data_4JRC # _entry.id 4JRC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4JRC pdb_00004jrc 10.2210/pdb4jrc/pdb NDB NA2326 ? ? RCSB RCSB078406 ? ? WWPDB D_1000078406 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-04-24 2 'Structure model' 1 1 2013-05-01 3 'Structure model' 1 2 2013-05-22 4 'Structure model' 1 3 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.value' 20 4 'Structure model' '_struct_conn.pdbx_dist_value' 21 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 22 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 23 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 24 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 29 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 30 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' # _pdbx_database_status.entry_id 4JRC _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-03-21 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Grigg, J.C.' 1 'Ke, A.' 2 # _citation.id primary _citation.title 'T box RNA decodes both the information content and geometry of tRNA to affect gene expression.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 110 _citation.page_first 7240 _citation.page_last 7245 _citation.year 2013 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23589841 _citation.pdbx_database_id_DOI 10.1073/pnas.1222214110 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Grigg, J.C.' 1 ? primary 'Chen, Y.' 2 ? primary 'Grundy, F.J.' 3 ? primary 'Henkin, T.M.' 4 ? primary 'Pollack, L.' 5 ? primary 'Ke, A.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Distal Stem I region of the glyQS T box leader RNA' 18655.002 2 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 3 water nat water 18.015 25 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(GTP)GAACCCUCUCUUCCGAAGCGAGCCGGGGGCGGUGGGAGCCCGGUGAAGACGGUUCC' _entity_poly.pdbx_seq_one_letter_code_can GGAACCCUCUCUUCCGAAGCGAGCCGGGGGCGGUGGGAGCCCGGUGAAGACGGUUCC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GTP n 1 2 G n 1 3 A n 1 4 A n 1 5 C n 1 6 C n 1 7 C n 1 8 U n 1 9 C n 1 10 U n 1 11 C n 1 12 U n 1 13 U n 1 14 C n 1 15 C n 1 16 G n 1 17 A n 1 18 A n 1 19 G n 1 20 C n 1 21 G n 1 22 A n 1 23 G n 1 24 C n 1 25 C n 1 26 G n 1 27 G n 1 28 G n 1 29 G n 1 30 G n 1 31 C n 1 32 G n 1 33 G n 1 34 U n 1 35 G n 1 36 G n 1 37 G n 1 38 A n 1 39 G n 1 40 C n 1 41 C n 1 42 C n 1 43 G n 1 44 G n 1 45 U n 1 46 G n 1 47 A n 1 48 A n 1 49 G n 1 50 A n 1 51 C n 1 52 G n 1 53 G n 1 54 U n 1 55 U n 1 56 C n 1 57 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Synthesized in vitro using T7 RNA polymerase from a plasmid template' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GTP 1 24 24 GTP GTP A . n A 1 2 G 2 25 25 G G A . n A 1 3 A 3 26 26 A A A . n A 1 4 A 4 27 27 A A A . n A 1 5 C 5 28 28 C C A . n A 1 6 C 6 29 29 C C A . n A 1 7 C 7 30 30 C C A . n A 1 8 U 8 31 31 U U A . n A 1 9 C 9 32 32 C C A . n A 1 10 U 10 33 33 U U A . n A 1 11 C 11 34 34 C C A . n A 1 12 U 12 35 35 U U A . n A 1 13 U 13 36 36 U U A . n A 1 14 C 14 37 37 C C A . n A 1 15 C 15 38 38 C C A . n A 1 16 G 16 39 39 G G A . n A 1 17 A 17 40 40 A A A . n A 1 18 A 18 41 41 A A A . n A 1 19 G 19 42 42 G G A . n A 1 20 C 20 43 43 C C A . n A 1 21 G 21 44 44 G G A . n A 1 22 A 22 45 45 A A A . n A 1 23 G 23 46 46 G G A . n A 1 24 C 24 47 47 C C A . n A 1 25 C 25 48 48 C C A . n A 1 26 G 26 49 49 G G A . n A 1 27 G 27 50 50 G G A . n A 1 28 G 28 51 51 G G A . n A 1 29 G 29 52 52 G G A . n A 1 30 G 30 53 53 G G A . n A 1 31 C 31 54 54 C C A . n A 1 32 G 32 55 55 G G A . n A 1 33 G 33 56 56 G G A . n A 1 34 U 34 57 57 U U A . n A 1 35 G 35 58 58 G G A . n A 1 36 G 36 59 59 G G A . n A 1 37 G 37 60 60 G G A . n A 1 38 A 38 61 61 A A A . n A 1 39 G 39 62 62 G G A . n A 1 40 C 40 63 63 C C A . n A 1 41 C 41 64 64 C C A . n A 1 42 C 42 65 65 C C A . n A 1 43 G 43 66 66 G G A . n A 1 44 G 44 67 67 G G A . n A 1 45 U 45 68 68 U U A . n A 1 46 G 46 69 69 G G A . n A 1 47 A 47 70 70 A A A . n A 1 48 A 48 71 71 A A A . n A 1 49 G 49 72 72 G G A . n A 1 50 A 50 73 73 A A A . n A 1 51 C 51 74 74 C C A . n A 1 52 G 52 75 75 G G A . n A 1 53 G 53 76 76 G G A . n A 1 54 U 54 77 77 U U A . n A 1 55 U 55 78 78 U U A . n A 1 56 C 56 79 79 C C A . n A 1 57 C 57 80 80 C C A . n B 1 1 GTP 1 24 24 GTP GTP B . n B 1 2 G 2 25 25 G G B . n B 1 3 A 3 26 26 A A B . n B 1 4 A 4 27 27 A A B . n B 1 5 C 5 28 28 C C B . n B 1 6 C 6 29 29 C C B . n B 1 7 C 7 30 30 C C B . n B 1 8 U 8 31 31 U U B . n B 1 9 C 9 32 32 C C B . n B 1 10 U 10 33 33 U U B . n B 1 11 C 11 34 34 C C B . n B 1 12 U 12 35 35 U U B . n B 1 13 U 13 36 36 U U B . n B 1 14 C 14 37 37 C C B . n B 1 15 C 15 38 38 C C B . n B 1 16 G 16 39 39 G G B . n B 1 17 A 17 40 40 A A B . n B 1 18 A 18 41 41 A A B . n B 1 19 G 19 42 42 G G B . n B 1 20 C 20 43 43 C C B . n B 1 21 G 21 44 44 G G B . n B 1 22 A 22 45 45 A A B . n B 1 23 G 23 46 46 G G B . n B 1 24 C 24 47 47 C C B . n B 1 25 C 25 48 48 C C B . n B 1 26 G 26 49 49 G G B . n B 1 27 G 27 50 50 G G B . n B 1 28 G 28 51 51 G G B . n B 1 29 G 29 52 52 G G B . n B 1 30 G 30 53 53 G G B . n B 1 31 C 31 54 54 C C B . n B 1 32 G 32 55 55 G G B . n B 1 33 G 33 56 56 G G B . n B 1 34 U 34 57 57 U U B . n B 1 35 G 35 58 58 G G B . n B 1 36 G 36 59 59 G G B . n B 1 37 G 37 60 60 G G B . n B 1 38 A 38 61 61 A A B . n B 1 39 G 39 62 62 G G B . n B 1 40 C 40 63 63 C C B . n B 1 41 C 41 64 64 C C B . n B 1 42 C 42 65 65 C C B . n B 1 43 G 43 66 66 G G B . n B 1 44 G 44 67 67 G G B . n B 1 45 U 45 68 68 U U B . n B 1 46 G 46 69 69 G G B . n B 1 47 A 47 70 70 A A B . n B 1 48 A 48 71 71 A A B . n B 1 49 G 49 72 72 G G B . n B 1 50 A 50 73 73 A A B . n B 1 51 C 51 74 74 C C B . n B 1 52 G 52 75 75 G G B . n B 1 53 G 53 76 76 G G B . n B 1 54 U 54 77 77 U U B . n B 1 55 U 55 78 78 U U B . n B 1 56 C 56 79 79 C C B . n B 1 57 C 