HEADER CHAPERONE/ANTIBIOTIC 27-MAR-13 4JWE TITLE CRYSTAL STRUCTURE OF THE SUBSTRATE BINDING DOMAIN OF E.COLI DNAK IN TITLE 2 COMPLEX WITH SHEEP BAC7(1-21) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHAPERONE PROTEIN DNAK; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 389-607; COMPND 5 SYNONYM: HSP70, HEAT SHOCK 70 KDA PROTEIN, HEAT SHOCK PROTEIN 70; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CATHELICIDIN-3; COMPND 9 CHAIN: C, D; COMPND 10 FRAGMENT: UNP RESIDUES 131-151; COMPND 11 SYNONYM: BACTENECIN-7, BAC7, PR-59; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: DNAK, GROP, GRPF, SEG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: OVIS ARIES; SOURCE 11 ORGANISM_COMMON: COW; SOURCE 12 ORGANISM_TAXID: 9940 KEYWDS CHAPERONE, PEPTIDE BINDING, ANTIMICROBIAL PEPTIDE, PEPTIDE BINDING KEYWDS 2 PROTEIN, CHAPERONE-ANTIBIOTIC COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.ZAHN,N.STRAETER REVDAT 4 20-SEP-23 4JWE 1 REMARK REVDAT 3 15-NOV-17 4JWE 1 REMARK REVDAT 2 26-MAR-14 4JWE 1 JRNL REVDAT 1 13-NOV-13 4JWE 0 JRNL AUTH M.ZAHN,B.KIESLICH,N.BERTHOLD,D.KNAPPE,R.HOFFMANN,N.STRATER JRNL TITL STRUCTURAL IDENTIFICATION OF DNAK BINDING SITES WITHIN JRNL TITL 2 BOVINE AND SHEEP BACTENECIN BAC7. JRNL REF PROTEIN PEPT.LETT. V. 21 407 2014 JRNL REFN ISSN 0929-8665 JRNL PMID 24164259 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.8.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 39514 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1967 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.00 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2967 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1927 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2829 REMARK 3 BIN R VALUE (WORKING SET) : 0.1903 REMARK 3 BIN FREE R VALUE : 0.2442 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.65 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 138 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3383 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 335 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.95 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.01490 REMARK 3 B22 (A**2) : 0.05270 REMARK 3 B33 (A**2) : -4.06760 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.236 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3474 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4690 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1299 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 115 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 490 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3474 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 480 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4163 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.10 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.85 