HEADER TRANSFERASE/RNA 12-APR-13 4K4W TITLE POLIOVIRUS POLYMERASE ELONGATION COMPLEX (R5+2_FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-DIRECTED RNA POLYMERASE 3D-POL; COMPND 3 CHAIN: A, E; COMPND 4 FRAGMENT: UNP RESIDUES 1749-2209; COMPND 5 SYNONYM: GENOME POLYPROTEIN; COMPND 6 EC: 2.7.7.48; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: RNA (5'- COMPND 11 R(P*GP*GP*GP*AP*GP*AP*UP*GP*AP*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP COMPND 12 *UP*CP*UP*CP*UP*CP*GP*UP*CP*GP*AP*AP*A)-3'); COMPND 13 CHAIN: B, F; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: RNA (5'- COMPND 17 R(*UP*GP*UP*UP*CP*GP*AP*CP*GP*AP*GP*AP*GP*AP*GP*AP*CP*C)-3'); COMPND 18 CHAIN: C, G; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN POLIOVIRUS 1; SOURCE 3 ORGANISM_TAXID: 12081; SOURCE 4 STRAIN: MAHONEY; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 MOL_ID: 3; SOURCE 10 SYNTHETIC: YES KEYWDS POLYMERASE, RNA-DEPENDENT RNA POLYMERASE, PROTEIN-RNA COMPLEX, KEYWDS 2 TRANSFERASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.GONG,O.B.PEERSEN REVDAT 3 28-FEB-24 4K4W 1 SEQADV REVDAT 2 03-JUL-13 4K4W 1 JRNL REVDAT 1 22-MAY-13 4K4W 0 JRNL AUTH P.GONG,M.G.KORTUS,J.C.NIX,R.E.DAVIS,O.B.PEERSEN JRNL TITL STRUCTURES OF COXSACKIEVIRUS, RHINOVIRUS, AND POLIOVIRUS JRNL TITL 2 POLYMERASE ELONGATION COMPLEXES SOLVED BY ENGINEERING RNA JRNL TITL 3 MEDIATED CRYSTAL CONTACTS. JRNL REF PLOS ONE V. 8 60272 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23667424 JRNL DOI 10.1371/JOURNAL.PONE.0060272 REMARK 2 REMARK 2 RESOLUTION. 2.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 39801 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2022 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.3812 - 6.4762 0.96 2665 138 0.1712 0.1806 REMARK 3 2 6.4762 - 5.1432 0.98 2735 146 0.1793 0.2277 REMARK 3 3 5.1432 - 4.4939 0.99 2691 164 0.1659 0.2166 REMARK 3 4 4.4939 - 4.0834 0.99 2747 141 0.1624 0.2019 REMARK 3 5 4.0834 - 3.7909 0.96 2598 154 0.2028 0.2642 REMARK 3 6 3.7909 - 3.5675 0.97 2680 147 0.2621 0.3236 REMARK 3 7 3.5675 - 3.3889 0.96 2660 129 0.2780 0.2972 REMARK 3 8 3.3889 - 3.2415 0.98 2749 134 0.2659 0.3197 REMARK 3 9 3.2415 - 3.1167 0.99 2724 157 0.2891 0.3666 REMARK 3 10 3.1167 - 3.0092 0.98 2721 152 0.2983 0.3751 REMARK 3 11 3.0092 - 2.9151 0.98 2662 145 0.2989 0.3640 REMARK 3 12 2.9151 - 2.8318 0.98 2733 133 0.3137 0.3333 