRES 1 A 416 GLY SER HIS MET SER LYS GLY GLU GLU LEU PHE THR GLY
SEQRES 2 A 416 VAL VAL PRO ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN
SEQRES 3 A 416 GLY HIS LYS PHE SER VAL SER GLY GLU GLY GLU GLY ASP
SEQRES 4 A 416 ALA THR TYR GLY LYS LEU THR LEU LYS PHE ILE CYS THR
SEQRES 5 A 416 THR GLY LYS LEU PRO VAL PRO TRP PRO THR LEU VAL THR
SEQRES 6 A 416 THR PHE CR2 VAL GLN CYS PHE ALA ARG TYR PRO ASP HIS
SEQRES 7 A 416 MET LYS GLN HIS ASP PHE PHE LYS SER ALA MET PRO GLU
SEQRES 8 A 416 GLY TYR VAL GLN GLU ARG THR ILE PHE PHE LYS ASP ASP
SEQRES 9 A 416 GLY ASN TYR LYS THR ARG ALA GLU VAL LYS PHE GLU GLY
SEQRES 10 A 416 ASP THR LEU VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP
SEQRES 11 A 416 PHE LYS GLU ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU
SEQRES 12 A 416 TYR ASN TYR ASN SER HIS ASN VAL TYR ILE MET ALA ASP
SEQRES 13 A 416 LYS GLN LYS ASN GLY ILE LYS VAL ASN PHE LYS ILE ARG
SEQRES 14 A 416 HIS ASN ILE GLU ASP GLY SER VAL GLN LEU ALA ASP HIS
SEQRES 15 A 416 TYR GLN GLN ASN THR PRO ILE GLY ASP GLY PRO VAL LEU
SEQRES 16 A 416 LEU PRO ASP ASN HIS TYR LEU SER THR GLN SER ALA LEU
SEQRES 17 A 416 SER LYS ASP PRO ASN GLU LYS ARG ASP HIS MET VAL LEU
SEQRES 18 A 416 LEU GLU PHE VAL THR ALA ALA GLY ILE ALA ALA ALA ARG
SEQRES 19 A 416 ASN LEU GLN ASP ASP LEU GLN ASP PHE LEU ALA LEU ILE
SEQRES 20 A 416 PRO VAL ASP GLN ILE ILE ALA ILE ALA THR ASP TYR LEU
SEQRES 21 A 416 ALA ASN ASP ALA GLU VAL GLN ALA ALA VAL ALA TYR LEU
SEQRES 22 A 416 GLN SER ASP GLU PHE GLU THR ILE VAL VAL ALA LEU ASP
SEQRES 23 A 416 ALA LEU PRO GLU LEU GLN ASN PHE LEU ASN PHE LEU GLU
SEQRES 24 A 416 ALA ASN GLY LEU ASN ALA ILE ASP PHE LEU ASN GLY ILE
SEQRES 25 A 416 HIS ASP LEU LEU GLY ILE PRO HIS ILE PRO VAL SER GLY
SEQRES 26 A 416 ARG LYS TYR HIS ILE ARG ARG GLY VAL GLY ILE THR GLY
SEQRES 27 A 416 LEU ILE ASP ASP VAL LEU ALA ILE LEU PRO ILE GLU ASP
SEQRES 28 A 416 LEU LYS ALA LEU PHE ASN GLU LYS LEU GLU THR SER PRO
SEQRES 29 A 416 ASP PHE LEU ALA LEU TYR ASN ALA ILE ARG SER PRO GLU
SEQRES 30 A 416 PHE GLN SER ILE VAL GLN THR LEU ASN ALA MET PRO GLU
SEQRES 31 A 416 TYR GLN ASN LEU LEU GLN LYS LEU ARG GLU LYS GLY VAL
SEQRES 32 A 416 ASP VAL ASP LYS ILE ILE GLU LEU ILE ARG ALA LEU PHE
MODRES 4JRB CR2 A 66 GLY CHROMOPHORE
HET CR2 A 66 19
HET CL A1301 1
HET CL A1302 1
HET PGT A1303 41
HET D12 A1304 8
HET D12 A1305 7
HET D12 A1306 12
HET D12 A1307 8
HET D12 A1308 6
HET D12 A1309 9
