HEADER TRANSFERASE/RNA 12-APR-13 4K4T TITLE POLIOVIRUS POLYMERASE ELONGATION COMPLEX (R4_FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-DIRECTED RNA POLYMERASE 3D-POL; COMPND 3 CHAIN: A, E; COMPND 4 FRAGMENT: UNP RESIDUES 1749-2209; COMPND 5 SYNONYM: GENOME POLYPROTEIN; COMPND 6 EC: 2.7.7.48; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: RNA (5'- COMPND 11 R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*GP*AP*AP*A)- COMPND 12 3'); COMPND 13 CHAIN: B, F; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: RNA (5'-R(P*UP*GP*UP*UP*CP*CP*GP*AP*GP*AP*GP*A)-3'); COMPND 17 CHAIN: C, G; COMPND 18 ENGINEERED: YES; COMPND 19 MOL_ID: 4; COMPND 20 MOLECULE: RNA (5'-R(*GP*GP*GP*AP*GP*AP*UP*GP*A)-3'); COMPND 21 CHAIN: D, H; COMPND 22 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN POLIOVIRUS 1; SOURCE 3 ORGANISM_TAXID: 12081; SOURCE 4 STRAIN: MAHONEY; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 MOL_ID: 3; SOURCE 10 SYNTHETIC: YES; SOURCE 11 MOL_ID: 4; SOURCE 12 SYNTHETIC: YES KEYWDS POLYMERASE, RNA-DEPENDENT RNA POLYMERASE, PROTEIN-RNA COMPLEX, KEYWDS 2 TRANSFERASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.GONG,O.B.PEERSEN REVDAT 3 28-FEB-24 4K4T 1 REMARK SEQADV LINK REVDAT 2 03-JUL-13 4K4T 1 JRNL REVDAT 1 22-MAY-13 4K4T 0 JRNL AUTH P.GONG,M.G.KORTUS,J.C.NIX,R.E.DAVIS,O.B.PEERSEN JRNL TITL STRUCTURES OF COXSACKIEVIRUS, RHINOVIRUS, AND POLIOVIRUS JRNL TITL 2 POLYMERASE ELONGATION COMPLEXES SOLVED BY ENGINEERING RNA JRNL TITL 3 MEDIATED CRYSTAL CONTACTS. JRNL REF PLOS ONE V. 8 60272 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23667424 JRNL DOI 10.1371/JOURNAL.PONE.0060272 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 31380 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1602 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.9656 - 6.1119 0.96 2697 146 0.1792 0.2294 REMARK 3 2 6.1119 - 4.8528 0.96 2699 147 0.1832 0.2281 REMARK 3 3 4.8528 - 4.2398 0.96 2712 129 0.1588 0.2107 REMARK 3 4 4.2398 - 3.8524 0.96 2745 142 0.1753 0.2311 REMARK 3 5 3.8524 - 3.5764 0.96 2694 152 0.2040 0.3121 REMARK 3 6 3.5764 - 3.3656 0.97 2727 139 0.2284 0.2723 REMARK 3 7 3.3656 - 3.1971 0.96 2697 162 0.2721 0.3534 REMARK 3 8 3.1971 - 3.0579 0.96 2717 142 0.2625 0.3541 REMARK 3 9 3.0579 - 2.9402 0.96 2684 142 0.2806 0.3358 REMARK 3 10 2.9402 - 2.8388 0.96 2671 169 0.2880 0.3545 REMARK 3 11 2.8388 - 2.7500 0.95 2735 132 0.3026 0.3137 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.840 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 9184 REMARK 3 ANGLE : 1.216 12728 REMARK 3 CHIRALITY : 0.052 1440 REMARK 3 PLANARITY : 0.007 1370 REMARK 3 DIHEDRAL : 17.600 3606 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4K4T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000078891. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NOIR-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK 9.9.9.1L REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31399 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 46.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 1.910 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 1.91 REMARK 200 R MERGE FOR SHELL (I) : 0.46800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.16 M MGCL2, 0.08 M TRIS-HCL, 24% REMARK 280 (W/V) PEG 4000, 20% (V/V) GLYCEROL AND DIRECTLY FROZEN FOR DATA REMARK 280 COLLECTION , VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CHAINS (A,B,C,D) AND CHAINS (E,F,G,H) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 463 REMARK 465 SER A 464 REMARK 465 SER A 465 REMARK 465 HIS A 466 REMARK 465 HIS A 467 REMARK 465 HIS A 468 REMARK 465 HIS A 469 REMARK 465 HIS A 470 REMARK 465 HIS A 471 REMARK 465 A B 590 REMARK 465 A B 591 REMARK 465 G B 592 REMARK 465 U B 593 REMARK 465 C B 594 REMARK 465 G D 0 REMARK 465 A D 5 REMARK 465 U D 6 REMARK 465 G D 7 REMARK 465 A D 8 REMARK 465 SER E 463 REMARK 465 SER E 464 REMARK 465 SER E 465 REMARK 465 HIS E 466 REMARK 465 HIS E 467 REMARK 465 HIS E 468 REMARK 465 HIS E 469 REMARK 465 HIS E 470 REMARK 465 HIS E 471 REMARK 465 A F 590 REMARK 465 A F 591 REMARK 465 G F 592 REMARK 465 U F 593 REMARK 465 C F 594 REMARK 465 G H 0 REMARK 465 A H 5 REMARK 465 U H 6 REMARK 465 G H 7 REMARK 465 A H 8 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO E 407 OG1 THR E 410 2.10 REMARK 500 O MET A 225 O HOH A 621 2.12 REMARK 500 OD2 ASP A 358 OG1 THR A 372 2.15 REMARK 500 N7 G B 599 O HOH B 805 2.16 REMARK 500 O PRO A 407 OG1 THR A 410 2.17 REMARK 500 OE1 GLN E 84 NH2 ARG E 306 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 9 -46.24 -17.37 REMARK 500 PHE A 54 -72.75 -67.58 REMARK 500 THR A 104 -178.35 -171.31 REMARK 500 ASP A 105 107.93 -57.56 REMARK 500 SER A 113 44.04 -104.90 REMARK 500 GLU A 226 -149.57 -89.93 REMARK 500 GLU A 227 -82.01 -96.54 REMARK 500 PHE A 258 41.32 -102.02 REMARK 500 LYS A 276 -105.28 55.25 REMARK 500 ALA A 361 20.64 -70.97 REMARK 500 TRP A 368 -19.89 -28.86 REMARK 500 ASP A 406 111.71 -168.78 REMARK 500 SER E 9 -53.35 -9.68 REMARK 