REMARK 3 13 2.8318 - 2.7573 0.98 2752 148 0.3269 0.3969 REMARK 3 14 2.7573 - 2.6900 0.98 2662 134 0.3429 0.3472 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 9274 REMARK 3 ANGLE : 1.217 12880 REMARK 3 CHIRALITY : 0.049 1465 REMARK 3 PLANARITY : 0.007 1375 REMARK 3 DIHEDRAL : 17.722 3656 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4K4W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000078894. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5-9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NOIR-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK 9.9.9.1L REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39877 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.690 REMARK 200 RESOLUTION RANGE LOW (A) : 42.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 1.990 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.98 REMARK 200 R MERGE FOR SHELL (I) : 0.45600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4.8%(V/V) ISOPROPANOL, 0.096 M REMARK 280 TACSIMATE, 1.92-1.95 M AMMONIUM SULFATE, AND 10-11%(V/V) REMARK 280 GLYCEROL AND THEN GRADUALLY EXCHANGED INTO A CRYO STABILIZER REMARK 280 SOLUTION CONTAINING 4.8%(V/V) ISOPROPANOL, 0.096 M TACSIMATE, REMARK 280 1.95 M AMMONIUM SULFATE AND 19-27%(V/V) XYLITOL WITH CTP PRIOR REMARK 280 TO FREEZING, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, G, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 463 REMARK 465 SER A 464 REMARK 465 SER A 465 REMARK 465 HIS A 466 REMARK 465 HIS A 467 REMARK 465 HIS A 468 REMARK 465 HIS A 469 REMARK 465 HIS A 470 REMARK 465 HIS A 471 REMARK 465 A B 586 REMARK 465 G B 587 REMARK 465 A B 588 REMARK 465 U B 589 REMARK 465 G B 590 REMARK 465 A B 591 REMARK 465 A B 592 REMARK 465 A B 593 REMARK 465 G B 594 REMARK 465 U B 595 REMARK 465 C B 596 REMARK 465 U B 597 REMARK 465 A B 616 REMARK 465 A B 617 REMARK 465 U C 684 REMARK 465 G C 685 REMARK 465 U C 686 REMARK 465 U C 687 REMARK 465 SER E 463 REMARK 465 SER E 464 REMARK 465 SER E 465 REMARK 465 HIS E 466 REMARK 465 HIS E 467 REMARK 465 HIS E 468 REMARK 465 HIS E 469 REMARK 465 HIS E 470 REMARK 465 HIS E 471 REMARK 465 U G 684 REMARK 465 G G 685 REMARK 465 U G 686 REMARK 465 A F 586 REMARK 465 G F 587 REMARK 465 A F 588 REMARK 465 U F 589 REMARK 465 G F 590 REMARK 465 A F 591 REMARK 465 A F 592 REMARK 465 A F 593 REMARK 465 G F 594 REMARK 465 U F 595 REMARK 