57 80 80 C C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 101 2 MG MG A . D 2 MG 1 101 1 MG MG B . E 3 HOH 1 201 1 HOH HOH A . E 3 HOH 2 202 2 HOH HOH A . E 3 HOH 3 203 4 HOH HOH A . E 3 HOH 4 204 5 HOH HOH A . E 3 HOH 5 205 7 HOH HOH A . E 3 HOH 6 206 11 HOH HOH A . E 3 HOH 7 207 12 HOH HOH A . E 3 HOH 8 208 13 HOH HOH A . E 3 HOH 9 209 18 HOH HOH A . E 3 HOH 10 210 20 HOH HOH A . E 3 HOH 11 211 24 HOH HOH A . E 3 HOH 12 212 25 HOH HOH A . E 3 HOH 13 213 26 HOH HOH A . F 3 HOH 1 201 3 HOH HOH B . F 3 HOH 2 202 6 HOH HOH B . F 3 HOH 3 203 8 HOH HOH B . F 3 HOH 4 204 9 HOH HOH B . F 3 HOH 5 205 10 HOH HOH B . F 3 HOH 6 206 14 HOH HOH B . F 3 HOH 7 207 16 HOH HOH B . F 3 HOH 8 208 19 HOH HOH B . F 3 HOH 9 209 21 HOH HOH B . F 3 HOH 10 210 22 HOH HOH B . F 3 HOH 11 211 23 HOH HOH B . F 3 HOH 12 212 27 HOH HOH B . # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 SOLVE . ? program 'Tom Terwilliger' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 4 RESOLVE 2.15 20-Mar-2010 program 'Thomas C. Terwilliger' terwilliger@lanl.gov phasing http://www.solve.lanl.gov/ ? ? 5 PHENIX 1.8.1_1168 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 6 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 7 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 8 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 9 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? # _cell.length_a 116.461 _cell.length_b 41.511 _cell.length_c 90.417 _cell.angle_alpha 90.000 _cell.angle_beta 106.760 _cell.angle_gamma 90.000 _cell.entry_id 4JRC _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.entry_id 4JRC _symmetry.Int_Tables_number 5 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 4JRC _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.80 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 56.14 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;80mM NaCl, 12mM KCl, 20mM MgCl2, 40mM sodium cacodylate, 12mM spermine, 28% 2-methyl-1,3 propanediol, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2012-07-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Horizontal focusing 5.05 asymmetric cut Si(111)' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9767 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'CHESS BEAMLINE A1' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9767 _diffrn_source.pdbx_synchrotron_site CHESS _diffrn_source.pdbx_synchrotron_beamline A1 # _reflns.entry_id 4JRC _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3 _reflns.d_resolution_high 2.650 _reflns.d_resolution_low 35.000 _reflns.number_all ? _reflns.number_obs 11578 _reflns.percent_possible_obs 97.200 _reflns.pdbx_Rmerge_I_obs 0.068 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 10.900 _reflns.B_iso_Wilson_estimate 48.89 _reflns.pdbx_redundancy 3.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_obs _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_redundancy _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.650 2.700 ? 82.700 0.484 1.808 ? 3.100 473 ? ? ? ? 1 1 2.700 2.740 ? 85.600 0.482 1.931 ? 3.100 529 ? ? ? ? 2 1 2.740 2.800 ? 90.100 0.418 2.041 ? 3.300 508 ? ? ? ? 3 1 2.800 2.850 ? 94.200 0.323 3.086 ? 3.400 534 ? ? ? ? 4 1 2.850 2.920 ? 97.500 0.305 3.507 ? 3.400 615 ? ? ? ? 5 1 2.920 2.980 ? 99.100 0.218 5.286 ? 3.600 571 ? ? ? ? 6 1 2.980 3.060 ? 100.000 0.212 5.942 ? 3.600 572 ? ? ? ? 7 1 3.060 3.140 ? 100.000 0.140 9.822 ? 3.600 588 ? ? ? ? 8 1 3.140 3.230 ? 100.000 0.113 12.164 ? 3.700 605 ? ? ? ? 9 1 3.230 3.340 ? 99.700 0.103 16.639 ? 3.700 589 ? ? ? ? 10 1 3.340 3.460 ? 99.500 0.085 24.870 ? 3.700 600 ? ? ? ? 11 1 3.460 3.600 ? 100.000 0.086 15.507 ? 3.700 578 ? ? ? ? 12 1 3.600 3.760 ? 99.800 0.067 20.645 ? 3.700 598 ? ? ? ? 13 1 3.760 3.960 ? 99.800 0.058 23.083 ? 3.700 585 ? ? ? ? 14 1 3.960 4.200 ? 100.000 0.051 27.945 ? 3.600 596 ? ? ? ? 15 1 4.200 4.530 ? 100.000 0.050 27.776 ? 3.700 593 ? ? ? ? 16 1 4.530 4.980 ? 100.000 0.045 30.338 ? 3.700 619 ? ? ? ? 17 1 4.980 5.700 ? 99.700 0.033 36.380 ? 3.600 596 ? ? ? ? 18 1 5.700 7.170 ? 99.700 0.033 37.338 ? 3.600 612 ? ? ? ? 19 1 7.170 35.000 ? 96.300 0.026 47.560 ? 3.400 617 ? ? ? ? 20 1 # _refine.entry_id 4JRC _refine.ls_d_res_high 2.6730 _refine.ls_d_res_low 20.1400 _refine.pdbx_ls_sigma_F 1.350 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 95.7100 _refine.ls_number_reflns_obs 11484 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details ? _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2051 _refine.ls_R_factor_R_work 0.2010 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2427 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 10.0200 _refine.ls_number_reflns_R_free 1151 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 81.9439 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.3900 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.7754 _refine.B_iso_max 205.220 _refine.B_iso_min 33.850 _refine.pdbx_overall_phase_error 28.4400 _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2472 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 25 _refine_hist.number_atoms_total 2499 _refine_hist.d_res_high 2.6730 _refine_hist.d_res_low 20.1400 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 2762 0.001 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 4308 0.409 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 568 0.019 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 114 0.002 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 1366 11.385 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 2.6732 2.7945 8 79.0000 1054 . 0.3358 0.3642 . 118 . 1172 . . 'X-RAY DIFFRACTION' 2.7945 2.9414 8 93.0000 1257 . 0.3220 0.3948 . 139 . 1396 . . 'X-RAY DIFFRACTION' 2.9414 3.1251 8 99.0000 1304 . 0.2628 0.3302 . 145 . 1449 . . 'X-RAY DIFFRACTION' 3.1251 3.3654 8 98.0000 1304 . 