HEADER PROTEIN BINDING 26-MAR-13 4JVW TITLE IGM C4-DOMAIN FROM MOUSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: IG MU CHAIN C REGION SECRETED FORM; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNO RESIDUES 324-436; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: IGH-6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS IMMUNOGLOBULIN M, ANTIBODY, OLIGOMERIZATION, IMMUNOGLOBULIN FOLD, KEYWDS 2 RECEPTOR, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR R.MUELLER,A.M.GRAEWERT,T.KERN,T.MADL,J.PESCHEK,M.SATTLER,M.GROLL, AUTHOR 2 J.BUCHNER REVDAT 3 20-SEP-23 4JVW 1 SEQADV SSBOND REVDAT 2 03-JUL-13 4JVW 1 JRNL REMARK REVDAT 1 12-JUN-13 4JVW 0 JRNL AUTH R.MULLER,M.A.GRAWERT,T.KERN,T.MADL,J.PESCHEK,M.SATTLER, JRNL AUTH 2 M.GROLL,J.BUCHNER JRNL TITL HIGH-RESOLUTION STRUCTURES OF THE IGM FC DOMAINS REVEAL JRNL TITL 2 PRINCIPLES OF ITS HEXAMER FORMATION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 10183 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 23733956 JRNL DOI 10.1073/PNAS.1300547110 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 28566 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1537 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1856 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3357 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 428 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.19000 REMARK 3 B22 (A**2) : 1.85000 REMARK 3 B33 (A**2) : -0.67000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.28000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.217 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.176 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.123 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.441 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3459 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3218 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4746 ; 1.256 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7454 ; 0.743 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 425 ; 6.144 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 143 ;35.660 ;24.266 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 527 ;14.686 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;17.008 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 540 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3842 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 733 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 900 4 REMARK 3 1 B 1 B 900 4 REMARK 3 1 C 1 C 900 4 REMARK 3 1 D 1 D 900 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1577 ; 1.120 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 B (A): 1577 ; 0.840 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 C (A): 1577 ; 0.910 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 D (A): 1577 ; 1.330 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1577 ; 3.620 ; 2.000 REMARK 3 MEDIUM THERMAL 1 B (A**2): 1577 ; 