500 PHE E 54 -73.66 -67.00 REMARK 500 ASP E 105 109.37 -53.59 REMARK 500 SER E 113 42.94 -105.66 REMARK 500 GLU E 226 -152.50 -91.43 REMARK 500 GLU E 227 -81.48 -96.92 REMARK 500 PHE E 258 42.85 -100.90 REMARK 500 ASP E 260 -7.65 -59.83 REMARK 500 LYS E 276 -103.15 56.63 REMARK 500 ALA E 361 22.01 -71.83 REMARK 500 TRP E 368 -20.68 -32.37 REMARK 500 ASP E 406 111.98 -166.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 270 NE2 REMARK 620 2 HIS A 272 NE2 105.7 REMARK 620 3 CYS A 281 SG 93.9 107.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 270 NE2 REMARK 620 2 HIS E 272 NE2 107.1 REMARK 620 3 CYS E 281 SG 95.1 107.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL E 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL E 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN E 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3OL6 RELATED DB: PDB REMARK 900 RELATED ID: 1RA6 RELATED DB: PDB REMARK 900 RELATED ID: 4K4S RELATED DB: PDB REMARK 900 RELATED ID: 4K4U RELATED DB: PDB REMARK 900 RELATED ID: 4K4V RELATED DB: PDB REMARK 900 RELATED ID: 4K4W RELATED DB: PDB REMARK 900 RELATED ID: 4K4X RELATED DB: PDB REMARK 900 RELATED ID: 4K4Y RELATED DB: PDB REMARK 900 RELATED ID: 4K4Z RELATED DB: PDB REMARK 900 RELATED ID: 4K50 RELATED DB: PDB DBREF 4K4T A 1 461 UNP P03300 POLG_POL1M 1749 2209 DBREF 4K4T E 1 461 UNP P03300 POLG_POL1M 1749 2209 DBREF 4K4T B 590 611 PDB 4K4T 4K4T 590 611 DBREF 4K4T F 590 611 PDB 4K4T 4K4T 590 611 DBREF 4K4T C 690 701 PDB 4K4T 4K4T 690 701 DBREF 4K4T G 690 701 PDB 4K4T 4K4T 690 701 DBREF 4K4T D 0 8 PDB 4K4T 4K4T 0 8 DBREF 4K4T H 0 8 PDB 4K4T 4K4T 0 8 SEQADV 4K4T ASP A 446 UNP P03300 LEU 2194 ENGINEERED MUTATION SEQADV 4K4T GLY A 462 UNP P03300 EXPRESSION TAG SEQADV 4K4T SER A 463 UNP P03300 EXPRESSION TAG SEQADV 4K4T SER A 464 UNP P03300 EXPRESSION TAG SEQADV 4K4T SER A 465 UNP P03300 EXPRESSION TAG SEQADV 4K4T HIS A 466 UNP P03300 EXPRESSION TAG SEQADV 4K4T HIS A 467 UNP P03300 EXPRESSION TAG SEQADV 4K4T HIS A 468 UNP P03300 EXPRESSION TAG SEQADV 4K4T HIS A 469 UNP P03300 EXPRESSION TAG SEQADV 4K4T HIS A 470 UNP P03300 EXPRESSION TAG SEQADV 4K4T HIS A 471 UNP P03300 EXPRESSION TAG SEQADV 4K4T ASP E 446 UNP P03300 LEU 2194 ENGINEERED MUTATION SEQADV 4K4T GLY E 462 UNP P03300 EXPRESSION TAG SEQADV 4K4T SER E 463 UNP P03300 EXPRESSION TAG SEQADV 4K4T SER E 464 UNP P03300 EXPRESSION TAG SEQADV 4K4T SER E 465 UNP P03300 EXPRESSION TAG SEQADV 4K4T HIS E 466 UNP P03300 EXPRESSION TAG SEQADV 4K4T HIS E 467 UNP P03300 