HEADER LIPID TRANSPORT 17-APR-13 4K85 TITLE CRYSTAL STRUCTURE OF HUMAN CERAMIDE-1-PHOSPHATE TRANSFER PROTEIN TITLE 2 (CPTP) IN COMPLEX WITH 12:0 CERAMIDE-1-PHOSPHATE (12:0-C1P) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOLIPID TRANSFER PROTEIN DOMAIN-CONTAINING PROTEIN 1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GLTPD1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-SUMO KEYWDS LIPID TRANSFER PROTEIN, GLTP-FOLD, CPTP, C1P, CERAMIDE-1-PHOSPHATE, KEYWDS 2 PROTEIN-LIPID COMPLEX, EICOSANOID, LIPID TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR D.K.SIMANSHU,R.E.BROWN,D.J.PATEL REVDAT 5 06-NOV-24 4K85 1 REMARK REVDAT 4 03-APR-24 4K85 1 REMARK REVDAT 3 29-NOV-23 4K85 1 REMARK SEQADV REVDAT 2 11-SEP-13 4K85 1 JRNL REVDAT 1 17-JUL-13 4K85 0 JRNL AUTH D.K.SIMANSHU,R.K.KAMLEKAR,D.S.WIJESINGHE,X.ZOU,X.ZHAI, JRNL AUTH 2 S.K.MISHRA,J.G.MOLOTKOVSKY,L.MALININA,E.H.HINCHCLIFFE, JRNL AUTH 3 C.E.CHALFANT,R.E.BROWN,D.J.PATEL JRNL TITL NON-VESICULAR TRAFFICKING BY A CERAMIDE-1-PHOSPHATE TRANSFER JRNL TITL 2 PROTEIN REGULATES EICOSANOIDS. JRNL REF NATURE V. 500 463 2013 JRNL REFN ISSN 0028-0836 JRNL PMID 23863933 JRNL DOI 10.1038/NATURE12332 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6_289 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.140 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 67553 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 3402 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.2360 - 5.4734 0.99 2827 159 0.1810 0.1978 REMARK 3 2 5.4734 - 4.3481 1.00 2802 150 0.1674 0.1878 REMARK 3 3 4.3481 - 3.7996 1.00 2810 173 0.1486 0.1918 REMARK 3 4 3.7996 - 3.4527 1.00 2827 116 0.1677 0.2098 REMARK 3 5 3.4527 - 3.2055 1.00 2815 137 0.1787 0.2322 REMARK 3 6 3.2055 - 3.0166 0.99 2794 142 0.1906 0.2305 REMARK 3 7 3.0166 - 2.8657 0.99 2780 143 0.1894 0.2439 REMARK 3 8 2.8657 - 2.7410 0.99 2767 153 0.1904 0.2365 REMARK 3 9 2.7410 - 2.6355 0.98 2735 149 0.1860 0.2908 REMARK 3 10 2.6355 - 2.5446 0.99 2743 150 0.1891 0.2765 REMARK 3 11 2.5446 - 2.4651 0.98 2726 161 0.1893 0.2360 REMARK 3 12 2.4651 - 2.3947 0.98 2738 139 0.1834 0.2386 REMARK 3 13 2.3947 - 2.3317 0.97 2723 133 0.1704 0.2070 REMARK 3 14 2.3317 - 2.2748 0.97 2762 150 0.1756 0.2179 REMARK 3 15 2.2748 - 2.2231 0.96 2647 155 0.1781 0.2703 REMARK 3 16 2.2231 - 2.1758 0.96 2716 130 0.1815 0.2622 REMARK 3 17 2.1758 - 2.1323 0.96 2680 142 0.1825 0.2384 REMARK 3 18 2.1323 - 2.0920 0.95 2620 163 0.1835 0.2493 REMARK 3 19 2.0920 - 2.0547 0.93 2620 128 0.1925 0.2394 REMARK 3 20 2.0547 - 2.0199 0.92 2573 129 0.1899 0.2536 REMARK 3 21 2.0199 - 1.9873 0.90 2552 125 0.1995 0.2580 REMARK 3 22 1.9873 - 1.9567 0.88 2423 130 0.2095 0.2765 REMARK 3 23 1.9567 - 1.9279 0.82 2262 134 0.2275 0.3120 REMARK 3 24 1.9279 - 1.9008 0.77 2209 111 0.2337 0.2874 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 40.01 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.38660 REMARK 3 B22 (A**2) : 10.05230 REMARK 3 B33 (A**2) : -5.66560 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.42130 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6968 REMARK 3 ANGLE : 0.971 9424 REMARK 3 CHIRALITY : 0.062 1055 REMARK 3 PLANARITY : 0.005 1192 REMARK 3 DIHEDRAL : 16.772 2667 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4K85 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000079011. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0750 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70265 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: CPTP IN COMPLEX WITH 2:0 CERAMIDE-1-PHOSPHATE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM CHLORIDE, 0.1 M HEPES REMARK 280 PH 7.0, 20% PEG6000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 66.33850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 ASP A 3 REMARK 465 SER A 4 REMARK 465 GLU A 5 REMARK 465 THR A 6 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 ASP B 3 REMARK 465 SER B 4 REMARK 465 