HEADER TRANSFERASE 10-APR-13 4K30 TITLE STRUCTURE OF THE N-ACETYLTRANSFERASE DOMAIN OF HUMAN N-ACETYLGLUTAMATE TITLE 2 SYNTHASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-ACETYLGLUTAMATE SYNTHASE, MITOCHONDRIAL; COMPND 3 CHAIN: A, B, X, Y; COMPND 4 SYNONYM: AMINO-ACID ACETYLTRANSFERASE, N-ACETYLGLUTAMATE SYNTHASE COMPND 5 LONG FORM, N-ACETYLGLUTAMATE SYNTHASE SHORT FORM, N-ACETYLGLUTAMATE COMPND 6 SYNTHASE CONSERVED DOMAIN FORM; COMPND 7 EC: 2.3.1.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NAGS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS GCN5-RALATED N-ACETYLTRANSFERASE FOLD, SYNTHASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.SHI,G.ZHAO,Z.JIN,N.M.ALLEWELL,M.TUCHMAN REVDAT 3 20-SEP-23 4K30 1 REMARK SEQADV REVDAT 2 15-NOV-17 4K30 1 AUTHOR REMARK REVDAT 1 14-AUG-13 4K30 0 JRNL AUTH G.ZHAO,Z.JIN,N.M.ALLEWELL,M.TUCHMAN,D.SHI JRNL TITL CRYSTAL STRUCTURE OF THE N-ACETYLTRANSFERASE DOMAIN OF HUMAN JRNL TITL 2 N-ACETYL-L-GLUTAMATE SYNTHASE IN COMPLEX WITH JRNL TITL 3 N-ACETYL-L-GLUTAMATE PROVIDES INSIGHTS INTO ITS CATALYTIC JRNL TITL 4 AND REGULATORY MECHANISMS. JRNL REF PLOS ONE V. 8 70369 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23894642 JRNL DOI 10.1371/JOURNAL.PONE.0070369 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 44051 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.530 REMARK 3 FREE R VALUE TEST SET COUNT : 1994 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.4645 - 5.0639 0.99 3224 158 0.1938 0.2555 REMARK 3 2 5.0639 - 4.0208 1.00 3088 142 0.1497 0.1931 REMARK 3 3 4.0208 - 3.5129 1.00 3044 146 0.1627 0.2240 REMARK 3 4 3.5129 - 3.1919 1.00 3022 145 0.1762 0.2516 REMARK 3 5 3.1919 - 2.9632 1.00 3010 142 0.1974 0.2518 REMARK 3 6 2.9632 - 2.7886 1.00 2991 147 0.2057 0.2367 REMARK 3 7 2.7886 - 2.6489 1.00 3013 132 0.1979 0.2637 REMARK 3 8 2.6489 - 2.5337 1.00 2957 144 0.1992 0.2920 REMARK 3 9 2.5337 - 2.4361 1.00 2986 145 0.2077 0.2574 REMARK 3 10 2.4361 - 2.3521 1.00 2970 140 0.2021 0.2541 REMARK 3 11 2.3521 - 2.2785 1.00 2962 135 0.2111 0.3172 REMARK 3 12 2.2785 - 2.2134 1.00 2983 141 0.2245 0.2965 REMARK 3 13 2.2134 - 2.1552 1.00 2940 151 0.2287 0.2783 REMARK 3 14 2.1552 - 2.1026 0.97 2867 126 0.2525 0.3151 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5149 REMARK 3 ANGLE : 1.103 6955 REMARK 3 CHIRALITY : 0.077 715 REMARK 3 PLANARITY : 0.004 893 REMARK 3 DIHEDRAL : 12.874 1873 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESID 375:469 REMARK 3 ORIGIN FOR THE GROUP (A): 49.1075 123.4552 115.4275 REMARK 3 T TENSOR REMARK 3 T11: 0.2428 T22: 0.2644 