HEADER TRANSFERASE/ANTIBIOTIC 25-MAR-13 4JV3
TITLE CRYSTAL STRUCTURE OF BETA-KETOACYL SYNTHASE FROM BRUCELLA MELITENSIS
TITLE 2 IN COMPLEX WITH PLATENCIN
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: BETA-KETOACYL SYNTHASE;
COMPND 3 CHAIN: A;
COMPND 4 EC: 2.3.1.41;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: BRUCELLA MELITENSIS BIOVAR ABORTUS;
SOURCE 3 ORGANISM_TAXID: 359391;
SOURCE 4 STRAIN: 2308;
SOURCE 5 GENE: FABB, BAB1_2173;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: AVA0421
KEYWDS SSGCID, BETA-KETOACYL SYNTHASE, PLATENCIN, STRUCTURAL GENOMICS,
KEYWDS 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE,
KEYWDS 3 TRANSFERASE-ANTIBIOTIC COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID)
REVDAT 5 20-SEP-23 4JV3 1 REMARK
REVDAT 4 24-AUG-22 4JV3 1 JRNL REMARK SEQADV
REVDAT 3 21-AUG-19 4JV3 1 JRNL LINK
REVDAT 2 05-JUN-13 4JV3 1 JRNL TITLE
REVDAT 1 22-MAY-13 4JV3 0
JRNL AUTH E.I.PATTERSON,J.D.NANSON,J.ABENDROTH,C.BRYAN,B.SANKARAN,
JRNL AUTH 2 P.J.MYLER,J.K.FORWOOD
JRNL TITL STRUCTURAL CHARACTERIZATION OF BETA-KETOACYL ACP SYNTHASE I
JRNL TITL 2 BOUND TO PLATENCIN AND FRAGMENT SCREENING MOLECULES AT TWO
JRNL TITL 3 SUBSTRATE BINDING SITES.
JRNL REF PROTEINS V. 88 47 2020
JRNL REFN ESSN 1097-0134
JRNL PMID 31237717
JRNL DOI 10.1002/PROT.25765
REMARK 2
REMARK 2 RESOLUTION. 1.70 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.28
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8
REMARK 3 NUMBER OF REFLECTIONS : 44869
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.144
REMARK 3 R VALUE (WORKING SET) : 0.143
REMARK 3 FREE R VALUE : 0.169
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 2264
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74
REMARK 3 REFLECTION IN BIN (WORKING SET) : 3077
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.98
REMARK 3 BIN R VALUE (WORKING SET) : 0.1500
REMARK 3 BIN FREE R VALUE SET COUNT : 194
REMARK 3 BIN FREE R VALUE : 0.1990
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 3005
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 31
REMARK 3 SOLVENT ATOMS : 433
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 20.93
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.93
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -0.06000
REMARK 3 B22 (A**2) : -0.10000
REMARK 3 B33 (A**2) : -0.03000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.35000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.087
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.084
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.048
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.772
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3141 ; 0.013 ; 0.019
REMARK 3 BOND LENGTHS OTHERS (A): 2910 ; 0.001 ; 0.020
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4273 ; 1.354 ; 1.955
REMARK 3 BOND ANGLES OTHERS (DEGREES): 6692 ; 0.766 ; 2.992
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 420 ; 6.471 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 132 ;39.503 ;23.712
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 498 ;12.637 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;16.402 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 481 ; 0.090 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3665 ; 0.009 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): 711 ; 0.002 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1644 ; 0.736 ; 0.991
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1643 ; 0.734 ; 0.990
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2058 ; 1.190 ; 1.485
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 1
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A -10 A 9999
REMARK 3 ORIGIN FOR THE GROUP (A): 25.6300 2.0070 17.8640
REMARK 3 T TENSOR
REMARK 3 T11: 0.0166 T22: 0.0239
REMARK 3 T33: 0.0222 T12: -0.0138
REMARK 3 T13: 0.0120 T23: -0.0076
REMARK 3 L TENSOR
REMARK 3 L11: 0.4527 L22: 0.3926
REMARK 3 L33: 0.3159 L12: 0.0493
REMARK 3 L13: -0.1393 L23: -0.0426
REMARK 3 S TENSOR
REMARK 3 S11: -0.0396 S12: 0.0937 S13: -0.0187
REMARK 3 S21: -0.0662 S22: 0.0291 S23: -0.0235
REMARK 3 S31: 0.0052 S32: -0.0066 S33: 0.0105
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS U VALUES : WITH TLS ADDED
REMARK 4
REMARK 4 4JV3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-APR-13.