465 C F 596 REMARK 465 U F 597 REMARK 465 A F 616 REMARK 465 A F 617 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 215 O HOH A 544 2.00 REMARK 500 OE1 GLU A 399 O HOH A 504 2.09 REMARK 500 OE1 GLN A 84 NH2 ARG A 306 2.15 REMARK 500 OD2 ASP A 53 O HOH A 514 2.17 REMARK 500 OG SER E 115 OP1 C F 599 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O VAL A 12 OH TYR E 148 1664 2.06 REMARK 500 OH TYR A 148 O VAL E 12 1664 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 212 CA - CB - SG ANGL. DEV. = 10.6 DEGREES REMARK 500 CYS E 212 CA - CB - SG ANGL. DEV. = 8.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 71 -176.52 -66.05 REMARK 500 THR A 104 -171.71 -170.26 REMARK 500 GLN A 170 0.22 -68.71 REMARK 500 LYS A 276 -110.16 45.00 REMARK 500 LYS A 311 33.92 -76.43 REMARK 500 THR A 312 -47.23 -158.93 REMARK 500 LYS A 359 12.81 47.84 REMARK 500 ASP A 406 110.44 177.84 REMARK 500 THR E 52 -169.73 -168.65 REMARK 500 THR E 104 -169.66 -169.37 REMARK 500 GLN E 170 4.47 -69.46 REMARK 500 LYS E 276 -110.12 45.38 REMARK 500 TYR E 313 75.24 -116.80 REMARK 500 LYS E 359 12.56 48.72 REMARK 500 ASP E 406 109.61 176.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3OL6 RELATED DB: PDB REMARK 900 RELATED ID: 1RA6 RELATED DB: PDB REMARK 900 RELATED ID: 4K4S RELATED DB: PDB REMARK 900 RELATED ID: 4K4T RELATED DB: PDB REMARK 900 RELATED ID: 4K4U RELATED DB: PDB REMARK 900 RELATED ID: 4K4V RELATED DB: PDB REMARK 900 RELATED ID: 4K4X RELATED DB: PDB REMARK 900 RELATED ID: 4K4Y RELATED DB: PDB REMARK 900 RELATED ID: 4K4Z RELATED DB: PDB REMARK 900 RELATED ID: 4K50 RELATED DB: PDB DBREF 4K4W A 1 461 UNP P03300 POLG_POL1M 1749 2209 DBREF 4K4W E 1 461 UNP P03300 POLG_POL1M 1749 2209 DBREF 4K4W B 583 617 PDB 4K4W 4K4W 583 617 DBREF 4K4W F 583 617 PDB 4K4W 4K4W 583 617 DBREF 4K4W C 684 701 PDB 4K4W 4K4W 684 701 DBREF 4K4W G 684 701 PDB 4K4W 4K4W 684 701 SEQADV 4K4W ALA A 290 UNP P03300 CYS 2038 ENGINEERED MUTATION SEQADV 4K4W ASP A 446 UNP P03300 LEU 2194 ENGINEERED MUTATION SEQADV 4K4W GLY A 462 UNP P03300 EXPRESSION TAG SEQADV 4K4W SER A 463 UNP P03300 EXPRESSION TAG SEQADV 4K4W SER A 464 UNP P03300 EXPRESSION TAG SEQADV 4K4W SER A 465 UNP P03300 EXPRESSION TAG SEQADV 4K4W HIS A 466 UNP P03300 EXPRESSION TAG SEQADV 4K4W HIS A 467 UNP P03300 EXPRESSION TAG SEQADV 4K4W HIS A 468 UNP P03300 EXPRESSION TAG SEQADV 4K4W HIS A 469 UNP P03300 EXPRESSION