REMARK 3 T33: 0.2111 T12: 0.0058 REMARK 3 T13: 0.0077 T23: 0.0223 REMARK 3 L TENSOR REMARK 3 L11: 3.3566 L22: 4.2032 REMARK 3 L33: 3.6828 L12: 0.2158 REMARK 3 L13: 0.2449 L23: -0.3368 REMARK 3 S TENSOR REMARK 3 S11: -0.0457 S12: 0.1236 S13: 0.0889 REMARK 3 S21: 0.1081 S22: -0.1023 S23: -0.3853 REMARK 3 S31: -0.0518 S32: 0.2979 S33: 0.1699 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESID 470:527 REMARK 3 ORIGIN FOR THE GROUP (A): 33.3580 125.9875 117.3562 REMARK 3 T TENSOR REMARK 3 T11: 0.2325 T22: 0.2905 REMARK 3 T33: 0.2300 T12: 0.0018 REMARK 3 T13: -0.0224 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 4.3545 L22: 6.6246 REMARK 3 L33: 4.1893 L12: -3.0175 REMARK 3 L13: 0.0277 L23: 0.1732 REMARK 3 S TENSOR REMARK 3 S11: 0.0492 S12: 0.0124 S13: -0.2262 REMARK 3 S21: 0.1219 S22: -0.1121 S23: 0.4844 REMARK 3 S31: -0.0111 S32: -0.6176 S33: 0.0448 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN B AND RESID 376:469 REMARK 3 ORIGIN FOR THE GROUP (A): 12.0100 133.0743 139.1689 REMARK 3 T TENSOR REMARK 3 T11: 0.4326 T22: 0.7203 REMARK 3 T33: 0.3973 T12: 0.0115 REMARK 3 T13: 0.0658 T23: -0.0573 REMARK 3 L TENSOR REMARK 3 L11: 5.1205 L22: 4.3472 REMARK 3 L33: 7.1224 L12: 0.1514 REMARK 3 L13: -0.4308 L23: -0.5841 REMARK 3 S TENSOR REMARK 3 S11: 0.1316 S12: -0.9656 S13: 0.0659 REMARK 3 S21: 0.4728 S22: 0.1566 S23: 0.1823 REMARK 3 S31: 0.2328 S32: -0.5321 S33: -0.2205 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND RESID 470:527 REMARK 3 ORIGIN FOR THE GROUP (A): 23.1702 136.1023 128.1028 REMARK 3 T TENSOR REMARK 3 T11: 0.3304 T22: 0.3940 REMARK 3 T33: 0.2764 T12: 0.0364 REMARK 3 T13: 0.0344 T23: -0.0393 REMARK 3 L TENSOR REMARK 3 L11: 4.5689 L22: 6.7364 REMARK 3 L33: 6.6934 L12: -1.1543 REMARK 3 L13: -1.5047 L23: 2.3023 REMARK 3 S TENSOR REMARK 3 S11: 0.2664 S12: -0.4848 S13: 0.4761 REMARK 3 S21: 0.0308 S22: -0.0690 S23: -0.1172 REMARK 3 S31: -0.4008 S32: 0.1468 S33: -0.1519 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN X AND RESID 375:469 REMARK 3 ORIGIN FOR THE GROUP (A): 45.2192 100.4168 129.1558 REMARK 3 T TENSOR REMARK 3 T11: 0.3287 T22: 0.2304 REMARK 3 T33: 0.2605 T12: 0.0626 REMARK 3 T13: 0.0907 T23: 0.0795 REMARK 3 L TENSOR REMARK 3 L11: 3.4117 L22: 5.9821 REMARK 3 L33: 3.7553 L12: 1.1871 REMARK 3 L13: -0.5394 L23: -1.6375 REMARK 3 S TENSOR REMARK 3 S11: -0.1519 S12: 0.1219 S13: 0.1661 REMARK 3 S21: 0.2835 S22: 0.0524 S23: 0.2734 REMARK 3 S31: -0.0325 S32: -0.0158 S33: 0.1316 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN X AND RESID 470:527 REMARK 3 ORIGIN FOR THE GROUP (A): 41.5553 87.4441 