REMARK 100 THE DEPOSITION ID IS D_1000078541.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 07-FEB-13
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 8.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : N
REMARK 200 RADIATION SOURCE : ROTATING ANODE
REMARK 200 BEAMLINE : NULL
REMARK 200 X-RAY GENERATOR MODEL : RIGAKU
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418
REMARK 200 MONOCHROMATOR : RIGAKU VARIMAX
REMARK 200 OPTICS : RIGAKU VARIMAX
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XSCALE
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44869
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5
REMARK 200 DATA REDUNDANCY : 11.20
REMARK 200 R MERGE (I) : 0.03300
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 47.7900
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74
REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : 0.18700
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 7.520
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: NULL
REMARK 200 STARTING MODEL: PDB ENTRY 3LRF
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 46.41
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: MD PACT SCREEN, H2: 20% PEG 3350,
REMARK 280 100MM BISTRISPROPANE PH 8.5, 200MM NA-BROMIDE; TRAY 233841 F11,
REMARK 280 BRABA.00113.A AT 23 MG/ML, 2.5MM PLATENCIN, VAPOR DIFFUSION,
REMARK 280 SITTING DROP, TEMPERATURE 290K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y,-Z
REMARK 290 3555 X+1/2,Y+1/2,Z
REMARK 290 4555 -X+1/2,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 39.08000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.24000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 39.08000
REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 42.24000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 300 REMARK: BIOLOGICAL UNIT IS A DIMER GENERATED FROM THE MONOMER IN
REMARK 300 THE ASYMMETRIC UNIT BY THE OPERATION: -X+1, Y, -Z+1
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 5890 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 24240 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 40.24749
REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 63.57360
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A -20
REMARK 465 ALA A -19
REMARK 465 HIS A -18
REMARK 465 HIS A -17
REMARK 465 HIS A -16
REMARK 465 HIS A -15
REMARK 465 HIS A -14
REMARK 465 HIS A -13
REMARK 465 MET A -12
REMARK 465 GLY A -11
REMARK 465 THR A -10
REMARK 465 LEU A -9
REMARK 465 GLU A -8
REMARK 465 ALA A -7
REMARK 465 GLN A -6
REMARK 465 THR A -5
REMARK 465 GLN A -4
REMARK 465 GLY A -3
REMARK 465 PRO A -2
REMARK 465 GLY A -1
REMARK 465 SER A 0
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 GLU A 57 CG CD OE1 OE2
REMARK 470 LYS A 125 CG CD CE NZ
REMARK 470 LYS A 208 CG CD CE NZ
REMARK 470 LYS A 222 CG CD CE NZ
REMARK 470 LYS A 250 CG CD CE NZ
REMARK 470 LYS A 280 CG CD CE NZ
REMARK 470 ASP A 319 CG OD1 OD2
REMARK 470 VAL A 320 CG1 CG2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 PRO A 107 -161.52 -78.89
REMARK 500 SER A 159 44.80 -152.97
