HEADER MEMBRANE PROTEIN 10-APR-13 4K3B TITLE THE CRYSTAL STRUCTURE OF BAMA FROM NEISSERIA GONORRHOEAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER MEMBRANE PROTEIN ASSEMBLY FACTOR BAMA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA GONORRHOEAE; SOURCE 3 ORGANISM_TAXID: 242231; SOURCE 4 STRAIN: FA 1090; SOURCE 5 GENE: BAMA, NGO1801; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA-BARREL MEMBRANE PROTEIN, INSERTASE, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.NOINAJ,P.LUKACIK,H.CHANG,N.EASLEY,S.K.BUCHANAN REVDAT 4 28-FEB-24 4K3B 1 REMARK REVDAT 3 02-OCT-13 4K3B 1 JRNL REVDAT 2 11-SEP-13 4K3B 1 JRNL SHEET REVDAT 1 04-SEP-13 4K3B 0 JRNL AUTH N.NOINAJ,A.J.KUSZAK,J.C.GUMBART,P.LUKACIK,H.CHANG, JRNL AUTH 2 N.C.EASLEY,T.LITHGOW,S.K.BUCHANAN JRNL TITL STRUCTURAL INSIGHT INTO THE BIOGENESIS OF BETA-BARREL JRNL TITL 2 MEMBRANE PROTEINS. JRNL REF NATURE V. 501 385 2013 JRNL REFN ISSN 0028-0836 JRNL PMID 23995689 JRNL DOI 10.1038/NATURE12521 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1103) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 25674 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.650 REMARK 3 FREE R VALUE TEST SET COUNT : 1964 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 14.9992 - 7.4129 0.99 1786 148 0.2019 0.2295 REMARK 3 2 7.4129 - 6.0070 1.00 1722 143 0.2382 0.2833 REMARK 3 3 6.0070 - 5.2856 1.00 1736 143 0.2129 0.2569 REMARK 3 4 5.2856 - 4.8199 1.00 1700 142 0.1877 0.2661 REMARK 3 5 4.8199 - 4.4843 1.00 1687 140 0.1792 0.2209 REMARK 3 6 4.4843 - 4.2262 1.00 1683 139 0.1916 0.2442 REMARK 3 7 4.2262 - 4.0188 1.00 1694 140 0.2243 0.2618 REMARK 3 8 4.0188 - 3.8469 1.00 1675 138 0.2493 0.3154 REMARK 3 9 3.8469 - 3.7012 1.00 1674 139 0.2571 0.3235 REMARK 3 10 3.7012 - 3.5752 1.00 1680 139 0.2768 0.3402 REMARK 3 11 3.5752 - 3.4648 1.00 1650 137 0.2928 0.3283 REMARK 3 12 3.4648 - 3.3669 1.00 1675 139 0.3062 0.3679 REMARK 3 13 3.3669 - 3.2792 1.00 1673 139 0.3348 0.3777 REMARK 3 14 3.2792 - 3.2000 1.00 1675 138 0.3703 0.3951 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.530 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 5885 REMARK 3 ANGLE : 2.042 7999 REMARK 3 CHIRALITY : 0.139 889 REMARK 3 PLANARITY : 0.009 1048 REMARK 3 DIHEDRAL : 20.595 2051 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 21 THROUGH 283 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3522 -45.0053 -2.5746 REMARK 3 T TENSOR REMARK 3 T11: 0.7999 T22: 0.6843 REMARK 3 T33: 1.0766 T12: 0.0027 REMARK 3 T13: 0.0215 T23: -0.2845 REMARK 3 L TENSOR REMARK 3 L11: 0.9668 L22: 3.3019 REMARK 3 L33: 0.7632 L12: 1.1578 REMARK 3 L13: -0.2490 L23: -0.5512 REMARK 3 S TENSOR REMARK 3 S11: 0.2124 S12: 0.1034 S13: -0.0918 REMARK 3 S21: 0.7621 S22: -0.1801 S23: 0.3826 REMARK 3 S31: -0.1289 S32: 0.0246 