HEADER HYDROLASE 27-MAR-13 4JWT TITLE CRYSTAL STRUCTURE OF A PUTATIVE 5'-METHYLTHIOADENOSINE/S- TITLE 2 ADENOSYLHOMOCYSTEINE NUCLEOSIDASE FROM SULFURIMONAS DENITRIFICANS DSM TITLE 3 1251 (TARGET NYSGRC-029304 ) COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHYLTHIOADENOSINE NUCLEOSIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.2.16; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFURIMONAS DENITRIFICANS; SOURCE 3 ORGANISM_TAXID: 326298; SOURCE 4 STRAIN: DSM 1251; SOURCE 5 GENE: SUDEN_1392; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODONPLUS RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSGC-HIS KEYWDS SULFURIMONAS DENITRIFICANS, 5'-METHYLTHIOADENOSINE/S- KEYWDS 2 ADENOSYLHOMOCYSTEINE NUCLEOSIDASE, ADENINE, STRUCTURAL GENOMICS, KEYWDS 3 NYSGRC, NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM, PSI- KEYWDS 4 BIOLOGY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.SAMPATHKUMAR,S.C.ALMO,NEW YORK STRUCTURAL GENOMICS RESEARCH AUTHOR 2 CONSORTIUM (NYSGRC) REVDAT 4 30-OCT-24 4JWT 1 REMARK SEQADV LINK REVDAT 3 15-NOV-17 4JWT 1 REMARK REVDAT 2 27-NOV-13 4JWT 1 KEYWDS REVDAT 1 08-MAY-13 4JWT 0 JRNL AUTH P.SAMPATHKUMAR,A.GIZZI,M.AHMED,N.BANU,R.BHOSLE,J.BONANNO, JRNL AUTH 2 S.CHAMALA,S.CHOWDHURY,A.FISER,A.S.GLENN,J.HAMMONDS, JRNL AUTH 3 B.HILLERICH,K.KHAFIZOV,J.LAFLEUR,J.SUAREZ,A.HAAPALAINEN, JRNL AUTH 4 J.D.LOVE,M.STEAD,R.SEIDEL,R.TORO,V.L.SCHRAMM,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE JRNL TITL 2 5'-METHYLTHIOADENOSINE/S-ADENOSYLHOMOCYSTEINE NUCLEOSIDASE JRNL TITL 3 FROM SULFURIMONAS DENITRIFICANS DSM 1251 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 26403 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1314 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.11 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1797 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1851 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 139 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.26000 REMARK 3 B22 (A**2) : 0.26000 REMARK 3 B33 (A**2) : -0.83000 REMARK 3 B12 (A**2) : 0.26000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.129 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.115 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.081 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.987 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1941 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1860 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2620 ; 1.285 ; 1.998 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4311 ; 0.718 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 256 ; 5.912 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 76 ;32.045 ;25.921 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 307 ;12.816 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;12.282 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 297 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2188 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 407 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY. AUTHORS NOTE AN REMARK 3 ELECTRON DENSITY FEATURE JUST BELOW ADENINE, WHICH COULD NOT BE REMARK 3 SATISFACTORILY EXPLAINED WITH BUFFER OR CRYSTALLIZATION REMARK 3 COMPONENTS. REMARK 4 REMARK 4 4JWT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000078603. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97910 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26487 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 22.80 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.7500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 23.10 REMARK 200 R MERGE FOR SHELL (I) : 0.73800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.420 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX C, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (20MM HEPES PH7.5, 150MM NACL, REMARK 280 5% GLYCEROL, AND 5MM DTT); RESERVOIR (MCSG3 #84; 0.1 M SODIUM REMARK 280 ACETATE:HCL PH 4.6, 2.0 M SODIUM FORMATE ); CRYOPROTECTION (33% REMARK 280 ETHYLENE GLYCOL), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 152.28333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 76.14167 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 114.21250 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 38.07083 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 190.35417 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 152.28333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 76.14167 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 38.07083 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 114.21250 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 190.35417 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 38.79900 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 67.20184 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 38.07083 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 457 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 LEU A 233 REMARK 465 GLN A 234 REMARK 465 ASP A 235 REMARK 465 ILE A 236 REMARK 465 LYS A 237 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 49 163.04 87.62 REMARK 500 ASP A 149 33.58 -87.28 REMARK 500 ASN A 154 114.66 -162.96 REMARK 500 GLU A 173 -30.75 -138.35 REMARK 500 ASP A 199 -161.65 -122.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADE A 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-029304 RELATED DB: TARGETTRACK DBREF 4JWT A 2 237 UNP Q30QR2 Q30QR2_SULDN 2 237 SEQADV 4JWT MSE A -21 UNP Q30QR2 EXPRESSION TAG SEQADV 4JWT HIS A -20 UNP Q30QR2 EXPRESSION TAG SEQADV 4JWT HIS A -19 UNP Q30QR2 EXPRESSION TAG SEQADV 4JWT HIS A -18 UNP Q30QR2 EXPRESSION TAG SEQADV 4JWT HIS A -17 UNP Q30QR2 EXPRESSION TAG SEQADV 4JWT HIS A -16 UNP Q30QR2 EXPRESSION TAG SEQADV 4JWT HIS A -15 UNP Q30QR2 EXPRESSION TAG SEQADV 4JWT SER A -14 UNP Q30QR2 EXPRESSION TAG SEQADV 4JWT SER A -13 UNP Q30QR2 EXPRESSION TAG SEQADV 4JWT GLY A -12 UNP Q30QR2 EXPRESSION TAG SEQADV 4JWT VAL A -11 UNP Q30QR2 EXPRESSION TAG SEQADV 4JWT ASP A -10 UNP Q30QR2 EXPRESSION TAG SEQADV 4JWT LEU A -9 UNP Q30QR2 EXPRESSION TAG SEQADV 4JWT GLY A -8 UNP Q30QR2 EXPRESSION TAG SEQADV 4JWT THR A -7 UNP Q30QR2 EXPRESSION TAG SEQADV 4JWT GLU A -6 UNP Q30QR2 EXPRESSION TAG SEQADV 4JWT ASN A -5 UNP Q30QR2 EXPRESSION TAG SEQADV 4JWT LEU A -4 UNP Q30QR2 EXPRESSION TAG SEQADV 4JWT TYR A -3 UNP Q30QR2 EXPRESSION TAG SEQADV 4JWT PHE A -2 UNP Q30QR2 EXPRESSION TAG SEQADV 4JWT GLN A -1 UNP Q30QR2 EXPRESSION TAG SEQADV 4JWT SER A 0 UNP Q30QR2 EXPRESSION TAG SEQADV 4JWT MSE A 1 UNP Q30QR2 EXPRESSION TAG SEQRES 1 A 259 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 259 GLY THR GLU ASN LEU TYR PHE GLN SER MSE LYS ILE ALA SEQRES 3 A 259 ILE MSE GLY ALA MSE PRO GLU GLU ILE SER PRO ILE LEU SEQRES 4 A 259 GLU LYS ILE GLY SER TYR LYS SER THR SER TYR ALA GLY SEQRES 5 A 259 ASN LYS TYR TYR GLU ALA THR TYR GLN GLY VAL GLU LEU SEQRES 6 A 259 VAL ILE ALA TYR SER LYS ILE GLY LYS VAL PHE SER ALA SEQRES 7 A 259 LEU SER ALA ALA THR MSE ILE GLU HIS PHE GLY ALA THR SEQRES 8 A 259 LYS LEU LEU PHE SER GLY VAL ALA GLY ALA ILE SER THR SEQRES 9 A 259 ASN LEU LYS VAL GLY ASP LEU ILE VAL ALA THR LYS LEU SEQRES 10 A 259 SER GLN HIS ASP LEU ASP ILE THR ALA PHE GLY HIS PRO SEQRES 11 A 259 TYR GLY TYR VAL PRO GLU GLY SER VAL PHE VAL GLU ALA SEQRES 12 A 259 ASP LYS ASP MSE ILE GLU LEU SER LYS LYS VAL ALA LEU SEQRES 13 A 259 GLU MSE GLY LYS SER VAL GLN GLU GLY ILE ILE ALA THR SEQRES 14 A 259 GLY ASP GLN PHE VAL ALA ASN GLU GLU ARG LYS ASN TRP SEQRES 15 A 259 ILE GLY THR THR PHE GLY ALA ASP ALA LEU GLU MSE GLU SEQRES 16 A 259 GLY GLY SER VAL GLY