0.2216 0.2522 . 144 . 1448 . . 'X-RAY DIFFRACTION' 3.3654 3.7022 8 97.0000 1310 . 0.1883 0.2475 . 148 . 1458 . . 'X-RAY DIFFRACTION' 3.7022 4.2335 8 100.0000 1347 . 0.1636 0.2074 . 151 . 1498 . . 'X-RAY DIFFRACTION' 4.2335 5.3175 8 100.0000 1364 . 0.1738 0.2261 . 151 . 1515 . . 'X-RAY DIFFRACTION' 5.3175 20.1403 8 99.0000 1393 . 0.1767 0.1969 . 155 . 1548 . . 'X-RAY DIFFRACTION' # _struct.entry_id 4JRC _struct.title 'Distal Stem I region from G. kaustophilus glyQS T box RNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4JRC _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'T box RNA, Regulatory RNA leader sequence, tRNA binding, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4JRC _struct_ref.pdbx_db_accession 4JRC _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code GGAACCCUCUCUUCCGAAGCGAGCCGGGGGCGGUGGGAGCCCGGUGAAGACGGUUCC _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4JRC A 1 ? 57 ? 4JRC 24 ? 80 ? 24 80 2 1 4JRC B 1 ? 57 ? 4JRC 24 ? 80 ? 24 80 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,E 2 1 B,D,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GTP 1 "O3'" ? ? ? 1_555 A G 2 P ? ? A GTP 24 A G 25 1_555 ? ? ? ? ? ? ? 1.591 ? ? covale2 covale both ? B GTP 1 "O3'" ? ? ? 1_555 B G 2 P ? ? B GTP 24 B G 25 1_555 ? ? ? ? ? ? ? 1.591 ? ? metalc1 metalc ? ? A A 17 OP2 ? ? ? 1_555 C MG . MG ? ? A A 40 A MG 101 1_555 ? ? ? ? ? ? ? 2.320 ? ? metalc2 metalc ? ? A G 19 O6 ? ? ? 1_555 C MG . MG ? ? A G 42 A MG 101 1_555 ? ? ? ? ? ? ? 2.111 ? ? metalc3 metalc ? ? B A 17 OP2 ? ? ? 1_555 D MG . MG ? ? B A 40 B MG 101 1_555 ? ? ? ? ? ? ? 2.364 ? ? metalc4 metalc ? ? B G 19 O6 ? ? ? 1_555 D MG . MG ? ? B G 42 B MG 101 1_555 ? ? ? ? ? ? ? 2.079 ? ? metalc5 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? B MG 101 B HOH 210 1_555 ? ? ? ? ? ? ? 2.628 ? ? hydrog1 hydrog ? ? A GTP 1 N1 ? ? ? 1_555 A C 57 N3 ? ? A GTP 24 A C 80 1_555 ? ? ? ? ? ? 'GTP-C PAIR' ? ? ? hydrog2 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 56 N3 ? ? A G 25 A C 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 56 O2 ? ? A G 25 A C 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 56 N4 ? ? A G 25 A C 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 55 N3 ? ? A A 26 A U 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 55 O4 ? ? A A 26 A U 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 54 N3 ? ? A A 27 A U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 54 O4 ? ? A A 27 A U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 53 N1 ? ? A C 28 A G 76 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog10 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 52 N1 ? ? A C 29 A G 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 52 O6 ? ? A C 29 A G 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 52 N2 ? ? A C 29 A G 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 7 O2 ? ? ? 1_555 A A 50 N6 ? ? A C 30 A A 73 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog14 hydrog ? ? A U 8 O4 ? ? ? 1_555 A G 52 N2 ? ? A U 31 A G 75 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog15 hydrog ? ? A C 9 N4 ? ? ? 1_555 A G 52 N3 ? ? A C 32 A G 75 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog16 hydrog ? ? A U 10 N3 ? ? ? 1_555 A A 50 N1 ? ? A U 33 A A 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 10 O4 ? ? ? 1_555 A A 50 N6 ? ? A U 33 A A 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 11 N3 ? ? ? 1_555 A G 49 N1 ? ? A C 34 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 11 N4 ? ? ? 1_555 A G 49 O6 ? ? A C 34 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 11 O2 ? ? ? 1_555 A G 49 N2 ? ? A C 34 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 48 N1 ? ? A U 35 A A 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 48 N6 ? ? A U 35 A A 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A U 13 N3 ? ? ? 1_555 A A 47 N1 ? ? A U 36 A A 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A U 13 O4 ? ? ? 1_555 A A 47 N6 ? ? A U 36 A A 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 46 N1 ? ? A C 37 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 46 O6 ? ? A C 37 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 46 N2 ? ? A C 37 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A A 18 N1 ? ? ? 1_555 A A 22 N6 ? ? A A 41 A A 45 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog29 hydrog ? ? A A 18 N6 ? ? ? 1_555 A A 22 N7 ? ? A A 41 A A 45 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog30 hydrog ? ? A G 19 N2 ? ? ? 1_555 A A 38 N1 ? ? A G 42 A A 61 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog31 hydrog ? ? A C 20 N4 ? ? ? 1_555 A G 32 O6 ? ? A C 43 A G 55 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog32 hydrog ? ? A C 20 N3 ? ? ? 1_555 A G 39 N1 ? ? A C 43 A G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 20 N4 ? ? ? 1_555 A G 39 O6 ? ? A C 43 A G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 20 O2 ? ? ? 1_555 A G 39 N2 ? ? A C 43 A G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 21 O6 ? ? ? 1_555 A G 33 N1 ? ? A G 44 A G 56 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog36 hydrog ? ? A A 22 N1 ? ? ? 1_555 A G 35 N2 ? ? A A 45 A G 58 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog37 hydrog ? ? A A 22 N6 ? ? ? 1_555 A G 35 N3 ? ? A A 45 A G 58 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog38 hydrog ? ? A G 23 N1 ? ? ? 1_555 A U 45 O2 ? ? A G 46 A U 68 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog39 hydrog ? ? A G 23 O6 ? ? ? 1_555 A U 45 N3 ? ? A G 46 A U 68 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog40 hydrog ? ? A C 24 N3 ? ? ? 1_555 A G 44 N1 ? ? A C 47 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 24 N4 ? ? ? 1_555 A G 44 O6 ? ? A C 47 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 24 O2 ? ? ? 