TAG SEQADV 4K4W HIS A 470 UNP P03300 EXPRESSION TAG SEQADV 4K4W HIS A 471 UNP P03300 EXPRESSION TAG SEQADV 4K4W ALA E 290 UNP P03300 CYS 2038 ENGINEERED MUTATION SEQADV 4K4W ASP E 446 UNP P03300 LEU 2194 ENGINEERED MUTATION SEQADV 4K4W GLY E 462 UNP P03300 EXPRESSION TAG SEQADV 4K4W SER E 463 UNP P03300 EXPRESSION TAG SEQADV 4K4W SER E 464 UNP P03300 EXPRESSION TAG SEQADV 4K4W SER E 465 UNP P03300 EXPRESSION TAG SEQADV 4K4W HIS E 466 UNP P03300 EXPRESSION TAG SEQADV 4K4W HIS E 467 UNP P03300 EXPRESSION TAG SEQADV 4K4W HIS E 468 UNP P03300 EXPRESSION TAG SEQADV 4K4W HIS E 469 UNP P03300 EXPRESSION TAG SEQADV 4K4W HIS E 470 UNP P03300 EXPRESSION TAG SEQADV 4K4W HIS E 471 UNP P03300 EXPRESSION TAG SEQRES 1 A 471 GLY GLU ILE GLN TRP MET ARG PRO SER LYS GLU VAL GLY SEQRES 2 A 471 TYR PRO ILE ILE ASN ALA PRO SER LYS THR LYS LEU GLU SEQRES 3 A 471 PRO SER ALA PHE HIS TYR VAL PHE GLU GLY VAL LYS GLU SEQRES 4 A 471 PRO ALA VAL LEU THR LYS ASN ASP PRO ARG LEU LYS THR SEQRES 5 A 471 ASP PHE GLU GLU ALA ILE PHE SER LYS TYR VAL GLY ASN SEQRES 6 A 471 LYS ILE THR GLU VAL ASP GLU TYR MET LYS GLU ALA VAL SEQRES 7 A 471 ASP HIS TYR ALA GLY GLN LEU MET SER LEU ASP ILE ASN SEQRES 8 A 471 THR GLU GLN MET CYS LEU GLU ASP ALA MET TYR GLY THR SEQRES 9 A 471 ASP GLY LEU GLU ALA LEU ASP LEU SER THR SER ALA GLY SEQRES 10 A 471 TYR PRO TYR VAL ALA MET GLY LYS LYS LYS ARG ASP ILE SEQRES 11 A 471 LEU ASN LYS GLN THR ARG ASP THR LYS GLU MET GLN LYS SEQRES 12 A 471 LEU LEU ASP THR TYR GLY ILE ASN LEU PRO LEU VAL THR SEQRES 13 A 471 TYR VAL LYS ASP GLU LEU ARG SER LYS THR LYS VAL GLU SEQRES 14 A 471 GLN GLY LYS SER ARG LEU ILE GLU ALA SER SER LEU ASN SEQRES 15 A 471 ASP SER VAL ALA MET ARG MET ALA PHE GLY ASN LEU TYR SEQRES 16 A 471 ALA ALA PHE HIS LYS ASN PRO GLY VAL ILE THR GLY SER SEQRES 17 A 471 ALA VAL GLY CYS ASP PRO ASP LEU PHE TRP SER LYS ILE SEQRES 18 A 471 PRO VAL LEU MET GLU GLU LYS LEU PHE ALA PHE ASP TYR SEQRES 19 A 471 THR GLY TYR ASP ALA SER LEU SER PRO ALA TRP PHE GLU SEQRES 20 A 471 ALA LEU LYS MET VAL LEU GLU LYS ILE GLY PHE GLY ASP SEQRES 21 A 471 ARG VAL ASP TYR ILE ASP TYR LEU ASN HIS SER HIS HIS SEQRES 22 A 471 LEU TYR LYS ASN LYS THR TYR CYS VAL LYS GLY GLY MET SEQRES 23 A 471 PRO SER GLY ALA SER GLY THR SER ILE PHE ASN SER MET SEQRES 24 A 471 ILE ASN ASN LEU ILE ILE ARG THR LEU LEU LEU LYS THR SEQRES 25 A 471 TYR LYS GLY ILE ASP LEU ASP HIS