HEADER RNA BINDING PROTEIN 25-MAR-13 4JUV TITLE CRYSTAL STRUCTURE OF ESCHERICHIA COLI HFQ DISTAL FACE 1 MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN HFQ; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 SYNONYM: HF-1, HOST FACTOR-I PROTEIN, HF-I; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: HFQ, B4172, JW4130 KEYWDS HFQ, RIBOREGULATOR, POST-TRANSCRIPTIONAL REGULATOR, RNA BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.E.ROBINSON,J.ORANS REVDAT 4 28-FEB-24 4JUV 1 SEQADV REVDAT 3 15-NOV-17 4JUV 1 REMARK REVDAT 2 12-MAR-14 4JUV 1 JRNL REVDAT 1 11-DEC-13 4JUV 0 JRNL AUTH K.E.ROBINSON,J.ORANS,A.R.KOVACH,T.M.LINK,R.G.BRENNAN JRNL TITL MAPPING HFQ-RNA INTERACTION SURFACES USING TRYPTOPHAN JRNL TITL 2 FLUORESCENCE QUENCHING. JRNL REF NUCLEIC ACIDS RES. V. 42 2736 2014 JRNL REFN ISSN 0305-1048 JRNL PMID 24288369 JRNL DOI 10.1093/NAR/GKT1171 REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 18462 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.264 REMARK 3 R VALUE (WORKING SET) : 0.264 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.19 REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : 1184 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 0 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3049 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 75 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.60000 REMARK 3 B22 (A**2) : 0.28000 REMARK 3 B33 (A**2) : -4.88000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.23000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.427 REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3129 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4254 ; 1.311 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 378 ; 6.025 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;31.687 ;23.750 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 562 ;16.282 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;13.945 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 505 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2300 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JUV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000078533. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18462 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.190 REMARK 200 RESOLUTION RANGE LOW (A) : 44.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04100 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.57400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 465 GLY A 4 REMARK 465 GLN A 5 REMARK 465 SER A 69 REMARK 465 ALA B 2 REMARK 465 LYS B 3 REMARK 465 SER B 69 REMARK 465 ALA C 2 REMARK 465 LYS C 3 REMARK 465 GLY C 4 REMARK 465 VAL C 68 REMARK 465 SER C 69 REMARK 465 ALA D 2 REMARK 465 LYS D 3 REMARK 465 GLY D 4 REMARK 465 GLN D 5 REMARK 465 SER D 69 REMARK 465 ALA E 2 REMARK 465 LYS E 3 REMARK 465 GLY E 4 REMARK 465 GLN E 5 REMARK 465 SER E 69 REMARK 465 ALA F 2 REMARK 465 LYS F 3 REMARK 465 GLY F 4 REMARK 465 VAL F 68 REMARK 465 SER F 69 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN C 5 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG ARG E 66 O HOH E 107 1.10 REMARK 500 CE LYS D 31 NE2 GLN D 