S33: -0.0621 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 284 THROUGH 414 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.7544 -26.7775 -32.3541 REMARK 3 T TENSOR REMARK 3 T11: 1.5722 T22: 1.0438 REMARK 3 T33: 0.8014 T12: -0.0476 REMARK 3 T13: -0.0351 T23: -0.1158 REMARK 3 L TENSOR REMARK 3 L11: 1.6662 L22: 3.7602 REMARK 3 L33: 1.0882 L12: 0.3240 REMARK 3 L13: 0.0028 L23: -0.5904 REMARK 3 S TENSOR REMARK 3 S11: 0.1780 S12: 0.5057 S13: -0.8190 REMARK 3 S21: -0.6659 S22: 0.1717 S23: 0.7179 REMARK 3 S31: 0.1503 S32: 0.1345 S33: -0.1308 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 415 THROUGH 792 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.8677 11.7795 -24.2240 REMARK 3 T TENSOR REMARK 3 T11: 0.7617 T22: 0.5686 REMARK 3 T33: 0.5970 T12: -0.0453 REMARK 3 T13: 0.1467 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 2.4271 L22: 2.5593 REMARK 3 L33: 3.4800 L12: 0.0555 REMARK 3 L13: -0.7577 L23: -0.3971 REMARK 3 S TENSOR REMARK 3 S11: -0.1136 S12: -0.0114 S13: -0.0275 REMARK 3 S21: -0.8218 S22: 0.0027 S23: -0.3314 REMARK 3 S31: 0.2668 S32: 0.0668 S33: 0.0220 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4K3B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000078837. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25674 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.14000 REMARK 200 FOR THE DATA SET : 17.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.95700 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER, PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NACL, 0.1 M K-PHOSPHATE 7.0, 32% REMARK 280 PEG 300, AND 200 MM NA-MALONATE, PH 7.5, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 95.30900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 95.30900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 29.76250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 135.10300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 29.76250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 135.10300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 95.30900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 29.76250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 135.10300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 95.30900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 29.76250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 135.10300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 LEU A 3 REMARK 465 LYS A 4 REMARK 465 GLN A 5 REMARK 465 ILE A 6 REMARK 465 ALA A 7 REMARK 465 SER A 8 REMARK 465 ALA A 9 REMARK 465 LEU A 10 REMARK 465 MET A 11 REMARK 465 MET A 12 REMARK 465 LEU A 13 REMARK 465 GLY A 14 REMARK 465 ILE A 15 REMARK 465 SER A 16 REMARK 465 PRO A 17 REMARK 465 LEU A 18 REMARK 465 ALA A 19 REMARK 465 PHE A 20 