137.5778 REMARK 3 T TENSOR REMARK 3 T11: 0.5149 T22: 0.3725 REMARK 3 T33: 0.3197 T12: 0.1392 REMARK 3 T13: 0.1198 T23: 0.1419 REMARK 3 L TENSOR REMARK 3 L11: 3.7149 L22: 5.8011 REMARK 3 L33: 3.0584 L12: 1.9756 REMARK 3 L13: 0.1333 L23: -1.3465 REMARK 3 S TENSOR REMARK 3 S11: 0.0003 S12: -0.2656 S13: -0.1456 REMARK 3 S21: 0.5239 S22: -0.0247 S23: -0.0287 REMARK 3 S31: -0.0969 S32: -0.0139 S33: 0.0388 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN Y AND RESID 377:469 REMARK 3 ORIGIN FOR THE GROUP (A): 18.2942 105.5498 100.6638 REMARK 3 T TENSOR REMARK 3 T11: 0.6551 T22: 0.5898 REMARK 3 T33: 1.2961 T12: -0.0212 REMARK 3 T13: 0.0733 T23: -0.1252 REMARK 3 L TENSOR REMARK 3 L11: 4.0286 L22: 6.6544 REMARK 3 L33: 5.3521 L12: -0.4872 REMARK 3 L13: -0.4459 L23: 0.6376 REMARK 3 S TENSOR REMARK 3 S11: -0.2944 S12: 0.6815 S13: -1.6814 REMARK 3 S21: -0.6270 S22: 0.6229 S23: -1.5670 REMARK 3 S31: 0.3177 S32: 0.4265 S33: -0.2448 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN Y AND RESID 470:525 REMARK 3 ORIGIN FOR THE GROUP (A): 5.2567 109.7057 109.3771 REMARK 3 T TENSOR REMARK 3 T11: 0.5482 T22: 0.4871 REMARK 3 T33: 0.6793 T12: -0.0913 REMARK 3 T13: -0.0636 T23: 0.1283 REMARK 3 L TENSOR REMARK 3 L11: 8.7678 L22: 8.8766 REMARK 3 L33: 7.6001 L12: -0.9395 REMARK 3 L13: 1.0776 L23: 1.4026 REMARK 3 S TENSOR REMARK 3 S11: -0.1037 S12: -0.5088 S13: -0.3247 REMARK 3 S21: 0.2270 S22: 0.4259 S23: -0.6795 REMARK 3 S31: 0.3980 S32: 0.2768 S33: -0.2786 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4K30 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000078826. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44139 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.60 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 9.70 REMARK 200 R MERGE FOR SHELL (I) : 0.90100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3S6H REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BIS-TRIS, PH 6.5, 35% PEG 3350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.87100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 58.07050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 58.07050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 82.30650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 58.07050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 58.07050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.43550 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 58.07050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.07050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 82.30650 