EXPRESSION TAG SEQADV 4K4T HIS E 468 UNP P03300 EXPRESSION TAG SEQADV 4K4T HIS E 469 UNP P03300 EXPRESSION TAG SEQADV 4K4T HIS E 470 UNP P03300 EXPRESSION TAG SEQADV 4K4T HIS E 471 UNP P03300 EXPRESSION TAG SEQRES 1 A 471 GLY GLU ILE GLN TRP MET ARG PRO SER LYS GLU VAL GLY SEQRES 2 A 471 TYR PRO ILE ILE ASN ALA PRO SER LYS THR LYS LEU GLU SEQRES 3 A 471 PRO SER ALA PHE HIS TYR VAL PHE GLU GLY VAL LYS GLU SEQRES 4 A 471 PRO ALA VAL LEU THR LYS ASN ASP PRO ARG LEU LYS THR SEQRES 5 A 471 ASP PHE GLU GLU ALA ILE PHE SER LYS TYR VAL GLY ASN SEQRES 6 A 471 LYS ILE THR GLU VAL ASP GLU TYR MET LYS GLU ALA VAL SEQRES 7 A 471 ASP HIS TYR ALA GLY GLN LEU MET SER LEU ASP ILE ASN SEQRES 8 A 471 THR GLU GLN MET CYS LEU GLU ASP ALA MET TYR GLY THR SEQRES 9 A 471 ASP GLY LEU GLU ALA LEU ASP LEU SER THR SER ALA GLY SEQRES 10 A 471 TYR PRO TYR VAL ALA MET GLY LYS LYS LYS ARG ASP ILE SEQRES 11 A 471 LEU ASN LYS GLN THR ARG ASP THR LYS GLU MET GLN LYS SEQRES 12 A 471 LEU LEU ASP THR TYR GLY ILE ASN LEU PRO LEU VAL THR SEQRES 13 A 471 TYR VAL LYS ASP GLU LEU ARG SER LYS THR LYS VAL GLU SEQRES 14 A 471 GLN GLY LYS SER ARG LEU ILE GLU ALA SER SER LEU ASN SEQRES 15 A 471 ASP SER VAL ALA MET ARG MET ALA PHE GLY ASN LEU TYR SEQRES 16 A 471 ALA ALA PHE HIS LYS ASN PRO GLY VAL ILE THR GLY SER SEQRES 17 A 471 ALA VAL GLY CYS ASP PRO ASP LEU PHE TRP SER LYS ILE SEQRES 18 A 471 PRO VAL LEU MET GLU GLU LYS LEU PHE ALA PHE ASP TYR SEQRES 19 A 471 THR GLY TYR ASP ALA SER LEU SER PRO ALA TRP PHE GLU SEQRES 20 A 471 ALA LEU LYS MET VAL LEU GLU LYS ILE GLY PHE GLY ASP SEQRES 21 A 471 ARG VAL ASP TYR ILE ASP TYR LEU ASN HIS SER HIS HIS SEQRES 22 A 471 LEU TYR LYS ASN LYS THR TYR CYS VAL LYS GLY GLY MET SEQRES 23 A 471 PRO SER GLY CYS SER GLY THR SER ILE PHE ASN SER MET SEQRES 24 A 471 ILE ASN ASN LEU ILE ILE ARG THR LEU LEU LEU LYS THR SEQRES 25 A 471 TYR LYS GLY ILE ASP LEU ASP HIS LEU LYS MET ILE ALA SEQRES 26 A 471 TYR GLY ASP ASP VAL ILE ALA SER TYR PRO HIS GLU VAL SEQRES 27 A 471 ASP ALA SER LEU LEU ALA GLN SER GLY LYS ASP TYR GLY SEQRES 28 A 471 LEU THR MET THR PRO ALA ASP LYS SER ALA THR PHE GLU SEQRES 29 A 471 THR VAL THR TRP GLU ASN VAL THR PHE LEU LYS ARG PHE SEQRES 30 A 471 PHE ARG ALA ASP GLU LYS TYR PRO PHE LEU ILE HIS PRO SEQRES 31 A 471 VAL MET PRO MET LYS GLU ILE HIS GLU SER ILE ARG TRP SEQRES 32 A 471 THR LYS ASP PRO ARG ASN THR GLN ASP HIS VAL ARG SER SEQRES 33 A 471 LEU CYS LEU LEU ALA TRP HIS ASN GLY GLU GLU GLU TYR SEQRES 34 A 471 ASN LYS PHE LEU ALA LYS ILE ARG SER VAL PRO