REMARK 465 THR A 743 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 34 CG CD OE1 NE2 REMARK 470 GLU A 37 CG CD OE1 OE2 REMARK 470 TYR A 44 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 48 CG CD CE NZ REMARK 470 LYS A 63 CG CD CE NZ REMARK 470 LYS A 102 CG CD CE NZ REMARK 470 LYS A 111 CG CD CE NZ REMARK 470 LYS A 156 CG CD CE NZ REMARK 470 LEU A 157 CG CD1 CD2 REMARK 470 ARG A 161 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 163 CG OD1 OD2 REMARK 470 GLU A 182 CG CD OE1 OE2 REMARK 470 GLU A 248 CG CD OE1 OE2 REMARK 470 ASP A 249 CG OD1 OD2 REMARK 470 LYS A 250 CG CD CE NZ REMARK 470 GLU A 261 CG CD OE1 OE2 REMARK 470 ARG A 266 CG CD NE CZ NH1 NH2 REMARK 470 TRP A 267 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 267 CZ3 CH2 REMARK 470 LYS A 269 CG CD CE NZ REMARK 470 VAL A 270 CG1 CG2 REMARK 470 SER A 271 OG REMARK 470 ILE A 272 CG1 CG2 CD1 REMARK 470 GLU A 273 CG CD OE1 OE2 REMARK 470 ASP A 275 CG OD1 OD2 REMARK 470 THR A 276 OG1 CG2 REMARK 470 ASN A 277 CG OD1 ND2 REMARK 470 GLU A 278 CG CD OE1 OE2 REMARK 470 VAL A 279 CG1 CG2 REMARK 470 LYS A 281 CG CD CE NZ REMARK 470 GLU A 283 CG CD OE1 OE2 REMARK 470 LEU A 284 CG CD1 CD2 REMARK 470 GLU A 285 CG CD OE1 OE2 REMARK 470 LYS A 286 CG CD CE NZ REMARK 470 LEU A 288 CG CD1 CD2 REMARK 470 THR A 289 OG1 CG2 REMARK 470 MET A 290 CG SD CE REMARK 470 LYS A 291 CG CD CE NZ REMARK 470 ARG A 311 CG CD NE CZ NH1 NH2 REMARK 470 THR A 332 OG1 CG2 REMARK 470 LYS A 333 CG CD CE NZ REMARK 470 ARG A 345 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 346 CG CD CE NZ REMARK 470 ASN A 350 CG OD1 ND2 REMARK 470 ASN A 357 CG OD1 ND2 REMARK 470 ARG A 361 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 363 CG CD OE1 OE2 REMARK 470 ARG A 370 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 386 CG CD CE NZ REMARK 470 ASN A 397 CG OD1 ND2 REMARK 470 LYS A 411 CG CD CE NZ REMARK 470 ARG A 421 CG CD NE CZ NH1 NH2 REMARK 470 SER A 422 OG REMARK 470 LYS A 464 CG CD CE NZ REMARK 470 LYS A 504 CG CD CE NZ REMARK 470 THR A 508 CG2 REMARK 470 ASN A 542 CG OD1 ND2 REMARK 470 LYS A 543 CG CD CE NZ REMARK 470 LYS A 623 CG CD CE NZ REMARK 470 ARG A 641 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 673 CG OD1 OD2 REMARK 470 GLU A 674 CG CD OE1 OE2 REMARK 470 TYR A 675 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 677 CG CD OE1 OE2 REMARK 470 LYS A 701 CG CD CE NZ REMARK 470 ASP A 702 CG OD1 OD2 REMARK 470 ARG A 721 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 727 CG CD OE1 OE2 REMARK 470 ASN A 728 CG OD1 ND2 REMARK 470 ASN A 730 CG OD1 ND2 REMARK 470 LYS A 732 CG CD CE NZ REMARK 470 TYR A 735 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 HIS A 740 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 741 CG CD CE NZ REMARK 470 PHE A 744 