HEADER TRANSFERASE 27-MAR-13 4JWF TITLE CRYSTAL STRUCTURE OF SPTRM10(74)-SAH COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE(9)-N1)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 74-281; COMPND 5 SYNONYM: TRNA METHYLTRANSFERASE 10, TRNA(M1G9)-METHYLTRANSFERASE, COMPND 6 TRNA(M1G9)MTASE; COMPND 7 EC: 2.1.1.221; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 284812; SOURCE 5 STRAIN: 972 / ATCC 24843; SOURCE 6 GENE: SPAC6B12.09, TRM10; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS TRNA MTASE DOMAIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR W.YAN,Z.SHAO REVDAT 2 12-FEB-14 4JWF 1 JRNL REVDAT 1 16-OCT-13 4JWF 0 JRNL AUTH Z.SHAO,W.YAN,J.PENG,X.ZUO,Y.ZOU,F.LI,D.GONG,R.MA,J.WU,Y.SHI, JRNL AUTH 2 Z.ZHANG,M.TENG,X.LI,Q.GONG JRNL TITL CRYSTAL STRUCTURE OF TRNA M1G9 METHYLTRANSFERASE TRM10: JRNL TITL 2 INSIGHT INTO THE CATALYTIC MECHANISM AND RECOGNITION OF TRNA JRNL TITL 3 SUBSTRATE. JRNL REF NUCLEIC ACIDS RES. V. 42 509 2014 JRNL REFN ISSN 0305-1048 JRNL PMID 24081582 JRNL DOI 10.1093/NAR/GKT869 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 17384 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 940 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1265 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE SET COUNT : 75 REMARK 3 BIN FREE R VALUE : 0.3670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3014 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 111 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.433 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.273 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.193 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.077 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.911 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.882 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3104 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4206 ; 1.215 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 372 ; 5.471 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 147 ;38.670 ;24.830 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 542 ;16.979 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;14.210 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 481 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2323 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1887 ; 0.662 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3040 ; 1.267 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1217 ; 1.571 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1166 ; 2.685 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4JWF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-APR-13. REMARK 100 THE RCSB ID CODE IS RCSB078589. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18531 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 51.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12200 REMARK 200 FOR THE DATA SET : 16.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.20 REMARK 200 R MERGE FOR SHELL (I) : 0.44900 REMARK 200 R SYM FOR SHELL (I) : 0.44900 REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 6000, 0.1M NA ACETATE, PH 5.