1_555 A G 44 N2 ? ? A C 47 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 25 N3 ? ? ? 1_555 A G 43 N1 ? ? A C 48 A G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 25 N4 ? ? ? 1_555 A G 43 O6 ? ? A C 48 A G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 25 O2 ? ? ? 1_555 A G 43 N2 ? ? A C 48 A G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 26 N1 ? ? ? 1_555 A C 42 N3 ? ? A G 49 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 26 N2 ? ? ? 1_555 A C 42 O2 ? ? A G 49 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 26 O6 ? ? ? 1_555 A C 42 N4 ? ? A G 49 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 27 N1 ? ? ? 1_555 A C 41 N3 ? ? A G 50 A C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 27 N2 ? ? ? 1_555 A C 41 O2 ? ? A G 50 A C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 27 O6 ? ? ? 1_555 A C 41 N4 ? ? A G 50 A C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 28 N1 ? ? ? 1_555 A C 40 N3 ? ? A G 51 A C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 28 N2 ? ? ? 1_555 A C 40 O2 ? ? A G 51 A C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 28 O6 ? ? ? 1_555 A C 40 N4 ? ? A G 51 A C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A U 34 N3 ? ? ? 1_555 A A 38 N7 ? ? A U 57 A A 61 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog56 hydrog ? ? A U 34 O2 ? ? ? 1_555 A A 38 N6 ? ? A U 57 A A 61 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog57 hydrog ? ? B GTP 1 N1 ? ? ? 1_555 B C 57 N3 ? ? B GTP 24 B C 80 1_555 ? ? ? ? ? ? 'GTP-C PAIR' ? ? ? hydrog58 hydrog ? ? B G 2 N1 ? ? ? 1_555 B C 56 N3 ? ? B G 25 B C 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? B G 2 N2 ? ? ? 1_555 B C 56 O2 ? ? B G 25 B C 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? B G 2 O6 ? ? ? 1_555 B C 56 N4 ? ? B G 25 B C 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? B A 3 N1 ? ? ? 1_555 B U 55 N3 ? ? B A 26 B U 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? B A 3 N6 ? ? ? 1_555 B U 55 O4 ? ? B A 26 B U 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? B A 4 N1 ? ? ? 1_555 B U 54 N3 ? ? B A 27 B U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? B A 4 N6 ? ? ? 1_555 B U 54 O4 ? ? B A 27 B U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? B C 5 O2 ? ? ? 1_555 B G 53 N2 ? ? B C 28 B G 76 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog66 hydrog ? ? B C 6 N4 ? ? ? 1_555 B G 52 O6 ? ? B C 29 B G 75 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog67 hydrog ? ? B C 7 O2 ? ? ? 1_555 B C 9 N4 ? ? B C 30 B C 32 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog68 hydrog ? ? B C 7 N3 ? ? ? 1_555 B A 50 N6 ? ? B C 30 B A 73 1_555 ? ? ? ? ? ? TYPE_25_PAIR ? ? ? hydrog69 hydrog ? ? B C 7 N4 ? ? ? 1_555 B A 50 N7 ? ? B C 30 B A 73 1_555 ? ? ? ? ? ? TYPE_25_PAIR ? ? ? hydrog70 hydrog ? ? B U 8 O4 ? ? ? 1_555 B G 52 N2 ? ? B U 31 B G 75 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog71 hydrog ? ? B C 9 N4 ? ? ? 1_555 B G 52 N3 ? ? B C 32 B G 75 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog72 hydrog ? ? B U 10 N3 ? ? ? 1_555 B A 50 N1 ? ? B U 33 B A 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? B U 10 O4 ? ? ? 1_555 B A 50 N6 ? ? B U 33 B A 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? B C 11 N3 ? ? ? 1_555 B G 49 N1 ? ? B C 34 B G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? B C 11 N4 ? ? ? 1_555 B G 49 O6 ? ? B C 34 B G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? B C 11 O2 ? ? ? 1_555 B G 49 N2 ? ? B C 34 B G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? B U 12 N3 ? ? ? 1_555 B A 48 N1 ? ? B U 35 B A 71 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog78 hydrog ? ? B U 13 N3 ? ? ? 1_555 B A 47 N1 ? ? B U 36 B A 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? B U 13 O4 ? ? ? 1_555 B A 47 N6 ? ? B U 36 B A 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? B C 14 N3 ? ? ? 1_555 B G 46 N1 ? ? B C 37 B G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? B C 14 N4 ? ? ? 1_555 B G 46 O6 ? ? B C 37 B G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? B C 14 O2 ? ? ? 1_555 B G 46 N2 ? ? B C 37 B G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? B A 18 N1 ? ? ? 1_555 B A 22 N6 ? ? B A 41 B A 45 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog84 hydrog ? ? B A 18 N6 ? ? ? 1_555 B A 22 N7 ? ? B A 41 B A 45 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog85 hydrog ? ? B G 19 N2 ? ? ? 1_555 B A 38 N1 ? ? B G 42 B A 61 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog86 hydrog ? ? B G 19 N3 ? ? ? 1_555 B A 38 N6 ? ? B G 42 B A 61 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog87 hydrog ? ? B C 20 N4 ? ? ? 1_555 B G 32 O6 ? ? B C 43 B G 55 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog88 hydrog ? ? B C 20 N3 ? ? ? 1_555 B G 39 N1 ? ? B C 43 B G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? B C 20 N4 ? ? ? 1_555 B G 39 O6 ? ? B C 43 B G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? B C 20 O2 ? ? ? 1_555 B G 39 N2 ? ? B C 43 B G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? B G 21 O6 ? ? ? 1_555 B G 33 N1 ? ? B G 44 B G 56 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog92 hydrog ? ? B A 22 N1 ? ? ? 1_555 B G 35 N2 ? ? B A 45 B G 58 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog93 hydrog ? ? B G 23 N1 ? ? ? 1_555 B U 45 O2 ? ? B G 46 B U 68 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog94 hydrog ? ? B G 23 O6 ? ? ? 1_555 B U 45 N3 ? ? B G 46 B U 68 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog95 hydrog ? ? B C 24 N3 ? ? ? 1_555 B G 44 N1 ? ? B C 47 B G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? B C 24 N4 ? ? ? 1_555 B G 44 O6 ? ? B C 47 B G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? B C 24 O2 ? ? ? 