HEADER TRANSPORT PROTEIN 27-MAR-13 4JWY TITLE GLUN2D LIGAND-BINDING CORE IN COMPLEX WITH PROPYL-NHP5G COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMATE RECEPTOR IONOTROPIC, NMDA 2D; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LIGAND BINDING DOMAIN; COMPND 5 SYNONYM: GLUN2D, GLUTAMATE [NMDA] RECEPTOR SUBUNIT EPSILON-4, N- COMPND 6 METHYL D-ASPARTATE RECEPTOR SUBTYPE 2D, NMDAR2D, NR2D; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: BROWN RAT,RAT,RATS; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: GRIN2D, GLUN2D; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ORIGAMI B (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22 KEYWDS BILOBED STRUCTURE, ION CHANNEL, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.B.HANSEN,N.TAJIMA,R.RISGAARD,R.E.PERSZYK,L.JORGENSEN,K.M.VANCE, AUTHOR 2 K.K.OGDEN,R.P.CLAUSEN,H.FURUKAWA,S.F.TRAYNELIS REVDAT 4 20-SEP-23 4JWY 1 REMARK SEQADV REVDAT 3 02-AUG-17 4JWY 1 SOURCE REMARK REVDAT 2 17-JUL-13 4JWY 1 JRNL REVDAT 1 29-MAY-13 4JWY 0 JRNL AUTH K.B.HANSEN,N.TAJIMA,R.RISGAARD,R.E.PERSZYK,L.JORGENSEN, JRNL AUTH 2 K.M.VANCE,K.K.OGDEN,R.P.CLAUSEN,H.FURUKAWA,S.F.TRAYNELIS JRNL TITL STRUCTURAL DETERMINANTS OF AGONIST EFFICACY AT THE GLUTAMATE JRNL TITL 2 BINDING SITE OF N-METHYL-D-ASPARTATE RECEPTORS. JRNL REF MOL.PHARMACOL. V. 84 114 2013 JRNL REFN ISSN 0026-895X JRNL PMID 23625947 JRNL DOI 10.1124/MOL.113.085803 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.890 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 22086 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 1135 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.4571 - 3.9900 0.89 2467 145 0.1753 0.1914 REMARK 3 2 3.9900 - 3.1715 1.00 2700 140 0.1702 0.2161 REMARK 3 3 3.1715 - 2.7719 1.00 2650 161 0.2114 0.2635 REMARK 3 4 2.7719 - 2.5190 1.00 2625 144 0.2176 0.2986 REMARK 3 5 2.5190 - 2.3388 0.99 2665 135 0.2084 0.2614 REMARK 3 6 2.3388 - 2.2011 1.00 2615 135 0.2109 0.2746 REMARK 3 7 2.2011 - 2.0910 0.99 2614 135 0.2082 0.2308 REMARK 3 8 2.0910 - 2.0000 1.00 2615 140 0.2322 0.3216 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.050 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2195 REMARK 3 ANGLE : 1.172 2976 REMARK 3 CHIRALITY : 0.078 329 REMARK 3 PLANARITY : 0.005 386 REMARK 3 DIHEDRAL : 14.829 820 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JWY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000078608. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.10 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22209 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3OEN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM CAPS, 3.5-4.5 M SODIUM FORMATE, REMARK 280 8-12% 1,4-BUTANEDIOL, PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.84750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.84750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 29.99800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.94950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 29.99800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.94950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 47.84750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 29.99800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 56.94950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 47.84750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 29.99800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 