HEADER TRANSFERASE 22-MAR-13 4JST TITLE STRUCTURE OF CLOSTRIDIUM THERMOCELLUM POLYNUCLEOTIDE KINASE BOUND TO TITLE 2 UTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: METALLOPHOSPHOESTERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.1.78; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM THERMOCELLUM; SOURCE 3 ORGANISM_TAXID: 203119; SOURCE 4 STRAIN: ATCC 27405 / DSM 1237; SOURCE 5 GENE: CTHE_2768; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RNA REPAIR, P-LOOP PHOSPHOTRANSFERASE, POLYNUCLEOTIDE KINASE, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR U.DAS,L.K.WANG,P.SMITH,S.SHUMAN REVDAT 3 06-NOV-24 4JST 1 REMARK SEQADV LINK REVDAT 2 18-DEC-13 4JST 1 JRNL REVDAT 1 28-AUG-13 4JST 0 JRNL AUTH U.DAS,L.K.WANG,P.SMITH,S.SHUMAN JRNL TITL STRUCTURAL AND BIOCHEMICAL ANALYSIS OF THE PHOSPHATE DONOR JRNL TITL 2 SPECIFICITY OF THE POLYNUCLEOTIDE KINASE COMPONENT OF THE JRNL TITL 3 BACTERIAL PNKPHEN1 RNA REPAIR SYSTEM. JRNL REF BIOCHEMISTRY V. 52 4734 2013 JRNL REFN ISSN 0006-2960 JRNL PMID 23721485 JRNL DOI 10.1021/BI400412X REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 24105 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.890 REMARK 3 FREE R VALUE TEST SET COUNT : 1901 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.5489 - 4.8909 1.00 1725 147 0.1581 0.1966 REMARK 3 2 4.8909 - 3.8828 1.00 1630 140 0.1318 0.1529 REMARK 3 3 3.8828 - 3.3922 1.00 1613 138 0.1608 0.2180 REMARK 3 4 3.3922 - 3.0821 1.00 1596 137 0.1713 0.2462 REMARK 3 5 3.0821 - 2.8612 1.00 1590 136 0.1847 0.2209 REMARK 3 6 2.8612 - 2.6926 1.00 1574 134 0.1781 0.2233 REMARK 3 7 2.6926 - 2.5577 1.00 1569 134 0.1900 0.2619 REMARK 3 8 2.5577 - 2.4464 1.00 1569 134 0.1871 0.2423 REMARK 3 9 2.4464 - 2.3522 1.00 1580 137 0.1821 0.2821 REMARK 3 10 2.3522 - 2.2711 1.00 1549 133 0.1890 0.2945 REMARK 3 11 2.2711 - 2.2000 1.00 1574 135 0.1892 0.2728 REMARK 3 12 2.2000 - 2.1372 1.00 1546 131 0.1890 0.2441 REMARK 3 13 2.1372 - 2.0809 1.00 1551 132 0.2064 0.2653 REMARK 3 14 2.0809 - 2.0300 0.99 1538 133 0.1939 0.2728 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 1.00 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2867 REMARK 3 ANGLE : 1.260 3881 REMARK 3 CHIRALITY : 0.072 439 REMARK 3 PLANARITY : 0.005 491 REMARK 3 DIHEDRAL : 17.189 1117 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JST COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000078459. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 130 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24709 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 46.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -999.00 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: DIRECT REFINEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM SODIUM CITRATE, 100MM MGCL2, 16 REMARK 280 -18% PEG 3350, 2MM UTP, PH 5.