1_555 B G 44 N2 ? ? B C 47 B G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? B C 25 N3 ? ? ? 1_555 B G 43 N1 ? ? B C 48 B G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? B C 25 N4 ? ? ? 1_555 B G 43 O6 ? ? B C 48 B G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? B C 25 O2 ? ? ? 1_555 B G 43 N2 ? ? B C 48 B G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? B G 26 N1 ? ? ? 1_555 B C 42 N3 ? ? B G 49 B C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? B G 26 N2 ? ? ? 1_555 B C 42 O2 ? ? B G 49 B C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? B G 26 O6 ? ? ? 1_555 B C 42 N4 ? ? B G 49 B C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? B G 27 N1 ? ? ? 1_555 B C 41 N3 ? ? B G 50 B C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? B G 27 N2 ? ? ? 1_555 B C 41 O2 ? ? B G 50 B C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? B G 27 O6 ? ? ? 1_555 B C 41 N4 ? ? B G 50 B C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? B G 28 N1 ? ? ? 1_555 B C 40 N3 ? ? B G 51 B C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? B G 28 N2 ? ? ? 1_555 B C 40 O2 ? ? B G 51 B C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? B G 28 O6 ? ? ? 1_555 B C 40 N4 ? ? B G 51 B C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? B U 34 N3 ? ? ? 1_555 B A 38 N7 ? ? B U 57 B A 61 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog111 hydrog ? ? B U 34 O2 ? ? ? 1_555 B A 38 N6 ? ? B U 57 B A 61 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? A A 17 ? A A 40 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O6 ? A G 19 ? A G 42 ? 1_555 161.4 ? 2 OP2 ? B A 17 ? B A 40 ? 1_555 MG ? D MG . ? B MG 101 ? 1_555 O6 ? B G 19 ? B G 42 ? 1_555 156.7 ? 3 OP2 ? B A 17 ? B A 40 ? 1_555 MG ? D MG . ? B MG 101 ? 1_555 O ? F HOH . ? B HOH 210 ? 1_555 87.2 ? 4 O6 ? B G 19 ? B G 42 ? 1_555 MG ? D MG . ? B MG 101 ? 1_555 O ? F HOH . ? B HOH 210 ? 1_555 71.3 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 2 ? AC2 Software ? ? ? ? 3 ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 A A 17 ? A A 40 . ? 1_555 ? 2 AC1 2 G A 19 ? G A 42 . ? 1_555 ? 3 AC2 3 A B 17 ? A B 40 . ? 1_555 ? 4 AC2 3 G B 19 ? G B 42 . ? 1_555 ? 5 AC2 3 HOH F . ? HOH B 210 . ? 1_555 ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 GTP _pdbx_validate_rmsd_angle.auth_seq_id_1 24 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 P _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 G _pdbx_validate_rmsd_angle.auth_seq_id_2 25 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OP1 _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 G _pdbx_validate_rmsd_angle.auth_seq_id_3 25 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 123.39 _pdbx_validate_rmsd_angle.angle_target_value 110.50 _pdbx_validate_rmsd_angle.angle_deviation 12.89 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.10 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A GTP 1 A GTP 24 ? G "GUANOSINE-5'-TRIPHOSPHATE" 2 B GTP 1 B GTP 24 ? G "GUANOSINE-5'-TRIPHOSPHATE" # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 3.500 _diffrn_reflns.pdbx_d_res_low 35.000 _diffrn_reflns.pdbx_number_obs 5591 _diffrn_reflns.pdbx_Rmerge_I_obs 0.231 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared 3.58 _diffrn_reflns.av_sigmaI_over_netI ? _diffrn_reflns.pdbx_redundancy 9.50 _diffrn_reflns.pdbx_percent_possible_obs 94.70 _diffrn_reflns.number 52864 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 9.44 35.00 ? ? 0.132 ? 21.162 6.90 99.10 1 7.52 9.44 ? ? 0.135 ? 9.995 8.90 100.00 1 6.57 7.52 ? ? 0.145 ? 5.707 10.10 99.70 1 5.98 6.57 ? ? 0.187 ? 4.019 11.40 100.00 1 5.55 5.98 ? ? 0.211 ? 3.737 11.50 100.00 1 5.22 5.55 ? ? 0.269 ? 3.251 11.80 100.00 1 4.96 5.22 ? ? 0.306 ? 2.632 12.00 100.00 1 4.75 4.96 ? ? 0.342 ? 2.097 12.10 100.00 1 4.57 4.75 ? ? 0.373 ? 1.912 11.70 100.00 1 4.41 4.57 ? ? 0.369 ? 1.849 11.40 100.00 1 4.27 4.41 ? ? 0.423 ? 1.627 10.60 100.00 1 4.15 4.27 ? ? 0.413 ? 1.667 9.90 99.70 1 4.04 4.15 ? ? 0.239 ? 1.726 9.10 99.00 1 3.94 4.04 ? ? 0.349 ? 1.790 8.40 96.40 1 3.85 3.94 ? ? 0.478 ? 1.590 7.70 95.40 1 3.77 3.85 ? ? 0.459 ? 1.286 7.10 89.90 1 3.69 3.77 ? ? 0.394 ? 1.381 7.00 85.30 1 3.62 3.69 ? ? 0.444 ? 1.327 6.70 81.20 1 3.56 3.62 ? ? 0.541 ? 1.264 6.10 75.10 1 3.50 3.56 ? ? 0.497 ? 1.181 5.70 72.20 # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 16.6610 49.9943 -8.7180 1.2493 1.4765 0.6877 0.0238 -0.3625 -0.1706 1.1106 0.8831 1.5182 1.0520 -0.1352 -0.7675 -0.7386 -0.0318 0.5808 1.4023 0.3415 0.1217 -0.5280 -0.6032 -0.4585 'X-RAY DIFFRACTION' 2 ? refined 14.6338 45.6602 12.1494 0.6234 0.3289 0.4647 0.0244 -0.1886 -0.0663 3.6283 5.3467 0.9388 0.2261 1.1720 -1.2178 -0.1027 0.0199 0.0959 0.2973 0.1901 0.1957 0.1058 -0.1163 0.0397 'X-RAY DIFFRACTION' 3 ? refined 10.8361 50.0262 -21.7703 1.4041 1.6596 0.7231 0.0416 -0.5583 -0.0917 4.8434 4.7993 4.5734 1.5956 -2.3259 2.1744 -0.8383 1.2420 0.2788 0.9265 0.8614 0.3721 -0.6443 0.0950 -0.7815 'X-RAY DIFFRACTION' 4 ? refined 36.7448 15.2994 50.0423 1.4957 2.0283 0.5490 -0.3037 0.0132 -0.0993 3.0535 2.9871 0.3890 -0.0068 0.9871 -0.5061 -0.6597 0.5633 0.0341 -0.0276 -0.1546 0.0058 -0.1952 -0.3010 1.5212 'X-RAY DIFFRACTION' 5 ? refined 28.4895 19.4721 29.9598 0.9211 0.6205 0.4858 -0.0804 -0.0975 -0.0009 1.7832 2.6998 3.5887 0.9028 -1.7381 -2.9547 0.3214 -0.1749 0.0030 -0.7736 -0.1093 -0.0449 0.6981 -0.7013 0.7871 'X-RAY DIFFRACTION' 6 ? refined 16.5223 23.2008 23.2747 0.7165 0.3402 0.3874 -0.0672 -0.1304 -0.0057 2.2348 5.8040 2.5524 -1.7207 0.1968 -2.4489 -0.0504 0.2031 -0.1244 -0.2493 -0.1786 0.2963 0.5593 0.0353 -0.3017 'X-RAY DIFFRACTION' 7 ? refined 34.2646 15.3918 47.7990 1.4719 1.6357 0.4283 -0.3737 -0.2032 -0.0498 2.1831 2.5398 2.6442 -0.4185 2.3671 -0.2610 -0.0412 0.3591 -0.0006 -1.1809 0.0334 0.0320 0.9528 -0.4755 1.0078 