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.02 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|389 - A|516 } REMARK 3 ORIGIN FOR THE GROUP (A): -31.2451 36.6919 -22.0341 REMARK 3 T TENSOR REMARK 3 T11: -0.0351 T22: 0.0072 REMARK 3 T33: -0.0358 T12: 0.0032 REMARK 3 T13: 0.0020 T23: -0.0184 REMARK 3 L TENSOR REMARK 3 L11: 1.5246 L22: 0.6928 REMARK 3 L33: 0.2823 L12: -0.2554 REMARK 3 L13: -0.2008 L23: 0.1304 REMARK 3 S TENSOR REMARK 3 S11: -0.0940 S12: 0.0425 S13: 0.1115 REMARK 3 S21: 0.0037 S22: 0.0605 S23: -0.0063 REMARK 3 S31: -0.0014 S32: -0.0624 S33: 0.0335 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|517 - A|544 } REMARK 3 ORIGIN FOR THE GROUP (A): -36.9684 19.2632 -16.2810 REMARK 3 T TENSOR REMARK 3 T11: -0.1074 T22: -0.0789 REMARK 3 T33: 0.0414 T12: -0.0918 REMARK 3 T13: -0.0803 T23: 0.1049 REMARK 3 L TENSOR REMARK 3 L11: 4.0148 L22: 3.9373 REMARK 3 L33: 1.1533 L12: 1.9328 REMARK 3 L13: -0.0319 L23: -2.9104 REMARK 3 S TENSOR REMARK 3 S11: 0.0006 S12: 0.2808 S13: -0.0914 REMARK 3 S21: -0.3999 S22: 0.5430 S23: 0.5442 REMARK 3 S31: 0.3744 S32: -0.3069 S33: -0.5436 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|545 - A|601 } REMARK 3 ORIGIN FOR THE GROUP (A): -55.1409 18.3905 -3.2966 REMARK 3 T TENSOR REMARK 3 T11: -0.2297 T22: -0.0229 REMARK 3 T33: 0.1303 T12: -0.0391 REMARK 3 T13: 0.0607 T23: 0.1520 REMARK 3 L TENSOR REMARK 3 L11: 4.1826 L22: 2.1756 REMARK 3 L33: 2.8074 L12: -2.9104 REMARK 3 L13: -1.1932 L23: -0.0240 REMARK 3 S TENSOR REMARK 3 S11: -0.0368 S12: -0.2063 S13: 0.1821 REMARK 3 S21: 0.0655 S22: 0.4496 S23: 0.4016 REMARK 3 S31: -0.1052 S32: -0.5438 S33: -0.4128 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { B|389 - B|507 } REMARK 3 ORIGIN FOR THE GROUP (A): -11.2730 19.0579 -5.8259 REMARK 3 T TENSOR REMARK 3 T11: -0.0439 T22: -0.0288 REMARK 3 T33: -0.0116 T12: -0.0186 REMARK 3 T13: 0.0000 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 0.8383 L22: 1.5259 REMARK 3 L33: 0.7863 L12: -0.0721 REMARK 3 L13: -0.0312 L23: 0.5231 REMARK 3 S TENSOR REMARK 3 S11: 0.0339 S12: -0.0701 S13: -0.0973 REMARK 3 S21: -0.0275 S22: -0.0014 S23: -0.1895 REMARK 3 S31: 0.0345 S32: 0.0599 S33: -0.0326 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { B|508 - B|531 } REMARK 3 ORIGIN FOR THE GROUP (A): -29.9476 19.3632 -0.3885 REMARK 3 T TENSOR REMARK 3 T11: -0.1044 T22: -0.0130 REMARK 3 T33: -0.0099 T12: -0.0117 REMARK 3 T13: 0.0255 T23: 0.0347 REMARK 3 L TENSOR REMARK 3 L11: 6.2330 L22: 3.2943 REMARK 3 L33: 1.3656 L12: 2.9104 REMARK 3 L13: 0.1418 L23: 1.3777 REMARK 3 S TENSOR REMARK 3 S11: -0.0550 S12: -0.5442 S13: -0.3913 REMARK 3 S21: 0.2158 S22: -0.1343 S23: 0.1322 REMARK 3 S31: 0.0028 S32: -0.4144 S33: 0.1893 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { B|532 - B|599 } REMARK 3 ORIGIN FOR THE GROUP (A): -21.0247 -7.2046 -19.1407 REMARK 3 T