data_4K25 # _entry.id 4K25 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4K25 RCSB RCSB078795 WWPDB D_1000078795 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4K25 _pdbx_database_status.recvd_initial_deposition_date 2013-04-08 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Neculai, D.' 1 'Wan, L.' 2 'Mao, D.Y.' 3 'Sicheri, F.' 4 # _citation.id primary _citation.title 'Reconstitution and characterization of eukaryotic N6-threonylcarbamoylation of tRNA using a minimal enzyme system.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 41 _citation.page_first 6332 _citation.page_last 6346 _citation.year 2013 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23620299 _citation.pdbx_database_id_DOI 10.1093/nar/gkt322 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Wan, L.C.' 1 primary 'Mao, D.Y.' 2 primary 'Neculai, D.' 3 primary 'Strecker, J.' 4 primary 'Chiovitti, D.' 5 primary 'Kurinov, I.' 6 primary 'Poda, G.' 7 primary 'Thevakumaran, N.' 8 primary 'Yuan, F.' 9 primary 'Szilard, R.K.' 10 primary 'Lissina, E.' 11 primary 'Nislow, C.' 12 primary 'Caudy, A.A.' 13 primary 'Durocher, D.' 14 primary 'Sicheri, F.' 15 # _cell.entry_id 4K25 _cell.length_a 64.597 _cell.length_b 130.983 _cell.length_c 47.866 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4K25 _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Probable tRNA threonylcarbamoyladenosine biosynthesis protein QRI7, mitochondrial' 42989.711 1 ? ? ? ? 2 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 3 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 't(6)A37 threonylcarbamoyladenosine biosynthesis protein QRI7' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GA(MSE)DPRKGYKVLAIETSCDDTCVSVLDRFSKSAAPNVLANLKDTLDSIDEGGIIPTKAHIHHQARIGPLTERALIE SNAREGIDLICVTRGPG(MSE)PGSLSGGLDFAKGLAVAWNKPLIGVHH(MSE)LGHLLIPR(MSE)GTNGKVPQFPFVS LLVSGGHTTFVLSRAIDDHEILCDTIDIAVGDSLDKCGRELGFKGT(MSE)IARE(MSE)EKFINQDINDQDFALKLE (MSE)PSPLKNSASKRN(MSE)LSFSFSAFITALRTNLTKLGKTEIQELPEREIRSIAYQVQESVFDHIINKLKHVLKSQ PEKFKNVREFVCSGGVSSNQRLRTKLETELGTLNSTSFFNFYYPP(MSE)DLCSDNSI(MSE)IGWAGIEIWESLRLVSD LDICPIRQWPLNDLLSVDGWRTDQL ; _entity_poly.pdbx_seq_one_letter_code_can ;GAMDPRKGYKVLAIETSCDDTCVSVLDRFSKSAAPNVLANLKDTLDSIDEGGIIPTKAHIHHQARIGPLTERALIESNAR EGIDLICVTRGPGMPGSLSGGLDFAKGLAVAWNKPLIGVHHMLGHLLIPRMGTNGKVPQFPFVSLLVSGGHTTFVLSRAI DDHEILCDTIDIAVGDSLDKCGRELGFKGTMIAREMEKFINQDINDQDFALKLEMPSPLKNSASKRNMLSFSFSAFITAL RTNLTKLGKTEIQELPEREIRSIAYQVQESVFDHIINKLKHVLKSQPEKFKNVREFVCSGGVSSNQRLRTKLETELGTLN STSFFNFYYPPMDLCSDNSIMIGWAGIEIWESLRLVSDLDICPIRQWPLNDLLSVDGWRTDQL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 MSE n 1 4 ASP n 1 5 PRO n 1 6 ARG n 1 7 LYS n 1 8 GLY n 1 9 TYR n 1 10 LYS n 1 11 VAL n 1 12 LEU n 1 13 ALA n 1 14 ILE n 1 15 GLU n 1 16 THR n 1 17 SER n 1 18 CYS n 1 19 ASP n 1 20 ASP n 1 21 THR n 1 22 CYS n 1 23 VAL n 1 24 SER n 1 25 VAL n 1 26 LEU n 1 27 ASP n 1 28 ARG n 1 29 PHE n 1 30 SER n 1 31 LYS n 1 32 SER n 1 33 ALA n 1 34 ALA n 1 35 PRO n 1 36 ASN n 1 37 VAL n 1 38 LEU n 1 39 ALA n 1 40 ASN n 1 41 LEU n 1 42 LYS n 1 43 ASP n 1 44 THR n 1 45 LEU n 1 46 ASP n 1 47 SER n 1 48 ILE n 1 49 ASP n 1 50 GLU n 1 51 GLY n 1 52 GLY n 1 53 ILE n 1 54 ILE n 1 55 PRO n 1 56 THR n 1 57 LYS n 1 58 ALA n 1 59 HIS n 1 60 ILE n 1 61 HIS n 1 62 HIS n 1 63 GLN n 1 64 ALA n 1 65 ARG n 1 66 ILE n 1 67 GLY n 1 68 PRO n 1 69 LEU n 1 70 THR n 1 71 GLU n 1 72 ARG n 1 73 ALA n 1 74 LEU n 1 75 ILE n 1 76 GLU n 1 77 SER n 1 78 ASN n 1 79 ALA n 1 80 ARG n 1 81 GLU n 1 82 GLY n 1 83 ILE n 1 84 ASP n 1 85 LEU n 1 86 ILE n 1 87 CYS n 1 88 VAL n 1 89 THR n 1 90 ARG n 1 91 GLY n 1 92 PRO n 1 93 GLY n 1 94 MSE n 1 95 PRO n 1 96 GLY n 1 97 SER n 1 98 LEU n 1 99 SER n 1 100 GLY n 1 101 GLY n 1 102 LEU n 1 103 ASP n 1 104 PHE n 1 105 ALA n 1 106 LYS n 1 107 GLY n 1 108 LEU n 1 109 ALA n 1 110 VAL n 1 111 ALA n 1 112 TRP n 1 113 ASN n 1 114 LYS n 1 115 PRO n 1 116 LEU n 1 117 ILE n 1 118 GLY n 1 119 VAL n 1 120 HIS n 1 121 HIS n 1 122 MSE n 1 123 LEU n 1 124 GLY n 1 125 HIS n 1 126 LEU n 1 127 LEU n 1 128 ILE n 1 129 PRO n 1 130 ARG n 1 131 MSE n 1 132 GLY n 1 133 THR n 1 134 ASN n 1 135 GLY n 1 136 LYS n 1 137 VAL n 1 138 PRO n 1 139 GLN n 1 140 PHE n 1 141 PRO n 1 142 PHE n 1 143 VAL n 1 144 SER n 1 145 LEU n 1 146 LEU n 1 147 VAL n 1 148 SER n 1 149 GLY n 1 150 GLY n 1 151 HIS n 1 152 THR n 1 153 THR n 1 154 PHE n 1 155 VAL n 1 156 LEU n 1 157 SER n 1 158 ARG n 1 159 ALA n 1 160 ILE n 1 161 ASP n 1 162 ASP n 1 163 HIS n 1 164 GLU n 1 165 ILE n 1 166 LEU n 1 167 CYS n 1 168 ASP n 1 169 THR n 1 170 ILE n 1 171 ASP n 1 172 ILE n 1 173 ALA n 1 174 VAL n 1 175 GLY n 1 176 ASP n 1 177 SER n 1 178 LEU n 1 179 ASP n 1 180 LYS n 1 181 CYS n 1 182 GLY n 1 183 ARG n 1 184 GLU n 1 185 LEU n 1 186 GLY n 1 187 PHE n 1 188 LYS n 1 189 GLY n 1 190 THR n 1 191 MSE n 1 192 ILE n 1 193 ALA n 1 194 ARG n 1 195 GLU n 1 196 MSE n 1 197 GLU n 1 