33 1.49 REMARK 500 CE LYS A 31 NE2 GLN A 33 1.57 REMARK 500 CE LYS A 47 OG SER A 51 1.60 REMARK 500 O HOH C 104 O HOH C 114 1.92 REMARK 500 O HOH C 114 O HOH D 109 2.09 REMARK 500 O LEU F 26 O HOH F 116 2.11 REMARK 500 CB ARG E 66 O HOH E 107 2.16 REMARK 500 O SER D 51 O HOH D 111 2.16 REMARK 500 CD LYS A 47 OG SER A 51 2.17 REMARK 500 O LEU C 26 O HOH C 112 2.18 REMARK 500 CE LYS C 47 O HOH C 111 2.19 REMARK 500 CB PRO A 21 O HOH A 107 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN B 5 CH2 TRP B 25 1455 1.66 REMARK 500 NH2 ARG A 19 NH1 ARG E 17 2546 1.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN C 5 C SER C 6 N 0.243 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN C 5 O - C - N ANGL. DEV. = -15.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 40 -156.31 -137.42 REMARK 500 ASN A 48 -154.49 -123.51 REMARK 500 SER B 6 -49.40 -29.09 REMARK 500 ASP B 40 -157.34 -134.30 REMARK 500 ASN B 48 -113.19 -126.51 REMARK 500 PRO B 67 40.11 -59.62 REMARK 500 ASP C 40 -156.54 -128.60 REMARK 500 ASN C 48 -104.34 -143.57 REMARK 500 ASN C 48 -108.24 -141.88 REMARK 500 ASP D 40 -156.41 -137.11 REMARK 500 ASN D 48 -137.54 -123.80 REMARK 500 ASP E 40 -157.96 -127.64 REMARK 500 ASN E 48 -111.04 -126.15 REMARK 500 PRO E 67 81.26 -60.13 REMARK 500 ASP F 40 -156.21 -128.90 REMARK 500 ASN F 48 -108.70 -140.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLN C 5 -14.93 REMARK 500 ARG F 17 -14.62 REMARK 500 REMARK 500 REMARK: NULL DBREF 4JUV A 2 69 UNP P0A6X3 HFQ_ECOLI 2 69 DBREF 4JUV B 2 69 UNP P0A6X3 HFQ_ECOLI 2 69 DBREF 4JUV C 2 69 UNP P0A6X3 HFQ_ECOLI 2 69 DBREF 4JUV D 2 69 UNP P0A6X3 HFQ_ECOLI 2 69 DBREF 4JUV E 2 69 UNP P0A6X3 HFQ_ECOLI 2 69 DBREF 4JUV F 2 69 UNP P0A6X3 HFQ_ECOLI 2 69 SEQADV 4JUV TRP A 25 UNP P0A6X3 TYR 25 ENGINEERED MUTATION SEQADV 4JUV TRP B 25 UNP P0A6X3 TYR 25 ENGINEERED MUTATION SEQADV 4JUV TRP C 25 UNP P0A6X3 TYR 25 ENGINEERED MUTATION SEQADV 4JUV TRP D 25 UNP P0A6X3 TYR 25 ENGINEERED MUTATION SEQADV 4JUV TRP E 25 UNP P0A6X3 TYR 25 ENGINEERED MUTATION SEQADV 4JUV TRP F 25 UNP P0A6X3 TYR 25 ENGINEERED MUTATION SEQRES 1 A 68 ALA LYS GLY GLN SER LEU GLN ASP PRO PHE LEU ASN ALA SEQRES 2 A 68 LEU ARG ARG GLU ARG VAL PRO VAL SER ILE TRP LEU VAL SEQRES 3 A 68 ASN GLY ILE LYS LEU GLN GLY GLN ILE GLU SER PHE ASP SEQRES 4 A 68 GLN PHE VAL ILE LEU LEU LYS ASN THR VAL SER GLN MET SEQRES 5 A 68 VAL TYR LYS HIS ALA ILE SER THR VAL VAL PRO SER ARG SEQRES 6 A 68 PRO VAL SER SEQRES 1 B 68 ALA LYS GLY GLN SER LEU GLN ASP PRO PHE LEU ASN ALA SEQRES 2 B 68 LEU ARG ARG GLU ARG VAL PRO VAL SER ILE TRP LEU VAL SEQRES 3 B 68 ASN GLY ILE LYS LEU GLN GLY GLN ILE GLU SER PHE ASP SEQRES 4 B 68 GLN PHE VAL ILE LEU LEU LYS ASN THR VAL SER GLN MET SEQRES 5 B 68 VAL TYR LYS HIS ALA ILE SER THR VAL VAL PRO SER ARG SEQRES 6 B 68 PRO VAL SER SEQRES 1 C 68 ALA LYS GLY GLN SER LEU GLN ASP PRO PHE LEU ASN ALA SEQRES 2 C 68 LEU ARG ARG GLU ARG VAL PRO VAL SER ILE TRP LEU VAL SEQRES 3 C 68 ASN GLY ILE LYS LEU GLN GLY GLN ILE GLU SER PHE ASP SEQRES 4 C 68 GLN PHE VAL ILE LEU LEU LYS ASN THR VAL SER GLN MET SEQRES 5 C 68 VAL TYR LYS HIS ALA ILE SER THR VAL VAL PRO SER ARG SEQRES 6 C 68 PRO VAL SER SEQRES 1 D 68 ALA LYS GLY GLN SER LEU