TENSOR REMARK 3 T11: -0.0859 T22: 0.0071 REMARK 3 T33: -0.0666 T12: -0.1520 REMARK 3 T13: -0.0173 T23: -0.0441 REMARK 3 L TENSOR REMARK 3 L11: 2.7080 L22: 2.7829 REMARK 3 L33: 5.5828 L12: -0.8881 REMARK 3 L13: -2.9104 L23: 1.8070 REMARK 3 S TENSOR REMARK 3 S11: -0.0089 S12: 0.5442 S13: 0.1633 REMARK 3 S21: -0.1564 S22: 0.1058 S23: 0.0891 REMARK 3 S31: 0.1566 S32: -0.0068 S33: -0.0969 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JWE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000078588. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39570 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 24.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.27300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 3DPO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 ACETATE PH 5.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 38.82950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 81.26550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.82950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 81.26550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -90.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -44.78300 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 SD MET B 469 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 602 REMARK 465 GLN A 603 REMARK 465 GLN A 604 REMARK 465 GLN A 605 REMARK 465 HIS A 606 REMARK 465 ALA A 607 REMARK 465 GLU B 600 REMARK 465 ILE B 601 REMARK 465 ALA B 602 REMARK 465 GLN B 603 REMARK 465 GLN B 604 REMARK 465 GLN B 605 REMARK 465 HIS B 606 REMARK 465 ALA B 607 REMARK 465 ARG C 1 REMARK 465 ARG C 2 REMARK 465 LEU C 3 REMARK 465 ARG C 4 REMARK 465 PRO C 5 REMARK 465 ARG C 6 REMARK 465 ARG C 16 REMARK 465 PRO C 17 REMARK 465 ARG C 18 REMARK 465 PRO C 19 REMARK 465 ARG C 20 REMARK 465 PRO C 21 REMARK 465 ARG D 1 REMARK 465 ARG D 2 REMARK 465 LEU D 3 REMARK 465 ARG D 4 REMARK 465 PRO D 5 REMARK 465 PRO D 15 REMARK 465 ARG D 16 REMARK 465 PRO D 17 REMARK 465 ARG D 18 REMARK 465 PRO D 19 REMARK 465 ARG D 20 REMARK 465 PRO D 21 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 404 122.54 -34.28 REMARK 500 SER B 595 57.05 -109.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN C OF CATHELICIDIN-3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN D OF CATHELICIDIN-3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DKX RELATED DB: PDB REMARK 900 RELATED ID: 1DKY RELATED DB: PDB REMARK 900 RELATED ID: 1DKZ RELATED DB: PDB REMARK 900 RELATED ID: 3DPO RELATED DB: PDB REMARK 900 RELATED ID: 3DPP RELATED DB: PDB REMARK 900 RELATED ID: 3DPQ RELATED DB: PDB REMARK 900 RELATED ID: 3QNJ RELATED DB: PDB REMARK 900 RELATED ID: 4E81 RELATED DB: PDB REMARK 900 RELATED ID: 4JWC RELATED DB: PDB REMARK 900 RELATED ID: 4JWD RELATED DB: PDB REMARK 900 RELATED ID: 4JWI RELATED DB: PDB DBREF 4JWE A 389 607 UNP P0A6Y8 DNAK_ECOLI 389 