VAL VAL CYS ASN ALA LEU ASN ILE SEQRES 17 A 259 PRO PHE PHE ILE LEU ARG SER ILE SER ASP ALA ALA ASP SEQRES 18 A 259 MSE ASP ALA SER PHE SER PHE ASP GLU PHE LEU GLU SER SEQRES 19 A 259 SER ALA LYS GLU SER ALA GLU PHE ILE MSE LYS MSE VAL SEQRES 20 A 259 ASP GLU LEU VAL ALA LEU PRO LEU GLN ASP ILE LYS MODRES 4JWT MSE A 1 MET SELENOMETHIONINE MODRES 4JWT MSE A 6 MET SELENOMETHIONINE MODRES 4JWT MSE A 9 MET SELENOMETHIONINE MODRES 4JWT MSE A 62 MET SELENOMETHIONINE MODRES 4JWT MSE A 125 MET SELENOMETHIONINE MODRES 4JWT MSE A 136 MET SELENOMETHIONINE MODRES 4JWT MSE A 172 MET SELENOMETHIONINE MODRES 4JWT MSE A 200 MET SELENOMETHIONINE MODRES 4JWT MSE A 222 MET SELENOMETHIONINE MODRES 4JWT MSE A 224 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 6 8 HET MSE A 9 8 HET MSE A 62 8 HET MSE A 125 8 HET MSE A 136 8 HET MSE A 172 8 HET MSE A 200 13 HET MSE A 222 8 HET MSE A 224 8 HET EDO A 301 4 HET EDO A 302 4 HET EDO A 303 4 HET EDO A 304 4 HET ADE A 305 10 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETNAM ADE ADENINE HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 2 EDO 4(C2 H6 O2) FORMUL 6 ADE C5 H5 N5 FORMUL 7 HOH *139(H2 O) HELIX 1 1 THR A -7 TYR A -3 5 5 HELIX 2 2 MSE A 9 GLY A 21 1 13 HELIX 3 3 GLY A 51 HIS A 65 1 15 HELIX 4 4 ILE A 102 GLY A 106 5 5 HELIX 5 5 ASP A 122 GLY A 137 1 16 HELIX 6 6 ASN A 154 GLY A 166 1 13 HELIX 7 7 GLU A 173 LEU A 184 1 12 HELIX 8 8 ASP A 201 LEU A 231 1 31 SHEET 1 A 9 LYS A 24 TYR A 28 0 SHEET 2 A 9 ASN A 31 TYR A 38 -1 O TYR A 33 N THR A 26 SHEET 3 A 9 VAL A 41 TYR A 47 -1 O ILE A 45 N TYR A 34 SHEET 4 A 9 LYS A 2 GLY A 7 1 N ILE A 5 O VAL A 44 SHEET 5 A 9 LYS A 70 ALA A 79 1 O LEU A 72 N ALA A 4 SHEET 6 A 9 ALA A 169 GLU A 171 -1 O LEU A 170 N GLY A 78 SHEET 7 A 9 VAL A 140 THR A 147 1 N ALA A 146 O ALA A 169 SHEET 8 A 9 LEU A 89 GLN A 97 1 N SER A 96 O THR A 147 SHEET 9 A 9 VAL A 119 GLU A 120 -1 O VAL A 119 N LEU A 95 SHEET 1 B 8 LYS A 24 TYR A 28 0 SHEET 2 B 8 ASN A 31 TYR A 38 -1 O TYR A 33 N THR A 26 SHEET 3 B 8 VAL A 41 TYR A 47 -1 O ILE A 45 N TYR A 34 SHEET 4 B 8 LYS A 2 GLY A 7 1 N ILE A 5 O VAL A 44 SHEET 5 B 8 LYS A 70 ALA A 79 1 O LEU A 72 N ALA A 4 SHEET 6 B 8 PHE A 188 ASP A 196 1 O SER A 195 N ALA A 77 SHEET 7 B 8 LEU A 89 GLN A 97 -1 N ILE A 90 O ARG A 192 SHEET 8 B 8 VAL A 119 GLU A 120 -1 O VAL A 119 N LEU A 95 LINK C SER A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N LYS A 2 1555 1555 1.33 LINK C ILE A 5 N MSE A 6 1555 1555 1.32 LINK C MSE A 6 N GLY A 7 1555 1555 1.33 LINK C ALA A 8 N MSE A 9 1555 1555 1.34 LINK C MSE A 9 N PRO A 10 1555 1555 1.35 LINK C THR A 61 N MSE A 62 1555 1555 1.32 LINK C MSE A 62 N ILE A 63 1555 1555 1.34 LINK C ASP A 124 N MSE A 125 1555 1555 1.33 LINK C MSE A 125 N ILE A 126 1555 1555 1.32 LINK C GLU A 135 N MSE A 136 1555 1555 1.33 LINK C MSE A 136 N GLY A 137 1555 1555 1.33 LINK C GLU A 171 N MSE A 172 1555 1555 1.32 LINK C MSE A 172 N GLU A 173 1555 1555 1.34 LINK C ASP A 199 N MSE A 200 1555 1555 1.33 LINK C MSE A 200 N ASP A 201 1555 1555 1.33 LINK C ILE A 221 N MSE A 222 1555 1555 1.33 LINK C MSE A 222 N LYS A 223 1555 1555 1.33 LINK C LYS A 223 N MSE A 224 1555 1555 1.33 LINK C MSE A 224 N VAL A 225 1555 1555 1.33 SITE 1 AC1 4 TYR A 28 ALA A 29 GLY A 30 ASN A 185 SITE 1 AC2 5 GLU A 120 ALA A 121 ASP A 122 LYS A 123 SITE 2 AC2 5 HOH A 443 SITE 1 AC3 4 TYR A -3 PHE A 105 HOH A 407 HOH A 511 SITE 1 AC4 5 ASN A 182 ASN A 185 HOH A 487 HOH A 514 SITE 2 AC4 5 HOH A 515 SITE 1 AC5 12 VAL A 76 ALA A 77 GLY A 78 GLN A 150 SITE 2 AC5 12 PHE A 151 VAL A 152 LEU A 170 GLU A 171 SITE 3 AC5 12 MSE A 172 SER A 195 ASP A 196 ALA A 198 CRYST1 77.598 77.598 228.425 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012887 0.007440 0.000000 0.00000 SCALE2 0.000000 0.014881 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004378 0.00000