3.240 ; 2.000 REMARK 3 MEDIUM THERMAL 1 C (A**2): 1577 ; 2.900 ; 2.000 REMARK 3 MEDIUM THERMAL 1 D (A**2): 1577 ; 3.810 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 449 A 556 REMARK 3 RESIDUE RANGE : A 601 A 734 REMARK 3 ORIGIN FOR THE GROUP (A): 9.7861 28.6579 10.3910 REMARK 3 T TENSOR REMARK 3 T11: 0.0236 T22: 0.0113 REMARK 3 T33: 0.0302 T12: 0.0096 REMARK 3 T13: -0.0130 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 0.5248 L22: 0.3897 REMARK 3 L33: 1.1643 L12: -0.1856 REMARK 3 L13: -0.1101 L23: 0.6071 REMARK 3 S TENSOR REMARK 3 S11: 0.0269 S12: 0.0472 S13: 0.0367 REMARK 3 S21: -0.0239 S22: -0.0554 S23: -0.0290 REMARK 3 S31: -0.0684 S32: -0.0910 S33: 0.0285 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 448 B 556 REMARK 3 RESIDUE RANGE : B 601 B 702 REMARK 3 ORIGIN FOR THE GROUP (A): 30.1681 18.4925 43.6665 REMARK 3 T TENSOR REMARK 3 T11: 0.0200 T22: 0.0277 REMARK 3 T33: 0.0583 T12: 0.0189 REMARK 3 T13: 0.0183 T23: 0.0203 REMARK 3 L TENSOR REMARK 3 L11: 0.4266 L22: 1.1263 REMARK 3 L33: 3.4138 L12: -0.1239 REMARK 3 L13: 0.5090 L23: -0.6138 REMARK 3 S TENSOR REMARK 3 S11: 0.0307 S12: -0.0007 S13: 0.1015 REMARK 3 S21: 0.0286 S22: -0.0380 S23: -0.0649 REMARK 3 S31: -0.0172 S32: -0.0076 S33: 0.0073 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 449 C 556 REMARK 3 RESIDUE RANGE : C 601 C 711 REMARK 3 ORIGIN FOR THE GROUP (A): 15.5675 28.3390 45.5893 REMARK 3 T TENSOR REMARK 3 T11: 0.0446 T22: 0.0306 REMARK 3 T33: 0.0248 T12: 0.0168 REMARK 3 T13: -0.0045 T23: 0.0172 REMARK 3 L TENSOR REMARK 3 L11: 0.6425 L22: 1.9378 REMARK 3 L33: 0.0643 L12: -0.2422 REMARK 3 L13: -0.0601 L23: 0.1748 REMARK 3 S TENSOR REMARK 3 S11: 0.0649 S12: 0.0542 S13: 0.0208 REMARK 3 S21: -0.0762 S22: -0.0640 S23: -0.1495 REMARK 3 S31: -0.0515 S32: -0.0200 S33: -0.0009 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 450 D 556 REMARK 3 RESIDUE RANGE : D 601 D 681 REMARK 3 ORIGIN FOR THE GROUP (A): 27.7265 26.6888 12.3518 REMARK 3 T TENSOR REMARK 3 T11: 0.0586 T22: 0.0341 REMARK 3 T33: 0.0300 T12: -0.0365 REMARK 3 T13: -0.0031 T23: 0.0138 REMARK 3 L TENSOR REMARK 3 L11: 2.2085 L22: 2.0888 REMARK 3 L33: 0.9960 L12: -0.8353 REMARK 3 L13: 0.4053 L23: 0.5153 REMARK 3 S TENSOR REMARK 3 S11: 0.0648 S12: -0.1593 S13: -0.0236 REMARK 3 S21: 0.1970 S22: -0.0499 S23: -0.0339 REMARK 3 S31: -0.0416 S32: 0.0240 S33: -0.0149 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4JVW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000078570. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : SCANNING EMISSION MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER PLATINUM 135 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PROTEUM PLUS PLUS REMARK 200 DATA SCALING SOFTWARE : PROTEUM PLUS PLUS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31721 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.35400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1JVU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 