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.78500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.78000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.58000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.78000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.78500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.58000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 65 REMARK 465 GLY A 66 REMARK 465 HIS A 67 REMARK 465 HIS A 68 REMARK 465 HIS A 69 REMARK 465 HIS A 70 REMARK 465 HIS A 71 REMARK 465 HIS A 72 REMARK 465 MSE A 73 REMARK 465 ALA A 74 REMARK 465 GLY A 75 REMARK 465 GLU A 76 REMARK 465 VAL A 77 REMARK 465 VAL A 78 REMARK 465 LYS A 79 REMARK 465 SER A 80 REMARK 465 GLN A 81 REMARK 465 LYS A 82 REMARK 465 LYS A 83 REMARK 465 LYS A 271 REMARK 465 ARG A 272 REMARK 465 LYS A 273 REMARK 465 GLY A 274 REMARK 465 ILE A 275 REMARK 465 LEU A 276 REMARK 465 LEU A 277 REMARK 465 LYS A 278 REMARK 465 SER A 279 REMARK 465 ASP A 280 REMARK 465 GLU A 281 REMARK 465 MSE B 65 REMARK 465 GLY B 66 REMARK 465 HIS B 67 REMARK 465 HIS B 68 REMARK 465 HIS B 69 REMARK 465 HIS B 70 REMARK 465 HIS B 71 REMARK 465 HIS B 72 REMARK 465 MSE B 73 REMARK 465 ALA B 74 REMARK 465 GLY B 75 REMARK 465 GLU B 76 REMARK 465 VAL B 77 REMARK 465 VAL B 78 REMARK 465 LYS B 79 REMARK 465 SER B 80 REMARK 465 GLN B 81 REMARK 465 LYS B 82 REMARK 465 LYS B 83 REMARK 465 LYS B 271 REMARK 465 ARG B 272 REMARK 465 LYS B 273 REMARK 465 GLY B 274 REMARK 465 ILE B 275 REMARK 465 LEU B 276 REMARK 465 LEU B 277 REMARK 465 LYS B 278 REMARK 465 SER B 279 REMARK 465 ASP B 280 REMARK 465 GLU B 281 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 155 CG CD OE1 NE2 REMARK 470 GLU A 174 CG CD OE1 OE2 REMARK 470 LYS A 236 CG CD CE NZ REMARK 470 ILE A 237 CG1 CG2 CD1 REMARK 470 THR A 238 OG1 CG2 REMARK 470 ASP A 239 CG OD1 OD2 REMARK 470 ARG A 240 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 241 CG CD CE NZ REMARK 470 ARG B 84 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 153 CG CD CE NZ REMARK 470 GLN B 155 CG CD OE1 NE2 REMARK 470 GLU B 233 CG CD OE1 OE2 REMARK 470 ARG B 240 CG CD NE CZ NH1 NH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 89 CG CD CE NZ REMARK 480 LYS A 160 CG CD CE NZ REMARK 480 LYS A 208 CG CD CE NZ REMARK 480 LYS A 212 CG CD CE NZ REMARK 480 LYS B 89 CG CD CE NZ REMARK 480 LYS B 160 CG CD CE NZ REMARK 480 GLU B 174 CG CD OE1 OE2 REMARK 480 LYS B 208 CG CD CE NZ REMARK 480 LYS B 263 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 233 N - CA - C ANGL. DEV. = -16.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 230 44.11 -78.41 REMARK 500 ASP A 232 22.61 83.81 REMARK 500 LYS A 236 -71.65 -107.44 REMARK 500 THR A 238 -65.91 -139.87 REMARK 500 LEU B 152 78.98 57.74 REMARK 500 LYS B 153 81.87 -65.89 REMARK 500 GLN B 176 33.40 -140.