198 LYS n 1 199 PHE n 1 200 ILE n 1 201 ASN n 1 202 GLN n 1 203 ASP n 1 204 ILE n 1 205 ASN n 1 206 ASP n 1 207 GLN n 1 208 ASP n 1 209 PHE n 1 210 ALA n 1 211 LEU n 1 212 LYS n 1 213 LEU n 1 214 GLU n 1 215 MSE n 1 216 PRO n 1 217 SER n 1 218 PRO n 1 219 LEU n 1 220 LYS n 1 221 ASN n 1 222 SER n 1 223 ALA n 1 224 SER n 1 225 LYS n 1 226 ARG n 1 227 ASN n 1 228 MSE n 1 229 LEU n 1 230 SER n 1 231 PHE n 1 232 SER n 1 233 PHE n 1 234 SER n 1 235 ALA n 1 236 PHE n 1 237 ILE n 1 238 THR n 1 239 ALA n 1 240 LEU n 1 241 ARG n 1 242 THR n 1 243 ASN n 1 244 LEU n 1 245 THR n 1 246 LYS n 1 247 LEU n 1 248 GLY n 1 249 LYS n 1 250 THR n 1 251 GLU n 1 252 ILE n 1 253 GLN n 1 254 GLU n 1 255 LEU n 1 256 PRO n 1 257 GLU n 1 258 ARG n 1 259 GLU n 1 260 ILE n 1 261 ARG n 1 262 SER n 1 263 ILE n 1 264 ALA n 1 265 TYR n 1 266 GLN n 1 267 VAL n 1 268 GLN n 1 269 GLU n 1 270 SER n 1 271 VAL n 1 272 PHE n 1 273 ASP n 1 274 HIS n 1 275 ILE n 1 276 ILE n 1 277 ASN n 1 278 LYS n 1 279 LEU n 1 280 LYS n 1 281 HIS n 1 282 VAL n 1 283 LEU n 1 284 LYS n 1 285 SER n 1 286 GLN n 1 287 PRO n 1 288 GLU n 1 289 LYS n 1 290 PHE n 1 291 LYS n 1 292 ASN n 1 293 VAL n 1 294 ARG n 1 295 GLU n 1 296 PHE n 1 297 VAL n 1 298 CYS n 1 299 SER n 1 300 GLY n 1 301 GLY n 1 302 VAL n 1 303 SER n 1 304 SER n 1 305 ASN n 1 306 GLN n 1 307 ARG n 1 308 LEU n 1 309 ARG n 1 310 THR n 1 311 LYS n 1 312 LEU n 1 313 GLU n 1 314 THR n 1 315 GLU n 1 316 LEU n 1 317 GLY n 1 318 THR n 1 319 LEU n 1 320 ASN n 1 321 SER n 1 322 THR n 1 323 SER n 1 324 PHE n 1 325 PHE n 1 326 ASN n 1 327 PHE n 1 328 TYR n 1 329 TYR n 1 330 PRO n 1 331 PRO n 1 332 MSE n 1 333 ASP n 1 334 LEU n 1 335 CYS n 1 336 SER n 1 337 ASP n 1 338 ASN n 1 339 SER n 1 340 ILE n 1 341 MSE n 1 342 ILE n 1 343 GLY n 1 344 TRP n 1 345 ALA n 1 346 GLY n 1 347 ILE n 1 348 GLU n 1 349 ILE n 1 350 TRP n 1 351 GLU n 1 352 SER n 1 353 LEU n 1 354 ARG n 1 355 LEU n 1 356 VAL n 1 357 SER n 1 358 ASP n 1 359 LEU n 1 360 ASP n 1 361 ILE n 1 362 CYS n 1 363 PRO n 1 364 ILE n 1 365 ARG n 1 366 GLN n 1 367 TRP n 1 368 PRO n 1 369 LEU n 1 370 ASN n 1 371 ASP n 1 372 LEU n 1 373 LEU n 1 374 SER n 1 375 VAL n 1 376 ASP n 1 377 GLY n 1 378 TRP n 1 379 ARG n 1 380 THR n 1 381 ASP n 1 382 GLN n 1 383 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ;Baker's yeast ; _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'QRI7, YDL104C, D2366' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 204508 / S288c' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Saccharomyces cerevisiae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 559292 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code QRI7_YEAST _struct_ref.pdbx_db_accession P43122 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;RKGYKVLAIETSCDDTCVSVLDRFSKSAAPNVLANLKDTLDSIDEGGIIPTKAHIHHQARIGPLTERALIESNAREGIDL ICVTRGPGMPGSLSGGLDFAKGLAVAWNKPLIGVHHMLGHLLIPRMGTNGKVPQFPFVSLLVSGGHTTFVLSRAIDDHEI LCDTIDIAVGDSLDKCGRELGFKGTMIAREMEKFINQDINDQDFALKLEMPSPLKNSASKRNMLSFSFSAFITALRTNLT KLGKTEIQELPEREIRSIAYQVQESVFDHIINKLKHVLKSQPEKFKNVREFVCSGGVSSNQRLRTKLETELGTLNSTSFF NFYYPPMDLCSDNSIMIGWAGIEIWESLRLVSDLDICPIRQWPLNDLLSVDGWRTDQL ; _struct_ref.pdbx_align_begin 30 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4K25 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 6 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 383 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P43122 _struct_ref_seq.db_align_beg 30 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 407 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 30 _struct_ref_seq.pdbx_auth_seq_align_end 407 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4K25 GLY A 1 ? UNP P43122 ? ? 'EXPRESSION TAG' 25 1 1 4K25 ALA A 2 ? UNP P43122 ? ? 'EXPRESSION TAG' 26 2 1 4K25 MSE A 3 ? UNP P43122 ? ? 'EXPRESSION TAG' 27 3 1 4K25 ASP A 4 ? UNP P43122 ? ? 'EXPRESSION TAG' 28 4 1 4K25 PRO A 5 ? UNP P43122 ? ? 'EXPRESSION TAG' 29 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 4K25 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.36 _exptl_crystal.density_percent_sol 47.77 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '0.1M Tris, 8% PEG8000, 0.2M magnesium chloride, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277.15K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2011-07-20 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si (220), Si (311)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97933 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-E' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-E _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97933 # _reflns.entry_id 4K25 _reflns.observed_criterion_sigma_I 2.54 _reflns.observed_criterion_sigma_F 2.54 _reflns.d_resolution_low 20.58 _reflns.d_resolution_high 2.88 _reflns.number_obs 9434 _reflns.number_all 17164 _reflns.percent_possible_obs 55 