HEADER TRANSFERASE 16-APR-13 4K73 TITLE X-RAY CRYSTAL STRUCTURE OF AN L,D-TRANSPEPTIDASE FROM MYCOBACTERIUM TITLE 2 TUBERCULOSIS H37RV COMPND MOL_ID: 1; COMPND 2 MOLECULE: L,D-TRANSPEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: RVBD_1433; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, NIAID, NATIONAL INSTITUTE OF ALLERGY AND KEYWDS 2 INFECTIOUS DISEASES, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE, SSGCID, L, D-TRANSPEPTIDASE, TRANSPEPTIDASE, KEYWDS 4 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 28-FEB-24 4K73 1 REMARK SEQADV LINK REVDAT 1 12-JUN-13 4K73 0 JRNL AUTH C.M.LUKACS,J.ABENDROTH,T.E.EDWARDS,D.LORIMER JRNL TITL X-RAY CRYSTAL STRUCTURE OF AN L,D-TRANSPEPTIDASE FROM JRNL TITL 2 MYCOBACTERIUM TUBERCULOSIS H37RV (CASP TARGET) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 26663 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1416 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1950 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 106 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1644 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 252 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.95000 REMARK 3 B22 (A**2) : -0.35000 REMARK 3 B33 (A**2) : 1.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.106 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.105 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.872 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1738 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1576 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2391 ; 1.712 ; 1.940 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3624 ; 0.929 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 227 ; 6.300 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 67 ;25.807 ;23.134 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 233 ;12.272 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;16.744 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 271 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2006 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 393 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 905 ; 0.922 ; 1.362 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 904 ; 0.922 ; 1.361 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1133 ; 1.547 ; 2.035 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 833 ; 1.094 ; 1.467 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 33 A 271 REMARK 3 ORIGIN FOR THE GROUP (A): -9.2092 2.3378 -10.9587 REMARK 3 T TENSOR REMARK 3 T11: 0.0438 T22: 0.0374 REMARK 3 T33: 0.0414 T12: -0.0146 REMARK 3 T13: 0.0106 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 1.6972 L22: 0.1601 REMARK 3 L33: 0.5965 L12: -0.1221 REMARK 3 L13: 0.3693 L23: -0.1030 REMARK 3 S TENSOR REMARK 3 S11: -0.0244 S12: 0.2222 S13: -0.0422 REMARK 3 S21: -0.0641 S22: 0.0159 S23: -0.0377 REMARK 3 S31: -0.0092 S32: 0.0023 S33: 0.0085 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4K73 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000078973. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JAN-13; 02-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; N REMARK 200 RADIATION SOURCE : ALS; ROTATING ANODE REMARK 200 BEAMLINE : 5.0.1; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.977408; 1.54 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; RIGAKU SATURN REMARK 200 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28136 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.2300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MCSG1 E9: 0.2 M CALCIUM CHLORIDE, 20% REMARK 280 PEG3350, PH 7.50, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.12000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.58500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.22000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.58500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.12000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.22000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -2 REMARK 465 ALA A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 MET A 6 REMARK 465 GLY A 7 REMARK 465 THR A 8 REMARK 465 LEU A 9 REMARK 465 GLU A 10 REMARK 465 ALA A 11 REMARK 465 GLN A 12 REMARK 465 THR A 13 REMARK 465 GLN A 14 REMARK 465 GLY A 15 REMARK 465 PRO A 16 REMARK 465 GLY A 17 REMARK 465 SER A 18 REMARK 465 MET A 19 REMARK 465 ALA A 20 REMARK 465 GLY A 21 REMARK 465 PRO A 22 REMARK 465 ALA A 23 REMARK 465 ASP A 24 REMARK 465 ILE A 25 REMARK 465 HIS A 26 REMARK 465 LEU A 27 REMARK 465 VAL A 28 REMARK 465 ALA A 29 REMARK 465 ALA A 30 REMARK 465 LYS A 31 REMARK 465 GLN A 32 REMARK 465 PRO A 151 REMARK 465 PRO A 152 REMARK 465 LEU A 153 REMARK 465 PRO A 154 REMARK 465 ALA A 155 REMARK 465 PRO A 156 REMARK 465 HIS A 157 REMARK 465 HIS A 158 REMARK 465 SER A 199 REMARK 465 VAL A 200 REMARK 465 GLY A 201 REMARK 465 ILE A 202 REMARK 465 PRO A 203 REMARK 465 VAL A 204 REMARK 465 ASP A 205 REMARK 465 ASP A 206 REMARK 465 PRO A 207 REMARK 465 ASP A 208 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 33 OG REMARK 470 ARG A 45 CG CD NE CZ NH1 NH2 REMARK 470 SER A 118 OG REMARK 470 ARG A 159 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 164 CG CD OE1 OE2 REMARK 470 GLU A 176 CG CD OE1 OE2 REMARK 470 ARG A 223 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 240 CG CD OE1 OE2 REMARK 470 GLU A 271 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 69 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 102 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 34 26.10 -144.24 REMARK 500 LEU A 239 -57.40 -125.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 48 O REMARK 620 2 ASP A 262 OD2 79.9 REMARK 620 3 ASP A 262 OD1 133.2 53.5 REMARK 620 4 HOH A 403 O 153.1 126.7 73.1 REMARK 620 5 HOH A 406 O 87.7 88.2 85.8 89.2 REMARK 620 6 HOH A 410 O 95.2 94.7 93.9 87.1 176.3 REMARK 620 7 HOH A 421 O 75.2 154.6 150.0 78.0 86.0 92.4 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-MYTUD.18255.A RELATED DB: TARGETTRACK DBREF 4K73 A 20 271 UNP O06825 O06825_MYCTU 20 271 SEQADV 4K73 MET A -2 UNP O06825 EXPRESSION TAG SEQADV 4K73 ALA A -1 UNP O06825 EXPRESSION TAG SEQADV 4K73 HIS A 0 UNP O06825 EXPRESSION TAG SEQADV 4K73 HIS A 1 UNP O06825 EXPRESSION TAG SEQADV 4K73 HIS A 2 UNP O06825 EXPRESSION TAG SEQADV 4K73 HIS A 3 UNP O06825 EXPRESSION TAG SEQADV 4K73 HIS A 4 UNP O06825 EXPRESSION TAG SEQADV 4K73 HIS A 5 UNP O06825 EXPRESSION TAG SEQADV 4K73 MET A 6 UNP O06825 EXPRESSION TAG SEQADV 4K73 GLY A 7 UNP O06825 EXPRESSION TAG SEQADV 4K73 THR A 8 UNP O06825 EXPRESSION TAG SEQADV 4K73 LEU A 9 UNP O06825 EXPRESSION TAG SEQADV 4K73 GLU A 10 UNP O06825 EXPRESSION TAG SEQADV 4K73 ALA A 11 UNP O06825 EXPRESSION TAG SEQADV 4K73 GLN A 12 UNP O06825 EXPRESSION TAG SEQADV 4K73 THR A 13 UNP O06825 EXPRESSION TAG SEQADV 4K73 GLN A 14 UNP O06825 EXPRESSION TAG SEQADV 4K73 GLY A 15 UNP O06825 EXPRESSION TAG SEQADV 4K73 PRO A 16 UNP O06825 EXPRESSION TAG SEQADV 4K73 