HEADER RNA BINDING PROTEIN 28-MAR-13 4JXM TITLE CRYSTAL STRUCTURE OF RRP9 WD40 REPEATS COMPND MOL_ID: 1; COMPND 2 MOLECULE: U3 SMALL NUCLEOLAR RNA-INTERACTING PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: WD40 REPEATS (UNP RESIDUES 118-470); COMPND 5 SYNONYM: RRP9 HOMOLOG, U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN- COMPND 6 ASSOCIATED 55 KDA PROTEIN, U3 SNORNP-ASSOCIATED 55 KDA PROTEIN, U3- COMPND 7 55K; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RRP9, RNU3IP2, U355K; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PFBOH-MHL KEYWDS STRUCTURAL GENOMICS CONSORTIUM, SGC, RIBOSOME, RNA PROCESSING, RNA KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR X.WU,W.TEMPEL,C.XU,M.EL BAKKOURI,H.HE,A.SEITOVA,Y.LI,C.BOUNTRA, AUTHOR 2 C.H.ARROWSMITH,A.M.EDWARDS,J.MIN,STRUCTURAL GENOMICS CONSORTIUM AUTHOR 3 (SGC) REVDAT 4 20-SEP-23 4JXM 1 SEQADV REVDAT 3 15-NOV-17 4JXM 1 REMARK REVDAT 2 10-MAY-17 4JXM 1 AUTHOR JRNL REVDAT 1 17-APR-13 4JXM 0 JRNL AUTH X.WU,W.TEMPEL,C.XU,M.EL BAKKOURI,H.HE,A.SEITOVA,Y.LI, JRNL AUTH 2 C.BOUNTRA,C.H.ARROWSMITH,A.M.EDWARDS,J.MIN, JRNL AUTH 3 STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL CRYSTAL STRUCTURE OF RRP9 WD40 REPEATS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 27317 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1370 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.92 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1867 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.1940 REMARK 3 BIN FREE R VALUE SET COUNT : 100 REMARK 3 BIN FREE R VALUE : 0.2200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2501 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 182 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.34000 REMARK 3 B22 (A**2) : 0.34000 REMARK 3 B33 (A**2) : -0.68000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.138 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.130 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.091 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2631 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2486 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3592 ; 1.416 ; 1.937 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5718 ; 0.771 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 353 ; 6.940 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;31.215 ;23.056 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 429 ;12.181 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;19.586 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 408 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3024 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 630 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1344 ; 0.871 ; 0.874 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1343 ; 0.871 ; 0.873 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1683 ; 1.419 ; 1.305 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 130 A 465 