HEADER IMMUNE SYSTEM 29-MAR-13 4JY4 TITLE CRYSTAL STRUCTURE OF HUMAN FAB PGT121, A BROADLY REACTIVE AND POTENT TITLE 2 HIV-1 NEUTRALIZING ANTIBODY COMPND MOL_ID: 1; COMPND 2 MOLECULE: PGT121 HEAVY CHAIN; COMPND 3 CHAIN: B; COMPND 4 FRAGMENT: FAB; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PGT121 LIGHT CHAIN; COMPND 8 CHAIN: A; COMPND 9 FRAGMENT: FAB; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK 293F; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: HEK 293F KEYWDS BROADLY NEUTRALIZING ANTIBODY AGAINST HIV-1, HIV-1 ENV GP120 SUBUNIT, KEYWDS 2 IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.-P.JULIEN,D.C.DIWANJI,D.R.BURTON,I.A.WILSON REVDAT 4 20-SEP-23 4JY4 1 HETSYN REVDAT 3 29-JUL-20 4JY4 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 05-FEB-14 4JY4 1 JRNL REVDAT 1 15-MAY-13 4JY4 0 JRNL AUTH J.P.JULIEN,D.SOK,R.KHAYAT,J.H.LEE,K.J.DOORES,L.M.WALKER, JRNL AUTH 2 A.RAMOS,D.C.DIWANJI,R.PEJCHAL,A.CUPO,U.KATPALLY, JRNL AUTH 3 R.S.DEPETRIS,R.L.STANFIELD,R.MCBRIDE,A.J.MAROZSAN, JRNL AUTH 4 J.C.PAULSON,R.W.SANDERS,J.P.MOORE,D.R.BURTON,P.POIGNARD, JRNL AUTH 5 A.B.WARD,I.A.WILSON JRNL TITL BROADLY NEUTRALIZING ANTIBODY PGT121 ALLOSTERICALLY JRNL TITL 2 MODULATES CD4 BINDING VIA RECOGNITION OF THE HIV-1 GP120 V3 JRNL TITL 3 BASE AND MULTIPLE SURROUNDING GLYCANS. JRNL REF PLOS PATHOG. V. 9 03342 2013 JRNL REFN ISSN 1553-7366 JRNL PMID 23658524 JRNL DOI 10.1371/JOURNAL.PPAT.1003342 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.2_869) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 17353 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 870 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9151 - 5.0646 1.00 2894 141 0.1754 0.2030 REMARK 3 2 5.0646 - 4.0308 1.00 2760 155 0.1497 0.1910 REMARK 3 3 4.0308 - 3.5245 1.00 2748 139 0.1960 0.2405 REMARK 3 4 3.5245 - 3.2037 1.00 2726 136 0.2011 0.2895 REMARK 3 5 3.2037 - 2.9749 1.00 2674 151 0.2341 0.2665 REMARK 3 6 2.9749 - 2.8000 1.00 2681 148 0.2727 0.3495 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.73 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 20.37 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.760 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.35250 REMARK 3 B22 (A**2) : 10.19450 REMARK 3 B33 (A**2) : -6.84200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3550 REMARK 3 ANGLE : 1.443 4851 REMARK 3 CHIRALITY : 0.201 571 REMARK 3 PLANARITY : 0.006 597 REMARK 3 DIHEDRAL : 23.928 1299 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 9:26) REMARK 3 ORIGIN FOR THE GROUP (A): 22.4673 27.0570 30.9696 REMARK 3 T TENSOR REMARK 3 T11: 0.5174 T22: 0.6081 REMARK 3 T33: 0.5925 T12: 0.0849 REMARK 3 T13: -0.0175 T23: 0.0225 REMARK 3 L TENSOR REMARK 3 L11: -0.0718 L22: -0.0405 REMARK 3 L33: 0.3322 L12: -0.1952 REMARK 3 L13: 0.2492 L23: -0.1111 REMARK 3 S TENSOR REMARK 3 S11: 0.0625 S12: 0.2470 