LEU LYS MET ILE ALA SEQRES 26 A 471 TYR GLY ASP ASP VAL ILE ALA SER TYR PRO HIS GLU VAL SEQRES 27 A 471 ASP ALA SER LEU LEU ALA GLN SER GLY LYS ASP TYR GLY SEQRES 28 A 471 LEU THR MET THR PRO ALA ASP LYS SER ALA THR PHE GLU SEQRES 29 A 471 THR VAL THR TRP GLU ASN VAL THR PHE LEU LYS ARG PHE SEQRES 30 A 471 PHE ARG ALA ASP GLU LYS TYR PRO PHE LEU ILE HIS PRO SEQRES 31 A 471 VAL MET PRO MET LYS GLU ILE HIS GLU SER ILE ARG TRP SEQRES 32 A 471 THR LYS ASP PRO ARG ASN THR GLN ASP HIS VAL ARG SER SEQRES 33 A 471 LEU CYS LEU LEU ALA TRP HIS ASN GLY GLU GLU GLU TYR SEQRES 34 A 471 ASN LYS PHE LEU ALA LYS ILE ARG SER VAL PRO ILE GLY SEQRES 35 A 471 ARG ALA LEU ASP LEU PRO GLU TYR SER THR LEU TYR ARG SEQRES 36 A 471 ARG TRP LEU ASP SER PHE GLY SER SER SER HIS HIS HIS SEQRES 37 A 471 HIS HIS HIS SEQRES 1 B 35 G G G A G A U G A A A G U SEQRES 2 B 35 C U C C A G G U C U C U C SEQRES 3 B 35 U C G U C G A A A SEQRES 1 C 18 U G U U C G A C G A G A G SEQRES 2 C 18 A G A C C SEQRES 1 E 471 GLY GLU ILE GLN TRP MET ARG PRO SER LYS GLU VAL GLY SEQRES 2 E 471 TYR PRO ILE ILE ASN ALA PRO SER LYS THR LYS LEU GLU SEQRES 3 E 471 PRO SER ALA PHE HIS TYR VAL PHE GLU GLY VAL LYS GLU SEQRES 4 E 471 PRO ALA VAL LEU THR LYS ASN ASP PRO ARG LEU LYS THR SEQRES 5 E 471 ASP PHE GLU GLU ALA ILE PHE SER LYS TYR VAL GLY ASN SEQRES 6 E 471 LYS ILE THR GLU VAL ASP GLU TYR MET LYS GLU ALA VAL SEQRES 7 E 471 ASP HIS TYR ALA GLY GLN LEU MET SER LEU ASP ILE ASN SEQRES 8 E 471 THR GLU GLN MET CYS LEU GLU ASP ALA MET TYR GLY THR SEQRES 9 E 471 ASP GLY LEU GLU ALA LEU ASP LEU SER THR SER ALA GLY SEQRES 10 E 471 TYR PRO TYR VAL ALA MET GLY LYS LYS LYS ARG ASP ILE SEQRES 11 E 471 LEU ASN LYS GLN THR ARG ASP THR LYS GLU MET GLN LYS SEQRES 12 E 471 LEU LEU ASP THR TYR GLY ILE ASN LEU PRO LEU VAL THR SEQRES 13 E 471 TYR VAL LYS ASP GLU LEU ARG SER LYS THR LYS VAL GLU SEQRES 14 E 471 GLN GLY LYS SER ARG LEU ILE GLU ALA SER SER LEU ASN SEQRES 15 E 471 ASP SER VAL ALA MET ARG MET ALA PHE GLY ASN LEU TYR SEQRES 16 E 471 ALA ALA PHE HIS LYS ASN PRO GLY VAL ILE THR GLY SER SEQRES 17 E 471 ALA VAL GLY CYS ASP PRO ASP LEU PHE TRP SER LYS ILE SEQRES 18 E 471 PRO VAL LEU MET GLU GLU LYS LEU PHE ALA PHE ASP TYR SEQRES 19 E 471 THR GLY TYR ASP ALA SER LEU SER PRO ALA TRP PHE GLU SEQRES 20 E 471 ALA LEU LYS MET VAL LEU GLU LYS ILE GLY PHE GLY ASP SEQRES 21 E 471 ARG VAL ASP TYR ILE ASP TYR LEU ASN HIS