REMARK 3 ORIGIN FOR THE GROUP (A): 17.8809 3.5476 28.4352 REMARK 3 T TENSOR REMARK 3 T11: 0.0188 T22: 0.0077 REMARK 3 T33: 0.0301 T12: -0.0017 REMARK 3 T13: -0.0043 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 1.2165 L22: 1.1650 REMARK 3 L33: 2.4099 L12: -0.1052 REMARK 3 L13: 0.3818 L23: 0.5453 REMARK 3 S TENSOR REMARK 3 S11: 0.0682 S12: -0.0070 S13: -0.0562 REMARK 3 S21: -0.0260 S22: -0.0262 S23: -0.0213 REMARK 3 S31: 0.1658 S32: 0.0129 S33: -0.0420 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : WITH TLS ADDED. REMARK 3 ARP/WARP WAS USED IN ATOM UPDATE AND AUTO BUILD MODES. REMARK 3 COOT AND THE MOLPROBITY SERVER WERE ALSO USED DURING REFINEMENT. REMARK 4 REMARK 4 4JXM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000078632. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97923 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK HIGH-RESOLUTION REMARK 200 DOUBLE-CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27436 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 15.40 REMARK 200 R MERGE (I) : 0.18400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.20 REMARK 200 R MERGE FOR SHELL (I) : 0.90600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3PSL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, 0.2 M AMMONIUM ACETATE, REMARK 280 0.1 M HEPES SODIUM, PH 7.5, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.80050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 31.87300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 31.87300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 125.70075 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 31.87300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 31.87300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 41.90025 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 31.87300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.87300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 125.70075 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 31.87300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.87300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 41.90025 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 83.80050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 100 REMARK 465 HIS A 101 REMARK 465 HIS A 102 REMARK 465 HIS A 103 REMARK 465 HIS A 104 REMARK 465 HIS A 105 REMARK 465 HIS A 106 REMARK 465 SER A 107 REMARK 465 SER A 108 REMARK 465 GLY A 109 REMARK 465 ARG A 110 REMARK 465 GLU A 111 REMARK 465 ASN A 112 REMARK 465 LEU A 113 REMARK 465 TYR A 114 REMARK 465 PHE A 115 REMARK 465 GLN A 116 REMARK 465 GLY A 117 REMARK 465 GLU A 118 REMARK 465 GLN A 119 REMARK 465 ARG A 120 REMARK 465 GLY A 121 REMARK 465 ARG A 122 REMARK 465 LEU A 123 REMARK 465 GLN A 124 REMARK 465 LYS A 125 REMARK 465 LEU A 126 REMARK 465 VAL A 127 REMARK 465 ALA A 128 REMARK 465 LYS A 129 REMARK 465 LYS A 188 REMARK 465 LYS A 189 REMARK 465 GLY A 190 REMARK 465 ALA A 191 REMARK 465 GLU A 