ILE GLY SEQRES 35 A 471 ARG ALA LEU ASP LEU PRO GLU TYR SER THR LEU TYR ARG SEQRES 36 A 471 ARG TRP LEU ASP SER PHE GLY SER SER SER HIS HIS HIS SEQRES 37 A 471 HIS HIS HIS SEQRES 1 B 22 A A G U C U C C A G G U C SEQRES 2 B 22 U C U C G G A A A SEQRES 1 C 12 U G U U C C G A G A G A SEQRES 1 D 9 G G G A G A U G A SEQRES 1 E 471 GLY GLU ILE GLN TRP MET ARG PRO SER LYS GLU VAL GLY SEQRES 2 E 471 TYR PRO ILE ILE ASN ALA PRO SER LYS THR LYS LEU GLU SEQRES 3 E 471 PRO SER ALA PHE HIS TYR VAL PHE GLU GLY VAL LYS GLU SEQRES 4 E 471 PRO ALA VAL LEU THR LYS ASN ASP PRO ARG LEU LYS THR SEQRES 5 E 471 ASP PHE GLU GLU ALA ILE PHE SER LYS TYR VAL GLY ASN SEQRES 6 E 471 LYS ILE THR GLU VAL ASP GLU TYR MET LYS GLU ALA VAL SEQRES 7 E 471 ASP HIS TYR ALA GLY GLN LEU MET SER LEU ASP ILE ASN SEQRES 8 E 471 THR GLU GLN MET CYS LEU GLU ASP ALA MET TYR GLY THR SEQRES 9 E 471 ASP GLY LEU GLU ALA LEU ASP LEU SER THR SER ALA GLY SEQRES 10 E 471 TYR PRO TYR VAL ALA MET GLY LYS LYS LYS ARG ASP ILE SEQRES 11 E 471 LEU ASN LYS GLN THR ARG ASP THR LYS GLU MET GLN LYS SEQRES 12 E 471 LEU LEU ASP THR TYR GLY ILE ASN LEU PRO LEU VAL THR SEQRES 13 E 471 TYR VAL LYS ASP GLU LEU ARG SER LYS THR LYS VAL GLU SEQRES 14 E 471 GLN GLY LYS SER ARG LEU ILE GLU ALA SER SER LEU ASN SEQRES 15 E 471 ASP SER VAL ALA MET ARG MET ALA PHE GLY ASN LEU TYR SEQRES 16 E 471 ALA ALA PHE HIS LYS ASN PRO GLY VAL ILE THR GLY SER SEQRES 17 E 471 ALA VAL GLY CYS ASP PRO ASP LEU PHE TRP SER LYS ILE SEQRES 18 E 471 PRO VAL LEU MET GLU GLU LYS LEU PHE ALA PHE ASP TYR SEQRES 19 E 471 THR GLY TYR ASP ALA SER LEU SER PRO ALA TRP PHE GLU SEQRES 20 E 471 ALA LEU LYS MET VAL LEU GLU LYS ILE GLY PHE GLY ASP SEQRES 21 E 471 ARG VAL ASP TYR ILE ASP TYR LEU ASN HIS SER HIS HIS SEQRES 22 E 471 LEU TYR LYS ASN LYS THR TYR CYS VAL LYS GLY GLY MET SEQRES 23 E 471 PRO SER GLY CYS SER GLY THR SER ILE PHE ASN SER MET SEQRES 24 E 471 ILE ASN ASN LEU ILE ILE ARG THR LEU LEU LEU LYS THR SEQRES 25 E 471 TYR LYS GLY ILE ASP LEU ASP HIS LEU LYS MET ILE ALA SEQRES 26 E 471 TYR GLY ASP ASP VAL ILE ALA SER TYR PRO HIS GLU VAL SEQRES 27 E 471 ASP ALA SER LEU LEU ALA GLN SER GLY LYS ASP TYR GLY SEQRES 28 E 471 LEU THR MET THR PRO ALA ASP LYS SER ALA THR PHE GLU SEQRES 29 E 471 THR VAL THR TRP GLU ASN VAL THR PHE LEU LYS ARG PHE SEQRES 30 E 471 PHE ARG ALA ASP GLU LYS TYR PRO PHE LEU ILE HIS PRO SEQRES 31 E 471 VAL MET PRO MET LYS GLU ILE HIS GLU SER ILE ARG TRP SEQRES 32 E 471 THR LYS ASP PRO ARG ASN THR GLN ASP HIS VAL ARG SER SEQRES 33 E 471 LEU