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 0 A 0 ;chain 'A' and (resid 24 through 40 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 0 A 0 ;chain 'A' and (resid 41 through 73 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 0 A 0 ;chain 'A' and (resid 74 through 80 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 B 0 B 0 ;chain 'B' and (resid 24 through 32 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 B 0 B 0 ;chain 'B' and (resid 33 through 40 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 6 6 B 0 B 0 ;chain 'B' and (resid 41 through 68 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 7 7 B 0 B 0 ;chain 'B' and (resid 69 through 80 ) ; ? ? ? ? ? # _pdbx_phasing_dm.entry_id 4JRC _pdbx_phasing_dm.fom_acentric 0.780 _pdbx_phasing_dm.fom_centric 0.710 _pdbx_phasing_dm.fom 0.770 _pdbx_phasing_dm.reflns_acentric 4428 _pdbx_phasing_dm.reflns_centric 594 _pdbx_phasing_dm.reflns 5022 # loop_ _pdbx_phasing_dm_shell.d_res_high _pdbx_phasing_dm_shell.d_res_low _pdbx_phasing_dm_shell.delta_phi_final _pdbx_phasing_dm_shell.delta_phi_initial _pdbx_phasing_dm_shell.fom_acentric _pdbx_phasing_dm_shell.fom_centric _pdbx_phasing_dm_shell.fom _pdbx_phasing_dm_shell.reflns_acentric _pdbx_phasing_dm_shell.reflns_centric _pdbx_phasing_dm_shell.reflns 3.600 3.900 ? ? 0.750 0.870 0.760 791 64 855 6.400 10.300 ? ? 0.840 0.670 0.810 586 123 709 5.100 6.400 ? ? 0.800 0.750 0.790 744 108 852 4.500 5.100 ? ? 0.770 0.680 0.760 761 100 861 3.900 4.500 ? ? 0.770 0.740 0.760 1381 136 1517 # _phasing.method SAD # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 GTP PG P N N 111 GTP O1G O N N 112 GTP O2G O N N 113 GTP O3G O N N 114 GTP O3B O N N 115 GTP PB P N N 116 GTP O1B O N N 117 GTP O2B O N N 118 GTP O3A O N N 119 GTP PA P N N 120 GTP O1A O N N 121 GTP O2A O N N 122 GTP "O5'" O N N 123 GTP "C5'" C N N 124 GTP "C4'" C N R 125 GTP "O4'" O N N 126 GTP "C3'" C N S 127 GTP "O3'" O N N 128 GTP "C2'" C N R 129 GTP "O2'" O N N 130 GTP "C1'" C N R 131 GTP N9 N Y N 132 GTP C8 C Y N 133 GTP N7 N Y N 134 GTP C5 C Y N 135 GTP C6 C N N 136 GTP O6 O N N 137 GTP N1 N N N 138 GTP C2 C N N 139 GTP N2 N N N 140 GTP N3 N N N 141 GTP C4 C Y N 142 GTP HOG2 H N N 143 GTP HOG3 H N N 144 GTP HOB2 H N N 145 GTP HOA2 H N N 146 GTP "H5'" H N N 147 GTP "H5''" H N N 148 GTP "H4'" H N N 149 GTP "H3'" H N N 150 GTP "HO3'" H N N 151 GTP "H2'" H N N 152 GTP "HO2'" H N N 153 GTP "H1'" H N N 154 GTP H8 H N N 155 GTP HN1 H N N 156 GTP HN21 H N N 157 GTP HN22 H N N 158 HOH O O N N 159 HOH H1 H N N 160 HOH H2 H N N 161 MG MG MG N N 162 U OP3 O N N 163 U P P N N 164 U OP1 O N N 165 U OP2 O N N 166 U "O5'" O N N 167 U "C5'" C N N 168 U "C4'" C N R 169 U "O4'" O N N 170 U "C3'" C N S 171 U "O3'" O N N 172 U "C2'" C N R 173 U "O2'" O N N 174 U "C1'" C N R 175 U N1 N N N 176 U C2 C N N 177 U O2 O N N 178 U N3 N N N 179 U C4 C N N 180 U O4 O N N 181 U C5 C N N 182 U C6 C N N 183 U HOP3 H N N 184 U HOP2 H N N 185 U "H5'" H N N 186 U "H5''" H N N 187 U "H4'" H N N 188 U "H3'" H N N 189 U "HO3'" H N N 190 U "H2'" H N N 191 U "HO2'" H N N 192 U "H1'" H N N 193 U H3 H N N 194 U H5 H N N 195 U H6 H N N 196 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 GTP PG O1G doub N N 116 GTP PG O2G sing N N 117 GTP PG O3G sing N N 118 GTP PG O3B sing N N 119 GTP O2G HOG2 sing N N 120 GTP O3G HOG3 sing N N 121 GTP O3B PB sing N N 122 GTP PB O1B doub N N 123 GTP PB O2B sing N N 124 GTP PB O3A sing N N 125 GTP O2B HOB2 sing N N 126 GTP O3A PA sing N N 127 GTP PA O1A doub N N 128 GTP PA O2A sing N N 129 GTP PA "O5'" sing N N 130 GTP O2A HOA2 sing N N 131 GTP "O5'" "C5'" sing N N 132 GTP "C5'" "C4'" sing N N 133 GTP "C5'" "H5'" sing N N 134 GTP "C5'" "H5''" sing N N 135 GTP "C4'" "O4'" sing N N 136 GTP "C4'" "C3'" sing N N 137 GTP "C4'" "H4'" sing N N 138 GTP "O4'" "C1'" sing N N 139 GTP "C3'" "O3'" sing N N 140 GTP "C3'" "C2'" sing N N 141 GTP "C3'" "H3'" sing N N 142 GTP "O3'" "HO3'" sing N N 143 GTP "C2'" "O2'" sing N N 144 GTP "C2'" "C1'" sing N N 145 GTP "C2'" "H2'" sing N N 146 GTP "O2'" "HO2'" sing N N 147 GTP "C1'" N9 sing N N 148 GTP "C1'" "H1'" sing N N 149 GTP N9 C8 sing Y N 150 GTP N9 C4 sing Y N 151 GTP C8 N7 doub Y N 152 GTP C8 H8 sing N N 153 GTP N7 C5 sing Y N 154 GTP C5 C6 sing N N 155 GTP C5 C4 doub Y N 156 GTP C6 O6 doub N N 157 GTP C6 N1 sing N N 158 GTP N1 C2 sing N N 159 GTP N1 HN1 sing N N 160 GTP C2 N2 sing N N 161 GTP C2 N3 doub N N 162 GTP N2 HN21 sing N N 163 GTP N2 HN22 sing N N 164 GTP N3 C4 sing N N 165 HOH O H1 sing N N 166 HOH O H2 sing N N 167 U OP3 P sing N N 168 U OP3 HOP3 sing N N 169 U P OP1 doub N N 170 U P OP2 sing N N 171 U P "O5'" sing N N 172 U OP2 HOP2 sing N N 173 U "O5'" "C5'" sing N N 174 U "C5'" "C4'" sing N N 175 U "C5'" "H5'" sing N N 176 U "C5'" "H5''" sing N N 177 U "C4'" "O4'" sing N N 178 U "C4'" "C3'" sing N N 179 U "C4'" "H4'" sing N N 180 U "O4'" "C1'" sing N N 181 U "C3'" "O3'" sing N N 182 U "C3'" "C2'" sing N N 183 U "C3'" "H3'" sing N N 184 U "O3'" "HO3'" sing N N 185 U "C2'" "O2'" sing N N 186 U "C2'" "C1'" sing N N 187 U "C2'" "H2'" sing N N 188 U "O2'" "HO2'" sing N N 189 U "C1'" N1 sing N N 190 U "C1'" "H1'" sing N N 191 U N1 C2 sing N N 192 U N1 C6 sing N N 193 U C2 O2 doub N N 194 U C2 N3 sing N N 195 U N3 C4 sing N N 196 U N3 H3 sing N N 197 U C4 O4 doub N N 198 U C4 C5 sing N N 199 U C5 C6 doub N N 200 U C5 H5 sing N N 201 U C6 H6 sing N N 202 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4JRC 'double helix' 4JRC 'a-form double helix' 4JRC 'mismatched base pair' 4JRC 'internal loop' 4JRC 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A GTP 1 1_555 A C 57 1_555 -0.474 -0.162 -0.306 -4.381 -2.014 -24.488 1 A_GTP24:C80_A A 24 ? A 80 ? ? 1 1 A G 2 1_555 A C 56 1_555 -0.045 0.126 0.086 -4.966 -8.866 3.492 2 A_G25:C79_A A 25 ? A 79 ? 19 1 1 A A 3 1_555 A U 55 1_555 -0.063 -0.068 0.329 3.883 -15.374 -5.640 3 A_A26:U78_A A 26 ? A 78 ? 