192 REMARK 465 GLY A 193 REMARK 465 ARG A 466 REMARK 465 VAL A 467 REMARK 465 PRO A 468 REMARK 465 VAL A 469 REMARK 465 PRO A 470 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 130 CG CD OE1 OE2 REMARK 470 ARG A 186 CZ NH1 NH2 REMARK 470 LYS A 194 CG CD CE NZ REMARK 470 GLN A 229 CD OE1 NE2 REMARK 470 GLU A 272 CD OE1 OE2 REMARK 470 ARG A 303 CD NE CZ NH1 NH2 REMARK 470 LYS A 311 CD CE NZ REMARK 470 GLU A 336 CD OE1 OE2 REMARK 470 ARG A 368 CD NE CZ NH1 NH2 REMARK 470 GLU A 370 CG CD OE1 OE2 REMARK 470 ARG A 451 NH1 NH2 REMARK 470 LYS A 453 CG CD CE NZ REMARK 470 ARG A 465 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 324 UNK UNX A 506 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 221 15.35 80.59 REMARK 500 LEU A 292 -126.78 -123.85 REMARK 500 GLN A 324 34.72 -144.56 REMARK 500 SER A 395 -138.57 -143.51 REMARK 500 SER A 398 7.61 91.24 REMARK 500 SER A 398 11.42 88.58 REMARK 500 LEU A 420 108.25 -161.11 REMARK 500 REMARK 500 REMARK: NULL DBREF 4JXM A 118 470 UNP O43818 U3IP2_HUMAN 118 470 SEQADV 4JXM MET A 100 UNP O43818 EXPRESSION TAG SEQADV 4JXM HIS A 101 UNP O43818 EXPRESSION TAG SEQADV 4JXM HIS A 102 UNP O43818 EXPRESSION TAG SEQADV 4JXM HIS A 103 UNP O43818 EXPRESSION TAG SEQADV 4JXM HIS A 104 UNP O43818 EXPRESSION TAG SEQADV 4JXM HIS A 105 UNP O43818 EXPRESSION TAG SEQADV 4JXM HIS A 106 UNP O43818 EXPRESSION TAG SEQADV 4JXM SER A 107 UNP O43818 EXPRESSION TAG SEQADV 4JXM SER A 108 UNP O43818 EXPRESSION TAG SEQADV 4JXM GLY A 109 UNP O43818 EXPRESSION TAG SEQADV 4JXM ARG A 110 UNP O43818 EXPRESSION TAG SEQADV 4JXM GLU A 111 UNP O43818 EXPRESSION TAG SEQADV 4JXM ASN A 112 UNP O43818 EXPRESSION TAG SEQADV 4JXM LEU A 113 UNP O43818 EXPRESSION TAG SEQADV 4JXM TYR A 114 UNP O43818 EXPRESSION TAG SEQADV 4JXM PHE A 115 UNP O43818 EXPRESSION TAG SEQADV 4JXM GLN A 116 UNP O43818 EXPRESSION TAG SEQADV 4JXM GLY A 117 UNP O43818 EXPRESSION TAG SEQRES 1 A 371 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 371 LEU TYR PHE GLN GLY GLU GLN ARG GLY ARG LEU GLN LYS SEQRES 3 A 371 LEU VAL ALA LYS GLU ILE GLN ALA PRO ALA SER ALA ASP SEQRES 4 A 371 ILE ARG VAL LEU ARG GLY HIS GLN LEU SER ILE THR CYS SEQRES 5 A 371 LEU VAL VAL THR PRO ASP ASP SER ALA ILE PHE SER ALA SEQRES 6 A 371 ALA LYS ASP CYS SER ILE ILE LYS TRP SER VAL GLU SER SEQRES 7 A 371 GLY ARG LYS LEU HIS VAL ILE PRO ARG ALA LYS LYS GLY SEQRES 8 A 371 ALA GLU GLY LYS PRO PRO GLY HIS SER SER HIS VAL LEU SEQRES 9 A 371 CYS MET ALA ILE SER SER ASP GLY LYS TYR LEU ALA SER SEQRES 10 A 371 GLY ASP ARG SER LYS LEU ILE LEU ILE TRP GLU ALA GLN SEQRES 11 A 371 SER CYS GLN HIS LEU TYR THR PHE THR GLY HIS ARG ASP SEQRES 12 A 371 ALA VAL SER GLY LEU ALA PHE ARG ARG GLY THR HIS GLN SEQRES 13 A 371 LEU TYR SER THR SER HIS ASP ARG SER VAL LYS VAL TRP SEQRES 14 A 371 ASN VAL ALA GLU ASN SER TYR VAL GLU THR LEU PHE GLY SEQRES 15 A 371 HIS GLN ASP ALA VAL ALA ALA LEU ASP ALA LEU SER ARG SEQRES 16 A 371 GLU CYS CYS VAL THR ALA GLY GLY ARG ASP GLY THR VAL