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 77.86 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.88 _reflns_shell.d_res_low 2.98 _reflns_shell.percent_possible_all 99.6 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4K25 _refine.ls_number_reflns_obs 9434 _refine.ls_number_reflns_all 17164 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 3.3 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.58 _refine.ls_d_res_high 2.88 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.2456 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2401 _refine.ls_R_factor_R_free 0.2947 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.04 _refine.ls_number_reflns_R_free 947 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.9059 _refine.correlation_coeff_Fo_to_Fc_free 0.8745 _refine.B_iso_mean 81.54 _refine.aniso_B[1][1] -8.3918 _refine.aniso_B[2][2] 9.4455 _refine.aniso_B[3][3] -1.0536 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 4K25 _refine_analyze.Luzzati_coordinate_error_obs 0.625 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2698 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2700 _refine_hist.d_res_high 2.88 _refine_hist.d_res_low 20.58 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id t_bond_d 0.008 ? 2.00 2749 HARMONIC 'X-RAY DIFFRACTION' t_angle_deg 1.10 ? 2.00 3725 HARMONIC 'X-RAY DIFFRACTION' t_dihedral_angle_d ? ? 2.00 943 SINUSOIDAL 'X-RAY DIFFRACTION' t_trig_c_planes ? ? 2.00 65 HARMONIC 'X-RAY DIFFRACTION' t_gen_planes ? ? 5.00 402 HARMONIC 'X-RAY DIFFRACTION' t_it ? ? 20.00 2749 HARMONIC 'X-RAY DIFFRACTION' t_nbd ? ? 5.00 2 SEMIHARMONIC 'X-RAY DIFFRACTION' t_chiral_improper_torsion ? ? 5.00 372 SEMIHARMONIC 'X-RAY DIFFRACTION' t_ideal_dist_contact ? ? 4.00 3010 SEMIHARMONIC 'X-RAY DIFFRACTION' t_omega_torsion 2.03 ? ? ? ? 'X-RAY DIFFRACTION' t_other_torsion 20.74 ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 5 _refine_ls_shell.d_res_high 2.90 _refine_ls_shell.d_res_low 3.24 _refine_ls_shell.number_reflns_R_work 2357 _refine_ls_shell.R_factor_R_work 0.2755 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.3186 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 10.89 _refine_ls_shell.number_reflns_R_free 288 _refine_ls_shell.number_reflns_all 2645 _refine_ls_shell.R_factor_all 0.2802 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4K25 _struct.title 'Crystal Structure of yeast Qri7 homodimer' _struct.pdbx_descriptor 'Probable tRNA threonylcarbamoyladenosine biosynthesis protein QRI7, mitochondrial' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4K25 _struct_keywords.pdbx_keywords 'BIOSYNTHETIC PROTEIN' _struct_keywords.text 'ASKHA-fold, N6-threonylcarbamoylation enzyme, RNA and metabolite binding, mitochondria, BIOSYNTHETIC PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details 'The second part of the biological assembly is generated by the two-fold axis: -X, -Y, Z + (1 0 0)' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 57 ? GLU A 76 ? LYS A 81 GLU A 100 1 ? 20 HELX_P HELX_P2 2 MSE A 94 ? ASN A 113 ? MSE A 118 ASN A 137 1 ? 20 HELX_P HELX_P3 3 HIS A 120 ? ILE A 128 ? HIS A 144 ILE A 152 1 ? 9 HELX_P HELX_P4 4 PRO A 129 ? MSE A 131 ? PRO A 153 MSE A 155 5 ? 3 HELX_P HELX_P5 5 ALA A 173 ? GLY A 186 ? ALA A 197 GLY A 210 1 ? 14 HELX_P HELX_P6 6 MSE A 191 ? ASN A 201 ? MSE A 215 ASN A 225 1 ? 11 HELX_P HELX_P7 7 SER A 234 ? LEU A 247 ? SER A 258 LEU A 271 1 ? 14 HELX_P HELX_P8 8 PRO A 256 ? GLN A 286 ? PRO A 280 GLN A 310 1 ? 31 HELX_P HELX_P9 9 GLY A 301 ? SER A 304 ? GLY A 325 SER A 328 5 ? 4 HELX_P HELX_P10 10 ASN A 305 ? LEU A 316 ? ASN A 329 LEU A 340 1 ? 12 HELX_P HELX_P11 11 PRO A 331 ? SER A 336 ? PRO A 355 SER A 360 1 ? 6 HELX_P HELX_P12 12 SER A 339 ? LEU A 353 ? SER A 363 LEU A 377 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A GLY 93 C ? ? ? 1_555 A MSE 94 N ? ? A GLY 117 A MSE 118 1_555 ? ? ? ? ? ? ? 1.344 ? covale2 covale ? ? A MSE 94 C ? ? ? 1_555 A PRO 95 N ? ? A MSE 118 A PRO 119 1_555 ? ? ? ? ? ? ? 1.356 ? covale3 covale ? ? A HIS 121 C ? ? ? 1_555 A MSE 122 N ? ? A HIS 145 A MSE 146 1_555 ? ? ? ? ? ? ? 1.346 ? covale4 covale ? ? A MSE 122 C ? ? ? 1_555 A LEU 123 N ? ? A MSE 146 A LEU 147 1_555 ? ? ? ? ? ? ? 1.350 ? covale5 covale ? ? A ARG 130 C ? ? ? 1_555 A MSE 131 N ? ? A ARG 154 A MSE 155 1_555 ? ? ? ? ? ? ? 1.353 ? covale6 covale ? ? A MSE 131 C ? ? ? 1_555 A GLY 132 N ? ? A MSE 155 A GLY 156 1_555 ? ? ? ? ? ? ? 1.336 ? covale7 covale ? ? A THR 190 C ? ? ? 1_555 A MSE 191 N ? ? A THR 214 A MSE 215 1_555 ? ? ? ? ? ? ? 1.347 ? covale8 covale ? ? A MSE 191 C ? ? ? 1_555 A ILE 192 N ? ? A MSE 215 A ILE 216 1_555 ? ? ? ? ? ? ? 1.353 ? covale9 covale ? ? A GLU 195 C ? ? ? 1_555 A MSE 196 N ? ? A GLU 219 A MSE 220 1_555 ? ? ? ? ? ? ? 1.355 ? covale10 covale ? ? A MSE 196 C ? ? ? 1_555 A GLU 197 N ? ? A MSE 220 A GLU 221 1_555 ? ? ? ? ? ? ? 