20 1 1 A A 4 1_555 A U 54 1_555 0.028 -0.051 0.038 2.878 -21.032 -2.448 4 A_A27:U77_A A 27 ? A 77 ? 20 1 1 A C 5 1_555 A G 53 1_555 0.887 0.182 0.253 0.253 -16.029 11.051 5 A_C28:G76_A A 28 ? A 76 ? ? 1 1 A C 6 1_555 A G 52 1_555 0.622 -0.112 0.475 -4.397 -20.051 3.521 6 A_C29:G75_A A 29 ? A 75 ? 19 1 1 A A 50 1_555 A U 10 1_555 0.262 0.137 -0.400 4.815 -18.057 2.090 7 A_A73:U33_A A 73 ? A 33 ? 20 1 1 A G 49 1_555 A C 11 1_555 -0.077 0.120 0.131 -5.685 -20.746 0.810 8 A_G72:C34_A A 72 ? A 34 ? 19 1 1 A A 48 1_555 A U 12 1_555 -0.042 0.278 0.215 0.942 -17.668 -2.338 9 A_A71:U35_A A 71 ? A 35 ? 20 1 1 A A 47 1_555 A U 13 1_555 -0.510 -0.066 0.275 1.616 -21.410 -2.833 10 A_A70:U36_A A 70 ? A 36 ? 20 1 1 A G 46 1_555 A C 14 1_555 -0.815 -0.030 0.447 -3.314 -15.403 4.247 11 A_G69:C37_A A 69 ? A 37 ? 19 1 1 A G 23 1_555 A U 45 1_555 -2.772 -0.546 0.456 5.946 -18.480 -4.177 12 A_G46:U68_A A 46 ? A 68 ? 28 1 1 A C 24 1_555 A G 44 1_555 0.136 -0.064 -0.268 10.422 -15.673 1.333 13 A_C47:G67_A A 47 ? A 67 ? 19 1 1 A C 25 1_555 A G 43 1_555 -0.168 0.051 -0.150 7.121 -2.893 7.000 14 A_C48:G66_A A 48 ? A 66 ? 19 1 1 A G 26 1_555 A C 42 1_555 -0.351 -0.156 -0.167 0.977 -5.989 1.474 15 A_G49:C65_A A 49 ? A 65 ? 19 1 1 A G 27 1_555 A C 41 1_555 -0.374 -0.127 -0.312 -1.426 -2.344 3.747 16 A_G50:C64_A A 50 ? A 64 ? 19 1 1 A G 28 1_555 A C 40 1_555 0.354 -0.333 -0.651 -9.800 -8.357 -7.724 17 A_G51:C63_A A 51 ? A 63 ? 19 1 1 A A 18 1_555 A A 22 1_555 4.563 1.075 0.609 4.513 14.386 -107.449 18 A_A41:A45_A A 41 ? A 45 ? 5 4 1 A U 34 1_555 A A 38 1_555 4.067 -2.291 0.342 5.696 14.002 -90.358 19 A_U57:A61_A A 57 ? A 61 ? 24 4 1 A G 21 1_555 A G 33 1_555 -2.047 -1.863 0.878 11.059 -13.758 124.723 20 A_G44:G56_A A 44 ? A 56 ? ? 2 1 A G 39 1_555 A C 20 1_555 -0.261 -0.172 -0.230 -17.298 -21.267 1.705 21 A_G62:C43_A A 62 ? A 43 ? 19 1 1 B C 20 1_555 B G 39 1_555 0.146 -0.123 -0.281 19.990 -23.686 3.026 22 B_C43:G62_B B 43 ? B 62 ? 19 1 1 B G 21 1_555 B G 33 1_555 -2.043 -1.955 0.925 11.993 -10.875 125.104 23 B_G44:G56_B B 44 ? B 56 ? ? 2 1 B A 38 1_555 B U 34 1_555 -4.236 -2.530 0.338 -2.988 13.829 -91.138 24 B_A61:U57_B B 61 ? B 57 ? 24 4 1 B A 22 1_555 B A 18 1_555 -4.217 1.094 0.630 -8.235 11.054 -106.754 25 B_A45:A41_B B 45 ? B 41 ? 5 4 1 B GTP 1 1_555 B C 57 1_555 -0.032 -0.051 0.456 -1.969 4.593 -14.987 26 B_GTP24:C80_B B 24 ? B 80 ? ? 1 1 B G 2 1_555 B C 56 1_555 -0.895 0.070 0.343 -1.352 -9.751 -0.766 27 B_G25:C79_B B 25 ? B 79 ? 19 1 1 B A 3 1_555 B U 55 1_555 -1.014 -0.099 0.054 -0.985 -19.116 -10.370 28 B_A26:U78_B B 26 ? B 78 ? 20 1 1 B A 4 1_555 B U 54 1_555 0.103 0.273 0.111 -1.708 -17.986 -0.255 29 B_A27:U77_B B 27 ? B 77 ? 20 1 1 B C 5 1_555 B G 53 1_555 0.047 0.553 0.329 6.277 -12.896 3.427 30 B_C28:G76_B B 28 ? B 76 ? ? ? 1 B C 6 1_555 B G 52 1_555 -0.432 -0.031 -0.287 6.251 -29.120 -12.974 31 B_C29:G75_B B 29 ? B 75 ? ? 1 1 B U 10 1_555 B A 50 1_555 0.002 0.075 0.124 -5.160 -16.735 3.793 32 B_U33:A73_B B 33 ? B 73 ? 20 1 1 B C 11 1_555 B G 49 1_555 0.591 -0.124 0.407 5.138 -21.145 3.444 33 B_C34:G72_B B 34 ? B 72 ? 19 1 1 B U 12 1_555 B A 48 1_555 0.103 0.192 0.322 2.889 -21.440 6.204 34 B_U35:A71_B B 35 ? B 71 ? ? ? 1 B U 13 1_555 B A 47 1_555 0.365 -0.114 0.057 -0.580 -24.858 -1.795 35 B_U36:A70_B B 36 ? B 70 ? 20 1 1 B C 14 1_555 B G 46 1_555 0.125 0.192 0.262 4.715 -19.023 4.916 36 B_C37:G69_B B 37 ? B 69 ? 19 1 1 B G 23 1_555 B U 45 1_555 -3.036 -0.725 0.251 0.744 -18.271 -6.018 37 B_G46:U68_B B 46 ? B 68 ? 28 1 1 B C 24 1_555 B G 44 1_555 -0.435 0.139 -0.346 9.718 -9.631 4.121 38 B_C47:G67_B B 47 ? B 67 ? 19 1 1 B C 25 1_555 B G 43 1_555 -0.111 0.098 -0.429 3.251 -5.181 4.590 39 B_C48:G66_B B 48 ? B 66 ? 19 1 1 B G 26 1_555 B C 42 1_555 0.080 -0.092 0.029 -4.497 -2.432 2.589 40 B_G49:C65_B B 49 ? B 65 ? 19 1 1 B G 27 1_555 B C 41 1_555 0.004 -0.258 -0.281 -3.122 -8.930 1.123 41 B_G50:C64_B B 50 ? B 64 ? 19 1 1 B G 28 1_555 B C 40 1_555 0.857 0.010 -0.593 -11.974 -10.660 -2.308 42 B_G51:C63_B B 51 ? B 63 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A GTP 1 1_555 A C 57 1_555 A G 2 1_555 A C 56 1_555 0.792 -1.252 3.219 -4.586 8.573 42.411 -2.468 -1.485 2.830 11.667 6.242 43.461 1 AA_GTP24G25:C79C80_AA A 24 ? A 80 ? A 25 ? A 79 ? 1 A G 2 1_555 A C 56 1_555 A A 3 1_555 A U 55 1_555 -0.635 -1.202 2.952 -2.195 3.712 32.051 -2.741 0.796 2.834 6.685 3.953 32.332 2 AA_G25A26:U78C79_AA A 25 ? A 79 ? A 26 ? A 78 ? 1 A A 3 1_555 A U 55 1_555 A A 4 1_555 A U 54 1_555 0.189 -1.202 3.223 2.186 4.894 35.122 -2.659 -0.002 3.039 8.051 -3.597 35.516 3 AA_A26A27:U77U78_AA A 26 ? A 78 ? A 27 ? A 77 ? 1 A A 4 1_555 A U 54 1_555 A C 5 1_555 A G 53 1_555 1.125 -1.236 3.228 0.674 7.896 37.023 -2.873 -1.653 2.932 12.263 -1.047 37.832 4 AA_A27C28:G76U77_AA A 27 ? A 77 ? A 28 ? A 76 ? 1 A C 5 1_555 A G 53 1_555 A C 6 1_555 A G 52 1_555 -0.082 -1.359 3.341 2.546 4.139 33.962 -2.951 0.537 3.144 7.041 -4.332 34.298 5 AA_C28C29:G75G76_AA A 28 ? A 76 ? A 29 ? A 75 ? 1 A C 6 1_555 A G 52 1_555 A A 50 1_555 A U 10 1_555 -0.403 -6.239 -0.092 -94.968 -128.026 4.443 -1.149 -1.294 5.243 -71.960 53.379 159.420 6 AA_C29A73:U33G75_AA A 29 ? A 75 ? A 73 ? A 33 ? 1 A A 50 1_555 A U 10 1_555 A G 49 1_555 A C 11 1_555 0.102 1.066 -3.082 -6.733 -10.384 -34.618 -2.966 0.987 -2.602 16.801 -10.893 -36.700 7 AA_A73G72:C34U33_AA A 73 ? A 33 ? A 72 ? A 34 ? 1 A G 49 1_555 A C 11 1_555 A A 48 1_555 A U 12 1_555 -0.842 1.866 -3.425 -3.906 -7.295 -27.796 -5.331 -0.826 -2.939 14.775 -7.912 -28.979 8 AA_G72A71:U35C34_AA A 72 ? A 34 ? A 71 ? A 35 ? 1 A A 48 1_555 A U 12 1_555 A A 47 1_555 A U 13 1_555 0.090 1.121 -3.282 -2.506 -6.468 -37.924 -2.480 0.439 -3.046 9.851 -3.818 -38.530 9 AA_A71A70:U36U35_AA A 71 ? A 35 ? A 70 ? A 36 ? 