SEQRES 17 A 371 ARG VAL TRP LYS ILE PRO GLU GLU SER GLN LEU VAL PHE SEQRES 18 A 371 TYR GLY HIS GLN GLY SER ILE ASP CYS ILE HIS LEU ILE SEQRES 19 A 371 ASN GLU GLU HIS MET VAL SER GLY ALA ASP ASP GLY SER SEQRES 20 A 371 VAL ALA LEU TRP GLY LEU SER LYS LYS ARG PRO LEU ALA SEQRES 21 A 371 LEU GLN ARG GLU ALA HIS GLY LEU ARG GLY GLU PRO GLY SEQRES 22 A 371 LEU GLU GLN PRO PHE TRP ILE SER SER VAL ALA ALA LEU SEQRES 23 A 371 LEU ASN THR ASP LEU VAL ALA THR GLY SER HIS SER SER SEQRES 24 A 371 CYS VAL ARG LEU TRP GLN CYS GLY GLU GLY PHE ARG GLN SEQRES 25 A 371 LEU ASP LEU LEU CYS ASP ILE PRO LEU VAL GLY PHE ILE SEQRES 26 A 371 ASN SER LEU LYS PHE SER SER SER GLY ASP PHE LEU VAL SEQRES 27 A 371 ALA GLY VAL GLY GLN GLU HIS ARG LEU GLY ARG TRP TRP SEQRES 28 A 371 ARG ILE LYS GLU ALA ARG ASN SER VAL CYS ILE ILE PRO SEQRES 29 A 371 LEU ARG ARG VAL PRO VAL PRO HET UNX A 501 1 HET UNX A 502 1 HET UNX A 503 1 HET UNX A 504 1 HET UNX A 505 1 HET UNX A 506 1 HET UNX A 507 1 HET UNX A 508 1 HET UNX A 509 1 HETNAM UNX UNKNOWN ATOM OR ION FORMUL 2 UNX 9(X) FORMUL 11 HOH *182(H2 O) HELIX 1 1 ALA A 271 ASN A 273 5 3 HELIX 2 2 GLY A 302 ASP A 304 5 3 HELIX 3 3 GLU A 407 ARG A 410 5 4 SHEET 1 A 4 ARG A 140 ARG A 143 0 SHEET 2 A 4 SER A 458 PRO A 463 -1 O VAL A 459 N LEU A 142 SHEET 3 A 4 PHE A 435 GLY A 441 -1 N LEU A 436 O ILE A 462 SHEET 4 A 4 PHE A 423 PHE A 429 -1 N LYS A 428 O VAL A 437 SHEET 1 B 4 ILE A 149 VAL A 154 0 SHEET 2 B 4 ALA A 160 ALA A 165 -1 O ALA A 164 N THR A 150 SHEET 3 B 4 ILE A 170 SER A 174 -1 O TRP A 173 N ILE A 161 SHEET 4 B 4 LYS A 180 ILE A 184 -1 O ILE A 184 N ILE A 170 SHEET 1 C 4 VAL A 202 ILE A 207 0 SHEET 2 C 4 TYR A 213 ASP A 218 -1 O GLY A 217 N LEU A 203 SHEET 3 C 4 ILE A 223 GLU A 227 -1 O LEU A 224 N SER A 216 SHEET 4 C 4 HIS A 233 PHE A 237 -1 O LEU A 234 N ILE A 225 SHEET 1 D 4 VAL A 244 PHE A 249 0 SHEET 2 D 4 GLN A 255 SER A 260 -1 O TYR A 257 N ALA A 248 SHEET 3 D 4 SER A 264 ASN A 269 -1 O LYS A 266 N SER A 258 SHEET 4 D 4 SER A 274 PHE A 280 -1 O LEU A 279 N VAL A 265 SHEET 1 E 4 ALA A 288 ALA A 291 0 SHEET 2 E 4 CYS A 296 ALA A 300 -1 O VAL A 298 N ASP A 290 SHEET 3 E 4 THR A 306 LYS A 311 -1 O TRP A 310 N CYS A 297 SHEET 4 E 4 SER A 316 TYR A 321 -1 O PHE A 320 N VAL A 307 SHEET 1 F 4 ILE A 327 ASN A 334 0 SHEET 2 F 4 HIS A 337 ALA A 342 -1 O HIS A 337 N ILE A 333 SHEET 3 F 4 VAL A 347 GLY A 351 -1 O TRP A 350 N MET A 338 SHEET 4 F 4 ALA A 359 GLN A 361 -1 O GLN A 361 N VAL A 347 SHEET 1 G 2 LEU A 367 ARG A 368 0 SHEET 2 G 2 GLN A 375 PRO A 376 -1 O GLN A 375 N ARG A 368 SHEET 1 H 4 SER A 381 ALA A 384 0 SHEET 2 H 4 LEU A 390 GLY A 394 -1 O ALA A 392 N ALA A 383 SHEET 3 H 4 CYS A 399 CYS A 405 -1 O TRP A 403 N VAL A 391 SHEET 4 H 4 LEU A 412 PRO A 419 -1 O LEU A 415 N LEU A 402 CRYST1 63.746 63.746 167.601 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015687 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015687 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005967 0.00000