56.94950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 401 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 475 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 489 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 493 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 ASP A 2 REMARK 465 ASP A 3 REMARK 465 THR A 4 REMARK 465 ARG A 43 REMARK 465 THR A 44 REMARK 465 HIS A 45 REMARK 465 SER A 46 REMARK 465 PRO A 47 REMARK 465 PRO A 48 REMARK 465 PRO A 49 REMARK 465 ASP A 50 REMARK 465 ALA A 51 REMARK 465 PRO A 52 REMARK 465 ARG A 53 REMARK 465 PRO A 54 REMARK 465 ASN A 286 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 THR A 144 REMARK 475 THR A 145 REMARK 475 LYS A 238 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 5 CG CD OE1 NE2 REMARK 480 ILE A 31 CG1 CD1 REMARK 480 ARG A 32 CG CD NE CZ NH1 NH2 REMARK 480 ASP A 33 CG OD1 OD2 REMARK 480 ARG A 38 CD CZ REMARK 480 GLU A 55 CB CG CD OE1 OE2 REMARK 480 ARG A 57 NE CZ NH1 NH2 REMARK 480 GLN A 106 NE2 REMARK 480 GLU A 119 CD OE1 OE2 REMARK 480 GLU A 123 OE1 REMARK 480 ARG A 142 CZ NH1 NH2 REMARK 480 GLY A 143 CA C O REMARK 480 VAL A 146 CG1 CG2 REMARK 480 SER A 147 CB OG REMARK 480 LEU A 149 CD1 CD2 REMARK 480 SER A 150 OG REMARK 480 ARG A 152 CB CG CD NE CZ NH1 NH2 REMARK 480 LYS A 153 CG CD CE NZ REMARK 480 GLN A 155 CA CB CG CD OE1 NE2 REMARK 480 ARG A 156 NH1 NH2 REMARK 480 GLN A 158 CG CD OE1 NE2 REMARK 480 GLU A 159 CB CG CD OE1 OE2 REMARK 480 GLN A 160 CG CD OE1 NE2 REMARK 480 TYR A 161 CB CG CD1 CD2 CE1 CE2 CZ REMARK 480 TYR A 161 OH REMARK 480 LYS A 176 CE NZ REMARK 480 ARG A 179 CD NE CZ NH1 NH2 REMARK 480 SER A 180 OG REMARK 480 SER A 187 OG REMARK 480 ARG A 191 CZ NH1 NH2 REMARK 480 GLU A 198 CG OE2 REMARK 480 LYS A 205 CE NZ REMARK 480 LYS A 208 CD CE NZ REMARK 480 LYS A 225 CD CE NZ REMARK 480 GLU A 227 CG CD OE1 OE2 REMARK 480 LYS A 230 CD CE NZ REMARK 480 GLY A 235 CA REMARK 480 SER A 236 CA REMARK 480 GLY A 237 CA C O REMARK 480 VAL A 239 CG1 CG2 REMARK 480 ALA A 241 CA CB REMARK 480 ARG A 254 CG CD NE CZ NH1 NH2 REMARK 480 GLN A 265 NE2 REMARK 480 LEU A 267 CD2 REMARK 480 GLU A 273 CG CD OE1 OE2 REMARK 480 ILE A 283 CD1 REMARK 480 HIS A 285 CB CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 187 O HOH A 541 2.12 REMARK 500 O HOH A 516 O HOH A 518 2.13 REMARK 500 OE1 GLU A 21 O HOH A 536 2.14 REMARK 500 O HOH A 521 O HOH A 542 2.16 REMARK 500 O HOH A 577 O HOH A 578 2.16 REMARK 500 OD1 ASP A 151 N LYS A 153 2.16 REMARK 500 OD1 ASP A 33 O HOH A 506 2.17 REMARK 500 O LYS A 56 O HOH A 559 2.17 REMARK 500 OG SER A 173 OAE 1N4 A 301 2.18 REMARK 500 O HOH A 567 O HOH A 568 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 55 CA - C - N ANGL. DEV. = 13.9 DEGREES REMARK 500 GLU A 55 O - C - N ANGL. DEV. = -14.5 DEGREES REMARK 500 PRO A 162 C - N - CD ANGL. DEV. = 13.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 14 102.59 -160.82 REMARK 500 ARG A 32 -139.01 57.89 REMARK 500 LYS A 87 -105.84 -124.25 REMARK 500 ASN A 97 -168.83 -115.00 REMARK 500 THR A 144 133.32 -31.49 REMARK 500 SER A 147 -72.25 -73.73 REMARK 500 ASN A 171 1.05 83.34 REMARK 500 GLU A 227 108.53 -58.70 REMARK 500 LYS A 238 -12.12 -140.