607 DBREF 4JWE B 389 607 UNP P0A6Y8 DNAK_ECOLI 389 607 DBREF 4JWE C 1 21 UNP P50415 CTHL3_SHEEP 131 151 DBREF 4JWE D 1 21 UNP P50415 CTHL3_SHEEP 131 151 SEQRES 1 A 219 VAL LEU LEU LEU ASP VAL THR PRO LEU SER LEU GLY ILE SEQRES 2 A 219 GLU THR MET GLY GLY VAL MET THR THR LEU ILE ALA LYS SEQRES 3 A 219 ASN THR THR ILE PRO THR LYS HIS SER GLN VAL PHE SER SEQRES 4 A 219 THR ALA GLU ASP ASN GLN SER ALA VAL THR ILE HIS VAL SEQRES 5 A 219 LEU GLN GLY GLU ARG LYS ARG ALA ALA ASP ASN LYS SER SEQRES 6 A 219 LEU GLY GLN PHE ASN LEU ASP GLY ILE ASN PRO ALA PRO SEQRES 7 A 219 ARG GLY MET PRO GLN ILE GLU VAL THR PHE ASP ILE ASP SEQRES 8 A 219 ALA ASP GLY ILE LEU HIS VAL SER ALA LYS ASP LYS ASN SEQRES 9 A 219 SER GLY LYS GLU GLN LYS ILE THR ILE LYS ALA SER SER SEQRES 10 A 219 GLY LEU ASN GLU ASP GLU ILE GLN LYS MET VAL ARG ASP SEQRES 11 A 219 ALA GLU ALA ASN ALA GLU ALA ASP ARG LYS PHE GLU GLU SEQRES 12 A 219 LEU VAL GLN THR ARG ASN GLN GLY ASP HIS LEU LEU HIS SEQRES 13 A 219 SER THR ARG LYS GLN VAL GLU GLU ALA GLY ASP LYS LEU SEQRES 14 A 219 PRO ALA ASP ASP LYS THR ALA ILE GLU SER ALA LEU THR SEQRES 15 A 219 ALA LEU GLU THR ALA LEU LYS GLY GLU ASP LYS ALA ALA SEQRES 16 A 219 ILE GLU ALA LYS MET GLN GLU LEU ALA GLN VAL SER GLN SEQRES 17 A 219 LYS LEU MET GLU ILE ALA GLN GLN GLN HIS ALA SEQRES 1 B 219 VAL LEU LEU LEU ASP VAL THR PRO LEU SER LEU GLY ILE SEQRES 2 B 219 GLU THR MET GLY GLY VAL MET THR THR LEU ILE ALA LYS SEQRES 3 B 219 ASN THR THR ILE PRO THR LYS HIS SER GLN VAL PHE SER SEQRES 4 B 219 THR ALA GLU ASP ASN GLN SER ALA VAL THR ILE HIS VAL SEQRES 5 B 219 LEU GLN GLY GLU ARG LYS ARG ALA ALA ASP ASN LYS SER SEQRES 6 B 219 LEU GLY GLN PHE ASN LEU ASP GLY ILE ASN PRO ALA PRO SEQRES 7 B 219 ARG GLY MET PRO GLN ILE GLU VAL THR PHE ASP ILE ASP SEQRES 8 B 219 ALA ASP GLY ILE LEU HIS VAL SER ALA LYS ASP LYS ASN SEQRES 9 B 219 SER GLY LYS GLU GLN LYS ILE THR ILE LYS ALA SER SER SEQRES 10 B 219 GLY LEU ASN GLU ASP GLU ILE GLN LYS MET VAL ARG ASP SEQRES 11 B 219 ALA GLU ALA ASN ALA GLU ALA ASP ARG LYS PHE GLU GLU SEQRES 12 B 219 LEU VAL GLN THR ARG ASN GLN GLY ASP HIS LEU LEU HIS SEQRES 13 B 219 SER THR ARG LYS GLN VAL GLU GLU ALA GLY ASP LYS LEU SEQRES 14 B 219 PRO ALA ASP ASP LYS THR ALA ILE GLU SER ALA LEU THR SEQRES 15 B 219 ALA LEU GLU THR ALA LEU LYS GLY GLU ASP LYS ALA ALA SEQRES 16 B 219 ILE GLU ALA LYS MET GLN GLU LEU ALA GLN VAL SER GLN SEQRES 17 B 219 LYS LEU MET GLU ILE ALA GLN GLN GLN HIS ALA SEQRES 1 C 21 ARG ARG LEU ARG PRO ARG ARG PRO ARG LEU PRO ARG PRO SEQRES 2 C 21 ARG PRO ARG PRO ARG PRO ARG PRO SEQRES 1 D 21 ARG ARG LEU ARG PRO ARG ARG PRO ARG LEU PRO ARG PRO SEQRES 2 D 21 ARG PRO ARG PRO ARG PRO ARG PRO HET SO4 A 701 5 HET SO4 A 702 5 HET SO4 A 703 5 HET SO4 B 701 5 HET SO4 B 702 5 HET SO4 B 703 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 6(O4 S 2-) FORMUL 11 HOH *335(H2 O) HELIX 1 1 