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 58.07050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.07050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 27.43550 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 54.87100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 116.14100 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 116.14100 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 274.35500 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: Y REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 -116.14100 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 116.14100 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 219.48400 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 729 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 528 REMARK 465 ALA A 529 REMARK 465 SER A 530 REMARK 465 ASP A 531 REMARK 465 PRO A 532 REMARK 465 GLY A 533 REMARK 465 SER A 534 REMARK 465 SER B 375 REMARK 465 PRO B 528 REMARK 465 ALA B 529 REMARK 465 SER B 530 REMARK 465 ASP B 531 REMARK 465 PRO B 532 REMARK 465 GLY B 533 REMARK 465 SER B 534 REMARK 465 PRO X 528 REMARK 465 ALA X 529 REMARK 465 SER X 530 REMARK 465 ASP X 531 REMARK 465 PRO X 532 REMARK 465 GLY X 533 REMARK 465 SER X 534 REMARK 465 SER Y 375 REMARK 465 HIS Y 376 REMARK 465 HIS Y 526 REMARK 465 LYS Y 527 REMARK 465 PRO Y 528 REMARK 465 ALA Y 529 REMARK 465 SER Y 530 REMARK 465 ASP Y 531 REMARK 465 PRO Y 532 REMARK 465 GLY Y 533 REMARK 465 SER Y 534 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH X 742 O HOH X 751 1.81 REMARK 500 O HOH Y 710 O HOH Y 712 1.85 REMARK 500 O HOH A 809 O HOH A 813 1.87 REMARK 500 OG SER B 450 O HOH B 725 1.91 REMARK 500 NE ARG Y 451 O HOH Y 706 1.95 REMARK 500 O HOH X 747 O HOH X 760 1.95 REMARK 500 O HOH A 785 O HOH A 790 2.04 REMARK 500 O HOH A 766 O HOH A 771 2.07 REMARK 500 O HOH A 805 O HOH A 807 2.10 REMARK 500 OD1 ASN B 495 O HOH B 751 2.11 REMARK 500 O GLU A 422 O HOH A 778 2.11 REMARK 500 O HOH A 775 O HOH A 776 2.12 REMARK 500 O VAL X 477 O HOH X 746 2.13 REMARK 500 O HOH A 785 O HOH A 803 2.16 REMARK 500 O HOH A 790 O HOH A 803 2.18 REMARK 500 OE1 NLG X 600 O HOH X 718 2.18 REMARK 500 O HOH A 811 O HOH A 815 2.18 REMARK 500 N ASP X 507 O HOH X 762 2.19 REMARK 500 O LEU X 436 O HOH X 732 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 376 -169.82 -110.83 REMARK 500 GLU A 422 -69.78 -23.27 REMARK 500 HIS B 416 -64.87 -101.68 REMARK 500 ASN X 495 -113.06 -110.35 REMARK 500 LYS X 496 -88.37 -90.33 REMARK 500 HIS X 526 72.76 66.18 REMARK 500 HIS Y 416 -53.71 -124.35 REMARK 500 ASN Y 495 -168.55 -118.