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 783 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 41 N ASN A 43 1.67 REMARK 500 NH1 ARG A 497 CE2 TYR A 541 1.71 REMARK 500 NZ LYS A 145 OG SER A 173 1.80 REMARK 500 O PRO A 38 N VAL A 41 1.85 REMARK 500 O VAL A 41 N TYR A 44 1.86 REMARK 500 OG1 THR A 199 OG SER A 210 2.04 REMARK 500 OE2 GLU A 368 CD2 LEU A 392 2.13 REMARK 500 OD2 ASP A 488 NH2 ARG A 516 2.14 REMARK 500 NH1 ARG A 497 CD2 TYR A 541 2.15 REMARK 500 OD2 ASP A 495 NZ LYS A 498 2.15 REMARK 500 O GLU A 200 OD2 ASP A 211 2.16 REMARK 500 NE2 GLN A 230 O TYR A 234 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 38 C - N - CD ANGL. DEV. = 12.8 DEGREES REMARK 500 LEU A 198 N - CA - C ANGL. DEV. = -19.8 DEGREES REMARK 500 ALA A 315 N - CA - C ANGL. DEV. = -21.6 DEGREES REMARK 500 PRO A 328 C - N - CA ANGL. DEV. = 12.1 DEGREES REMARK 500 PRO A 496 C - N - CA ANGL. DEV. = 12.2 DEGREES REMARK 500 PRO A 620 C - N - CA ANGL. DEV. = 9.7 DEGREES REMARK 500 PRO A 761 C - N - CA ANGL. DEV. = -15.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 22 -163.90 -114.65 REMARK 500 GLN A 26 74.48 -104.52 REMARK 500 ASP A 27 138.04 99.24 REMARK 500 GLN A 34 83.89 158.14 REMARK 500 THR A 36 8.48 177.72 REMARK 500 GLU A 37 143.79 70.35 REMARK 500 SER A 39 -31.24 -39.07 REMARK 500 VAL A 41 -72.62 -116.56 REMARK 500 PHE A 42 -8.41 -26.04 REMARK 500 ASN A 54 -82.63 -121.65 REMARK 500 ASP A 55 -61.07 -135.86 REMARK 500 THR A 68 -15.08 66.43 REMARK 500 GLU A 89 -137.70 55.09 REMARK 500 ARG A 90 140.82 -177.70 REMARK 500 LYS A 102 -72.49 -114.39 REMARK 500 PHE A 116 -71.07 -75.45 REMARK 500 LEU A 118 70.43 62.97 REMARK 500 SER A 121 -33.23 67.50 REMARK 500 GLN A 122 24.08 33.30 REMARK 500 TYR A 123 77.91 42.58 REMARK 500 LYS A 145 107.15 -51.03 REMARK 500 LEU A 157 -79.90 -101.73 REMARK 500 ALA A 158 160.28 174.24 REMARK 500 LYS A 172 -121.47 64.51 REMARK 500 THR A 177 -61.40 -95.04 REMARK 500 ASN A 184 -64.71 -135.00 REMARK 500 LEU A 198 158.54 172.55 REMARK 500 TRP A 206 -58.73 -137.37 REMARK 500 LEU A 207 -177.99 -68.94 REMARK 500 THR A 208 -103.02 58.74 REMARK 500 ARG A 209 19.84 96.71 REMARK 500 SER A 210 -8.46 -55.09 REMARK 500 ARG A 212 96.20 -67.17 REMARK 500 TYR A 229 -17.05 86.32 REMARK 500 ASP A 236 -117.36 54.69 REMARK 500 PHE A 237 73.33 45.22 REMARK 500 LEU A 240 -65.35 -91.60 REMARK 500 ASP A 249 -9.35 79.74 REMARK 500 THR A 251 -63.20 -126.27 REMARK 500 PHE A 265 -151.96 49.97 REMARK 500 VAL A 270 -166.99 -166.59 REMARK 500 SER A 271 -162.30 -74.89 REMARK 500 ILE A 272 -147.38 61.04 REMARK 500 MET A 290 158.94 178.17 REMARK 500 PRO A 292 64.12 -63.50 REMARK 500 LYS A 294 -117.40 64.32 REMARK 500 TYR A 319 -164.49 -79.52 REMARK 500 SER A 320 54.75 82.91 REMARK 500 ARG A 345 -138.66 48.44 REMARK 500 ASN A 350 -117.14 51.47 REMARK 500 REMARK 500 THIS ENTRY HAS 100 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 99 GLY A 100 146.47 REMARK 500 GLY A 100 ALA A 101 -42.40 REMARK 500 SER A 121 GLN A 122 146.15 REMARK 500 PHE A 265 ARG A 266 -75.06 REMARK 500 GLY A 313 SER A 314 132.20 REMARK 500 SER A 314 ALA A 315 91.14 REMARK 500 TYR A 319 SER A 320 -128.77 REMARK 500 SER A 502 VAL A 503 142.21 REMARK 500 VAL A 503 LYS A 504 -146.83 REMARK 500 ASN A 728 GLY A 729 31.49 REMARK 500 VAL A 734 TYR A 735 139.92 REMARK 500 TYR A 735 SER A 736 146.21 REMARK 500 PRO A 761 LEU A 762 147.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4K3C RELATED DB: PDB DBREF 4K3B A 1 792 UNP Q5F5W8 Q5F5W8_NEIG1 1 792 SEQRES 1 A 792 MET LYS LEU LYS GLN ILE ALA SER ALA LEU MET MET LEU SEQRES 2 A 792 GLY ILE SER PRO LEU ALA PHE ALA ASP PHE THR ILE GLN SEQRES 3 A 792 ASP ILE ARG VAL GLU GLY LEU GLN ARG THR GLU PRO SER SEQRES 4 A 792 THR VAL PHE ASN TYR LEU PRO VAL LYS VAL GLY ASP THR SEQRES 5 A 792 TYR ASN ASP THR HIS GLY SER ALA ILE ILE LYS SER LEU SEQRES 6 A 792 TYR ALA THR GLY PHE PHE ASP ASP VAL ARG VAL GLU THR SEQRES 7 A 792 ALA ASP GLY GLN LEU LEU LEU THR VAL ILE GLU ARG PRO SEQRES 8 A 792 THR ILE GLY SER LEU ASN ILE THR GLY ALA LYS MET LEU SEQRES 9 A 792 GLN ASN ASP ALA ILE LYS LYS ASN LEU GLU SER PHE GLY SEQRES 10 A 792 LEU ALA GLN SER GLN TYR PHE ASN GLN ALA THR LEU ASN SEQRES 11 A 792 GLN ALA VAL ALA GLY LEU LYS GLU GLU TYR LEU GLY ARG SEQRES 12 A 792 GLY LYS LEU ASN ILE GLN ILE THR PRO LYS VAL THR LYS SEQRES 13 A 792 LEU ALA ARG ASN ARG VAL ASP ILE ASP ILE THR ILE ASP SEQRES 14 A 792 GLU GLY LYS SER ALA LYS ILE THR ASP ILE GLU PHE GLU SEQRES 15 A 792 GLY ASN GLN VAL TYR SER ASP ARG LYS LEU MET ARG GLN SEQRES 16 A 792 MET SER LEU THR GLU GLY GLY ILE TRP THR TRP LEU THR SEQRES 17 A 792 ARG SER ASP ARG PHE ASP ARG GLN LYS PHE ALA GLN ASP SEQRES 18 A 792 MET GLU LYS VAL THR ASP PHE TYR GLN ASN ASN GLY TYR SEQRES 19 A 792 PHE ASP PHE ARG ILE LEU ASP THR ASP ILE GLN THR ASN SEQRES 20 A 792 GLU ASP LYS THR ARG GLN THR ILE LYS ILE THR VAL HIS SEQRES 21 A 792 GLU GLY GLY ARG PHE ARG TRP GLY LYS VAL SER ILE GLU SEQRES 22 A 792 GLY ASP THR ASN GLU VAL PRO LYS ALA GLU LEU GLU LYS SEQRES 23 A 792 LEU LEU THR MET LYS PRO GLY LYS TRP TYR GLU ARG GLN SEQRES 24 A 792 GLN MET THR ALA VAL LEU GLY GLU ILE GLN ASN ARG MET SEQRES 25 A 792 GLY SER ALA GLY TYR ALA TYR SER GLU ILE SER VAL GLN SEQRES 26 A 792 PRO LEU PRO ASN ALA GLY THR LYS THR VAL ASP PHE VAL SEQRES 27 A 792 LEU HIS ILE GLU PRO GLY ARG LYS ILE TYR VAL ASN GLU SEQRES 28 A 792 ILE HIS ILE THR GLY ASN ASN LYS THR ARG ASP GLU VAL SEQRES 29 A 792 VAL ARG ARG GLU LEU ARG GLN MET GLU SER ALA PRO TYR SEQRES 30 A 792 ASP THR SER LYS LEU GLN ARG SER LYS GLU ARG VAL GLU SEQRES 31 A 792 LEU LEU GLY TYR PHE ASP ASN