1.357 ? covale11 covale ? ? A GLU 214 C ? ? ? 1_555 A MSE 215 N ? ? A GLU 238 A MSE 239 1_555 ? ? ? ? ? ? ? 1.346 ? covale12 covale ? ? A ASN 227 C ? ? ? 1_555 A MSE 228 N ? ? A ASN 251 A MSE 252 1_555 ? ? ? ? ? ? ? 1.346 ? covale13 covale ? ? A MSE 228 C ? ? ? 1_555 A LEU 229 N ? ? A MSE 252 A LEU 253 1_555 ? ? ? ? ? ? ? 1.350 ? covale14 covale ? ? A PRO 331 C ? ? ? 1_555 A MSE 332 N ? ? A PRO 355 A MSE 356 1_555 ? ? ? ? ? ? ? 1.344 ? covale15 covale ? ? A MSE 332 C ? ? ? 1_555 A ASP 333 N ? ? A MSE 356 A ASP 357 1_555 ? ? ? ? ? ? ? 1.350 ? covale16 covale ? ? A ILE 340 C ? ? ? 1_555 A MSE 341 N ? ? A ILE 364 A MSE 365 1_555 ? ? ? ? ? ? ? 1.341 ? covale17 covale ? ? A MSE 341 C ? ? ? 1_555 A ILE 342 N ? ? A MSE 365 A ILE 366 1_555 ? ? ? ? ? ? ? 1.355 ? metalc1 metalc ? ? A ASP 337 OD1 ? ? ? 1_555 B ZN . ZN ? ? A ASP 361 A ZN 601 1_555 ? ? ? ? ? ? ? 2.167 ? metalc2 metalc ? ? A HIS 121 NE2 ? ? ? 1_555 B ZN . ZN ? ? A HIS 145 A ZN 601 1_555 ? ? ? ? ? ? ? 2.266 ? metalc3 metalc ? ? A ASP 337 OD2 ? ? ? 1_555 B ZN . ZN ? ? A ASP 361 A ZN 601 1_555 ? ? ? ? ? ? ? 2.619 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 6 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? parallel B 5 6 ? parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASN A 36 ? ASP A 43 ? ASN A 60 ASP A 67 A 2 ASP A 20 ? ASP A 27 ? ASP A 44 ASP A 51 A 3 LYS A 10 ? GLU A 15 ? LYS A 34 GLU A 39 A 4 LEU A 85 ? THR A 89 ? LEU A 109 THR A 113 A 5 LEU A 116 ? VAL A 119 ? LEU A 140 VAL A 143 B 1 SER A 230 ? PHE A 231 ? SER A 254 PHE A 255 B 2 HIS A 163 ? THR A 169 ? HIS A 187 THR A 193 B 3 THR A 152 ? SER A 157 ? THR A 176 SER A 181 B 4 PHE A 142 ? VAL A 147 ? PHE A 166 VAL A 171 B 5 PHE A 296 ? SER A 299 ? PHE A 320 SER A 323 B 6 PHE A 327 ? TYR A 328 ? PHE A 351 TYR A 352 C 1 LEU A 355 ? SER A 357 ? LEU A 379 SER A 381 C 2 TRP A 378 ? THR A 380 ? TRP A 402 THR A 404 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ASN A 40 ? O ASN A 64 N VAL A 23 ? N VAL A 47 A 2 3 O LEU A 26 ? O LEU A 50 N VAL A 11 ? N VAL A 35 A 3 4 N LEU A 12 ? N LEU A 36 O CYS A 87 ? O CYS A 111 A 4 5 N VAL A 88 ? N VAL A 112 O VAL A 119 ? O VAL A 143 B 1 2 O PHE A 231 ? O PHE A 255 N ASP A 168 ? N ASP A 192 B 2 3 O GLU A 164 ? O GLU A 188 N LEU A 156 ? N LEU A 180 B 3 4 O THR A 153 ? O THR A 177 N LEU A 146 ? N LEU A 170 B 4 5 N LEU A 145 ? N LEU A 169 O VAL A 297 ? O VAL A 321 B 5 6 N PHE A 296 ? N PHE A 320 O TYR A 328 ? O TYR A 352 C 1 2 N VAL A 356 ? N VAL A 380 O ARG A 379 ? O ARG A 403 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A 601' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE CA A 602' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 HIS A 121 ? HIS A 145 . ? 1_555 ? 2 AC1 4 HIS A 125 ? HIS A 149 . ? 1_555 ? 3 AC1 4 HIS A 151 ? HIS A 175 . ? 1_555 ? 4 AC1 4 ASP A 337 ? ASP A 361 . ? 1_555 ? 5 AC2 3 ASP A 203 ? ASP A 227 . ? 3_646 ? 6 AC2 3 ASP A 360 ? ASP A 384 . ? 1_555 ? 7 AC2 3 ASP A 376 ? ASP A 400 . ? 1_555 ? # _database_PDB_matrix.entry_id 4K25 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4K25 _atom_sites.fract_transf_matrix[1][1] 0.015481 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007635 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020892 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O S SE ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 25 ? ? ? A . n A 1 2 ALA 2 26 ? ? ? A . n A 1 3 MSE 3 27 ? ? ? A . n A 1 4 ASP 4 28 ? ? ? A . n A 1 5 PRO 5 29 ? ? ? A . n A 1 6 ARG 6 30 ? ? ? A . n A 1 7 LYS 7 31 ? ? ? A . n A 1 8 GLY 8 32 ? ? ? A . n A 1 9 TYR 9 33 33 TYR TYR A . n A 1 10 LYS 10 34 34 LYS LYS A . n A 1 11 VAL 11 35 35 VAL VAL A . n A 1 12 LEU 12 36 36 LEU LEU A . n A 1 13 ALA 13 37 37 ALA ALA A . n A 1 14 ILE 14 38 38 ILE ILE A . n A 1 15 GLU 15 39 39 GLU GLU A . n A 1 16 THR 16 40 40 THR THR A . n A 1 17 SER 17 41 41 SER SER A . n A 1 18 CYS 18 42 42 CYS CYS A . n A 1 19 ASP 19 43 43 ASP ASP A . n A 1 20 ASP 20 44 44 ASP ASP A . n A 1 21 THR 21 45 45 THR THR A . n A 1 22 CYS 22 46 46 CYS CYS A . n A 1 23 VAL 23 47 47 VAL VAL A . n A 1 24 SER 24 48 48 SER SER A . n A 1 25 VAL 25 49 49 VAL VAL A . n A 1 26 LEU 26 50 50 LEU LEU A . n A 1 27 ASP 27 51 51 ASP ASP A . n A 1 28 ARG 28 52 52 ARG ARG A . n A 1 29 PHE 29 53 53 PHE PHE A . n A 1 30 SER 30 54 54 SER SER A . n A 1 31 LYS 31 55 55 LYS LYS A . n A 1 32 SER 32 56 56 SER SER A . n A 1 33 ALA 33 57 57 ALA ALA A . n A 1 34 ALA 34 58 58 ALA ALA A . n A 1 35 PRO 35 59 59 PRO PRO A . n A 1 36 ASN 36 60 60 ASN ASN A . n A 1 37 VAL 37 61 61 VAL VAL A . n A 1 38 LEU 38 62 62 LEU LEU A . n A 1 39 ALA 39 63 63 ALA ALA A . n A 1 40 ASN 40 64 64 ASN ASN A . n A 1 41 LEU 41 65 65 LEU LEU A . n A 1 42 LYS 42 66 66 LYS LYS A . n A 1 43 ASP 43 67 67 ASP ASP A . n A 1 44 THR 44 68 68 THR THR A . n A 1 45 LEU 45 69 69 LEU LEU A . n A 1 46 ASP 46 70 70 ASP ASP A . n A 1 47 SER 