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY X 423 TYR X 424 -139.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NLG A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NLG B 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NLG X 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NLG Y 600 DBREF 4K30 A 377 534 UNP Q8N159 NAGS_HUMAN 377 534 DBREF 4K30 B 377 534 UNP Q8N159 NAGS_HUMAN 377 534 DBREF 4K30 X 377 534 UNP Q8N159 NAGS_HUMAN 377 534 DBREF 4K30 Y 377 534 UNP Q8N159 NAGS_HUMAN 377 534 SEQADV 4K30 SER A 375 UNP Q8N159 EXPRESSION TAG SEQADV 4K30 HIS A 376 UNP Q8N159 EXPRESSION TAG SEQADV 4K30 SER B 375 UNP Q8N159 EXPRESSION TAG SEQADV 4K30 HIS B 376 UNP Q8N159 EXPRESSION TAG SEQADV 4K30 SER X 375 UNP Q8N159 EXPRESSION TAG SEQADV 4K30 HIS X 376 UNP Q8N159 EXPRESSION TAG SEQADV 4K30 SER Y 375 UNP Q8N159 EXPRESSION TAG SEQADV 4K30 HIS Y 376 UNP Q8N159 EXPRESSION TAG SEQRES 1 A 160 SER HIS MET LEU ARG VAL ARG SER LEU ASP LYS LEU ASP SEQRES 2 A 160 GLN GLY ARG LEU VAL ASP LEU VAL ASN ALA SER PHE GLY SEQRES 3 A 160 LYS LYS LEU ARG ASP ASP TYR LEU ALA SER LEU ARG PRO SEQRES 4 A 160 ARG LEU HIS SER ILE TYR VAL SER GLU GLY TYR ASN ALA SEQRES 5 A 160 ALA ALA ILE LEU THR MET GLU PRO VAL LEU GLY GLY THR SEQRES 6 A 160 PRO TYR LEU ASP LYS PHE VAL VAL SER SER SER ARG GLN SEQRES 7 A 160 GLY GLN GLY SER GLY GLN MET LEU TRP GLU CYS LEU ARG SEQRES 8 A 160 ARG ASP LEU GLN THR LEU PHE TRP ARG SER ARG VAL THR SEQRES 9 A 160 ASN PRO ILE ASN PRO TRP TYR PHE LYS HIS SER ASP GLY SEQRES 10 A 160 SER PHE SER ASN LYS GLN TRP ILE PHE PHE TRP PHE GLY SEQRES 11 A 160 LEU ALA ASP ILE ARG ASP SER TYR GLU LEU VAL ASN HIS SEQRES 12 A 160 ALA LYS GLY LEU PRO ASP SER PHE HIS LYS PRO ALA SER SEQRES 13 A 160 ASP PRO GLY SER SEQRES 1 B 160 SER HIS MET LEU ARG VAL ARG SER LEU ASP LYS LEU ASP SEQRES 2 B 160 GLN GLY ARG LEU VAL ASP LEU VAL ASN ALA SER PHE GLY SEQRES 3 B 160 LYS LYS LEU ARG ASP ASP TYR LEU ALA SER LEU ARG PRO SEQRES 4 B 160 ARG LEU HIS SER ILE TYR VAL SER GLU GLY TYR ASN ALA SEQRES 5 B 160 ALA ALA ILE LEU THR MET GLU PRO VAL LEU GLY GLY THR SEQRES 6 B 160 PRO TYR LEU ASP LYS PHE VAL VAL SER SER SER ARG GLN SEQRES 7 B 160 GLY GLN GLY SER GLY GLN MET LEU TRP GLU CYS LEU ARG SEQRES 8 B 160 ARG ASP LEU GLN THR LEU PHE TRP ARG SER ARG VAL THR SEQRES 9 B 160 ASN PRO ILE ASN PRO TRP TYR PHE LYS HIS SER ASP GLY SEQRES 10 B 160 SER PHE SER ASN LYS GLN TRP ILE PHE PHE TRP PHE GLY SEQRES 11 B 160 LEU ALA ASP ILE ARG ASP SER TYR GLU LEU VAL ASN HIS SEQRES 12 B 160 ALA LYS GLY LEU PRO ASP SER PHE HIS LYS PRO ALA SER SEQRES 13 B 160 ASP PRO