REMARK 500 ALA A 160 -128.63 54.78
REMARK 500 ARG A 218 61.47 -153.73
REMARK 500 TYR A 220 -8.71 79.47
REMARK 500 ASP A 225 28.90 -148.43
REMARK 500 TYR A 265 -81.20 -132.09
REMARK 500 ALA A 297 107.59 -6.28
REMARK 500 SER A 299 18.29 84.40
REMARK 500 LEU A 335 -115.81 58.02
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE N32 A 500
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 3LRF RELATED DB: PDB
REMARK 900 NATIVE PROTEIN
REMARK 900 RELATED ID: SSGCID-BRABA.00113.A RELATED DB: TARGETTRACK
DBREF 4JV3 A 1 407 UNP Q2YQQ9 Q2YQQ9_BRUA2 1 407
SEQADV 4JV3 MET A -20 UNP Q2YQQ9 EXPRESSION TAG
SEQADV 4JV3 ALA A -19 UNP Q2YQQ9 EXPRESSION TAG
SEQADV 4JV3 HIS A -18 UNP Q2YQQ9 EXPRESSION TAG
SEQADV 4JV3 HIS A -17 UNP Q2YQQ9 EXPRESSION TAG
SEQADV 4JV3 HIS A -16 UNP Q2YQQ9 EXPRESSION TAG
SEQADV 4JV3 HIS A -15 UNP Q2YQQ9 EXPRESSION TAG
SEQADV 4JV3 HIS A -14 UNP Q2YQQ9 EXPRESSION TAG
SEQADV 4JV3 HIS A -13 UNP Q2YQQ9 EXPRESSION TAG
SEQADV 4JV3 MET A -12 UNP Q2YQQ9 EXPRESSION TAG
SEQADV 4JV3 GLY A -11 UNP Q2YQQ9 EXPRESSION TAG
SEQADV 4JV3 THR A -10 UNP Q2YQQ9 EXPRESSION TAG
SEQADV 4JV3 LEU A -9 UNP Q2YQQ9 EXPRESSION TAG
SEQADV 4JV3 GLU A -8 UNP Q2YQQ9 EXPRESSION TAG
SEQADV 4JV3 ALA A -7 UNP Q2YQQ9 EXPRESSION TAG
SEQADV 4JV3 GLN A -6 UNP Q2YQQ9 EXPRESSION TAG
SEQADV 4JV3 THR A -5 UNP Q2YQQ9 EXPRESSION TAG
SEQADV 4JV3 GLN A -4 UNP Q2YQQ9 EXPRESSION TAG
SEQADV 4JV3 GLY A -3 UNP Q2YQQ9 EXPRESSION TAG
SEQADV 4JV3 PRO A -2 UNP Q2YQQ9 EXPRESSION TAG
SEQADV 4JV3 GLY A -1 UNP Q2YQQ9 EXPRESSION TAG
SEQADV 4JV3 SER A 0 UNP Q2YQQ9 EXPRESSION TAG
SEQRES 1 A 428 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU
SEQRES 2 A 428 ALA GLN THR GLN GLY PRO GLY SER MET ARG ARG VAL VAL
SEQRES 3 A 428 VAL THR GLY MET GLY ILE VAL SER SER ILE GLY SER ASN
SEQRES 4 A 428 THR GLU GLU VAL THR ALA SER LEU ARG GLU ALA LYS SER
SEQRES 5 A 428 GLY ILE SER ARG ALA GLU GLU TYR ALA GLU LEU GLY PHE
SEQRES 6 A 428 ARG CYS GLN VAL HIS GLY ALA PRO ASP ILE ASP ILE GLU
SEQRES 7 A 428 SER LEU VAL ASP ARG ARG ALA MET ARG PHE HIS GLY ARG
SEQRES 8 A 428 GLY THR ALA TRP ASN HIS ILE ALA MET ASP GLN ALA ILE
SEQRES 9 A 428 ALA ASP ALA GLY LEU THR GLU GLU GLU VAL SER ASN GLU
SEQRES 10 A 428 ARG THR GLY ILE ILE MET GLY SER GLY GLY PRO SER THR
SEQRES 11 A 428 ARG THR ILE VAL ASP SER ALA ASP ILE THR ARG GLU LYS
SEQRES 12 A 428 GLY PRO LYS ARG VAL GLY PRO PHE ALA VAL PRO LYS ALA
SEQRES 13 A 428 MET SER SER THR ALA SER ALA THR LEU ALA THR PHE PHE
SEQRES 14 A 428 LYS ILE LYS GLY ILE ASN TYR SER ILE SER SER ALA CSU
SEQRES 15 A 428 ALA THR SER ASN HIS CYS ILE GLY ASN ALA TYR GLU MET
SEQRES 16 A 428 ILE GLN TYR GLY LYS GLN ASP ARG MET PHE ALA GLY GLY
SEQRES 17 A 428 CYS GLU ASP LEU ASP TRP THR LEU SER VAL LEU PHE ASP
SEQRES 18 A 428 ALA MET GLY ALA MET SER SER LYS TYR ASN ASP THR PRO
SEQRES 19 A 428 SER THR ALA SER ARG ALA TYR ASP LYS ASN ARG ASP GLY
SEQRES 20 A 428 PHE VAL ILE ALA GLY GLY ALA GLY VAL LEU VAL LEU GLU
SEQRES 21 A 428 ASP LEU GLU THR ALA LEU ALA ARG GLY ALA LYS ILE TYR
SEQRES 22 A 428 GLY GLU ILE VAL GLY TYR GLY ALA THR SER ASP GLY TYR
SEQRES 23 A 428 ASP MET VAL ALA PRO SER GLY GLU GLY ALA ILE ARG CYS