S13: 0.1505 REMARK 3 S21: -0.3364 S22: -0.0347 S23: -0.0090 REMARK 3 S31: -0.1235 S32: 0.5454 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 27:92) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9122 24.9088 39.5005 REMARK 3 T TENSOR REMARK 3 T11: 0.4520 T22: 0.3284 REMARK 3 T33: 0.3387 T12: 0.0682 REMARK 3 T13: -0.1287 T23: -0.0291 REMARK 3 L TENSOR REMARK 3 L11: 1.1238 L22: 0.4456 REMARK 3 L33: 1.1404 L12: -0.3258 REMARK 3 L13: -1.2313 L23: -0.4499 REMARK 3 S TENSOR REMARK 3 S11: -0.0405 S12: 0.2010 S13: 0.0648 REMARK 3 S21: 0.2834 S22: 0.0028 S23: -0.0902 REMARK 3 S31: 0.1903 S32: 0.2317 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 93:119) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6153 25.7388 24.1858 REMARK 3 T TENSOR REMARK 3 T11: 0.2262 T22: 0.3347 REMARK 3 T33: 0.2518 T12: -0.0051 REMARK 3 T13: -0.0239 T23: -0.0463 REMARK 3 L TENSOR REMARK 3 L11: -0.0196 L22: 0.2942 REMARK 3 L33: -0.0375 L12: 0.0703 REMARK 3 L13: 0.1465 L23: -0.2105 REMARK 3 S TENSOR REMARK 3 S11: -0.0030 S12: 0.0345 S13: 0.0658 REMARK 3 S21: 0.0511 S22: 0.2133 S23: -0.1883 REMARK 3 S31: -0.1186 S32: 0.4437 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 120:151) REMARK 3 ORIGIN FOR THE GROUP (A): 6.5299 22.5636 1.1652 REMARK 3 T TENSOR REMARK 3 T11: 0.1795 T22: 0.2647 REMARK 3 T33: 0.2861 T12: -0.0028 REMARK 3 T13: -0.0069 T23: -0.0185 REMARK 3 L TENSOR REMARK 3 L11: 0.3328 L22: -0.1790 REMARK 3 L33: 0.3426 L12: -0.5244 REMARK 3 L13: -0.1608 L23: -0.0969 REMARK 3 S TENSOR REMARK 3 S11: -0.0397 S12: -0.1547 S13: -0.0589 REMARK 3 S21: -0.1499 S22: 0.1434 S23: 0.0195 REMARK 3 S31: -0.0849 S32: -0.0342 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 152:188) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9307 24.9027 3.9451 REMARK 3 T TENSOR REMARK 3 T11: 0.2766 T22: 0.4158 REMARK 3 T33: 0.3833 T12: 0.0688 REMARK 3 T13: -0.0555 T23: -0.0585 REMARK 3 L TENSOR REMARK 3 L11: 1.1643 L22: 0.3705 REMARK 3 L33: 0.5874 L12: 1.2517 REMARK 3 L13: 0.1025 L23: 0.5336 REMARK 3 S TENSOR REMARK 3 S11: -0.0913 S12: -0.2313 S13: 0.2600 REMARK 3 S21: 0.0842 S22: -0.0927 S23: 0.0415 REMARK 3 S31: -0.1054 S32: 0.0493 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 189:211) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0102 26.4714 -2.3132 REMARK 3 T TENSOR REMARK 3 T11: 0.2735 T22: 0.4128 REMARK 3 T33: 0.3868 T12: -0.0305 REMARK 3 T13: 0.0062 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.0780 L22: -0.0605 REMARK 3 L33: 0.1292 L12: 0.0274 REMARK 3 L13: -0.0820 L23: -0.2286 REMARK 3 S TENSOR REMARK 3 S11: -0.0209 S12: 0.2004 S13: 0.3137 REMARK 3 S21: 0.2143 S22: 0.0252 S23: 0.0432 REMARK 3 S31: 0.0334 S32: 0.0339 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 1:39) REMARK 3 ORIGIN FOR THE GROUP (A): -7.1076 19.7711 36.2569 REMARK 3 T TENSOR REMARK 3 T11: 0.4368 T22: 0.2259 REMARK 