47 71 71 SER SER A . n A 1 48 ILE 48 72 ? ? ? A . n A 1 49 ASP 49 73 ? ? ? A . n A 1 50 GLU 50 74 ? ? ? A . n A 1 51 GLY 51 75 ? ? ? A . n A 1 52 GLY 52 76 ? ? ? A . n A 1 53 ILE 53 77 ? ? ? A . n A 1 54 ILE 54 78 ? ? ? A . n A 1 55 PRO 55 79 ? ? ? A . n A 1 56 THR 56 80 80 THR THR A . n A 1 57 LYS 57 81 81 LYS LYS A . n A 1 58 ALA 58 82 82 ALA ALA A . n A 1 59 HIS 59 83 83 HIS HIS A . n A 1 60 ILE 60 84 84 ILE ILE A . n A 1 61 HIS 61 85 85 HIS HIS A . n A 1 62 HIS 62 86 86 HIS HIS A . n A 1 63 GLN 63 87 87 GLN GLN A . n A 1 64 ALA 64 88 88 ALA ALA A . n A 1 65 ARG 65 89 89 ARG ARG A . n A 1 66 ILE 66 90 90 ILE ILE A . n A 1 67 GLY 67 91 91 GLY GLY A . n A 1 68 PRO 68 92 92 PRO PRO A . n A 1 69 LEU 69 93 93 LEU LEU A . n A 1 70 THR 70 94 94 THR THR A . n A 1 71 GLU 71 95 95 GLU GLU A . n A 1 72 ARG 72 96 96 ARG ARG A . n A 1 73 ALA 73 97 97 ALA ALA A . n A 1 74 LEU 74 98 98 LEU LEU A . n A 1 75 ILE 75 99 99 ILE ILE A . n A 1 76 GLU 76 100 100 GLU GLU A . n A 1 77 SER 77 101 101 SER SER A . n A 1 78 ASN 78 102 102 ASN ASN A . n A 1 79 ALA 79 103 103 ALA ALA A . n A 1 80 ARG 80 104 104 ARG ARG A . n A 1 81 GLU 81 105 105 GLU GLU A . n A 1 82 GLY 82 106 106 GLY GLY A . n A 1 83 ILE 83 107 107 ILE ILE A . n A 1 84 ASP 84 108 108 ASP ASP A . n A 1 85 LEU 85 109 109 LEU LEU A . n A 1 86 ILE 86 110 110 ILE ILE A . n A 1 87 CYS 87 111 111 CYS CYS A . n A 1 88 VAL 88 112 112 VAL VAL A . n A 1 89 THR 89 113 113 THR THR A . n A 1 90 ARG 90 114 114 ARG ARG A . n A 1 91 GLY 91 115 115 GLY GLY A . n A 1 92 PRO 92 116 116 PRO PRO A . n A 1 93 GLY 93 117 117 GLY GLY A . n A 1 94 MSE 94 118 118 MSE MSE A . n A 1 95 PRO 95 119 119 PRO PRO A . n A 1 96 GLY 96 120 120 GLY GLY A . n A 1 97 SER 97 121 121 SER SER A . n A 1 98 LEU 98 122 122 LEU LEU A . n A 1 99 SER 99 123 123 SER SER A . n A 1 100 GLY 100 124 124 GLY GLY A . n A 1 101 GLY 101 125 125 GLY GLY A . n A 1 102 LEU 102 126 126 LEU LEU A . n A 1 103 ASP 103 127 127 ASP ASP A . n A 1 104 PHE 104 128 128 PHE PHE A . n A 1 105 ALA 105 129 129 ALA ALA A . n A 1 106 LYS 106 130 130 LYS LYS A . n A 1 107 GLY 107 131 131 GLY GLY A . n A 1 108 LEU 108 132 132 LEU LEU A . n A 1 109 ALA 109 133 133 ALA ALA A . n A 1 110 VAL 110 134 134 VAL VAL A . n A 1 111 ALA 111 135 135 ALA ALA A . n A 1 112 TRP 112 136 136 TRP TRP A . n A 1 113 ASN 113 137 137 ASN ASN A . n A 1 114 LYS 114 138 138 LYS LYS A . n A 1 115 PRO 115 139 139 PRO PRO A . n A 1 116 LEU 116 140 140 LEU LEU A . n A 1 117 ILE 117 141 141 ILE ILE A . n A 1 118 GLY 118 142 142 GLY GLY A . n A 1 119 VAL 119 143 143 VAL VAL A . n A 1 120 HIS 120 144 144 HIS HIS A . n A 1 121 HIS 121 145 145 HIS HIS A . n A 1 122 MSE 122 146 146 MSE MSE A . n A 1 123 LEU 123 147 147 LEU LEU A . n A 1 124 GLY 124 148 148 GLY GLY A . n A 1 125 HIS 125 149 149 HIS HIS A . n A 1 126 LEU 126 150 150 LEU LEU A . n A 1 127 LEU 127 151 151 LEU LEU A . n A 1 128 ILE 128 152 152 ILE ILE A . n A 1 129 PRO 129 153 153 PRO PRO A . n A 1 130 ARG 130 154 154 ARG ARG A . n A 1 131 MSE 131 155 155 MSE MSE A . n A 1 132 GLY 132 156 156 GLY GLY A . n A 1 133 THR 133 157 157 THR THR A . n A 1 134 ASN 134 158 158 ASN ASN A . n A 1 135 GLY 135 159 159 GLY GLY A . n A 1 136 LYS 136 160 160 LYS LYS A . n A 1 137 VAL 137 161 161 VAL VAL A . n A 1 138 PRO 138 162 162 PRO PRO A . n A 1 139 GLN 139 163 163 GLN GLN A . n A 1 140 PHE 140 164 164 PHE PHE A . n A 1 141 PRO 141 165 165 PRO PRO A . n A 1 142 PHE 142 166 166 PHE PHE A . n A 1 143 VAL 143 167 167 VAL VAL A . n A 1 144 SER 144 168 168 SER SER A . n A 1 145 LEU 145 169 169 LEU LEU A . n A 1 146 LEU 146 170 170 LEU LEU A . n A 1 147 VAL 147 171 171 VAL VAL A . n A 1 148 SER 148 172 172 SER SER A . n A 1 149 GLY 149 173 173 GLY GLY A . n A 1 150 GLY 150 174 174 GLY GLY A . n A 1 151 HIS 151 175 175 HIS HIS A . n A 1 152 THR 152 176 176 THR THR A . n A 1 153 THR 153 177 177 THR THR A . n A 1 154 PHE 154 178 178 PHE PHE A . n A 1 155 VAL 155 179 179 VAL VAL A . n A 1 156 LEU 156 180 180 LEU LEU A . n A 1 157 SER 157 181 181 SER SER A . n A 1 158 ARG 158 182 182 ARG ARG A . n A 1 159 ALA 159 183 183 ALA ALA A . n A 1 160 ILE 160 184 184 ILE ILE A . n A 1 161 ASP 161 185 185 ASP ASP A . n A 1 162 ASP 162 186 186 ASP ASP A . n A 1 163 HIS 163 187 187 HIS HIS A . n A 1 164 GLU 164 188 188 GLU GLU A . n A 1 165 ILE 165 189 189 ILE ILE A . n A 1 166 LEU 166 190 190 LEU LEU A . n A 1 167 CYS 167 191 191 CYS CYS A . n A 1 168 ASP 168 192 192 ASP ASP A . n A 1 169 THR 169 193 193 THR THR A . n A 1 170 ILE 170 194 194 ILE ILE A . n A 1 171 ASP 171 195 195 ASP ASP A . n A 1 172 ILE 172 196 196 ILE ILE A . n A 1 173 ALA 173 197 197 ALA ALA A . n A 1 174 VAL 174 198 198 VAL VAL A . n A 1 175 GLY 175 199 199 GLY GLY A . n A 1 176 ASP 176 200 200 ASP ASP A . n A 1 177 SER 177 201 201 SER SER A . n A 1 178 LEU 178 202 202 LEU LEU A . n A 1 179 ASP 179 203 203 ASP ASP A . n A 1 180 LYS 180 204 204 LYS LYS A . n A 1 181 CYS 181 205 205 CYS CYS A . n A 1 182 GLY 182 206 206 GLY GLY A . n A 1 183 ARG 183 207 207 ARG ARG A . n A 1 184 GLU 184 208 208 GLU GLU A . n A 1 185 LEU 185 209 209 LEU LEU A . n A 1 186 GLY 186 210 210 GLY GLY A . n A 1 187 PHE 187 211 211 PHE PHE A . n A 1 188 LYS 188 212 212 LYS LYS A . n A 1 189 GLY 189 213 213 GLY GLY A . n A 1 190 THR 190 214 214 THR THR A . n A 1 191 MSE 191 215 215 MSE MSE A . n A 1 192 ILE 192 216 216 ILE ILE A . n A 1 193 ALA 193 217 217 ALA ALA A . n A 1 194 ARG 194 218 218 ARG ARG A . n A 1 195 GLU 195 219 219 GLU GLU A . n A 1 196 MSE 196 220 220 MSE MSE A . n A 1 197 GLU 197 221 221 GLU GLU A . n A 1 198 LYS 198 222 222 LYS LYS A . n A 1 199 PHE 199 223 223 PHE PHE A . n A 1 200 ILE 200 224 224 ILE ILE A . n A 1 201 ASN 201 225 225 ASN ASN A . n A 1 202 GLN 202 226 226 GLN GLN A . n A 1 203 ASP 203 227 227 ASP ASP A . n A 1 204 ILE 204 228 228 ILE ILE A . n A 1 205 ASN 205 229 229 ASN ASN A . n A 1 206 ASP 206 230 230 ASP ASP A . n A 1 207 GLN 207 231 231 GLN GLN A . n A 1 208 ASP 208 232 232 ASP ASP A . n A 1 209 PHE 209 233 233 PHE PHE A . n A 1 210 ALA 210 234 234 ALA ALA A . n A 1 211 LEU 211 235 235 LEU LEU A . n A 1 212 LYS 212 236 236 LYS LYS A . n A 1 213 LEU 213 237 237 LEU LEU A . n A 1 214 GLU 214 238 238 GLU GLU A . n A 1 215 MSE 215 239 239 MSE MSE A . n A 1 216 PRO 216 240 ? ? ? A . n A 1 217 SER 217 241 ? ? ? A . n A 1 218 PRO 218 242 ? ? ? A . n A 1 219 LEU 219 243 ? ? ? A . n A 1 220 LYS 220 244 ? ? ? A . n A 1 221 ASN 221 245 ? ? ? A . n A 1 222 SER 222 246 ? ? ? A . n A 1 223 ALA 223 247 ? ? ? A . n A 1 224 SER 224 248 ? ? ? A . n A 1 225 LYS 225 249 ? ? ? A . n A 1 226 ARG 226 250 ? ? ? A . n A 1 227 ASN 227 251 251 ASN ASN A . n A 1 228 MSE 228 252 252 MSE MSE A . n A 1 229 LEU 229 253 253 LEU LEU A . n A 1 230 SER 230 254 254 SER SER A . n A 1 231 PHE 231 255 255 PHE PHE A . n A 1 232 SER 232 256 256 SER SER A . n A 1 233 PHE 233 257 257 PHE PHE A . n A 1 234 SER 234 258 258 SER SER A . n A 1 235 ALA 235 259 259 ALA ALA A . n A 1 236 PHE 236 260 260 PHE PHE A . n A 1 237 ILE 237 261 261 ILE ILE A . n A 1 238 THR 238 262 262 THR THR A . n A 1 239 ALA 239 263 263 ALA ALA A . n A 1 240 LEU 240 264 264 LEU LEU A . n A 1 241 ARG 241 265 265 ARG ARG A . n A 1 242 THR 242 266 266 THR THR A . n A 1 243 ASN 243 267 267 ASN ASN A . n A 1 244 LEU 244 268 268 LEU LEU A . n A 1 245 THR 245 269 269 THR THR A . n A 1 246 LYS 246 270 270 LYS LYS A . n A 1 247 LEU 247 271 271 LEU LEU A . n A 1 248 GLY 248 272 272 GLY GLY A . n A 1 249 LYS 249 273 273 LYS LYS A . n A 1 250 THR 250 274 274 THR THR A . n A 1 251 GLU 251 275 275 GLU GLU A . n A 1 252 ILE 252 276 276 ILE ILE A . n A 1 253 GLN 253 277 277 GLN GLN A . n A 1 254 GLU 254 278 278 GLU GLU A . n A 1 255 LEU 255 279 279 LEU LEU A . n A 1 256 PRO 256 280 280 PRO PRO A . n A 1 257 GLU 257 281 281 GLU GLU A . n A 1 258 ARG 258 282 282 ARG ARG A . n A 1 259 GLU 259 283 283 GLU GLU A . n A 1 260 ILE 260 284 284 ILE ILE A . n A 1 261 ARG 261 285 285 ARG ARG A . n A 1 262 SER 262 286 286 SER SER A . n A 1 263 ILE 263 287 287 ILE ILE A . n A 1 264 ALA 264 288 288 ALA ALA A . n A 1 265 TYR 265 289 289 TYR TYR A . n A 1 266 GLN 266 290 290 GLN GLN A . n A 1 267 VAL 267 291 291 VAL VAL A . n A 1 268 GLN 268 292 292 GLN GLN A . n A 1 269 GLU 269 293 293 GLU GLU A . n A 1 270 SER 270 294 294 SER SER A . n A 1 271 VAL 271 295 295 VAL VAL A . n A 1 272 PHE 272 296 296 PHE PHE A . n A 1 273 ASP 273 297 297 ASP ASP A . n A 1 274 HIS 274 298 298 HIS HIS A . n A 1 275 ILE 275 299 299 ILE ILE A . n A 1 276 ILE 276 300 300 ILE ILE A . n A 1 277 ASN 277 301 301 ASN ASN A . n A 1 278 LYS 278 302 302 LYS LYS A . n A 1 279 LEU 279 303 303 LEU LEU A . n A 1 280 LYS 280 304 304 LYS LYS A . n A 1 281 HIS 281 305 305 HIS HIS A . n A 1 282 VAL 282 306 306 VAL VAL A . n A 1 283 LEU 283 307 307 LEU LEU A . n A 1 284 LYS 284 308 308 LYS LYS A . n A 1 285 SER 285 309 309 SER SER A . n A 1 286 GLN 286 310 310 GLN GLN A . n A 1 287 PRO 287 311 311 PRO PRO A . n A 1 288 GLU 288 312 312 GLU GLU A . n A 1 289 LYS 289 313 313 LYS LYS A . n A 1 290 PHE 290 314 314 PHE PHE A . n A 1 291 LYS 291 315 315 LYS LYS A . n A 1 292 ASN 292 316 316 ASN ASN A . n A 1 293 VAL 293 317 317 VAL VAL A . n A 1 294 ARG 294 318 318 ARG ARG A . n A 1 295 GLU 295 319 319 GLU GLU A . n A 1 296 PHE 296 320 320 PHE PHE A . n A 1 297 VAL 297 321 321 VAL VAL A . n A 1 298 CYS 298 322 322 CYS CYS A . n A 1 299 SER 299 323 323 SER SER A . n A 1 300 GLY 300 324 324 GLY GLY A . n A 1 301 GLY 301 325 325 GLY GLY A . n A 1 302 VAL 302 326 326 VAL VAL A . n A 1 303 SER 303 327 327 SER SER A . n A 1 304 SER 304 328 328 SER SER A . n A 1 305 ASN 305 329 329 ASN ASN A . n A 1 306 GLN 306 330 330 GLN GLN A . n A 1 307 ARG 307 331 331 ARG ARG A . n A 1 308 LEU 308 332 332 LEU LEU A . n A 1 309 ARG 309 333 333 ARG ARG A . n A 1 310 THR 310 334 334 THR THR A . n A 1 311 LYS 311 335 335 LYS LYS A . n A 1 312 LEU 312 336 336 LEU LEU A . n A 1 313 GLU 313 337 337 GLU GLU A . n A 1 314 THR 314 338 338 THR THR A . n A 1 315 GLU 315 339 339 GLU GLU A . n A 1 316 LEU 316 340 340 LEU LEU A . n A 1 317 GLY 317 341 341 GLY GLY A . n A 1 318 THR 318 342 342 THR THR A . n A 1 319 LEU 319 343 343 LEU LEU A . n A 1 320 ASN 320 344 344 ASN ASN A . n A 1 321 SER 321 345 345 SER SER A . n A 1 322 THR 322 346 346 THR THR A . n A 1 323 SER 323 347 347 SER SER A . n A 1 324 PHE 324 348 348 PHE PHE A . n A 1 325 PHE 325 349 349 PHE PHE A . n A 1 326 ASN 326 350 350 ASN ASN A . n A 1 327 PHE 327 351 351 PHE PHE A . n A 1 328 TYR 328 352 352 TYR TYR A . n A 1 329 TYR 329 353 353 TYR TYR A . n A 1 330 PRO 330 354 354 PRO PRO A . n A 1 331 PRO 331 355 355 PRO PRO A . n A 1 332 MSE 332 356 356 MSE MSE A . n A 1 333 ASP 333 357 357 ASP ASP A . n A 1 334 LEU 334 358 358 LEU LEU A . n A 1 335 CYS 335 359 359 CYS CYS A . n A 1 336 SER 336 360 360 SER SER A . n A 1 337 ASP 337 361 361 ASP ASP A . n A 1 338 ASN 338 362 362 ASN ASN A . n A 1 339 SER 339 363 363 SER SER A . n A 1 340 ILE 340 364 364 ILE ILE A . n A 1 341 MSE 341 365 365 MSE MSE A . n A 1 342 ILE 342 366 366 ILE ILE A . n A 1 343 GLY 343 367 367 GLY GLY A . n A 1 344 TRP 344 368 368 TRP TRP A . n A 1 345 ALA 345 369 369 ALA ALA A . n A 1 346 GLY 346 370 370 GLY GLY A . n A 1 347 ILE 347 371 371 ILE ILE A . n A 1 348 GLU 348 372 372 GLU GLU A . n A 1 349 ILE 349 373 373 ILE ILE A . n A 1 350 TRP 350 374 374 TRP TRP A . n A 1 351 GLU 351 375 375 GLU GLU A . n A 1 352 SER 352 376 376 SER SER A . n A 1 353 LEU 353 377 377 LEU LEU A . n A 1 354 ARG 354 378 378 ARG ARG A . n A 1 355 LEU 355 379 379 LEU LEU A . n A 1 356 VAL 356 380 380 VAL VAL A . n A 1 357 SER 357 381 381 SER SER A . n A 1 358 ASP 358 382 382 ASP ASP A . n A 1 359 LEU 359 383 383 LEU LEU A . n A 1 360 ASP 360 384 384 ASP ASP A . n A 1 361 ILE 361 385 385 ILE ILE A . n A 1 362 CYS 362 386 386 CYS CYS A . n A 1 363 PRO 363 387 387 PRO PRO A . n A 1 364 ILE 364 388 388 ILE ILE A . n A 1 365 ARG 365 389 389 ARG ARG A . n A 1 366 GLN 366 390 390 GLN GLN A . n A 1 367 TRP 367 391 391 TRP TRP A . n A 1 368 PRO 368 392 392 PRO PRO A . n A 1 369 LEU 369 393 393 LEU LEU A . n A 1 370 ASN 370 394 394 ASN ASN A . n A 1 371 ASP 371 395 395 ASP ASP A . n A 1 372 LEU 372 396 396 LEU LEU A . n A 1 373 LEU 373 397 397 LEU LEU A . n A 1 374 SER 374 398 398 SER SER A . n A 1 375 VAL 375 399 399 VAL VAL A . n A 1 376 ASP 376 400 400 ASP ASP A . n A 1 377 GLY 377 401 401 GLY GLY A . n A 1 378 TRP 378 402 402 TRP TRP A . n A 1 379 ARG 379 403 403 ARG ARG A . n A 1 380 THR 380 404 404 THR THR A . n A 1 381 ASP 381 405 405 ASP ASP A . n A 1 382 GLN 382 406 406 GLN GLN A . n A 1 383 LEU 383 407 ? ? ? A . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 94 A MSE 118 ? MET SELENOMETHIONINE 2 A MSE 122 A MSE 146 ? MET SELENOMETHIONINE 3 A MSE 131 A MSE 155 ? MET SELENOMETHIONINE 4 A MSE 191 A MSE 215 ? MET SELENOMETHIONINE 5 A MSE 196 A MSE 220 ? MET SELENOMETHIONINE 6 A MSE 215 A MSE 239 ? MET SELENOMETHIONINE 7 A MSE 228 A MSE 252 ? MET SELENOMETHIONINE 8 A MSE 332 A MSE 356 ? MET SELENOMETHIONINE 9 A MSE 341 A MSE 365 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2420 ? 1 MORE -95 ? 1 'SSA (A^2)' 30050 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_755 -x+2,-y,z -1.0000000000 0.0000000000 0.0000000000 129.1940000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASP 337 ? A ASP 361 ? 1_555 ZN ? B ZN . ? A ZN 601 ? 1_555 NE2 ? A HIS 121 ? A HIS 145 ? 1_555 79.4 ? 2 OD1 ? A ASP 337 ? A ASP 361 ? 1_555 ZN ? B ZN . ? A ZN 601 ? 1_555 OD2 ? A ASP 337 ? A ASP 361 ? 1_555 53.6 ? 3 NE2 ? A HIS 121 ? A HIS 145 ? 1_555 ZN ? B ZN . ? A ZN 601 ? 1_555 OD2 ? A ASP 337 ? A ASP 361 ? 1_555 111.8 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-05-08 2 'Structure model' 1 1 2013-08-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 46.0749 _pdbx_refine_tls.origin_y 17.5080 _pdbx_refine_tls.origin_z 24.6981 _pdbx_refine_tls.T[1][1] 0.4964 _pdbx_refine_tls.T[2][2] 0.1116 _pdbx_refine_tls.T[3][3] 0.0212 _pdbx_refine_tls.T[1][2] -0.1017 _pdbx_refine_tls.T[1][3] 0.1908 _pdbx_refine_tls.T[2][3] -0.1206 _pdbx_refine_tls.L[1][1] 1.6121 _pdbx_refine_tls.L[2][2] 7.9538 _pdbx_refine_tls.L[3][3] 3.4731 _pdbx_refine_tls.L[1][2] -2.7586 _pdbx_refine_tls.L[1][3] 1.3218 _pdbx_refine_tls.L[2][3] -1.9238 _pdbx_refine_tls.S[1][1] -0.0837 _pdbx_refine_tls.S[2][2] -0.0687 _pdbx_refine_tls.S[3][3] 0.1525 _pdbx_refine_tls.S[1][2] 0.1145 _pdbx_refine_tls.S[1][3] -0.1340 _pdbx_refine_tls.S[2][3] 0.2469 _pdbx_refine_tls.S[2][1] 0.3287 _pdbx_refine_tls.S[3][1] -0.2372 _pdbx_refine_tls.S[3][2] 0.0716 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 33 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 602 _pdbx_refine_tls_group.selection_details '{ A|33 - A|602 }' _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 SHELXD phasing . ? 