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1N4 A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JWX RELATED DB: PDB DBREF 4JWY A 2 142 UNP Q62645 NMDE4_RAT 424 564 DBREF 4JWY A 145 286 UNP Q62645 NMDE4_RAT 686 827 SEQADV 4JWY SER A 1 UNP Q62645 EXPRESSION TAG SEQADV 4JWY GLY A 143 UNP Q62645 LINKER SEQADV 4JWY THR A 144 UNP Q62645 LINKER SEQRES 1 A 286 SER ASP ASP THR GLN HIS LEU THR VAL ALA THR LEU GLU SEQRES 2 A 286 GLU ARG PRO PHE VAL ILE VAL GLU PRO ALA ASP PRO ILE SEQRES 3 A 286 SER GLY THR CYS ILE ARG ASP SER VAL PRO CYS ARG SER SEQRES 4 A 286 GLN LEU ASN ARG THR HIS SER PRO PRO PRO ASP ALA PRO SEQRES 5 A 286 ARG PRO GLU LYS ARG CYS CYS LYS GLY PHE CYS ILE ASP SEQRES 6 A 286 ILE LEU LYS ARG LEU ALA HIS THR ILE GLY PHE SER TYR SEQRES 7 A 286 ASP LEU TYR LEU VAL THR ASN GLY LYS HIS GLY LYS LYS SEQRES 8 A 286 ILE ASP GLY VAL TRP ASN GLY MET ILE GLY GLU VAL PHE SEQRES 9 A 286 TYR GLN ARG ALA ASP MET ALA ILE GLY SER LEU THR ILE SEQRES 10 A 286 ASN GLU GLU ARG SER GLU ILE VAL ASP PHE SER VAL PRO SEQRES 11 A 286 PHE VAL GLU THR GLY ILE SER VAL MET VAL ALA ARG GLY SEQRES 12 A 286 THR THR VAL SER GLY LEU SER ASP ARG LYS PHE GLN ARG SEQRES 13 A 286 PRO GLN GLU GLN TYR PRO PRO LEU LYS PHE GLY THR VAL SEQRES 14 A 286 PRO ASN GLY SER THR GLU LYS ASN ILE ARG SER ASN TYR SEQRES 15 A 286 PRO ASP MET HIS SER TYR MET VAL ARG TYR ASN GLN PRO SEQRES 16 A 286 ARG VAL GLU GLU ALA LEU THR GLN LEU LYS ALA GLY LYS SEQRES 17 A 286 LEU ASP ALA PHE ILE TYR ASP ALA ALA VAL LEU ASN TYR SEQRES 18 A 286 MET ALA ARG LYS ASP GLU GLY CYS LYS LEU VAL THR ILE SEQRES 19 A 286 GLY SER GLY LYS VAL PHE ALA THR THR GLY TYR GLY ILE SEQRES 20 A 286 ALA LEU HIS LYS GLY SER ARG TRP LYS ARG PRO ILE ASP SEQRES 21 A 286 LEU ALA LEU LEU GLN PHE LEU GLY ASP ASP GLU ILE GLU SEQRES 22 A 286 MET LEU GLU ARG LEU TRP LEU SER GLY ILE CYS HIS ASN HET 1N4 A 301 14 HETNAM 1N4 (2R)-AMINO(1-HYDROXY-4-PROPYL-1H-PYRAZOL-5-YL)ETHANOIC HETNAM 2 1N4 ACID FORMUL 2 1N4 C8 H13 N3 O3 FORMUL 3 HOH *181(H2 O) HELIX 1 1 GLY A 61 GLY A 75 1 15 HELIX 2 2 ASN A 97 TYR A 105 1 9 HELIX 3 3 ASN A 118 GLU A 123 1 6 HELIX 4 4 ASP A 151 ARG A 156 1 6 HELIX 5 5 PRO A 157 GLN A 160 5 4 HELIX 6 6 GLY A 172 TYR A 182 1 11 HELIX 7 7 TYR A 182 VAL A 190 1 9 HELIX 8 8 ARG A 191 ASN A 193 5 3 HELIX 9 9 ARG A 196 LYS A 205 1 10 HELIX 10 10 ALA A 216 LYS A 225 1 10 HELIX 11 11 TRP A 255 ASP A 269 1 15 HELIX 12 12 ASP A 270 SER A 281 1 12 SHEET 1 A 8 ILE A 19 PRO A 22 0 SHEET 2 A 8 ARG A 57 LYS A 60 -1 O LYS A 60 N ILE A 19 SHEET 3 A 8 VAL A 35 SER A 39 -1 N VAL A 35 O CYS A 59 SHEET 4 A 8 SER A 77 LEU A 82 1 O LEU A 82 N ARG A 38 SHEET 5 A 8 HIS A 6 THR A 11 1 N VAL A 9 O ASP A 79 SHEET 6 A 8 MET A 110 ALA A 111 1 O MET A 110 N ALA A 10 SHEET 7 A 8 ALA A 248 LEU A 249 -1 O ALA A 248 N ALA A 111 SHEET 8 A 8 ASP A 126 PHE A 127 -1 N ASP A 126 O LEU A 249 SHEET 1 B 2 LYS A 91 ILE A 92 0 SHEET 2 B 2 VAL A 95 TRP A 96 -1 O VAL A 95 N ILE A 92 SHEET 1 C 2 VAL A 132 THR A 134 0 SHEET 2 C 2 THR A 243 TYR A 245 -1 O THR A 243 N THR A 134 SHEET 1 D 4 PHE A 166 GLY A 167 0 SHEET 2 D 4 ALA A 211 ASP A 215 1 O ILE A 213 N GLY A 167 SHEET 3 D 4 ILE A 136 ALA A 141 -1 N MET A 139 O PHE A 212 SHEET 4 D 4 LEU A 231 GLY A 235 -1 O ILE A 234 N VAL A 138 SSBOND 1 CYS A 30 CYS A 58 1555 1555 2.02 SSBOND 2 CYS A 37 CYS A 59 1555 1555 2.07 SSBOND 3 CYS A 229 CYS A 284 1555 1555 2.06 CISPEP 1 ARG A 15 PRO A 16 0 3.41 SITE 1 AC1 11 HIS A 88 SER A 114 THR A 116 ARG A 121 SITE 2 AC1 11 VAL A 169 GLY A 172 SER A 173 THR A 174 SITE 3 AC1 11 TYR A 214 HOH A 457 HOH A 554 CRYST1 59.996 113.899 95.695 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016668 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008780 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010450 0.00000