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JWG RELATED DB: PDB REMARK 900 RELATED ID: 4JWH RELATED DB: PDB REMARK 900 RELATED ID: 4JWJ RELATED DB: PDB DBREF 4JWF A 74 281 UNP O14214 TRM10_SCHPO 74 281 DBREF 4JWF B 74 281 UNP O14214 TRM10_SCHPO 74 281 SEQADV 4JWF MSE A 65 UNP O14214 EXPRESSION TAG SEQADV 4JWF GLY A 66 UNP O14214 EXPRESSION TAG SEQADV 4JWF HIS A 67 UNP O14214 EXPRESSION TAG SEQADV 4JWF HIS A 68 UNP O14214 EXPRESSION TAG SEQADV 4JWF HIS A 69 UNP O14214 EXPRESSION TAG SEQADV 4JWF HIS A 70 UNP O14214 EXPRESSION TAG SEQADV 4JWF HIS A 71 UNP O14214 EXPRESSION TAG SEQADV 4JWF HIS A 72 UNP O14214 EXPRESSION TAG SEQADV 4JWF MSE A 73 UNP O14214 EXPRESSION TAG SEQADV 4JWF MSE B 65 UNP O14214 EXPRESSION TAG SEQADV 4JWF GLY B 66 UNP O14214 EXPRESSION TAG SEQADV 4JWF HIS B 67 UNP O14214 EXPRESSION TAG SEQADV 4JWF HIS B 68 UNP O14214 EXPRESSION TAG SEQADV 4JWF HIS B 69 UNP O14214 EXPRESSION TAG SEQADV 4JWF HIS B 70 UNP O14214 EXPRESSION TAG SEQADV 4JWF HIS B 71 UNP O14214 EXPRESSION TAG SEQADV 4JWF HIS B 72 UNP O14214 EXPRESSION TAG SEQADV 4JWF MSE B 73 UNP O14214 EXPRESSION TAG SEQRES 1 A 217 MSE GLY HIS HIS HIS HIS HIS HIS MSE ALA GLY GLU VAL SEQRES 2 A 217 VAL LYS SER GLN LYS LYS ARG ILE ARG LEU GLY LYS VAL SEQRES 3 A 217 VAL PRO SER SER ILE ARG ILE VAL LEU ASP CYS ALA PHE SEQRES 4 A 217 ASP ASP LEU MSE ASN ASP LYS GLU ILE ASN SER LEU CYS SEQRES 5 A 217 GLN GLN VAL THR ARG CYS HIS SER ALA ASN ARG THR ALA SEQRES 6 A 217 LEU HIS PRO VAL GLU LEU PHE ALA THR ASN PHE GLY GLY SEQRES 7 A 217 ARG LEU LYS THR ARG GLN ASP PHE VAL LEU LYS GLY GLN SEQRES 8 A 217 GLN ASN ASN TRP LYS ARG TYR ASN PRO THR THR LYS SER SEQRES 9 A 217 TYR LEU GLU GLU PHE GLU SER GLN LYS GLU LYS LEU VAL SEQRES 10 A 217 TYR LEU SER ALA ASP SER ASP ASN THR ILE THR GLU LEU SEQRES 11 A 217 ASP GLU ASP LYS ILE TYR ILE ILE GLY ALA ILE VAL ASP SEQRES 12 A 217 LYS ASN ARG TYR LYS ASN LEU CYS GLN ASN LYS ALA SER SEQRES 13 A 217 GLU GLN GLY ILE LYS THR ALA LYS LEU PRO ILE ASP GLU SEQRES 14 A 217 TYR ILE LYS ILE THR ASP ARG LYS ILE LEU THR VAL ASN SEQRES 15 A 217 GLN VAL PHE GLU ILE LEU SER LEU TRP LEU GLU TYR ARG SEQRES 16 A 217 ASP TRP GLU LYS ALA PHE MSE GLU VAL ILE PRO LYS ARG SEQRES 17 A 217 LYS GLY ILE LEU LEU LYS SER ASP GLU SEQRES 1 B 217 MSE GLY HIS HIS HIS HIS HIS HIS MSE ALA GLY GLU VAL SEQRES 2 B 217 VAL LYS SER GLN LYS LYS ARG ILE ARG LEU GLY LYS VAL SEQRES 3 B 217 VAL PRO SER SER ILE ARG ILE VAL LEU ASP CYS ALA PHE SEQRES 4 B 217 ASP ASP LEU MSE ASN ASP LYS GLU ILE ASN SER LEU CYS SEQRES 5 B 217 GLN GLN VAL THR ARG CYS HIS SER ALA ASN ARG THR ALA SEQRES 6 B 217 LEU HIS PRO VAL GLU LEU PHE ALA THR ASN PHE GLY GLY SEQRES 7 B 217 ARG LEU LYS THR ARG GLN ASP PHE VAL LEU LYS GLY GLN SEQRES 8 B 217 GLN ASN ASN TRP LYS ARG TYR ASN PRO THR THR LYS SER SEQRES 9 B 217 TYR LEU GLU GLU PHE GLU SER GLN LYS GLU LYS LEU VAL SEQRES 10 B 217 TYR LEU SER ALA ASP SER ASP ASN THR ILE THR GLU LEU SEQRES 11 B 217 ASP GLU ASP LYS ILE TYR ILE ILE GLY ALA ILE VAL ASP SEQRES 12 B 217 LYS ASN ARG TYR LYS ASN LEU CYS GLN ASN LYS ALA SER SEQRES 13 B 217 GLU GLN GLY ILE LYS THR ALA LYS LEU PRO ILE ASP GLU SEQRES 14 B 217 TYR ILE LYS ILE THR ASP ARG LYS ILE LEU THR VAL ASN SEQRES 15 B 217 GLN VAL PHE GLU ILE LEU SER LEU TRP LEU GLU TYR ARG SEQRES 16 B 217 ASP TRP GLU LYS ALA PHE MSE GLU VAL ILE PRO LYS ARG SEQRES 17 B 217 LYS GLY ILE LEU LEU LYS SER ASP GLU MODRES 4JWF MSE A 107 MET SELENOMETHIONINE MODRES 4JWF MSE A 266 MET SELENOMETHIONINE MODRES 4JWF MSE