1 A A 47 1_555 A U 13 1_555 A G 46 1_555 A C 14 1_555 0.050 1.176 -3.072 0.547 -9.054 -32.611 -3.328 0.007 -2.660 15.748 0.951 -33.816 10 AA_A70G69:C37U36_AA A 70 ? A 36 ? A 69 ? A 37 ? 1 A G 46 1_555 A C 14 1_555 A G 23 1_555 A U 45 1_555 -1.903 2.889 2.859 -167.143 4.939 -153.900 -1.454 -1.247 2.340 -2.475 -83.735 -177.119 11 AA_G69G46:U68C37_AA A 69 ? A 37 ? A 46 ? A 68 ? 1 A G 23 1_555 A U 45 1_555 A C 24 1_555 A G 44 1_555 0.451 -1.498 3.134 3.568 9.449 41.038 -2.969 -0.290 2.767 13.237 -4.999 42.211 12 AA_G46C47:G67U68_AA A 46 ? A 68 ? A 47 ? A 67 ? 1 A C 24 1_555 A G 44 1_555 A C 25 1_555 A G 43 1_555 0.334 -1.962 3.294 -1.791 7.532 29.843 -5.063 -0.955 2.706 14.324 3.407 30.809 13 AA_C47C48:G66G67_AA A 47 ? A 67 ? A 48 ? A 66 ? 1 A C 25 1_555 A G 43 1_555 A G 26 1_555 A C 42 1_555 -0.559 -1.908 3.341 -0.494 8.383 27.123 -5.706 1.033 2.653 17.355 1.023 28.370 14 AA_C48G49:C65G66_AA A 48 ? A 66 ? A 49 ? A 65 ? 1 A G 26 1_555 A C 42 1_555 A G 27 1_555 A C 41 1_555 0.187 -1.686 3.241 -1.353 9.987 30.919 -4.612 -0.550 2.576 18.138 2.457 32.482 15 AA_G49G50:C64C65_AA A 49 ? A 65 ? A 50 ? A 64 ? 1 A G 27 1_555 A C 41 1_555 A G 28 1_555 A C 40 1_555 -0.528 -1.654 3.525 2.920 9.477 37.569 -3.661 1.156 2.988 14.411 -4.440 38.810 16 AA_G50G51:C63C64_AA A 50 ? A 64 ? A 51 ? A 63 ? 1 A A 18 1_555 A A 22 1_555 A U 34 1_555 A A 38 1_555 3.015 -1.403 1.278 -79.366 -153.238 25.870 -0.197 -1.772 0.150 -79.178 41.008 172.760 17 AA_A41U57:A61A45_AA A 41 ? A 45 ? A 57 ? A 61 ? 1 A U 34 1_555 A A 38 1_555 A G 21 1_555 A G 33 1_555 2.284 -0.801 -3.261 -5.324 -9.838 -10.025 -4.669 12.929 -1.897 42.446 -22.968 -15.010 18 AA_U57G44:G56A61_AA A 57 ? A 61 ? A 44 ? A 56 ? 1 A G 21 1_555 A G 33 1_555 A G 39 1_555 A C 20 1_555 -1.546 -3.993 -1.962 174.301 24.867 98.701 -1.871 -0.109 -2.853 12.501 -87.620 177.437 19 AA_G44G62:C43G56_AA A 44 ? A 56 ? A 62 ? A 43 ? 1 A G 39 1_555 A C 20 1_555 B C 20 1_555 B G 39 1_555 0.130 -3.735 2.879 -0.114 -7.226 132.161 -1.997 -0.072 2.982 -3.952 0.062 132.262 20 AB_G62C43:G62C43_BA A 62 ? A 43 ? B 43 ? B 62 ? 1 B C 20 1_555 B G 39 1_555 B G 21 1_555 B G 33 1_555 2.788 0.539 3.754 1.332 1.289 -16.308 -2.876 10.787 3.464 -4.526 4.675 -16.412 21 BB_C43G44:G56G62_BB B 43 ? B 62 ? B 44 ? B 56 ? 1 B G 21 1_555 B G 33 1_555 B A 38 1_555 B U 34 1_555 -0.121 -3.424 2.345 -165.363 -18.900 117.009 -1.642 -0.583 2.268 -9.563 83.667 172.928 22 BB_G44A61:U57G56_BB B 44 ? B 56 ? B 61 ? B 57 ? 1 B A 38 1_555 B U 34 1_555 B A 22 1_555 B A 18 1_555 -2.926 -1.306 1.525 81.698 -152.744 39.858 -0.087 1.768 0.306 -78.341 -41.902 173.627 23 BB_A61A45:A41U57_BB B 61 ? B 57 ? B 45 ? B 41 ? 1 B GTP 1 1_555 B C 57 1_555 B G 2 1_555 B C 56 1_555 0.622 -1.539 3.329 -1.680 3.363 32.273 -3.334 -1.403 3.121 6.025 3.010 32.486 24 BB_GTP24G25:C79C80_BB B 24 ? B 80 ? B 25 ? B 79 ? 1 B G 2 1_555 B C 56 1_555 B A 3 1_555 B U 55 1_555 -0.584 -1.618 3.320 -0.250 0.589 31.547 -3.086 1.027 3.295 1.084 0.460 31.553 25 BB_G25A26:U78C79_BB B 25 ? B 79 ? B 26 ? B 78 ? 1 B A 3 1_555 B U 55 1_555 B A 4 1_555 B U 54 1_555 0.217 -1.282 3.225 -0.741 7.383 40.903 -2.554 -0.380 2.955 10.460 1.051 41.542 26 BB_A26A27:U77U78_BB B 26 ? B 78 ? B 27 ? B 77 ? 1 B A 4 1_555 B U 54 1_555 B C 5 1_555 B G 53 1_555 0.408 -1.289 2.965 -0.757 6.047 31.517 -3.276 -0.856 2.668 11.005 1.377 32.086 27 BB_A27C28:G76U77_BB B 27 ? B 77 ? B 28 ? B 76 ? 1 B C 5 1_555 B G 53 1_555 B C 6 1_555 B G 52 1_555 -0.366 -1.873 3.102 7.036 3.366 31.159 -3.937 1.809 2.744 6.146 -12.847 32.097 28 BB_C28C29:G75G76_BB B 28 ? B 76 ? B 29 ? B 75 ? 1 B C 6 1_555 B G 52 1_555 B U 10 1_555 B A 50 1_555 -4.632 -0.985 4.470 23.573 8.206 112.212 -0.704 3.095 3.748 4.908 -14.100 114.022 29 BB_C29U33:A73G75_BB B 29 ? B 75 ? B 33 ? B 73 ? 1 B U 10 1_555 B A 50 1_555 B C 11 1_555 B G 49 1_555 0.265 -1.180 2.899 -3.671 9.751 36.201 -2.892 -0.811 2.473 15.307 5.762 37.623 30 BB_U33C34:G72A73_BB B 33 ? B 73 ? B 34 ? B 72 ? 1 B C 11 1_555 B G 49 1_555 B U 12 1_555 B A 48 1_555 -0.577 -1.839 3.345 -0.665 4.285 24.752 -5.462 1.134 3.002 9.899 1.536 25.123 31 BB_C34U35:A71G72_BB B 34 ? B 72 ? B 35 ? B 71 ? 1 B U 12 1_555 B A 48 1_555 B U 13 1_555 B A 47 1_555 -0.348 -1.191 3.238 -0.955 9.448 36.645 -2.991 0.421 2.862 14.725 1.488 37.814 32 BB_U35U36:A70A71_BB B 35 ? B 71 ? B 36 ? B 70 ? 1 B U 13 1_555 B A 47 1_555 B C 14 1_555 B G 46 1_555 0.064 -1.068 3.076 -0.038 11.525 31.354 -3.557 -0.118 2.536 20.478 0.067 33.355 33 BB_U36C37:G69A70_BB B 36 ? B 70 ? B 37 ? B 69 ? 1 B C 14 1_555 B G 46 1_555 B G 23 1_555 B U 45 1_555 2.317 -2.636 3.189 1.644 9.874 4.286 -22.143 -10.841 -0.783 65.971 -10.982 10.887 34 BB_C37G46:U68G69_BB B 37 ? B 69 ? B 46 ? B 68 ? 1 B G 23 1_555 B U 45 1_555 B C 24 1_555 B G 44 1_555 0.941 -1.660 3.102 3.247 5.704 38.463 -3.124 -1.047 2.903 8.582 -4.886 38.999 35 BB_G46C47:G67U68_BB B 46 ? B 68 ? B 47 ? B 67 ? 1 B C 24 1_555 B G 44 1_555 B C 25 1_555 B G 43 1_555 0.049 -1.690 3.314 -0.124 10.358 32.306 -4.459 -0.103 2.661 18.045 0.217 33.884 36 BB_C47C48:G66G67_BB B 47 ? B 67 ? B 48 ? B 66 ? 1 B C 25 1_555 B G 43 1_555 B G 26 1_555 B C 42 1_555 -0.575 -1.837 3.461 -5.108 9.255 29.076 -5.226 0.099 2.816 17.713 9.776 30.899 37 BB_C48G49:C65G66_BB B 48 ? B 66 ? B 49 ? B 65 ? 1 B G 26 1_555 B C 42 1_555 B G 27 1_555 B C 41 1_555 -0.308 -1.694 3.147 1.174 10.175 31.833 -4.437 0.707 2.490 17.979 -2.074 33.400 38 BB_G49G50:C64C65_BB B 49 ? B 65 ? B 50 ? B 64 ? 1 B G 27 1_555 B C 41 1_555 B G 28 1_555 B C 40 1_555 -0.108 -1.636 3.486 2.176 10.813 36.249 -3.908 0.445 2.887 16.904 -3.403 37.836 39 BB_G50G51:C63C64_BB B 50 ? B 64 ? B 51 ? B 63 ? # _atom_sites.entry_id 4JRC _atom_sites.fract_transf_matrix[1][1] 0.008587 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002586 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024090 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011551 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C MG N O P # loop_