3 T33: 0.3137 T12: -0.0097 REMARK 3 T13: 0.0362 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 0.7828 L22: 0.6269 REMARK 3 L33: 0.7377 L12: -0.0643 REMARK 3 L13: -0.2948 L23: 0.4861 REMARK 3 S TENSOR REMARK 3 S11: 0.0649 S12: 0.2056 S13: 0.0178 REMARK 3 S21: 0.2443 S22: -0.0503 S23: 0.2614 REMARK 3 S31: 0.2155 S32: 0.0199 S33: -0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 40:51) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0606 29.2974 34.2099 REMARK 3 T TENSOR REMARK 3 T11: 0.5263 T22: 0.2660 REMARK 3 T33: 0.3384 T12: -0.1467 REMARK 3 T13: 0.0117 T23: 0.0749 REMARK 3 L TENSOR REMARK 3 L11: 0.0566 L22: 0.2378 REMARK 3 L33: 0.0443 L12: 0.1448 REMARK 3 L13: 0.0502 L23: 0.2359 REMARK 3 S TENSOR REMARK 3 S11: -0.9796 S12: -0.1347 S13: 0.7467 REMARK 3 S21: -0.2520 S22: 0.8183 S23: -0.1325 REMARK 3 S31: -0.0153 S32: 0.0657 S33: 0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 52:101) REMARK 3 ORIGIN FOR THE GROUP (A): -2.3259 28.2502 43.3963 REMARK 3 T TENSOR REMARK 3 T11: 0.4623 T22: 0.1689 REMARK 3 T33: 0.2819 T12: 0.0094 REMARK 3 T13: 0.0025 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 1.1311 L22: 0.3916 REMARK 3 L33: 0.8409 L12: 0.1851 REMARK 3 L13: -0.4170 L23: 0.2887 REMARK 3 S TENSOR REMARK 3 S11: 0.0125 S12: -0.0468 S13: -0.0169 REMARK 3 S21: 0.2946 S22: -0.0442 S23: 0.1671 REMARK 3 S31: 0.1037 S32: -0.1522 S33: -0.0000 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 102:117) REMARK 3 ORIGIN FOR THE GROUP (A): -8.5714 20.9467 18.9714 REMARK 3 T TENSOR REMARK 3 T11: 0.3965 T22: 0.3331 REMARK 3 T33: 0.3920 T12: 0.0202 REMARK 3 T13: -0.1046 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 0.2877 L22: 0.2422 REMARK 3 L33: 0.1148 L12: 0.3872 REMARK 3 L13: -0.1966 L23: 0.0710 REMARK 3 S TENSOR REMARK 3 S11: -0.0761 S12: 0.2872 S13: -0.1035 REMARK 3 S21: 0.0792 S22: -0.1493 S23: 0.2209 REMARK 3 S31: 0.0406 S32: 0.0119 S33: -0.0000 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 118:201) REMARK 3 ORIGIN FOR THE GROUP (A): 1.3549 11.0943 2.1968 REMARK 3 T TENSOR REMARK 3 T11: 0.2394 T22: 0.3916 REMARK 3 T33: 0.3273 T12: 0.0274 REMARK 3 T13: 0.0288 T23: 0.0310 REMARK 3 L TENSOR REMARK 3 L11: 1.8860 L22: 0.4958 REMARK 3 L33: 0.4416 L12: 0.5735 REMARK 3 L13: 0.3222 L23: 0.2201 REMARK 3 S TENSOR REMARK 3 S11: -0.0996 S12: -0.1509 S13: -0.1484 REMARK 3 S21: 0.0049 S22: 0.0724 S23: -0.1767 REMARK 3 S31: 0.0004 S32: 0.0162 S33: -0.0000 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 202:211) REMARK 3 ORIGIN FOR THE GROUP (A): -6.2000 8.2031 -2.6826 REMARK 3 T TENSOR REMARK 3 T11: 0.2412 T22: 0.5165 REMARK 3 T33: 0.4466 T12: -0.0262 REMARK 3 T13: -0.0281 T23: -0.0449 REMARK 3 L TENSOR REMARK 3 L11: 0.1046 L22: 0.5609 REMARK 3 L33: 0.0590 L12: 0.0635 REMARK 3 L13: 0.1066 L23: 0.0326 REMARK 3 S TENSOR REMARK 3 S11: 0.0313 S12: 0.4560 S13: -0.6904 REMARK 3 S21: 0.0358 S22: -0.1564 S23: 0.0176 REMARK 3 S31: 0.0845 S32: -0.5245 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JY4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000078650. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SIDE SCATTERING BENT CUBE-ROOT I REMARK 200 -BEAM SINGLE CRYSTAL, ASYMMETRIC REMARK 200 CUT 4.965 DEGREES REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17409 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08800 REMARK 200 FOR THE DATA SET : 19.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.48400 REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4JY6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, PH 7.5, 30% V/V PEG400, REMARK 280 5% W/V PEG3000, 10% V/V GLYCEROL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.48500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.60500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.86000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 79.60500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.48500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.86000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS B 212 REMARK 465 SER B 213 REMARK 465 CYS B 214 REMARK 465 SER A 8 REMARK 465 CYS A 212 REMARK 465 SER A 213 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O6 GAL C 6 O6 SIA C 7 2.02 REMARK 500 ND2 ASN B 103 C2 NAG C 1 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 124 C - N - CA ANGL. DEV. = 9.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 15 -19.02 84.56 REMARK 500 PHE B 100G 12.11 -69.64 REMARK 500 PRO B 124 136.02 -37.71 REMARK 500 PHE B 144 140.11 -172.55 REMARK 500 LEU A 28 -65.96 -103.88 REMARK 500 ASN A 51 -50.55 67.56 REMARK 500 LEU A 107 74.85 -68.93 REMARK 500 ASP A 152 -109.52 48.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JY5 RELATED DB: PDB REMARK 900 RELATED ID: 4JY6 RELATED DB: PDB DBREF 4JY4 A 8 213 PDB 4JY4 4JY4 8 213 DBREF 4JY4 B 1 214 PDB 4JY4 4JY4 1 214 SEQRES 1 B 235 GLN MET GLN LEU GLN GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 B 235 PRO SER GLU THR LEU SER LEU THR CYS SER VAL SER GLY SEQRES 3 B 235 ALA SER ILE SER ASP SER TYR TRP SER TRP ILE ARG ARG SEQRES 4 B 235 SER PRO GLY LYS GLY LEU GLU TRP ILE GLY TYR VAL HIS SEQRES 5 B 235 LYS SER GLY ASP THR ASN TYR SER PRO SER LEU LYS SER SEQRES 6 B 235 ARG VAL ASN LEU SER LEU ASP THR SER LYS ASN GLN VAL SEQRES 7 B 235 SER LEU SER LEU VAL ALA ALA THR ALA ALA ASP SER GLY SEQRES 8 B 235 LYS TYR TYR CYS ALA ARG THR LEU HIS GLY ARG ARG ILE SEQRES 9 B 235 TYR GLY ILE VAL ALA PHE ASN GLU TRP PHE THR TYR PHE SEQRES 10 B 235 TYR MET ASP VAL TRP GLY ASN GLY THR GLN VAL THR VAL SEQRES 11 B 235 SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 12 B 235 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 13 B 235 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 14 B 235 