CYS LEU LEU ALA TRP HIS ASN GLY GLU GLU GLU TYR SEQRES 34 E 471 ASN LYS PHE LEU ALA LYS ILE ARG SER VAL PRO ILE GLY SEQRES 35 E 471 ARG ALA LEU ASP LEU PRO GLU TYR SER THR LEU TYR ARG SEQRES 36 E 471 ARG TRP LEU ASP SER PHE GLY SER SER SER HIS HIS HIS SEQRES 37 E 471 HIS HIS HIS SEQRES 1 F 22 A A G U C U C C A G G U C SEQRES 2 F 22 U C U C G G A A A SEQRES 1 G 12 U G U U C C G A G A G A SEQRES 1 H 9 G G G A G A U G A HET GOL A 501 6 HET ZN A 502 1 HET GOL B 701 6 HET GOL E 501 6 HET GOL E 502 6 HET ZN E 503 1 HETNAM GOL GLYCEROL HETNAM ZN ZINC ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 9 GOL 4(C3 H8 O3) FORMUL 10 ZN 2(ZN 2+) FORMUL 15 HOH *98(H2 O) HELIX 1 1 LYS A 10 GLY A 13 5 4 HELIX 2 2 ASP A 53 PHE A 59 1 7 HELIX 3 3 ASP A 71 SER A 87 1 17 HELIX 4 4 CYS A 96 GLY A 103 1 8 HELIX 5 5 PRO A 119 GLY A 124 5 6 HELIX 6 6 LYS A 126 LEU A 131 1 6 HELIX 7 7 THR A 138 GLY A 149 1 12 HELIX 8 8 SER A 164 GLN A 170 1 7 HELIX 9 9 SER A 180 ASN A 201 1 22 HELIX 10 10 ASP A 213 TRP A 218 1 6 HELIX 11 11 LYS A 220 MET A 225 1 6 HELIX 12 12 GLY A 236 LEU A 241 1 6 HELIX 13 13 SER A 242 GLY A 257 1 16 HELIX 14 14 PHE A 258 ARG A 261 5 4 HELIX 15 15 VAL A 262 ASN A 269 1 8 HELIX 16 16 GLY A 292 TYR A 313 1 22 HELIX 17 17 ASP A 317 LEU A 321 5 5 HELIX 18 18 ASP A 339 LYS A 348 1 10 HELIX 19 19 ASP A 349 GLY A 351 5 3 HELIX 20 20 PRO A 356 SER A 360 5 5 HELIX 21 21 PRO A 393 ARG A 402 1 10 HELIX 22 22 ASP A 406 ARG A 408 5 3 HELIX 23 23 ASN A 409 TRP A 422 1 14 HELIX 24 24 GLY A 425 SER A 438 1 14 HELIX 25 25 ILE A 441 LEU A 445 5 5 HELIX 26 26 GLU A 449 SER A 460 1 12 HELIX 27 27 PRO E 8 VAL E 12 5 5 HELIX 28 28 ASP E 53 PHE E 59 1 7 HELIX 29 29 ASP E 71 SER E 87 1 17 HELIX 30 30 CYS E 96 GLY E 103 1 8 HELIX 31 31 PRO E 119 GLY E 124 5 6 HELIX 32 32 LYS E 126 ILE E 130 5 5 HELIX 33 33 THR E 138 GLY E 149 1 12 HELIX 34 34 SER E 164 GLY E 171 1 8 HELIX 35 35 SER E 180 ASN E 201 1 22 HELIX 36 36 ASP E 213 TRP E 218 1 6 HELIX 37 37 LYS E 220 MET E 225 1 6 HELIX 38 38 GLY E 236 LEU E 241 1 6 HELIX 39 39 SER E 242 GLY E 257 1 16 HELIX 40 40 PHE E 258 ARG E 261 5 4 HELIX 41 41 VAL E 262 ASN E 269 1 8 HELIX 42 42 GLY E 292 TYR E 313 1 22 HELIX 43 43 ASP E 317 LEU E 321 5 5 HELIX 44 44 ASP E 339 TYR E 350 1 12 HELIX 45 45 PRO E 356 SER E 360 5 5 HELIX 46 46 PRO E 393 ARG E 402 1 10 HELIX 47 47 ASP E 406 ARG E 408 5 3 HELIX 48 48 ASN E 409 TRP E 422 1 14 HELIX 49 49 GLY E 425 SER E 438 1 14 HELIX 50 50 ILE E 441 LEU E 445 5 5 HELIX 51 51 GLU E 449 SER E 460 1 12 SHEET 1 