VAL GLN PHE ASP ALA VAL SEQRES 32 A 792 PRO LEU ALA GLY THR PRO ASP LYS VAL ASP LEU ASN MET SEQRES 33 A 792 SER LEU THR GLU ARG SER THR GLY SER LEU ASP LEU SER SEQRES 34 A 792 ALA GLY TRP VAL GLN ASP THR GLY LEU VAL MET SER ALA SEQRES 35 A 792 GLY VAL SER GLN ASP ASN LEU PHE GLY THR GLY LYS SER SEQRES 36 A 792 ALA ALA LEU ARG ALA SER ARG SER LYS THR THR LEU ASN SEQRES 37 A 792 GLY SER LEU SER PHE THR ASP PRO TYR PHE THR ALA ASP SEQRES 38 A 792 GLY VAL SER LEU GLY TYR ASP ILE TYR GLY LYS ALA PHE SEQRES 39 A 792 ASP PRO ARG LYS ALA SER THR SER VAL LYS GLN TYR LYS SEQRES 40 A 792 THR THR THR ALA GLY GLY GLY VAL ARG MET GLY ILE PRO SEQRES 41 A 792 VAL THR GLU TYR ASP ARG VAL ASN PHE GLY LEU ALA ALA SEQRES 42 A 792 GLU HIS LEU THR VAL ASN THR TYR ASN LYS ALA PRO LYS SEQRES 43 A 792 ARG TYR ALA ASP PHE ILE ARG LYS TYR GLY LYS THR ASP SEQRES 44 A 792 GLY ALA ASP GLY SER PHE LYS GLY LEU LEU TYR LYS GLY SEQRES 45 A 792 THR VAL GLY TRP GLY ARG ASN LYS THR ASP SER ALA SER SEQRES 46 A 792 TRP PRO THR ARG GLY TYR LEU THR GLY VAL ASN ALA GLU SEQRES 47 A 792 ILE ALA LEU PRO GLY SER LYS LEU GLN TYR TYR SER ALA SEQRES 48 A 792 THR HIS ASN GLN THR TRP PHE PHE PRO LEU SER LYS THR SEQRES 49 A 792 PHE THR LEU MET LEU GLY GLY GLU VAL GLY ILE ALA GLY SEQRES 50 A 792 GLY TYR GLY ARG THR LYS GLU ILE PRO PHE PHE GLU ASN SEQRES 51 A 792 PHE TYR GLY GLY GLY LEU GLY SER VAL ARG GLY TYR GLU SEQRES 52 A 792 SER GLY THR LEU GLY PRO LYS VAL TYR ASP GLU TYR GLY SEQRES 53 A 792 GLU LYS ILE SER TYR GLY GLY ASN LYS LYS ALA ASN VAL SEQRES 54 A 792 SER ALA GLU LEU LEU PHE PRO MET PRO GLY ALA LYS ASP SEQRES 55 A 792 ALA ARG THR VAL ARG LEU SER LEU PHE ALA ASP ALA GLY SEQRES 56 A 792 SER VAL TRP ASP GLY ARG THR TYR THR ALA ALA GLU ASN SEQRES 57 A 792 GLY ASN ASN LYS SER VAL TYR SER GLU ASN ALA HIS LYS SEQRES 58 A 792 SER THR PHE THR ASN GLU LEU ARG TYR SER ALA GLY GLY SEQRES 59 A 792 ALA VAL THR TRP LEU SER PRO LEU GLY PRO MET LYS PHE SEQRES 60 A 792 SER TYR ALA TYR PRO LEU LYS LYS LYS PRO GLU ASP GLU SEQRES 61 A 792 ILE GLN ARG PHE GLN PHE GLN LEU GLY THR THR PHE HELIX 1 1 PRO A 38 ASN A 43 1 6 HELIX 2 2 ASP A 55 ALA A 67 1 13 HELIX 3 3 GLN A 105 SER A 115 1 11 HELIX 4 4 ASN A 125 ARG A 143 1 19 HELIX 5 5 SER A 188 MET A 196 1 9 HELIX 6 6 ASP A 214 ASN A 231 1 18 HELIX 7 7 ALA A 282 LEU A 287 1 6 HELIX 8 8 GLU A 297 MET A 312 1 16 HELIX 9 9 ARG A 361 ARG A 366 1 6 HELIX 10 10 THR A 379 ARG A 384 1 6 HELIX 11 11 ARG A 384 LEU A 392 1 9 HELIX 12 12 PRO A 545 ALA A 549 5 5 HELIX 13 13 PHE A 551 GLY A 556 1 6 HELIX 14 14 GLY A 654 VAL A 659 1 6 SHEET 1 A 3 ILE A 28 GLU A 31 0 SHEET 2 A 3 GLN A 82 VAL A 87 1 O LEU A 85 N GLU A 31 SHEET 3 A 3 VAL A 74 ALA A 79 -1 N GLU A 77 O LEU A 84 SHEET 1 B 3 ILE A 93 THR A 99 0 SHEET 2 B 3 VAL A 162 GLY A 171 1 O ILE A 166 N THR A 99 