GLN ASP PRO PHE LEU ASN ALA SEQRES 2 D 68 LEU ARG ARG GLU ARG VAL PRO VAL SER ILE TRP LEU VAL SEQRES 3 D 68 ASN GLY ILE LYS LEU GLN GLY GLN ILE GLU SER PHE ASP SEQRES 4 D 68 GLN PHE VAL ILE LEU LEU LYS ASN THR VAL SER GLN MET SEQRES 5 D 68 VAL TYR LYS HIS ALA ILE SER THR VAL VAL PRO SER ARG SEQRES 6 D 68 PRO VAL SER SEQRES 1 E 68 ALA LYS GLY GLN SER LEU GLN ASP PRO PHE LEU ASN ALA SEQRES 2 E 68 LEU ARG ARG GLU ARG VAL PRO VAL SER ILE TRP LEU VAL SEQRES 3 E 68 ASN GLY ILE LYS LEU GLN GLY GLN ILE GLU SER PHE ASP SEQRES 4 E 68 GLN PHE VAL ILE LEU LEU LYS ASN THR VAL SER GLN MET SEQRES 5 E 68 VAL TYR LYS HIS ALA ILE SER THR VAL VAL PRO SER ARG SEQRES 6 E 68 PRO VAL SER SEQRES 1 F 68 ALA LYS GLY GLN SER LEU GLN ASP PRO PHE LEU ASN ALA SEQRES 2 F 68 LEU ARG ARG GLU ARG VAL PRO VAL SER ILE TRP LEU VAL SEQRES 3 F 68 ASN GLY ILE LYS LEU GLN GLY GLN ILE GLU SER PHE ASP SEQRES 4 F 68 GLN PHE VAL ILE LEU LEU LYS ASN THR VAL SER GLN MET SEQRES 5 F 68 VAL TYR LYS HIS ALA ILE SER THR VAL VAL PRO SER ARG SEQRES 6 F 68 PRO VAL SER FORMUL 7 HOH *75(H2 O) HELIX 1 1 LEU A 7 GLU A 18 1 12 HELIX 2 2 LEU B 7 GLU B 18 1 12 HELIX 3 3 LEU C 7 ARG C 19 1 13 HELIX 4 4 LEU D 7 GLU D 18 1 12 HELIX 5 5 LEU E 7 GLU E 18 1 12 HELIX 6 6 LEU F 7 ARG F 19 1 13 SHEET 1 A31 PRO A 21 VAL A 22 0 SHEET 2 A31 GLY A 34 PHE A 39 -1 O GLY A 34 N VAL A 22 SHEET 3 A31 VAL A 43 LYS A 47 -1 O LEU A 45 N SER A 38 SHEET 4 A31 SER A 51 TYR A 55 -1 O VAL A 54 N ILE A 44 SHEET 5 A31 ILE F 59 PRO F 64 -1 O VAL F 62 N MET A 53 SHEET 6 A31 PRO F 21 LEU F 26 -1 N SER F 23 O VAL F 63 SHEET 7 A31 LYS F 31 PHE F 39 -1 O GLY F 34 N VAL F 22 SHEET 8 A31 VAL F 43 LYS F 47 -1 O LYS F 47 N GLN F 35 SHEET 9 A31 SER F 51 TYR F 55 -1 O VAL F 54 N ILE F 44 SHEET 10 A31 ILE E 59 PRO E 64 -1 N VAL E 62 O MET F 53 SHEET 11 A31 VAL E 22 LEU E 26 -1 N SER E 23 O VAL E 63 SHEET 12 A31 LYS E 31 PHE E 39 -1 O LEU E 32 N ILE E 24 SHEET 13 A31 VAL E 43 LYS E 47 -1 O LYS E 47 N GLN E 35 SHEET 14 A31 SER E 51 TYR E 55 -1 O VAL E 54 N ILE E 44 SHEET 15 A31 ILE D 59 PRO D 64 -1 N SER D 60 O TYR E 55 SHEET 16 A31 PRO D 21 LEU D 26 -1 N SER D 23 O VAL D 63 SHEET 17 A31 LYS D 31 PHE D 39 -1 O LEU D 32 N ILE D 24 SHEET 18 A31 VAL D 43 LYS D 47 -1 O LEU D 45 N SER D 38 SHEET 19 A31 SER D 51 TYR D 55 -1 O GLN D 52 N LEU D 46 SHEET 20 A31 ILE C 59 PRO C 64 -1 N VAL C 62 O MET D 53 SHEET 21 A31 PRO C 21 LEU C 26 -1 N SER C 23 O VAL C 63 SHEET 22 A31 LYS C 31 PHE C 39 -1 O GLY C 34 N VAL C 22 SHEET 23 A31 VAL C 43 LYS C 47 -1 O LYS C 47 N GLN C 35 SHEET 24 A31 SER C 51 TYR C 55 -1 O GLN C 52 N LEU C 46 SHEET 25 A31 ILE B 59 PRO B 64 -1 N VAL B 62 O MET C 53 SHEET 26 A31 VAL B 22 LEU B 26 -1 N SER B 23 O VAL B 63 SHEET 27 A31 LYS B 31 PHE B 39 -1 O LEU B 32 N ILE B 24 SHEET 28 A31 VAL B 43 LYS B 47 -1 O LYS B 47 N GLN B 35 SHEET 29 A31 SER B 51 TYR B 55 -1 O VAL B 54 N ILE B 44 SHEET 30 A31 ILE A 59 VAL A 62 -1 N SER A 60 O TYR B 55 SHEET 31 A31 TRP A 25 LEU A 26 -1 N TRP A 25 O THR A 61 CRYST1 31.630 89.148 66.987 90.00 89.98 90.00 P 1 21 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.031616 0.000000 -0.000008 0.00000 SCALE2 0.000000 0.011217 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014928 0.00000