A 5 GLU A 2 PRO A 8 0 SHEET 2 A 5 LYS A 278 LYS A 283 -1 O CYS A 281 N GLN A 4 SHEET 3 A 5 HIS A 270 TYR A 275 -1 N SER A 271 O VAL A 282 SHEET 4 A 5 LEU A 154 VAL A 158 1 N THR A 156 O LEU A 274 SHEET 5 A 5 LEU A 175 ALA A 178 -1 O ALA A 178 N VAL A 155 SHEET 1 B 2 GLU A 26 PRO A 27 0 SHEET 2 B 2 TRP A 403 THR A 404 -1 O THR A 404 N GLU A 26 SHEET 1 C 2 GLU A 39 PRO A 40 0 SHEET 2 C 2 LEU A 162 ARG A 163 -1 O ARG A 163 N GLU A 39 SHEET 1 D 3 LYS A 228 PHE A 230 0 SHEET 2 D 3 ASP A 329 TYR A 334 -1 O ALA A 332 N PHE A 230 SHEET 3 D 3 LYS A 322 TYR A 326 -1 N LYS A 322 O SER A 333 SHEET 1 E 2 ASP A 233 TYR A 234 0 SHEET 2 E 2 MET A 354 THR A 355 -1 O THR A 355 N ASP A 233 SHEET 1 F 2 PHE A 377 ALA A 380 0 SHEET 2 F 2 ILE A 388 VAL A 391 -1 O HIS A 389 N ARG A 379 SHEET 1 G 5 GLU E 2 ARG E 7 0 SHEET 2 G 5 LYS E 278 LYS E 283 -1 O CYS E 281 N GLN E 4 SHEET 3 G 5 HIS E 270 TYR E 275 -1 N SER E 271 O VAL E 282 SHEET 4 G 5 LEU E 154 VAL E 158 1 N THR E 156 O LEU E 274 SHEET 5 G 5 LEU E 175 ALA E 178 -1 O ALA E 178 N VAL E 155 SHEET 1 H 2 GLU E 26 PRO E 27 0 SHEET 2 H 2 TRP E 403 THR E 404 -1 O THR E 404 N GLU E 26 SHEET 1 I 2 GLU E 39 PRO E 40 0 SHEET 2 I 2 LEU E 162 ARG E 163 -1 O ARG E 163 N GLU E 39 SHEET 1 J 3 LYS E 228 PHE E 230 0 SHEET 2 J 3 ASP E 329 TYR E 334 -1 O ALA E 332 N PHE E 230 SHEET 3 J 3 LYS E 322 TYR E 326 -1 N LYS E 322 O SER E 333 SHEET 1 K 2 ASP E 233 THR E 235 0 SHEET 2 K 2 THR E 353 THR E 355 -1 O THR E 355 N ASP E 233 SHEET 1 L 2 PHE E 377 ALA E 380 0 SHEET 2 L 2 ILE E 388 VAL E 391 -1 O VAL E 391 N PHE E 377 LINK NE2 HIS A 270 ZN ZN A 502 1555 1555 2.02 LINK NE2 HIS A 272 ZN ZN A 502 1555 1555 1.98 LINK SG CYS A 281 ZN ZN A 502 1555 1555 2.15 LINK NE2 HIS E 270 ZN ZN E 503 1555 1555 1.96 LINK NE2 HIS E 272 ZN ZN E 503 1555 1555 2.04 LINK SG CYS E 281 ZN ZN E 503 1555 1555 2.24 CISPEP 1 TYR A 118 PRO A 119 0 -1.21 CISPEP 2 TYR E 118 PRO E 119 0 -0.17 SITE 1 AC1 4 ASP A 233 TYR A 234 THR A 235 THR A 355 SITE 1 AC2 4 HIS A 270 HIS A 272 CYS A 281 ASP E 146 SITE 1 AC3 7 CYS A 212 TYR A 326 ARG A 376 U B 603 SITE 2 AC3 7 HOH B 807 G C 700 HOH C 806 SITE 1 AC4 5 ASP E 233 ASP E 329 VAL E 330 THR E 372 SITE 2 AC4 5 PHE E 373 SITE 1 AC5 4 ASP E 233 TYR E 234 THR E 235 THR E 355 SITE 1 AC6 4 ASP A 146 HIS E 270 HIS E 272 CYS E 281 CRYST1 59.401 59.248 97.455 78.11 78.09 78.85 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016835 -0.003318 -0.003023 0.00000 SCALE2 0.000000 0.017203 -0.003022 0.00000 SCALE3 0.000000 0.000000 0.010648 0.00000