ARG A 447 ASN A 451 5 5 HELIX 2 2 ASN A 508 ASN A 522 1 15 HELIX 3 3 ASN A 522 GLY A 554 1 33 HELIX 4 4 ASP A 555 LEU A 557 5 3 HELIX 5 5 PRO A 558 GLY A 578 1 21 HELIX 6 6 ASP A 580 VAL A 594 1 15 HELIX 7 7 SER A 595 ILE A 601 1 7 HELIX 8 8 ARG B 447 ASN B 451 5 5 HELIX 9 9 ASN B 508 ASN B 522 1 15 HELIX 10 10 ASN B 522 GLY B 554 1 33 HELIX 11 11 PRO B 558 LEU B 576 1 19 HELIX 12 12 ASP B 580 SER B 595 1 16 SHEET 1 A 2 VAL A 394 THR A 395 0 SHEET 2 A 2 THR A 416 THR A 417 -1 O THR A 416 N THR A 395 SHEET 1 B 4 VAL A 407 ILE A 412 0 SHEET 2 B 4 LEU A 399 THR A 403 -1 N LEU A 399 O LEU A 411 SHEET 3 B 4 VAL A 436 GLN A 442 -1 O LEU A 441 N GLY A 400 SHEET 4 B 4 LYS A 452 LEU A 459 -1 O PHE A 457 N ILE A 438 SHEET 1 C 5 GLU A 496 ILE A 501 0 SHEET 2 C 5 LEU A 484 ASP A 490 -1 N LEU A 484 O ILE A 501 SHEET 3 C 5 ILE A 472 ILE A 478 -1 N ASP A 477 O HIS A 485 SHEET 4 C 5 THR A 420 THR A 428 -1 N PHE A 426 O ILE A 472 SHEET 5 C 5 ARG D 9 LEU D 10 1 O LEU D 10 N SER A 427 SHEET 1 D 4 VAL B 407 ILE B 412 0 SHEET 2 D 4 LEU B 399 THR B 403 -1 N LEU B 399 O LEU B 411 SHEET 3 D 4 VAL B 436 GLN B 442 -1 O LEU B 441 N GLY B 400 SHEET 4 D 4 LYS B 452 LEU B 459 -1 O PHE B 457 N ILE B 438 SHEET 1 E 5 GLU B 496 ILE B 501 0 SHEET 2 E 5 LEU B 484 ASP B 490 -1 N LEU B 484 O ILE B 501 SHEET 3 E 5 ILE B 472 ILE B 478 -1 N ASP B 477 O HIS B 485 SHEET 4 E 5 THR B 420 THR B 428 -1 N GLN B 424 O VAL B 474 SHEET 5 E 5 ARG C 9 LEU C 10 1 O LEU C 10 N SER B 427 CISPEP 1 ILE A 418 PRO A 419 0 2.04 CISPEP 2 ILE B 418 PRO B 419 0 1.82 SITE 1 AC1 3 ARG A 467 HIS A 541 ARG D 9 SITE 1 AC2 9 ASN A 451 LYS A 452 SER A 453 HOH A 825 SITE 2 AC2 9 HOH A 888 HOH A 889 HOH A 953 LYS B 452 SITE 3 AC2 9 HOH B 850 SITE 1 AC3 2 HIS A 422 SER A 423 SITE 1 AC4 5 LYS B 502 SER B 504 HOH B 806 HOH B 881 SITE 2 AC4 5 HOH B 916 SITE 1 AC5 4 LYS A 414 HOH A 832 LYS B 414 HOH B 865 SITE 1 AC6 5 LYS A 528 ARG B 447 ARG B 536 LYS B 577 SITE 2 AC6 5 GLU B 579 SITE 1 AC7 25 ASP A 518 ALA A 521 ASN A 522 ILE B 401 SITE 2 AC7 25 THR B 403 MET B 404 GLN B 424 VAL B 425 SITE 3 AC7 25 PHE B 426 SER B 427 THR B 428 ALA B 429 SITE 4 AC7 25 GLN B 433 ALA B 435 VAL B 436 THR B 437 SITE 5 AC7 25 ASN B 458 ARG B 467 GLN B 471 HIS B 541 SITE 6 AC7 25 HOH C 101 HOH C 102 HOH C 103 HOH C 104 SITE 7 AC7 25 HOH C 105 SITE 1 AC8 25 ILE A 401 THR A 403 MET A 404 GLN A 424 SITE 2 AC8 25 VAL A 425 PHE A 426 SER A 427 THR A 428 SITE 3 AC8 25 ALA A 429 GLU A 430 GLN A 433 ALA A 435 SITE 4 AC8 25 VAL A 436 THR A 437 ASN A 458 ARG A 467 SITE 5 AC8 25 GLY A 468 SO4 A 701 HOH A 859 ASN B 508 SITE 6 AC8 25 GLU B 509 HOH D 101 HOH D 102 HOH D 103 SITE 7 AC8 25 HOH D 104 CRYST1 77.659 162.531 44.783 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012877 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006153 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022330 0.00000