B 107 MET SELENOMETHIONINE MODRES 4JWF MSE B 266 MET SELENOMETHIONINE HET MSE A 107 8 HET MSE A 266 8 HET MSE B 107 8 HET MSE B 266 8 HET SAH A 301 26 HET ACY A 302 4 HET ACY A 303 4 HET SAH B 301 26 HET ACY B 302 4 HETNAM MSE SELENOMETHIONINE HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM ACY ACETIC ACID FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 SAH 2(C14 H20 N6 O5 S) FORMUL 4 ACY 3(C2 H4 O2) FORMUL 8 HOH *111(H2 O) HELIX 1 1 PHE A 103 MSE A 107 5 5 HELIX 2 2 ASN A 108 THR A 128 1 21 HELIX 3 3 GLY A 141 LYS A 153 1 13 HELIX 4 4 GLY A 154 TRP A 159 5 6 HELIX 5 5 SER A 168 PHE A 173 1 6 HELIX 6 6 GLN A 176 GLU A 178 5 3 HELIX 7 7 ASN A 213 GLY A 223 1 11 HELIX 8 8 THR A 244 ARG A 259 1 16 HELIX 9 9 ASP A 260 ILE A 269 1 10 HELIX 10 10 PHE B 103 MSE B 107 5 5 HELIX 11 11 ASN B 108 THR B 128 1 21 HELIX 12 12 GLY B 141 VAL B 151 1 11 HELIX 13 13 GLY B 154 TRP B 159 5 6 HELIX 14 14 SER B 168 PHE B 173 1 6 HELIX 15 15 GLU B 174 GLU B 178 5 5 HELIX 16 16 ASN B 213 GLN B 222 1 10 HELIX 17 17 ILE B 231 THR B 238 1 8 HELIX 18 18 THR B 244 ARG B 259 1 16 HELIX 19 19 ASP B 260 ILE B 269 1 10 SHEET 1 A 6 TYR A 162 PRO A 164 0 SHEET 2 A 6 GLU A 134 THR A 138 1 N ALA A 137 O ASN A 163 SHEET 3 A 6 ARG A 96 ASP A 100 1 N ILE A 97 O PHE A 136 SHEET 4 A 6 ILE A 199 GLY A 203 1 O ILE A 202 N VAL A 98 SHEET 5 A 6 LEU A 180 LEU A 183 1 N VAL A 181 O ILE A 201 SHEET 6 A 6 LYS A 225 ALA A 227 1 O LYS A 225 N TYR A 182 SHEET 1 B 2 ASN A 189 ILE A 191 0 SHEET 2 B 2 ILE B 85 LEU B 87 -1 O ARG B 86 N THR A 190 SHEET 1 C 6 TYR B 162 PRO B 164 0 SHEET 2 C 6 GLU B 134 THR B 138 1 N LEU B 135 O ASN B 163 SHEET 3 C 6 ARG B 96 ASP B 100 1 N LEU B 99 O PHE B 136 SHEET 4 C 6 ILE B 199 GLY B 203 1 O ILE B 202 N VAL B 98 SHEET 5 C 6 LEU B 180 LEU B 183 1 N VAL B 181 O ILE B 199 SHEET 6 C 6 LYS B 225 ALA B 227 1 O LYS B 225 N TYR B 182 LINK C LEU A 106 N MSE A 107 1555 1555 1.33 LINK C MSE A 107 N ASN A 108 1555 1555 1.33 LINK C PHE A 265 N MSE A 266 1555 1555 1.33 LINK C MSE A 266 N GLU A 267 1555 1555 1.33 LINK C LEU B 106 N MSE B 107 1555 1555 1.33 LINK C MSE B 107 N ASN B 108 1555 1555 1.34 LINK C PHE B 265 N MSE B 266 1555 1555 1.34 LINK C MSE B 266 N GLU B 267 1555 1555 1.33 CISPEP 1 ILE A 237 THR A 238 0 -2.76 SITE 1 AC1 20 LEU A 183 SER A 184 ALA A 185 ILE A 202 SITE 2 AC1 20 GLY A 203 ILE A 205 ASP A 207 ASN A 209 SITE 3 AC1 20 TYR A 211 LEU A 214 CYS A 215 LYS A 228 SITE 4 AC1 20 LEU A 229 LYS A 241 ILE A 242 LEU A 243 SITE 5 AC1 20 VAL A 248 HOH A 431 HOH A 432 HOH A 439 SITE 1 AC2 1 ARG A 147 SITE 1 AC3 3 ASN A 113 SER A 114 GLN A 117 SITE 1 AC4 19 LEU B 183 SER B 184 ALA B 185 ILE B 202 SITE 2 AC4 19 GLY B 203 ILE B 205 ASP B 207 ASN B 209 SITE 3 AC4 19 TYR B 211 LEU B 214 CYS B 215 LYS B 228 SITE 4 AC4 19 LEU B 229 LEU B 243 VAL B 248 HOH B 401 SITE 5 AC4 19 HOH B 424 HOH B 434 HOH B 436 SITE 1 AC5 7 LYS A 212 ASN A 213 LEU A 214 ASN A 217 SITE 2 AC5 7 LEU B 106 ARG B 210 TYR B 211 CRYST1 51.570 73.160 119.560 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019391 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013669 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008364 0.00000