GLY SER SEQRES 1 X 160 SER HIS MET LEU ARG VAL ARG SER LEU ASP LYS LEU ASP SEQRES 2 X 160 GLN GLY ARG LEU VAL ASP LEU VAL ASN ALA SER PHE GLY SEQRES 3 X 160 LYS LYS LEU ARG ASP ASP TYR LEU ALA SER LEU ARG PRO SEQRES 4 X 160 ARG LEU HIS SER ILE TYR VAL SER GLU GLY TYR ASN ALA SEQRES 5 X 160 ALA ALA ILE LEU THR MET GLU PRO VAL LEU GLY GLY THR SEQRES 6 X 160 PRO TYR LEU ASP LYS PHE VAL VAL SER SER SER ARG GLN SEQRES 7 X 160 GLY GLN GLY SER GLY GLN MET LEU TRP GLU CYS LEU ARG SEQRES 8 X 160 ARG ASP LEU GLN THR LEU PHE TRP ARG SER ARG VAL THR SEQRES 9 X 160 ASN PRO ILE ASN PRO TRP TYR PHE LYS HIS SER ASP GLY SEQRES 10 X 160 SER PHE SER ASN LYS GLN TRP ILE PHE PHE TRP PHE GLY SEQRES 11 X 160 LEU ALA ASP ILE ARG ASP SER TYR GLU LEU VAL ASN HIS SEQRES 12 X 160 ALA LYS GLY LEU PRO ASP SER PHE HIS LYS PRO ALA SER SEQRES 13 X 160 ASP PRO GLY SER SEQRES 1 Y 160 SER HIS MET LEU ARG VAL ARG SER LEU ASP LYS LEU ASP SEQRES 2 Y 160 GLN GLY ARG LEU VAL ASP LEU VAL ASN ALA SER PHE GLY SEQRES 3 Y 160 LYS LYS LEU ARG ASP ASP TYR LEU ALA SER LEU ARG PRO SEQRES 4 Y 160 ARG LEU HIS SER ILE TYR VAL SER GLU GLY TYR ASN ALA SEQRES 5 Y 160 ALA ALA ILE LEU THR MET GLU PRO VAL LEU GLY GLY THR SEQRES 6 Y 160 PRO TYR LEU ASP LYS PHE VAL VAL SER SER SER ARG GLN SEQRES 7 Y 160 GLY GLN GLY SER GLY GLN MET LEU TRP GLU CYS LEU ARG SEQRES 8 Y 160 ARG ASP LEU GLN THR LEU PHE TRP ARG SER ARG VAL THR SEQRES 9 Y 160 ASN PRO ILE ASN PRO TRP TYR PHE LYS HIS SER ASP GLY SEQRES 10 Y 160 SER PHE SER ASN LYS GLN TRP ILE PHE PHE TRP PHE GLY SEQRES 11 Y 160 LEU ALA ASP ILE ARG ASP SER TYR GLU LEU VAL ASN HIS SEQRES 12 Y 160 ALA LYS GLY LEU PRO ASP SER PHE HIS LYS PRO ALA SER SEQRES 13 Y 160 ASP PRO GLY SER HET NLG A 600 13 HET NLG B 600 13 HET NLG X 600 13 HET NLG Y 600 13 HETNAM NLG N-ACETYL-L-GLUTAMATE FORMUL 5 NLG 4(C7 H11 N O5) FORMUL 9 HOH *266(H2 O) HELIX 1 1 SER A 382 LEU A 386 5 5 HELIX 2 2 ASP A 387 GLY A 400 1 14 HELIX 3 3 ASP A 406 ARG A 412 1 7 HELIX 4 4 SER A 450 LEU A 468 1 19 HELIX 5 5 ILE A 481 HIS A 488 1 8 HELIX 6 6 ASP A 507 ARG A 509 5 3 HELIX 7 7 ASP A 510 GLY A 520 1 11 HELIX 8 8 SER B 382 LEU B 386 5 5 HELIX 9 9 ASP B 387 GLY B 400 1 14 HELIX 10 10 ASP B 406 ARG B 412 1 7 HELIX 11 11 SER B 450 LEU B 468 1 19 HELIX 12 12 ILE B 481 HIS B 488 1 8 HELIX 13 13 ARG B 509 LEU B 521 1 13 HELIX 14 14 SER X 382 LEU X 386 5 5 HELIX 15 15 ASP X 387 GLY X 400 1 14 HELIX 16 16 ASP X 406 ARG X 412 1 7 HELIX 17 17 SER X 450 LEU X 468 1 19 HELIX 18 18 ILE X 481 HIS X 488 1 8 HELIX 19 19 ASP X 507 ARG X 509 5 3 HELIX 20 20 ASP X 510 LEU X 521 1 12 HELIX 21 21 SER Y 382 LEU Y 