HETNAM CR2 {(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]-
HETNAM 2 CR2 5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID
HETNAM CL CHLORIDE ION
HETNAM PGT (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)
HETNAM 2 PGT PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE
HETNAM D12 DODECANE
HETSYN CR2 CHROMOPHORE (GLY-TYR-GLY)
HETSYN PGT PHOSPHATIDYLGLYCEROL; 1-PALMITOYL-2-OLEOYL-SN-GLYCERO-
HETSYN 2 PGT 3-[PHOSPHO-RAC-(1-GLYCEROL)](SODIUM SALT)
FORMUL 1 CR2 C13 H13 N3 O4
FORMUL 2 CL 2(CL 1-)
FORMUL 4 PGT C40 H79 O10 P
FORMUL 5 D12 6(C12 H26)
FORMUL 11 HOH *100(H2 O)
HELIX 1 1 LYS A 3 THR A 9 5 7
HELIX 2 2 PRO A 56 VAL A 61 5 6
HELIX 3 3 VAL A 68 ALA A 72 5 5
HELIX 4 4 PRO A 75 HIS A 81 5 7
HELIX 5 5 ASP A 82 ALA A 87 1 6
HELIX 6 6 ASN A 1035 ILE A 1047 1 13
HELIX 7 7 PRO A 1048 ASP A 1063 1 16
HELIX 8 8 ASP A 1063 GLN A 1074 1 12
HELIX 9 9 SER A 1075 LEU A 1088 1 14
HELIX 10 10 LEU A 1088 ASN A 1101 1 14
HELIX 11 11 ASN A 1104 GLY A 1111 1 8
HELIX 12 12 VAL A 1134 LEU A 1147 1 14
HELIX 13 13 PRO A 1148 SER A 1163 1 16
HELIX 14 14 SER A 1163 SER A 1175 1 13
HELIX 15 15 SER A 1175 ALA A 1187 1 13
HELIX 16 16 MET A 1188 GLU A 1200 1 13
HELIX 17 17 ASP A 1204 PHE A 1216 1 13
SHEET 1 A12 VAL A 12 VAL A 22 0
SHEET 2 A12 HIS A 25 ASP A 36 -1 O VAL A 29 N LEU A 18
SHEET 3 A12 LYS A 41 CYS A 48 -1 O LYS A 41 N ASP A 36
SHEET 4 A12 HIS A 217 ALA A 227 -1 O LEU A 220 N LEU A 44
SHEET 5 A12 HIS A 199 SER A 208 -1 N SER A 202 O THR A 225
SHEET 6 A12 HIS A 148 ASP A 155 -1 N ILE A 152 O HIS A 199
SHEET 7 A12 GLY A 160 ASN A 170 -1 O GLY A 160 N ASP A 155
SHEET 8 A12 VAL A 176 PRO A 187 -1 O HIS A 181 N PHE A 165
SHEET 9 A12 TYR A 92 PHE A 100 -1 N VAL A 93 O THR A 186
SHEET 10 A12 ASN A 105 GLU A 115 -1 O TYR A 106 N ILE A 98
SHEET 11 A12 THR A 118 ILE A 128 -1 O VAL A 120 N LYS A 113
SHEET 12 A12 VAL A 12 VAL A 22 1 N ASP A 21 O GLY A 127
LINK C PHE A 64 N1 CR2 A 66 1555 1555 1.33
LINK C3 CR2 A 66 N VAL A 68 1555 1555 1.33
CISPEP 1 MET A 88 PRO A 89 0 -5.85
SITE 1 AC1 1 LYS A 107
SITE 1 AC2 5 ILE A1173 GLN A1179 VAL A1182 LEU A1185
SITE 2 AC2 5 ARG A1213
SITE 1 AC3 1 PHE A1156
SITE 1 AC4 2 LEU A1169 ILE A1173
SITE 1 AC5 3 LEU A1085 LEU A1091 TYR A1191
CRYST1 91.768 141.920 93.465 90.00 90.00 90.00 C 2 2 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.010897 0.000000 0.000000 0.00000
SCALE2 0.000000 0.007046 0.000000 0.00000
SCALE3 0.000000 0.000000 0.010699 0.00000