15% PEG 8000, PH 7.2, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 84.57800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.60350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 84.57800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.60350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 692 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 444 REMARK 465 GLY A 445 REMARK 465 GLU A 446 REMARK 465 VAL A 447 REMARK 465 HIS A 448 REMARK 465 GLY A 557 REMARK 465 LYS A 558 REMARK 465 MET B 444 REMARK 465 GLY B 445 REMARK 465 GLU B 446 REMARK 465 VAL B 447 REMARK 465 GLY B 557 REMARK 465 LYS B 558 REMARK 465 MET C 444 REMARK 465 GLY C 445 REMARK 465 GLU C 446 REMARK 465 VAL C 447 REMARK 465 HIS C 448 REMARK 465 GLY C 557 REMARK 465 LYS C 558 REMARK 465 MET D 444 REMARK 465 GLY D 445 REMARK 465 GLU D 446 REMARK 465 VAL D 447 REMARK 465 HIS D 448 REMARK 465 LYS D 449 REMARK 465 LEU D 466 REMARK 465 ARG D 467 REMARK 465 GLY D 557 REMARK 465 LYS D 558 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS B 448 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE D 479 O HOH D 660 1.80 REMARK 500 O HOH A 669 O HOH A 702 1.81 REMARK 500 OG SER D 555 O HOH D 650 1.86 REMARK 500 O HOH A 662 O HOH A 684 1.96 REMARK 500 O HOH A 664 O HOH A 684 1.97 REMARK 500 O HOH B 626 O HOH B 687 1.98 REMARK 500 NE2 GLN D 463 O HOH D 616 2.08 REMARK 500 O HOH A 656 O HOH A 690 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 631 O HOH D 664 4546 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 468 -84.27 -127.60 REMARK 500 LEU A 546 -40.90 78.48 REMARK 500 GLU B 468 -86.57 -116.96 REMARK 500 ALA B 511 73.86 -116.77 REMARK 500 LEU B 546 -23.89 70.98 REMARK 500 GLU C 468 -96.96 -115.97 REMARK 500 LEU C 546 -17.68 74.08 REMARK 500 GLU D 462 133.00 -32.48 REMARK 500 LEU D 546 -26.67 72.86 REMARK 500 LYS D 554 -33.03 -36.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JVU RELATED DB: PDB REMARK 900 IGM C2-DOMAIN FROM MOUSE DBREF 4JVW A 446 558 UNP P01872 IGHM_MOUSE 324 436 DBREF 4JVW B 446 558 UNP P01872 IGHM_MOUSE 324 436 DBREF 4JVW C 446 558 UNP P01872 IGHM_MOUSE 324 436 DBREF 4JVW D 446 558 UNP P01872 IGHM_MOUSE 324 436 SEQADV 4JVW MET A 444 UNP P01872 EXPRESSION TAG SEQADV 4JVW GLY A 445 UNP P01872 EXPRESSION TAG SEQADV 4JVW MET B 444 UNP P01872 EXPRESSION TAG SEQADV 4JVW GLY B 445 UNP P01872 EXPRESSION TAG SEQADV 4JVW MET C 444 UNP P01872 EXPRESSION TAG SEQADV 4JVW GLY C 445 UNP P01872 EXPRESSION TAG SEQADV 4JVW MET D 444 UNP P01872 EXPRESSION TAG SEQADV 4JVW GLY D 445 UNP P01872 EXPRESSION TAG SEQRES 1 A 115 MET GLY GLU VAL HIS LYS HIS PRO PRO ALA VAL TYR LEU SEQRES 2 A 115 LEU PRO PRO ALA ARG GLU GLN LEU ASN LEU ARG GLU SER SEQRES 3 A 115 ALA THR VAL THR CYS LEU VAL LYS GLY PHE SER PRO ALA SEQRES 4 A 115 ASP ILE SER VAL GLN TRP LEU GLN ARG GLY GLN LEU LEU SEQRES 5 A 115 PRO GLN GLU LYS TYR VAL THR SER ALA PRO MET PRO GLU SEQRES 6 A 115 PRO GLY ALA PRO GLY PHE TYR PHE THR HIS SER ILE LEU