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 15 B 235 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 16 B 235 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 17 B 235 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 18 B 235 SER ASN THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SER SEQRES 19 B 235 CYS SEQRES 1 A 211 SER ASP ILE SER VAL ALA PRO GLY GLU THR ALA ARG ILE SEQRES 2 A 211 SER CYS GLY GLU LYS SER LEU GLY SER ARG ALA VAL GLN SEQRES 3 A 211 TRP TYR GLN HIS ARG ALA GLY GLN ALA PRO SER LEU ILE SEQRES 4 A 211 ILE TYR ASN ASN GLN ASP ARG PRO SER GLY ILE PRO GLU SEQRES 5 A 211 ARG PHE SER GLY SER PRO ASP SER PRO PHE GLY THR THR SEQRES 6 A 211 ALA THR LEU THR ILE THR SER VAL GLU ALA GLY ASP GLU SEQRES 7 A 211 ALA ASP TYR TYR CYS HIS ILE TRP ASP SER ARG VAL PRO SEQRES 8 A 211 THR LYS TRP VAL PHE GLY GLY GLY THR THR LEU THR VAL SEQRES 9 A 211 LEU GLY GLN PRO LYS ALA ALA PRO SER VAL THR LEU PHE SEQRES 10 A 211 PRO PRO SER SER GLU GLU LEU GLN ALA ASN LYS ALA THR SEQRES 11 A 211 LEU VAL CYS LEU ILE SER ASP PHE TYR PRO GLY ALA VAL SEQRES 12 A 211 THR VAL ALA TRP LYS ALA ASP SER SER PRO VAL LYS ALA SEQRES 13 A 211 GLY VAL GLU THR THR THR PRO SER LYS GLN SER ASN ASN SEQRES 14 A 211 LYS TYR ALA ALA SER SER TYR LEU SER LEU THR PRO GLU SEQRES 15 A 211 GLN TRP LYS SER HIS LYS SER TYR SER CYS GLN VAL THR SEQRES 16 A 211 HIS GLU GLY SER THR VAL GLU LYS THR VAL ALA PRO THR SEQRES 17 A 211 GLU CYS SER MODRES 4JY4 ASN B 103 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET NAG C 5 14 HET GAL C 6 11 HET SIA C 7 20 HET MAN C 8 11 HET FUC C 9 10 HET GOL B 301 6 HET GOL A 301 6 HET GOL A 302 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM SIA N-ACETYL-ALPHA-NEURAMINIC ACID HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN SIA N-ACETYLNEURAMINIC ACID; SIALIC ACID; ALPHA-SIALIC HETSYN 2 SIA ACID; O-SIALIC ACID HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 3(C8 H15 N O6) FORMUL 3 BMA C6 H12 O6 FORMUL 3 MAN 2(C6 H12 O6) FORMUL 3 GAL C6 H12 O6 FORMUL 3 SIA C11 H19 N O9 FORMUL 3 FUC C6 H12 O5 FORMUL 4 GOL 3(C3 H8 O3) FORMUL 7 HOH *13(H2 O) HELIX 1 4 SER B 28 SER B 32 5 5 HELIX 2 5 SER B 60 SER B 65 1 6 HELIX 3 6 THR B 83 SER B 87 5 5 HELIX 4 7 ILE B 100D ASN B 100H 5 5 HELIX 5 8 SER B 154 ALA B 156 5 3 HELIX 6 9 SER B 185 GLY B 188 5 4 HELIX 7 10 LYS B 199 ASN B 202 5 4 HELIX 8 1 GLU A 79 GLU A 83 5 5 HELIX 9 2 SER A 122 ALA A 128 1 7 HELIX 10 3 THR A 182 HIS A 189 1 8 SHEET 1 A 5 ILE A 11 VAL A 13 0 SHEET 2 A 5 GLY A 99 VAL A 106 1 O THR A 105 N ILE A 11 SHEET 3 A 5 ALA A 84 ASP A 92 -1 N TYR A 86 O GLY A 101 SHEET 4 A 5 ARG A 31 HIS A 38 -1 N HIS A 38 O ASP A 85 SHEET 5 A 5 SER A 45 ILE A 48 -1 O ILE A 48 N TRP A 35 SHEET 1 B 3 ALA A 19 LYS A 26 0 SHEET 2 B 3 THR A 70 ILE A 75 -1 O ILE A 75 N ALA A 19 SHEET 3 B 3 PHE A 62 SER A 63 -1 N SER A 63 O THR A 74 SHEET 1 C 4 