SER HIS HIS SEQRES 22 E 471 LEU TYR LYS ASN LYS THR TYR CYS VAL LYS GLY GLY MET SEQRES 23 E 471 PRO SER GLY ALA SER GLY THR SER ILE PHE ASN SER MET SEQRES 24 E 471 ILE ASN ASN LEU ILE ILE ARG THR LEU LEU LEU LYS THR SEQRES 25 E 471 TYR LYS GLY ILE ASP LEU ASP HIS LEU LYS MET ILE ALA SEQRES 26 E 471 TYR GLY ASP ASP VAL ILE ALA SER TYR PRO HIS GLU VAL SEQRES 27 E 471 ASP ALA SER LEU LEU ALA GLN SER GLY LYS ASP TYR GLY SEQRES 28 E 471 LEU THR MET THR PRO ALA ASP LYS SER ALA THR PHE GLU SEQRES 29 E 471 THR VAL THR TRP GLU ASN VAL THR PHE LEU LYS ARG PHE SEQRES 30 E 471 PHE ARG ALA ASP GLU LYS TYR PRO PHE LEU ILE HIS PRO SEQRES 31 E 471 VAL MET PRO MET LYS GLU ILE HIS GLU SER ILE ARG TRP SEQRES 32 E 471 THR LYS ASP PRO ARG ASN THR GLN ASP HIS VAL ARG SER SEQRES 33 E 471 LEU CYS LEU LEU ALA TRP HIS ASN GLY GLU GLU GLU TYR SEQRES 34 E 471 ASN LYS PHE LEU ALA LYS ILE ARG SER VAL PRO ILE GLY SEQRES 35 E 471 ARG ALA LEU ASP LEU PRO GLU TYR SER THR LEU TYR ARG SEQRES 36 E 471 ARG TRP LEU ASP SER PHE GLY SER SER SER HIS HIS HIS SEQRES 37 E 471 HIS HIS HIS SEQRES 1 G 18 U G U U C G A C G A G A G SEQRES 2 G 18 A G A C C SEQRES 1 F 35 G G G A G A U G A A A G U SEQRES 2 F 35 C U C C A G G U C U C U C SEQRES 3 F 35 U C G U C G A A A FORMUL 7 HOH *109(H2 O) HELIX 1 1 SER A 9 GLY A 13 1 5 HELIX 2 2 ASP A 53 SER A 60 1 8 HELIX 3 3 ASP A 71 SER A 87 1 17 HELIX 4 4 CYS A 96 GLY A 103 1 8 HELIX 5 5 LYS A 126 ILE A 130 5 5 HELIX 6 6 THR A 138 GLY A 149 1 12 HELIX 7 7 LYS A 165 GLN A 170 1 6 HELIX 8 8 SER A 180 ASN A 201 1 22 HELIX 9 9 ASP A 213 TRP A 218 1 6 HELIX 10 10 LYS A 220 MET A 225 1 6 HELIX 11 11 GLY A 236 LEU A 241 1 6 HELIX 12 12 SER A 242 ILE A 256 1 15 HELIX 13 13 PHE A 258 VAL A 262 5 5 HELIX 14 14 ASP A 263 ASN A 269 1 7 HELIX 15 15 GLY A 292 LYS A 311 1 20 HELIX 16 16 ASP A 317 LEU A 321 5 5 HELIX 17 17 ASP A 339 ASP A 349 1 11 HELIX 18 18 PRO A 393 ARG A 402 1 10 HELIX 19 19 ASP A 406 ARG A 408 5 3 HELIX 20 20 ASN A 409 TRP A 422 1 14 HELIX 21 21 GLY A 425 SER A 438 1 14 HELIX 22 22 ILE A 441 LEU A 445 5 5 HELIX 23 23 GLU A 449 ASP A 459 1 11 HELIX 24 24 SER E 9 GLY E 13 1 5 HELIX 25 25 ASP E 53 SER E 60 1 8 HELIX 26 26 ASP E 71 SER E 87 1 17 HELIX 27 27 CYS E 96 GLY E 103 1 8 HELIX 28 28 LYS E 126 ILE E 130 5 5 HELIX 29 29 THR E 138 GLY E 149 1 12 HELIX 30 30 SER E 164 GLN E 170 1 7 HELIX 31 31 SER E 180 ASN E 201 1 22 HELIX 32 32 ASP E 213 