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.65300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.77300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.39050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.77300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.65300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.39050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 96 O HOH A 384 2.08 REMARK 500 O HOH B 393 O HOH B 410 2.16 REMARK 500 OD2 ASP A 38 NH2 ARG A 123 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 122 -71.41 -61.31 REMARK 500 ASN B 49 23.02 -79.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 22 OG REMARK 620 2 UTP A 202 O2G 177.1 REMARK 620 3 UTP A 202 O2B 90.2 92.5 REMARK 620 4 HOH A 306 O 91.5 87.0 96.6 REMARK 620 5 HOH A 308 O 91.1 90.3 86.8 175.7 REMARK 620 6 HOH A 316 O 87.2 90.2 175.1 87.6 89.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 22 OG REMARK 620 2 UTP B 202 O3G 167.1 REMARK 620 3 UTP B 202 O2B 86.5 93.5 REMARK 620 4 HOH B 301 O 87.3 90.8 170.3 REMARK 620 5 HOH B 302 O 97.8 95.1 92.2 96.1 REMARK 620 6 HOH B 303 O 78.9 88.2 87.4 84.0 176.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 203 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 317 O REMARK 620 2 HOH B 391 O 106.9 REMARK 620 3 HOH B 405 O 79.3 73.0 REMARK 620 4 HOH B 428 O 136.5 107.9 86.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UTP A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UTP B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JSY RELATED DB: PDB REMARK 900 RELATED ID: 4JT2 RELATED DB: PDB REMARK 900 RELATED ID: 4JT4 RELATED DB: PDB REMARK 900 RELATED ID: 4GP7 RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED WITH ATP REMARK 900 RELATED ID: 4GP6 RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED WITH ADP DBREF 4JST A 1 170 UNP A3DJ38 A3DJ38_CLOTH 1 170 DBREF 4JST B 1 170 UNP A3DJ38 A3DJ38_CLOTH 1 170 SEQADV 4JST SER A 0 UNP A3DJ38 EXPRESSION TAG SEQADV 4JST MSE A 44 UNP A3DJ38 VAL 44 ENGINEERED MUTATION SEQADV 4JST MSE A 137 UNP A3DJ38 LEU 137 ENGINEERED MUTATION SEQADV 4JST SER B 0 UNP A3DJ38 EXPRESSION TAG SEQADV 4JST MSE B 44 UNP A3DJ38 VAL 44 ENGINEERED MUTATION SEQADV 4JST MSE B 137 UNP A3DJ38 LEU 137 ENGINEERED MUTATION SEQRES 1 A 171 SER MSE LYS LEU THR ILE PRO GLU LEU SER LEU VAL VAL SEQRES 2 A 171 LEU ILE GLY SER SER GLY SER GLY LYS SER THR PHE ALA SEQRES 3 A 171 LYS LYS HIS PHE LYS PRO THR GLU VAL ILE SER SER ASP SEQRES 4 A 171 PHE CYS ARG GLY LEU MSE SER ASP ASP GLU ASN ASP GLN SEQRES 5 A 171 THR VAL THR GLY ALA ALA PHE ASP VAL LEU HIS TYR ILE SEQRES 6 A 171 VAL SER LYS ARG LEU GLN LEU GLY LYS LEU THR VAL VAL SEQRES 7 A 171 ASP ALA THR ASN VAL GLN GLU SER ALA ARG LYS PRO LEU SEQRES 8 A 171 ILE GLU