SEQRES 7 A 115 THR VAL THR GLU GLU GLU TRP ASN SER GLY GLU THR TYR SEQRES 8 A 115 THR CYS VAL VAL GLY HIS GLU ALA LEU PRO HIS LEU VAL SEQRES 9 A 115 THR GLU ARG THR VAL ASP LYS SER THR GLY LYS SEQRES 1 B 115 MET GLY GLU VAL HIS LYS HIS PRO PRO ALA VAL TYR LEU SEQRES 2 B 115 LEU PRO PRO ALA ARG GLU GLN LEU ASN LEU ARG GLU SER SEQRES 3 B 115 ALA THR VAL THR CYS LEU VAL LYS GLY PHE SER PRO ALA SEQRES 4 B 115 ASP ILE SER VAL GLN TRP LEU GLN ARG GLY GLN LEU LEU SEQRES 5 B 115 PRO GLN GLU LYS TYR VAL THR SER ALA PRO MET PRO GLU SEQRES 6 B 115 PRO GLY ALA PRO GLY PHE TYR PHE THR HIS SER ILE LEU SEQRES 7 B 115 THR VAL THR GLU GLU GLU TRP ASN SER GLY GLU THR TYR SEQRES 8 B 115 THR CYS VAL VAL GLY HIS GLU ALA LEU PRO HIS LEU VAL SEQRES 9 B 115 THR GLU ARG THR VAL ASP LYS SER THR GLY LYS SEQRES 1 C 115 MET GLY GLU VAL HIS LYS HIS PRO PRO ALA VAL TYR LEU SEQRES 2 C 115 LEU PRO PRO ALA ARG GLU GLN LEU ASN LEU ARG GLU SER SEQRES 3 C 115 ALA THR VAL THR CYS LEU VAL LYS GLY PHE SER PRO ALA SEQRES 4 C 115 ASP ILE SER VAL GLN TRP LEU GLN ARG GLY GLN LEU LEU SEQRES 5 C 115 PRO GLN GLU LYS TYR VAL THR SER ALA PRO MET PRO GLU SEQRES 6 C 115 PRO GLY ALA PRO GLY PHE TYR PHE THR HIS SER ILE LEU SEQRES 7 C 115 THR VAL THR GLU GLU GLU TRP ASN SER GLY GLU THR TYR SEQRES 8 C 115 THR CYS VAL VAL GLY HIS GLU ALA LEU PRO HIS LEU VAL SEQRES 9 C 115 THR GLU ARG THR VAL ASP LYS SER THR GLY LYS SEQRES 1 D 115 MET GLY GLU VAL HIS LYS HIS PRO PRO ALA VAL TYR LEU SEQRES 2 D 115 LEU PRO PRO ALA ARG GLU GLN LEU ASN LEU ARG GLU SER SEQRES 3 D 115 ALA THR VAL THR CYS LEU VAL LYS GLY PHE SER PRO ALA SEQRES 4 D 115 ASP ILE SER VAL GLN TRP LEU GLN ARG GLY GLN LEU LEU SEQRES 5 D 115 PRO GLN GLU LYS TYR VAL THR SER ALA PRO MET PRO GLU SEQRES 6 D 115 PRO GLY ALA PRO GLY PHE TYR PHE THR HIS SER ILE LEU SEQRES 7 D 115 THR VAL THR GLU GLU GLU TRP ASN SER GLY GLU THR TYR SEQRES 8 D 115 THR CYS VAL VAL GLY HIS GLU ALA LEU PRO HIS LEU VAL SEQRES 9 D 115 THR GLU ARG THR VAL ASP LYS SER THR GLY LYS FORMUL 5 HOH *428(H2 O) HELIX 1 1 ALA A 460 ASN A 465 1 6 HELIX 2 2 PRO A 496 TYR A 500 5 5 HELIX 3 3 GLU A 525 SER A 530 1 6 HELIX 4 4 ALA B 460 ASN B 465 1 6 HELIX 5 5 PRO B 496 TYR B 500 5 5 HELIX 6 6 GLU B 525 GLY B 531 1 7 HELIX 7 7 ALA C 460 LEU C 466 1 7 HELIX 8 8 PRO C 496 GLU C 498 5 3 HELIX 9 9 GLU C 525 SER C 530 1 6 HELIX 10 10 PRO D 496 GLU D 498 5 3 HELIX 11 11 GLU D 525 SER D 530 1 6 SHEET 1 A 4 ALA A 453 LEU A 457 0 SHEET 2 A 4 SER A 469 PHE A 479 -1 O THR A 473 N LEU A 457 SHEET 3 A 4 TYR A 515 THR A 524 -1 O SER A 519 N CYS A 474 SHEET 4 A 4 VAL A 501 THR A 502 -1 N VAL A 501 O ILE A 520 SHEET 1 B 4 ALA A 453 LEU A 457 0 SHEET 2 B 4 SER A 469 PHE A 479 -1 O THR A 473 N LEU A 457 SHEET 3 B 4 TYR A 515 THR A 524 -1 O SER A 519 N CYS A 474 SHEET 4 B 4 MET A 506 PRO A 507 -1 N MET A 506 O PHE A 516 SHEET 1 C 4 GLN A 493 LEU A 494 0 SHEET 2 C 4 SER A 485 GLN A 490 -1 N GLN A 490 O GLN A 493 SHEET 3 C 4 TYR A 534 GLY A 539 -1 O VAL A 537 N GLN A 487 SHEET 4 