GLY A 17 UNP O06825 EXPRESSION TAG SEQADV 4K73 SER A 18 UNP O06825 EXPRESSION TAG SEQADV 4K73 MET A 19 UNP O06825 EXPRESSION TAG SEQRES 1 A 274 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 274 ALA GLN THR GLN GLY PRO GLY SER MET ALA GLY PRO ALA SEQRES 3 A 274 ASP ILE HIS LEU VAL ALA ALA LYS GLN SER TYR GLY PHE SEQRES 4 A 274 ALA VAL ALA SER VAL LEU PRO THR ARG GLY GLN VAL VAL SEQRES 5 A 274 GLY VAL ALA HIS PRO VAL VAL VAL THR PHE SER ALA PRO SEQRES 6 A 274 ILE THR ASN PRO ALA ASN ARG HIS ALA ALA GLU ARG ALA SEQRES 7 A 274 VAL GLU VAL LYS SER THR PRO ALA MET THR GLY LYS PHE SEQRES 8 A 274 GLU TRP LEU ASP ASN ASP VAL VAL GLN TRP VAL PRO ASP SEQRES 9 A 274 ARG PHE TRP PRO ALA HIS SER THR VAL GLU LEU SER VAL SEQRES 10 A 274 GLY SER LEU SER SER ASP PHE LYS THR GLY PRO ALA VAL SEQRES 11 A 274 VAL GLY VAL ALA SER ILE SER GLN HIS THR PHE THR VAL SEQRES 12 A 274 SER ILE ASP GLY VAL GLU GLU GLY PRO PRO PRO PRO LEU SEQRES 13 A 274 PRO ALA PRO HIS HIS ARG VAL HIS PHE GLY GLU ASP GLY SEQRES 14 A 274 VAL MET PRO ALA SER MET GLY ARG PRO GLU TYR PRO THR SEQRES 15 A 274 PRO VAL GLY SER TYR THR VAL LEU SER LYS GLU ARG SER SEQRES 16 A 274 VAL ILE MET ASP SER SER SER VAL GLY ILE PRO VAL ASP SEQRES 17 A 274 ASP PRO ASP GLY TYR ARG LEU SER VAL ASP TYR ALA VAL SEQRES 18 A 274 ARG ILE THR SER ARG GLY LEU TYR VAL HIS SER ALA PRO SEQRES 19 A 274 TRP ALA LEU PRO ALA LEU GLY LEU GLU ASN VAL SER HIS SEQRES 20 A 274 GLY CYS ILE SER LEU SER ARG GLU ASP ALA GLU TRP TYR SEQRES 21 A 274 TYR ASN ALA VAL ASP ILE GLY ASP PRO VAL ILE VAL GLN SEQRES 22 A 274 GLU HET CA A 301 1 HETNAM CA CALCIUM ION FORMUL 2 CA CA 2+ FORMUL 3 HOH *252(H2 O) HELIX 1 1 ASN A 65 ALA A 67 5 3 HELIX 2 2 ASN A 68 VAL A 76 1 9 HELIX 3 3 PRO A 231 LEU A 237 5 7 HELIX 4 4 SER A 250 VAL A 261 1 12 SHEET 1 A 4 VAL A 38 LEU A 42 0 SHEET 2 A 4 VAL A 55 PHE A 59 -1 O THR A 58 N SER A 40 SHEET 3 A 4 VAL A 95 PRO A 100 -1 O VAL A 96 N VAL A 57 SHEET 4 A 4 GLY A 86 ASP A 92 -1 N GLU A 89 O GLN A 97 SHEET 1 B 4 VAL A 48 VAL A 49 0 SHEET 2 B 4 LEU A 117 THR A 123 1 O LYS A 122 N VAL A 49 SHEET 3 B 4 THR A 109 VAL A 114 -1 N LEU A 112 O SER A 119 SHEET 4 B 4 VAL A 78 THR A 81 -1 N LYS A 79 O SER A 113 SHEET 1 C 3 VAL A 145 GLU A 146 0 SHEET 2 C 3 THR A 137 ILE A 142 -1 N ILE A 142 O VAL A 145 SHEET 3 C 3 VAL A 167 PRO A 169 -1 O MET A 168 N PHE A 138 SHEET 1 D 5 VAL A 145 GLU A 146 0 SHEET 2 D 5 THR A 137 ILE A 142 -1 N ILE A 142 O VAL A 145 SHEET 3 D 5 VAL A 127 SER A 132 -1 N SER A 132 O THR A 137 SHEET 4 D 5 PRO A 266 GLN A 270 1 O ILE A 268 N ALA A 131 SHEET 5 D 5 GLY A 182 THR A 185 -1 N TYR A 184 O VAL A 267 SHEET 1 E 4 SER A 188 ASP A 196 0 SHEET 2 E 4 ARG A 211 ARG A 219 -1 O LEU A 212 N MET A 195 SHEET 3 E 4 TYR A 226 SER A 229 -1 O VAL A 227 N VAL A 218 SHEET 4 E 4 ILE A 247 LEU A 249 1 O ILE A 247 N TYR A 226 LINK O VAL A 48 CA CA A 301 1555 1555 2.41 LINK OD2 ASP A 262 CA CA A 301 1555 1555 2.47 LINK OD1 ASP A 262 CA CA A 301 1555 1555 2.48 LINK CA CA A 301 O HOH A 403 1555 1555 2.44 LINK CA CA A 301 O HOH A 406 1555 1555 2.46 LINK CA CA A 301 O HOH A 410 1555 1555 2.34 LINK CA CA A 301 O HOH A 421 1555 1555 2.42 CISPEP 1 LEU A 42 PRO A 43 0 -6.12 CISPEP 2 THR A 81 PRO A 82 0 -0.91 SITE 1 AC1 6 VAL A 48 ASP A 262 HOH A 403 HOH A 406 SITE 2 AC1 6 HOH A 410 HOH A 421 CRYST1 44.240 46.440 111.170 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022604 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021533 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008995 0.00000