ILE ALA LYS ASP TYR HIS CYS PHE PRO VAL ALA SEQRES 9 A 171 VAL VAL PHE ASN LEU PRO GLU LYS VAL CYS GLN GLU ARG SEQRES 10 A 171 ASN LYS ASN ARG THR ASP ARG GLN VAL GLU GLU TYR VAL SEQRES 11 A 171 ILE ARG LYS HIS THR GLN GLN MSE LYS LYS SER ILE LYS SEQRES 12 A 171 GLY LEU GLN ARG GLU GLY PHE ARG TYR VAL TYR ILE LEU SEQRES 13 A 171 ASN SER PRO GLU GLU VAL GLU GLU VAL VAL PHE GLU ARG SEQRES 14 A 171 GLN PRO SEQRES 1 B 171 SER MSE LYS LEU THR ILE PRO GLU LEU SER LEU VAL VAL SEQRES 2 B 171 LEU ILE GLY SER SER GLY SER GLY LYS SER THR PHE ALA SEQRES 3 B 171 LYS LYS HIS PHE LYS PRO THR GLU VAL ILE SER SER ASP SEQRES 4 B 171 PHE CYS ARG GLY LEU MSE SER ASP ASP GLU ASN ASP GLN SEQRES 5 B 171 THR VAL THR GLY ALA ALA PHE ASP VAL LEU HIS TYR ILE SEQRES 6 B 171 VAL SER LYS ARG LEU GLN LEU GLY LYS LEU THR VAL VAL SEQRES 7 B 171 ASP ALA THR ASN VAL GLN GLU SER ALA ARG LYS PRO LEU SEQRES 8 B 171 ILE GLU ILE ALA LYS ASP TYR HIS CYS PHE PRO VAL ALA SEQRES 9 B 171 VAL VAL PHE ASN LEU PRO GLU LYS VAL CYS GLN GLU ARG SEQRES 10 B 171 ASN LYS ASN ARG THR ASP ARG GLN VAL GLU GLU TYR VAL SEQRES 11 B 171 ILE ARG LYS HIS THR GLN GLN MSE LYS LYS SER ILE LYS SEQRES 12 B 171 GLY LEU GLN ARG GLU GLY PHE ARG TYR VAL TYR ILE LEU SEQRES 13 B 171 ASN SER PRO GLU GLU VAL GLU GLU VAL VAL PHE GLU ARG SEQRES 14 B 171 GLN PRO MODRES 4JST MSE A 1 MET SELENOMETHIONINE MODRES 4JST MSE A 44 MET SELENOMETHIONINE MODRES 4JST MSE A 137 MET SELENOMETHIONINE MODRES 4JST MSE B 1 MET SELENOMETHIONINE MODRES 4JST MSE B 44 MET SELENOMETHIONINE MODRES 4JST MSE B 137 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 44 8 HET MSE A 137 8 HET MSE B 1 8 HET MSE B 44 8 HET MSE B 137 8 HET MG A 201 1 HET UTP A 202 29 HET MG B 201 1 HET UTP B 202 29 HET NA B 203 1 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION HETNAM UTP URIDINE 5'-TRIPHOSPHATE HETNAM NA SODIUM ION FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 MG 2(MG 2+) FORMUL 4 UTP 2(C9 H15 N2 O15 P3) FORMUL 7 NA NA 1+ FORMUL 8 HOH *266(H2 O) HELIX 1 1 GLY A 20 PHE A 29 1 10 HELIX 2 2 LYS A 30 THR A 32 5 3 HELIX 3 3 SER A 37 SER A 45 1 9 HELIX 4 4 ASP A 50 THR A 52 5 3 HELIX 5 5 VAL A 53 LEU A 71 1 19 HELIX 6 6 GLN A 83 TYR A 97 1 15 HELIX 7 7 PRO A 109 ARG A 120 1 12 HELIX 8 8 GLU A 126 ILE A 141 1 16 HELIX 9 9 GLY A 143 GLY A 148 1 6 HELIX 10 10 SER A 157 GLU A 163 1 7 HELIX 11 11 GLY B 20 PHE B 29 1 10 HELIX 12 12 LYS B 30 THR B 32 5 3 HELIX 13 13 SER B 37 SER B 45 1 9 HELIX 14 14 VAL B 53 LEU B 71 1 19 HELIX 15 15 GLN B 83 TYR B 97 1 15 HELIX 16 16 PRO B 109 ASN B 119 1 11 HELIX 17 17 GLU B 126 ILE B 141 1 16 HELIX 18 18 GLY B 143 GLY B 148 1 6 HELIX 19 19 SER B 157 GLU B 163 1 7 SHEET 1 A 2 MSE A 1 PRO A 6 0 SHEET 2 A 2 VAL A 164 GLN A 169 1 O VAL A 165 N LEU A 3 SHEET 1 B 5 VAL A 34 SER A 36 0 SHEET 2 B 5 THR A 75 ASP A 