SEQRES 24 A 428 MET LYS MET ALA LEU SER THR VAL THR SER LYS ILE ASP
SEQRES 25 A 428 TYR ILE ASN PRO HIS ALA THR SER THR PRO ALA GLY ASP
SEQRES 26 A 428 ALA PRO GLU ILE GLU ALA ILE ARG GLN ILE PHE GLY ALA
SEQRES 27 A 428 GLY ASP VAL CYS PRO PRO ILE ALA ALA THR LYS SER LEU
SEQRES 28 A 428 THR GLY HIS SER LEU GLY ALA THR GLY VAL GLN GLU ALA
SEQRES 29 A 428 ILE TYR SER LEU LEU MET MET GLN ASN ASN PHE ILE CYS
SEQRES 30 A 428 GLU SER ALA HIS ILE GLU GLU LEU ASP PRO ALA PHE ALA
SEQRES 31 A 428 ASP MET PRO ILE VAL ARG LYS ARG ILE ASP ASN VAL GLN
SEQRES 32 A 428 LEU ASN THR VAL LEU SER ASN SER PHE GLY PHE GLY GLY
SEQRES 33 A 428 THR ASN ALA THR LEU VAL PHE GLN ARG TYR GLN GLY
MODRES 4JV3 CSU A 161 CYS CYSTEINE-S-SULFONIC ACID
HET CSU A 161 10
HET N32 A 500 31
HETNAM CSU CYSTEINE-S-SULFONIC ACID
HETNAM N32 2,4-DIHYDROXY-3-({3-[(2S,4AS,8S,8AR)-8-METHYL-3-
HETNAM 2 N32 METHYLIDENE-7-OXO-1,3,4,7,8,8A-HEXAHYDRO-2H-2,4A-
HETNAM 3 N32 ETHANONAPHTHALEN-8-YL]PROPANOYL}AMINO)BENZOIC ACID
HETSYN N32 PLATENCIN
FORMUL 1 CSU C3 H7 N O5 S2
FORMUL 2 N32 C24 H27 N O6
FORMUL 3 HOH *433(H2 O)
HELIX 1 1 ASN A 18 ALA A 29 1 12
HELIX 2 2 ALA A 36 GLY A 43 1 8
HELIX 3 3 ASP A 55 LEU A 59 5 5
HELIX 4 4 ASP A 61 ARG A 66 1 6
HELIX 5 5 GLY A 69 GLY A 87 1 19
HELIX 6 6 THR A 89 SER A 94 1 6
HELIX 7 7 SER A 108 GLY A 123 1 16
HELIX 8 8 PRO A 124 GLY A 128 5 5
HELIX 9 9 ALA A 131 MET A 136 1 6
HELIX 10 10 SER A 138 PHE A 148 1 11
HELIX 11 11 SER A 159 CSU A 161 5 3
HELIX 12 12 ALA A 162 TYR A 177 1 16
HELIX 13 13 ASP A 192 GLY A 203 1 12
HELIX 14 14 THR A 212 ALA A 216 5 5
HELIX 15 15 LEU A 241 ARG A 247 1 7
HELIX 16 16 GLY A 272 SER A 284 1 13
HELIX 17 17 GLY A 303 GLY A 316 1 14
HELIX 18 18 ALA A 317 CYS A 321 5 5
HELIX 19 19 THR A 327 GLY A 332 1 6
HELIX 20 20 SER A 334 GLY A 336 5 3
HELIX 21 21 ALA A 337 ASN A 353 1 17
HELIX 22 22 ASP A 365 ALA A 369 5 5
SHEET 1 A 9 ASN A 154 TYR A 155 0
SHEET 2 A 9 THR A 98 SER A 104 1 N ILE A 100 O TYR A 155
SHEET 3 A 9 ARG A 182 GLU A 189 1 O PHE A 184 N GLY A 99
SHEET 4 A 9 GLY A 232 ASP A 240 -1 O LEU A 238 N MET A 183
SHEET 5 A 9 VAL A 4 VAL A 12 -1 N VAL A 5 O GLU A 239
SHEET 6 A 9 GLY A 253 SER A 262 -1 O GLY A 253 N VAL A 6
SHEET 7 A 9 THR A 396 GLN A 403 -1 O GLN A 403 N GLU A 254
SHEET 8 A 9 THR A 385 GLY A 392 -1 N VAL A 386 O PHE A 402
SHEET 9 A 9 TYR A 292 ASN A 294 1 N ASN A 294 O LEU A 387
SHEET 1 B 2 SER A 34 ARG A 35 0
SHEET 2 B 2 VAL A 48 HIS A 49 -1 O HIS A 49 N SER A 34
SHEET 1 C 2 PHE A 354 ILE A 355 0
SHEET 2 C 2 ILE A 378 ASP A 379 -1 O ILE A 378 N ILE A 355
LINK C ALA A 160 N CSU A 161 1555 1555 1.32
LINK C CSU A 161 N ALA A 162 1555 1555 1.34
SITE 1 AC1 17 CSU A 161 MET A 202 VAL A 268 ALA A 269
SITE 2 AC1 17 PRO A 270 HIS A 296 THR A 298 THR A 300
SITE 3 AC1 17 PRO A 301 ALA A 302 GLY A 303 HIS A 333
SITE 4 AC1 17 PHE A 391 GLY A 392 PHE A 393 HOH A 697
SITE 5 AC1 17 HOH A 699
CRYST1 78.160 84.480 74.020 90.00 120.81 90.00 C 1 2 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.012794 0.000000 0.007630 0.00000
SCALE2 0.000000 0.011837 0.000000 0.00000
SCALE3 0.000000 0.000000 0.015730 0.00000