SHEET 3 B 3 ASN A 147 LYS A 156 -1 N THR A 151 O THR A 167 SHEET 1 C 2 LYS A 175 ILE A 176 0 SHEET 2 C 2 ARG A 252 GLN A 253 1 O GLN A 253 N LYS A 175 SHEET 1 D 3 GLU A 180 GLU A 182 0 SHEET 2 D 3 LYS A 256 VAL A 259 1 O ILE A 257 N GLU A 180 SHEET 3 D 3 ILE A 239 ASP A 243 -1 N ASP A 243 O LYS A 256 SHEET 1 E 2 ILE A 322 PRO A 328 0 SHEET 2 E 2 VAL A 335 ILE A 341 -1 O ASP A 336 N LEU A 327 SHEET 1 F 3 HIS A 353 ILE A 354 0 SHEET 2 F 3 ASP A 413 THR A 419 1 O LEU A 414 N HIS A 353 SHEET 3 F 3 ASN A 397 VAL A 403 -1 O VAL A 403 N ASP A 413 SHEET 1 G11 SER A 425 VAL A 433 0 SHEET 2 G11 GLY A 437 LEU A 449 -1 O SER A 441 N SER A 429 SHEET 3 G11 LYS A 454 ARG A 462 -1 O ALA A 460 N ALA A 442 SHEET 4 G11 THR A 466 THR A 479 -1 O THR A 474 N SER A 455 SHEET 5 G11 VAL A 483 PHE A 494 -1 O TYR A 487 N PHE A 473 SHEET 6 G11 LYS A 507 PRO A 520 -1 O THR A 510 N LYS A 492 SHEET 7 G11 ARG A 526 ASN A 539 -1 O HIS A 535 N ALA A 511 SHEET 8 G11 SER A 564 LYS A 580 -1 O LEU A 569 N GLU A 534 SHEET 9 G11 TYR A 591 VAL A 595 -1 O TYR A 591 N LYS A 580 SHEET 10 G11 TYR A 609 PRO A 620 -1 O THR A 616 N LEU A 592 SHEET 11 G11 ALA A 597 ALA A 600 -1 N GLU A 598 O SER A 610 SHEET 1 H 9 SER A 564 LYS A 580 0 SHEET 2 H 9 ALA A 597 ALA A 600 -1 O ALA A 597 N VAL A 574 SHEET 3 H 9 TYR A 609 PRO A 620 -1 O SER A 610 N GLU A 598 SHEET 4 H 9 THR A 626 ILE A 635 -1 O LEU A 629 N TRP A 617 SHEET 5 H 9 LYS A 685 PHE A 695 -1 O GLU A 692 N MET A 628 SHEET 6 H 9 VAL A 706 TRP A 718 -1 O SER A 716 N ALA A 687 SHEET 7 H 9 VAL A 756 LEU A 759 -1 O THR A 757 N ARG A 707 SHEET 8 H 9 PRO A 764 LEU A 773 -1 O MET A 765 N TRP A 758 SHEET 9 H 9 ARG A 749 GLY A 754 -1 N ALA A 752 O TYR A 771 SHEET 1 I 5 VAL A 706 TRP A 718 0 SHEET 2 I 5 ARG A 749 GLY A 754 -1 O GLY A 753 N PHE A 711 SHEET 3 I 5 PRO A 764 LEU A 773 -1 O TYR A 771 N ALA A 752 SHEET 4 I 5 PHE A 784 GLY A 789 -1 O GLN A 787 N LYS A 766 SHEET 5 I 5 SER A 425 VAL A 433 -1 N TRP A 432 O LEU A 788 SHEET 1 J 2 LYS A 670 ASP A 673 0 SHEET 2 J 2 GLU A 677 SER A 680 -1 O GLU A 677 N ASP A 673 CISPEP 1 GLN A 34 ARG A 35 0 2.49 CISPEP 2 GLY A 117 LEU A 118 0 -17.86 CISPEP 3 ALA A 158 ARG A 159 0 -10.02 CISPEP 4 ASN A 184 GLN A 185 0 -22.47 CISPEP 5 GLY A 263 ARG A 264 0 -10.31 CISPEP 6 LYS A 269 VAL A 270 0 19.46 CISPEP 7 ILE A 272 GLU A 273 0 -17.80 CISPEP 8 GLY A 274 ASP A 275 0 -17.43 CISPEP 9 THR A 332 LYS A 333 0 -6.06 CISPEP 10 LEU A 449 PHE A 450 0 -15.92 CISPEP 11 ASN A 542 LYS A 543 0 -9.37 CISPEP 12 GLY A 560 ALA A 561 0 22.67 CISPEP 13 GLY A 699 ALA A 700 0 -23.02 CISPEP 14 ALA A 725 ALA A 726 0 14.46 CRYST1 59.525 270.206 190.618 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016800 0.000000 0.000000 0.00000 SCALE2 0.000000 0.003701 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005246 0.00000