SER A 115 PHE A 119 0 SHEET 2 C 4 ALA A 131 PHE A 140 -1 O LEU A 136 N THR A 117 SHEET 3 C 4 TYR A 173 LEU A 181 -1 O SER A 177 N CYS A 135 SHEET 4 C 4 VAL A 160 THR A 162 -1 N GLU A 161 O TYR A 178 SHEET 1 D 4 SER A 115 PHE A 119 0 SHEET 2 D 4 ALA A 131 PHE A 140 -1 O LEU A 136 N THR A 117 SHEET 3 D 4 TYR A 173 LEU A 181 -1 O SER A 177 N CYS A 135 SHEET 4 D 4 SER A 166 LYS A 167 -1 N SER A 166 O ALA A 174 SHEET 1 E 4 SER A 154 PRO A 155 0 SHEET 2 E 4 THR A 146 ALA A 151 -1 N ALA A 151 O SER A 154 SHEET 3 E 4 TYR A 192 HIS A 198 -1 O THR A 197 N THR A 146 SHEET 4 E 4 SER A 201 VAL A 207 -1 O VAL A 203 N VAL A 196 SHEET 1 F 4 GLN B 3 SER B 7 0 SHEET 2 F 4 LEU B 18 SER B 25 -1 O THR B 21 N SER B 7 SHEET 3 F 4 GLN B 77 LEU B 82 -1 O VAL B 78 N CYS B 22 SHEET 4 F 4 VAL B 67 ASP B 72 -1 N ASP B 72 O GLN B 77 SHEET 1 G 6 LEU B 11 VAL B 12 0 SHEET 2 G 6 THR B 105 VAL B 109 1 O THR B 108 N VAL B 12 SHEET 3 G 6 GLY B 88 ILE B 100A-1 N GLY B 88 O VAL B 107 SHEET 4 G 6 TYR B 33 ARG B 39 -1 N ILE B 37 O TYR B 91 SHEET 5 G 6 LEU B 45 VAL B 51 -1 O GLU B 46 N ARG B 38 SHEET 6 G 6 ASN B 58 TYR B 59 -1 O ASN B 58 N TYR B 50 SHEET 1 H 4 LEU B 11 VAL B 12 0 SHEET 2 H 4 THR B 105 VAL B 109 1 O THR B 108 N VAL B 12 SHEET 3 H 4 GLY B 88 ILE B 100A-1 N GLY B 88 O VAL B 107 SHEET 4 H 4 TRP B 100J TRP B 101 -1 O TYR B 100O N LEU B 96 SHEET 1 I 4 SER B 118 SER B 125 0 SHEET 2 I 4 THR B 133 TYR B 143 -1 O GLY B 137 N LEU B 122 SHEET 3 I 4 TYR B 174 PRO B 183 -1 O LEU B 176 N VAL B 140 SHEET 4 I 4 VAL B 161 THR B 163 -1 N HIS B 162 O VAL B 179 SHEET 1 J 4 SER B 118 SER B 125 0 SHEET 2 J 4 THR B 133 TYR B 143 -1 O GLY B 137 N LEU B 122 SHEET 3 J 4 TYR B 174 PRO B 183 -1 O LEU B 176 N VAL B 140 SHEET 4 J 4 VAL B 167 LEU B 168 -1 N VAL B 167 O SER B 175 SHEET 1 K 3 THR B 149 TRP B 152 0 SHEET 2 K 3 ILE B 193 HIS B 198 -1 O ASN B 197 N THR B 149 SHEET 3 K 3 THR B 203 ARG B 208 -1 O THR B 203 N HIS B 198 SSBOND 1 CYS B 22 CYS B 92 1555 1555 2.06 SSBOND 2 CYS B 138 CYS B 194 1555 1555 2.02 SSBOND 3 CYS A 23 CYS A 88 1555 1555 2.04 SSBOND 4 CYS A 135 CYS A 194 1555 1555 2.02 LINK ND2 ASN B 103 C1 NAG C 1 1555 1555 1.43 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O6 NAG C 1 C1 FUC C 9 1555 1555 1.44 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.43 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.43 LINK O6 BMA C 3 C1 MAN C 8 1555 1555 1.45 LINK O2 MAN C 4 C1 NAG C 5 1555 1555 1.42 LINK O4 NAG C 5 C1 GAL C 6 1555 1555 1.42 LINK O6 GAL C 6 C2 SIA C 7 1555 1555 1.46 CISPEP 1 PHE B 144 PRO B 145 0 -4.56 CISPEP 2 GLU B 146 PRO B 147 0 2.85 CISPEP 3 SER A 67A PRO A 67B 0 -0.85 CISPEP 4 TYR A 141 PRO A 142 0 1.84 CRYST1 64.970 65.720 159.210 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015392 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015216 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006281 0.00000