2 BUSTER refinement 2.8.0 ? 3 XDS 'data reduction' . ? 4 XDS 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS A 42 ? ? -100.09 -106.82 2 1 SER A 56 ? ? -155.90 -11.42 3 1 ALA A 58 ? ? -144.51 59.06 4 1 LYS A 160 ? ? -125.80 -59.06 5 1 THR A 176 ? ? -171.28 73.93 6 1 ASP A 195 ? ? -98.64 -116.54 7 1 LYS A 212 ? ? -148.55 35.22 8 1 ASP A 227 ? ? -164.80 83.15 9 1 GLU A 275 ? ? -62.13 98.78 10 1 GLN A 390 ? ? -117.67 57.39 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASN 60 ? CG ? A ASN 36 CG 2 1 Y 1 A ASN 60 ? OD1 ? A ASN 36 OD1 3 1 Y 1 A ASN 60 ? ND2 ? A ASN 36 ND2 4 1 Y 1 A LEU 62 ? CG ? A LEU 38 CG 5 1 Y 1 A LEU 62 ? CD1 ? A LEU 38 CD1 6 1 Y 1 A LEU 62 ? CD2 ? A LEU 38 CD2 7 1 Y 1 A LEU 65 ? CG ? A LEU 41 CG 8 1 Y 1 A LEU 65 ? CD1 ? A LEU 41 CD1 9 1 Y 1 A LEU 65 ? CD2 ? A LEU 41 CD2 10 1 Y 1 A LYS 66 ? CG ? A LYS 42 CG 11 1 Y 1 A LYS 66 ? CD ? A LYS 42 CD 12 1 Y 1 A LYS 66 ? CE ? A LYS 42 CE 13 1 Y 1 A LYS 66 ? NZ ? A LYS 42 NZ 14 1 Y 1 A ARG 96 ? CG ? A ARG 72 CG 15 1 Y 1 A ARG 96 ? CD ? A ARG 72 CD 16 1 Y 1 A ARG 96 ? NE ? A ARG 72 NE 17 1 Y 1 A ARG 96 ? CZ ? A ARG 72 CZ 18 1 Y 1 A ARG 96 ? NH1 ? A ARG 72 NH1 19 1 Y 1 A ARG 96 ? NH2 ? A ARG 72 NH2 20 1 Y 1 A ASN 102 ? CG ? A ASN 78 CG 21 1 Y 1 A ASN 102 ? OD1 ? A ASN 78 OD1 22 1 Y 1 A ASN 102 ? ND2 ? A ASN 78 ND2 23 1 Y 1 A ILE 107 ? CG1 ? A ILE 83 CG1 24 1 Y 1 A ILE 107 ? CG2 ? A ILE 83 CG2 25 1 Y 1 A ILE 107 ? CD1 ? A ILE 83 CD1 26 1 Y 1 A ILE 141 ? CG1 ? A ILE 117 CG1 27 1 Y 1 A ILE 141 ? CG2 ? A ILE 117 CG2 28 1 Y 1 A ILE 141 ? CD1 ? A ILE 117 CD1 29 1 Y 1 A ILE 152 ? CG1 ? A ILE 128 CG1 30 1 Y 1 A ILE 152 ? CG2 ? A ILE 128 CG2 31 1 Y 1 A ILE 152 ? CD1 ? A ILE 128 CD1 32 1 Y 1 A ASP 203 ? CG ? A ASP 179 CG 33 1 Y 1 A ASP 203 ? OD1 ? A ASP 179 OD1 34 1 Y 1 A ASP 203 ? OD2 ? A ASP 179 OD2 35 1 Y 1 A ARG 207 ? CG ? A ARG 183 CG 36 1 Y 1 A ARG 207 ? CD ? A ARG 183 CD 37 1 Y 1 A ARG 207 ? NE ? A ARG 183 NE 38 1 Y 1 A ARG 207 ? CZ ? A ARG 183 CZ 39 1 Y 1 A ARG 207 ? NH1 ? A ARG 183 NH1 40 1 Y 1 A ARG 207 ? NH2 ? A ARG 183 NH2 41 1 Y 1 A LYS 212 ? CG ? A LYS 188 CG 42 1 Y 1 A LYS 212 ? CD ? A LYS 188 CD 43 1 Y 1 A LYS 212 ? CE ? A LYS 188 CE 44 1 Y 1 A LYS 212 ? NZ ? A LYS 188 NZ 45 1 Y 1 A LYS 222 ? CG ? A LYS 198 CG 46 1 Y 1 A LYS 222 ? CD ? A LYS 198 CD 47 1 Y 1 A LYS 222 ? CE ? A LYS 198 CE 48 1 Y 1 A LYS 222 ? NZ ? A LYS 198 NZ 49 1 Y 1 A GLN 226 ? CG ? A GLN 202 CG 50 1 Y 1 A GLN 226 ? CD ? A GLN 202 CD 51 1 Y 1 A GLN 226 ? OE1 ? A GLN 202 OE1 52 1 Y 1 A GLN 226 ? NE2 ? A GLN 202 NE2 53 1 Y 1 A THR 262 ? OG1 ? A THR 238 OG1 54 1 Y 1 A THR 262 ? CG2 ? A THR 238 CG2 55 1 Y 1 A LEU 264 ? CG ? A LEU 240 CG 56 1 Y 1 A LEU 264 ? CD1 ? A LEU 240 CD1 57 1 Y 1 A LEU 264 ? CD2 ? A LEU 240 CD2 58 1 Y 1 A ILE 276 ? CG1 ? A ILE 252 CG1 59 1 Y 1 A ILE 276 ? CG2 ? A ILE 252 CG2 60 1 Y 1 A ILE 276 ? CD1 ? A ILE 252 CD1 61 1 Y 1 A GLN 277 ? CG ? A GLN 253 CG 62 1 Y 1 A GLN 277 ? CD ? A GLN 253 CD 63 1 Y 1 A GLN 277 ? OE1 ? A GLN 253 OE1 64 1 Y 1 A GLN 277 ? NE2 ? A GLN 253 NE2 65 1 Y 1 A ARG 282 ? CG ? A ARG 258 CG 66 1 Y 1 A ARG 282 ? CD ? A ARG 258 CD 67 1 Y 1 A ARG 282 ? NE ? A ARG 258 NE 68 1 Y 1 A ARG 282 ? CZ ? A ARG 258 CZ 69 1 Y 1 A ARG 282 ? NH1 ? A ARG 258 NH1 70 1 Y 1 A ARG 282 ? NH2 ? A ARG 258 NH2 71 1 Y 1 A GLN 310 ? CG ? A GLN 286 CG 72 1 Y 1 A GLN 310 ? CD ? A GLN 286 CD 73 1 Y 1 A GLN 310 ? OE1 ? A GLN 286 OE1 74 1 Y 1 A GLN 310 ? NE2 ? A GLN 286 NE2 75 1 Y 1 A PHE 348 ? CG ? A PHE 324 CG 76 1 Y 1 A PHE 348 ? CD1 ? A PHE 324 CD1 77 1 Y 1 A PHE 348 ? CD2 ? A PHE 324 CD2 78 1 Y 1 A PHE 348 ? CE1 ? A PHE 324 CE1 79 1 Y 1 A PHE 348 ? CE2 ? A PHE 324 CE2 80 1 Y 1 A PHE 348 ? CZ ? A PHE 324 CZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 25 ? A GLY 1 2 1 Y 1 A ALA 26 ? A ALA 2 3 1 Y 1 A MSE 27 ? A MSE 3 4 1 Y 1 A ASP 28 ? A ASP 4 5 1 Y 1 A PRO 29 ? A PRO 5 6 1 Y 1 A ARG 30 ? A ARG 6 7 1 Y 1 A LYS 31 ? A LYS 7 8 1 Y 1 A GLY 32 ? A GLY 8 9 1 Y 1 A ILE 72 ? A ILE 48 10 1 Y 1 A ASP 73 ? A ASP 49 11 1 Y 1 A GLU 74 ? A GLU 50 12 1 Y 1 A GLY 75 ? A GLY 51 13 1 Y 1 A GLY 76 ? A GLY 52 14 1 Y 1 A ILE 77 ? A ILE 53 15 1 Y 1 A ILE 78 ? A ILE 54 16 1 Y 1 A PRO 79 ? A PRO 55 17 1 Y 1 A PRO 240 ? A PRO 216 18 1 Y 1 A SER 241 ? A SER 217 19 1 Y 1 A PRO 242 ? A PRO 218 20 1 Y 1 A LEU 243 ? A LEU 219 21 1 Y 1 A LYS 244 ? A LYS 220 22 1 Y 1 A ASN 245 ? A ASN 221 23 1 Y 1 A SER 246 ? A SER 222 24 1 Y 1 A ALA 247 ? A ALA 223 25 1 Y 1 A SER 248 ? A SER 224 26 1 Y 1 A LYS 249 ? A LYS 225 27 1 Y 1 A ARG 250 ? A ARG 226 28 1 Y 1 A LEU 407 ? A LEU 383 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 'CALCIUM ION' CA # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN 1 601 601 ZN ZN A . C 3 CA 1 602 602 CA CA A . #