386 5 5 HELIX 22 22 ASP Y 387 PHE Y 399 1 13 HELIX 23 23 ASP Y 406 ARG Y 412 1 7 HELIX 24 24 GLU Y 422 TYR Y 424 5 3 HELIX 25 25 GLN Y 452 LEU Y 468 1 17 HELIX 26 26 ILE Y 481 HIS Y 488 1 8 HELIX 27 27 ASP Y 507 ARG Y 509 5 3 HELIX 28 28 ASP Y 510 LEU Y 521 1 12 SHEET 1 A 4 LEU A 378 VAL A 380 0 SHEET 2 A 4 LEU A 415 VAL A 420 -1 O VAL A 420 N LEU A 378 SHEET 3 A 4 ALA A 426 GLU A 433 -1 O LEU A 430 N HIS A 416 SHEET 4 A 4 THR A 439 VAL A 447 -1 O LYS A 444 N ILE A 429 SHEET 1 B 6 LEU A 471 ARG A 476 0 SHEET 2 B 6 TRP A 498 PHE A 503 -1 O ILE A 499 N SER A 475 SHEET 3 B 6 GLY A 491 SER A 494 -1 N PHE A 493 O PHE A 500 SHEET 4 B 6 GLY B 491 SER B 494 -1 O SER B 492 N SER A 492 SHEET 5 B 6 TRP B 498 PHE B 503 -1 O PHE B 500 N PHE B 493 SHEET 6 B 6 LEU B 471 ARG B 476 -1 N SER B 475 O ILE B 499 SHEET 1 C 4 MET B 377 VAL B 380 0 SHEET 2 C 4 LEU B 415 SER B 421 -1 O VAL B 420 N LEU B 378 SHEET 3 C 4 ALA B 426 GLU B 433 -1 O LEU B 430 N HIS B 416 SHEET 4 C 4 THR B 439 VAL B 447 -1 O LYS B 444 N ILE B 429 SHEET 1 D 4 MET X 377 VAL X 380 0 SHEET 2 D 4 LEU X 415 SER X 421 -1 O ILE X 418 N VAL X 380 SHEET 3 D 4 ALA X 426 GLU X 433 -1 O LEU X 430 N HIS X 416 SHEET 4 D 4 THR X 439 VAL X 447 -1 O TYR X 441 N THR X 431 SHEET 1 E 3 LEU X 471 ARG X 476 0 SHEET 2 E 3 TRP X 498 PHE X 503 -1 O ILE X 499 N SER X 475 SHEET 3 E 3 GLY X 491 SER X 494 -1 N PHE X 493 O PHE X 500 SHEET 1 F 4 LEU Y 378 VAL Y 380 0 SHEET 2 F 4 LEU Y 415 VAL Y 420 -1 O VAL Y 420 N LEU Y 378 SHEET 3 F 4 ALA Y 426 GLU Y 433 -1 O LEU Y 430 N SER Y 417 SHEET 4 F 4 THR Y 439 VAL Y 447 -1 O VAL Y 446 N ALA Y 427 SHEET 1 G 3 LEU Y 471 ARG Y 476 0 SHEET 2 G 3 TRP Y 498 PHE Y 503 -1 O PHE Y 501 N TRP Y 473 SHEET 3 G 3 GLY Y 491 SER Y 494 -1 N PHE Y 493 O PHE Y 500 SITE 1 AC1 12 PHE A 399 LYS A 401 LEU A 442 ASP A 443 SITE 2 AC1 12 LYS A 444 PHE A 445 ARG A 474 ARG A 476 SITE 3 AC1 12 ASN A 479 PHE A 525 HOH A 707 HOH A 816 SITE 1 AC2 10 PHE B 399 LYS B 401 LEU B 442 ASP B 443 SITE 2 AC2 10 LYS B 444 PHE B 445 ARG B 474 ARG B 476 SITE 3 AC2 10 ASN B 479 HOH B 744 SITE 1 AC3 11 PHE X 399 LYS X 401 LEU X 442 ASP X 443 SITE 2 AC3 11 LYS X 444 PHE X 445 ARG X 474 ARG X 476 SITE 3 AC3 11 PHE X 525 HOH X 708 HOH X 718 SITE 1 AC4 10 PHE Y 399 LEU Y 442 ASP Y 443 LYS Y 444 SITE 2 AC4 10 PHE Y 445 ARG Y 474 ARG Y 476 ASN Y 479 SITE 3 AC4 10 TRP Y 498 PHE Y 525 CRYST1 116.141 116.141 109.742 90.00 90.00 90.00 P 43 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008610 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008610 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009112 0.00000