78 1 O VAL A 76 N ILE A 35 SHEET 3 B 5 SER A 9 ILE A 14 1 N VAL A 11 O THR A 75 SHEET 4 B 5 PHE A 100 PHE A 106 1 O VAL A 102 N VAL A 12 SHEET 5 B 5 TYR A 151 LEU A 155 1 O TYR A 153 N ALA A 103 SHEET 1 C 2 MSE B 1 THR B 4 0 SHEET 2 C 2 VAL B 164 GLU B 167 1 O VAL B 165 N LEU B 3 SHEET 1 D 5 VAL B 34 SER B 36 0 SHEET 2 D 5 THR B 75 ASP B 78 1 O VAL B 76 N ILE B 35 SHEET 3 D 5 SER B 9 ILE B 14 1 N VAL B 11 O THR B 75 SHEET 4 D 5 PHE B 100 PHE B 106 1 O VAL B 102 N VAL B 12 SHEET 5 D 5 TYR B 151 LEU B 155 1 O LEU B 155 N VAL B 105 LINK C SER A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N LYS A 2 1555 1555 1.32 LINK C LEU A 43 N MSE A 44 1555 1555 1.33 LINK C MSE A 44 N SER A 45 1555 1555 1.33 LINK C GLN A 136 N MSE A 137 1555 1555 1.33 LINK C MSE A 137 N LYS A 138 1555 1555 1.32 LINK C SER B 0 N MSE B 1 1555 1555 1.32 LINK C MSE B 1 N LYS B 2 1555 1555 1.33 LINK C LEU B 43 N MSE B 44 1555 1555 1.32 LINK C MSE B 44 N SER B 45 1555 1555 1.33 LINK C GLN B 136 N MSE B 137 1555 1555 1.33 LINK C MSE B 137 N LYS B 138 1555 1555 1.33 LINK OG SER A 22 MG MG A 201 1555 1555 2.08 LINK MG MG A 201 O2G UTP A 202 1555 1555 1.95 LINK MG MG A 201 O2B UTP A 202 1555 1555 2.01 LINK MG MG A 201 O HOH A 306 1555 1555 2.04 LINK MG MG A 201 O HOH A 308 1555 1555 2.10 LINK MG MG A 201 O HOH A 316 1555 1555 2.17 LINK OG SER B 22 MG MG B 201 1555 1555 2.18 LINK MG MG B 201 O3G UTP B 202 1555 1555 1.98 LINK MG MG B 201 O2B UTP B 202 1555 1555 2.00 LINK MG MG B 201 O HOH B 301 1555 1555 2.10 LINK MG MG B 201 O HOH B 302 1555 1555 2.11 LINK MG MG B 201 O HOH B 303 1555 1555 2.05 LINK NA NA B 203 O HOH B 317 1555 1555 3.01 LINK NA NA B 203 O HOH B 391 1555 1555 2.86 LINK NA NA B 203 O HOH B 405 1555 1555 2.98 LINK NA NA B 203 O HOH B 428 1555 1555 3.09 SITE 1 AC1 5 SER A 22 UTP A 202 HOH A 306 HOH A 308 SITE 2 AC1 5 HOH A 316 SITE 1 AC2 22 SER A 16 SER A 17 GLY A 18 SER A 19 SITE 2 AC2 22 GLY A 20 LYS A 21 SER A 22 THR A 23 SITE 3 AC2 22 ASP A 38 ARG A 116 ARG A 120 ARG A 123 SITE 4 AC2 22 MG A 201 HOH A 306 HOH A 308 HOH A 316 SITE 5 AC2 22 HOH A 321 HOH A 363 HOH A 369 HOH A 410 SITE 6 AC2 22 HOH A 426 HOH A 432 SITE 1 AC3 5 SER B 22 UTP B 202 HOH B 301 HOH B 302 SITE 2 AC3 5 HOH B 303 SITE 1 AC4 22 SER B 16 SER B 17 GLY B 18 SER B 19 SITE 2 AC4 22 GLY B 20 LYS B 21 SER B 22 THR B 23 SITE 3 AC4 22 ARG B 116 ARG B 120 MG B 201 HOH B 301 SITE 4 AC4 22 HOH B 302 HOH B 303 HOH B 329 HOH B 332 SITE 5 AC4 22 HOH B 335 HOH B 347 HOH B 350 HOH B 361 SITE 6 AC4 22 HOH B 376 HOH B 399 SITE 1 AC5 5 PHE B 24 HOH B 317 HOH B 391 HOH B 405 SITE 2 AC5 5 HOH B 428 CRYST1 45.306 66.781 119.546 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022072 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014974 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008365 0.00000