C 4 VAL A 547 VAL A 552 -1 O THR A 548 N VAL A 538 SHEET 1 D 4 ALA B 453 LEU B 457 0 SHEET 2 D 4 SER B 469 PHE B 479 -1 O THR B 473 N LEU B 457 SHEET 3 D 4 TYR B 515 THR B 524 -1 O LEU B 521 N VAL B 472 SHEET 4 D 4 VAL B 501 THR B 502 -1 N VAL B 501 O ILE B 520 SHEET 1 E 4 ALA B 453 LEU B 457 0 SHEET 2 E 4 SER B 469 PHE B 479 -1 O THR B 473 N LEU B 457 SHEET 3 E 4 TYR B 515 THR B 524 -1 O LEU B 521 N VAL B 472 SHEET 4 E 4 MET B 506 PRO B 507 -1 N MET B 506 O PHE B 516 SHEET 1 F 4 GLN B 493 LEU B 494 0 SHEET 2 F 4 SER B 485 GLN B 490 -1 N GLN B 490 O GLN B 493 SHEET 3 F 4 TYR B 534 GLY B 539 -1 O VAL B 537 N GLN B 487 SHEET 4 F 4 VAL B 547 VAL B 552 -1 O THR B 548 N VAL B 538 SHEET 1 G 4 ALA C 453 LEU C 457 0 SHEET 2 G 4 SER C 469 PHE C 479 -1 O LEU C 475 N TYR C 455 SHEET 3 G 4 TYR C 515 THR C 524 -1 O VAL C 523 N ALA C 470 SHEET 4 G 4 TYR C 500 THR C 502 -1 N VAL C 501 O ILE C 520 SHEET 1 H 4 ALA C 453 LEU C 457 0 SHEET 2 H 4 SER C 469 PHE C 479 -1 O LEU C 475 N TYR C 455 SHEET 3 H 4 TYR C 515 THR C 524 -1 O VAL C 523 N ALA C 470 SHEET 4 H 4 MET C 506 PRO C 507 -1 N MET C 506 O PHE C 516 SHEET 1 I 4 GLN C 493 LEU C 494 0 SHEET 2 I 4 SER C 485 GLN C 490 -1 N GLN C 490 O GLN C 493 SHEET 3 I 4 TYR C 534 GLY C 539 -1 O VAL C 537 N GLN C 487 SHEET 4 I 4 VAL C 547 VAL C 552 -1 O THR C 548 N VAL C 538 SHEET 1 J 4 ALA D 453 LEU D 457 0 SHEET 2 J 4 SER D 469 PHE D 479 -1 O THR D 473 N LEU D 457 SHEET 3 J 4 TYR D 515 THR D 524 -1 O VAL D 523 N ALA D 470 SHEET 4 J 4 TYR D 500 THR D 502 -1 N VAL D 501 O ILE D 520 SHEET 1 K 4 ALA D 453 LEU D 457 0 SHEET 2 K 4 SER D 469 PHE D 479 -1 O THR D 473 N LEU D 457 SHEET 3 K 4 TYR D 515 THR D 524 -1 O VAL D 523 N ALA D 470 SHEET 4 K 4 MET D 506 PRO D 507 -1 N MET D 506 O PHE D 516 SHEET 1 L 4 GLN D 493 LEU D 494 0 SHEET 2 L 4 SER D 485 GLN D 490 -1 N GLN D 490 O GLN D 493 SHEET 3 L 4 TYR D 534 GLY D 539 -1 O VAL D 537 N GLN D 487 SHEET 4 L 4 VAL D 547 VAL D 552 -1 O VAL D 552 N TYR D 534 SSBOND 1 CYS A 474 CYS A 536 1555 1555 2.02 SSBOND 2 CYS B 474 CYS B 536 1555 1555 2.02 SSBOND 3 CYS C 474 CYS C 536 1555 1555 2.05 SSBOND 4 CYS D 474 CYS D 536 1555 1555 2.05 CISPEP 1 SER A 480 PRO A 481 0 2.52 CISPEP 2 SER B 480 PRO B 481 0 0.22 CISPEP 3 SER C 480 PRO C 481 0 3.82 CISPEP 4 SER D 480 PRO D 481 0 4.96 CRYST1 169.156 41.207 67.109 90.00 92.31 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005912 0.000000 0.000239 0.00000 SCALE2 0.000000 0.024268 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014913 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -0.858621 0.512386 0.015177 25.53759 1 MTRIX2 2 -0.511797 -0.858550 0.030903 58.69688 1 MTRIX3 2 0.028864 0.018766 0.999407 -34.34932 1 MTRIX1 3 0.770901 -0.169418 -0.614011 30.62411 1 MTRIX2 3 0.424042 -0.582805 0.693200 6.89823 1 MTRIX3 3 -0.475290 -0.794755 -0.377445 57.58217 1 MTRIX1 4 -0.770480 -0.144965 -0.620762 42.45343 1 MTRIX2 4 -0.633571 0.281600 0.720617 29.83218 1 MTRIX3 4 0.070343 0.948518 -0.308813 -12.84653 1