TRP E 218 1 6 HELIX 33 33 LYS E 220 MET E 225 1 6 HELIX 34 34 GLY E 236 LEU E 241 1 6 HELIX 35 35 SER E 242 ILE E 256 1 15 HELIX 36 36 PHE E 258 VAL E 262 5 5 HELIX 37 37 ASP E 263 ASN E 269 1 7 HELIX 38 38 GLY E 292 TYR E 313 1 22 HELIX 39 39 ASP E 317 LEU E 321 5 5 HELIX 40 40 ASP E 339 ASP E 349 1 11 HELIX 41 41 PRO E 393 ARG E 402 1 10 HELIX 42 42 ASP E 406 ARG E 408 5 3 HELIX 43 43 ASN E 409 TRP E 422 1 14 HELIX 44 44 GLY E 425 SER E 438 1 14 HELIX 45 45 ILE E 441 LEU E 445 5 5 HELIX 46 46 GLU E 449 ASP E 459 1 11 SHEET 1 A 5 GLU A 2 PRO A 8 0 SHEET 2 A 5 LYS A 278 LYS A 283 -1 O CYS A 281 N GLN A 4 SHEET 3 A 5 HIS A 270 TYR A 275 -1 N TYR A 275 O LYS A 278 SHEET 4 A 5 LEU A 154 VAL A 158 1 N THR A 156 O LEU A 274 SHEET 5 A 5 LEU A 175 ALA A 178 -1 O ALA A 178 N VAL A 155 SHEET 1 B 2 GLU A 26 PRO A 27 0 SHEET 2 B 2 TRP A 403 THR A 404 -1 O THR A 404 N GLU A 26 SHEET 1 C 2 LYS A 38 PRO A 40 0 SHEET 2 C 2 LEU A 162 SER A 164 -1 O ARG A 163 N GLU A 39 SHEET 1 D 3 LYS A 228 PHE A 230 0 SHEET 2 D 3 ASP A 329 TYR A 334 -1 O TYR A 334 N LYS A 228 SHEET 3 D 3 LYS A 322 TYR A 326 -1 N LYS A 322 O SER A 333 SHEET 1 E 2 PHE A 232 TYR A 234 0 SHEET 2 E 2 MET A 354 PRO A 356 -1 O THR A 355 N ASP A 233 SHEET 1 F 2 PHE A 377 ALA A 380 0 SHEET 2 F 2 ILE A 388 VAL A 391 -1 O HIS A 389 N ARG A 379 SHEET 1 G 5 GLU E 2 PRO E 8 0 SHEET 2 G 5 LYS E 278 LYS E 283 -1 O CYS E 281 N GLN E 4 SHEET 3 G 5 HIS E 270 TYR E 275 -1 N TYR E 275 O LYS E 278 SHEET 4 G 5 LEU E 154 VAL E 158 1 N THR E 156 O LEU E 274 SHEET 5 G 5 LEU E 175 ALA E 178 -1 O ALA E 178 N VAL E 155 SHEET 1 H 2 GLU E 26 PRO E 27 0 SHEET 2 H 2 TRP E 403 THR E 404 -1 O THR E 404 N GLU E 26 SHEET 1 I 2 GLU E 39 PRO E 40 0 SHEET 2 I 2 LEU E 162 ARG E 163 -1 O ARG E 163 N GLU E 39 SHEET 1 J 3 LYS E 228 PHE E 230 0 SHEET 2 J 3 ASP E 329 TYR E 334 -1 O TYR E 334 N LYS E 228 SHEET 3 J 3 LYS E 322 TYR E 326 -1 N LYS E 322 O SER E 333 SHEET 1 K 2 PHE E 232 THR E 235 0 SHEET 2 K 2 THR E 353 PRO E 356 -1 O THR E 353 N THR E 235 SHEET 1 L 2 PHE E 377 ALA E 380 0 SHEET 2 L 2 ILE E 388 VAL E 391 -1 O HIS E 389 N ARG E 379 CISPEP 1 TYR A 118 PRO A 119 0 5.46 CISPEP 2 TYR E 118 PRO E 119 0 5.21 CRYST1 64.487 64.367 102.285 73.65 73.56 72.20 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015507 -0.004979 -0.003594 0.00000 SCALE2 0.000000 0.016317 -0.003567 0.00000 SCALE3 0.000000 0.000000 0.010434 0.00000