GLU B 5 REMARK 465 THR B 6 REMARK 465 GLY B 7 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 ASP C 2 REMARK 465 ASP C 3 REMARK 465 SER C 4 REMARK 465 GLU C 5 REMARK 465 THR C 6 REMARK 465 SER D 0 REMARK 465 MET D 1 REMARK 465 ASP D 2 REMARK 465 ASP D 3 REMARK 465 SER D 4 REMARK 465 GLU D 5 REMARK 465 THR D 6 REMARK 465 GLY D 7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG C 96 CG CD NE CZ NH1 NH2 REMARK 470 PHE D 8 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG D 96 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 144 CB - CA - C ANGL. DEV. = 13.8 DEGREES REMARK 500 SER B 98 N - CA - CB ANGL. DEV. = -9.8 DEGREES REMARK 500 SER C 98 N - CA - CB ANGL. DEV. = -9.3 DEGREES REMARK 500 ALA D 144 CB - CA - C ANGL. DEV. = 10.8 DEGREES REMARK 500 SER D 145 N - CA - CB ANGL. DEV. = -9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 98 -152.23 -160.47 REMARK 500 HIS A 99 -8.21 -54.10 REMARK 500 SER A 145 -90.33 -115.46 REMARK 500 GLU B 95 -41.59 -130.36 REMARK 500 ARG B 97 86.94 -66.88 REMARK 500 SER B 98 -66.49 -136.55 REMARK 500 SER B 145 -95.44 -117.40 REMARK 500 PRO B 166 -176.85 -59.97 REMARK 500 SER C 98 -81.05 -129.06 REMARK 500 SER C 145 -89.02 -129.95 REMARK 500 ARG D 97 98.91 -67.67 REMARK 500 SER D 98 -92.57 -116.03 REMARK 500 SER D 145 -84.58 -128.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PZ A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PZ B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PZ C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PZ D 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4K80 RELATED DB: PDB REMARK 900 RELATED ID: 4K84 RELATED DB: PDB REMARK 900 RELATED ID: 4K8N RELATED DB: PDB REMARK 900 RELATED ID: 4KF6 RELATED DB: PDB REMARK 900 RELATED ID: 4KBR RELATED DB: PDB REMARK 900 RELATED ID: 4KBS RELATED DB: PDB DBREF 4K85 A 1 214 UNP Q5TA50 GLTD1_HUMAN 1 214 DBREF 4K85 B 1 214 UNP Q5TA50 GLTD1_HUMAN 1 214 DBREF 4K85 C 1 214 UNP Q5TA50 GLTD1_HUMAN 1 214 DBREF 4K85 D 1 214 UNP Q5TA50 GLTD1_HUMAN 1 214 SEQADV 4K85 SER A 0 UNP Q5TA50 EXPRESSION TAG SEQADV 4K85 SER B 0 UNP Q5TA50 EXPRESSION TAG SEQADV 4K85 SER C 0 UNP Q5TA50 EXPRESSION TAG SEQADV 4K85 SER D 0 UNP Q5TA50 EXPRESSION TAG SEQRES 1 A 215 SER MET ASP ASP SER GLU THR GLY PHE ASN LEU LYS VAL SEQRES 2 A 215 VAL LEU VAL SER PHE LYS GLN CYS LEU ASP GLU LYS GLU SEQRES 3 A 215 GLU VAL LEU LEU ASP PRO TYR ILE ALA SER TRP LYS GLY SEQRES 4 A 215 LEU VAL ARG PHE LEU ASN SER LEU GLY THR ILE PHE SER SEQRES 5 A 215 PHE ILE SER LYS ASP VAL VAL SER LYS LEU ARG ILE MET SEQRES 6 A 215 GLU ARG LEU ARG GLY GLY PRO GLN SER GLU HIS TYR ARG SEQRES 7 A 215 SER LEU GLN ALA MET VAL ALA HIS GLU LEU SER ASN ARG SEQRES 8 A 215 LEU VAL ASP LEU GLU ARG ARG SER HIS HIS PRO GLU SER SEQRES 9 A 215 GLY CYS ARG THR VAL LEU ARG LEU HIS ARG ALA LEU HIS SEQRES 10 A 215 TRP LEU GLN LEU PHE LEU GLU GLY LEU ARG THR SER PRO SEQRES 11 A 215 GLU ASP ALA ARG THR SER ALA LEU CYS ALA ASP SER TYR SEQRES 12 A 215 ASN ALA SER LEU ALA ALA TYR HIS PRO TRP VAL VAL ARG SEQRES 13 A 215 ARG ALA VAL THR VAL ALA PHE CYS THR LEU PRO THR ARG SEQRES 14 A 215 GLU VAL PHE LEU GLU ALA MET ASN VAL GLY PRO PRO GLU SEQRES 15 A 215 GLN ALA VAL GLN MET LEU GLY GLU ALA LEU PRO PHE ILE SEQRES 16 A 215 GLN ARG VAL TYR ASN VAL SER GLN LYS LEU TYR ALA GLU SEQRES 17 A 215 HIS SER LEU LEU ASP LEU PRO SEQRES 1 B 215 SER MET ASP ASP SER GLU THR GLY PHE ASN LEU LYS VAL SEQRES 2 B 215 VAL LEU VAL SER PHE LYS GLN CYS LEU ASP GLU LYS GLU SEQRES 3 B 215 GLU VAL LEU LEU ASP PRO TYR ILE ALA SER TRP LYS GLY SEQRES 4 B 215 LEU VAL ARG PHE LEU ASN SER LEU GLY THR ILE PHE SER SEQRES 5 B 215 PHE ILE SER LYS ASP VAL VAL SER LYS LEU ARG ILE MET SEQRES 6 B 215 GLU ARG LEU ARG GLY GLY PRO GLN SER GLU HIS TYR ARG SEQRES 7 B 215 SER LEU GLN ALA MET VAL ALA HIS GLU LEU SER ASN ARG SEQRES 8 B 215 LEU VAL ASP LEU GLU ARG ARG SER HIS HIS PRO GLU SER SEQRES 9 B 215 GLY CYS ARG THR VAL LEU ARG LEU HIS ARG ALA LEU HIS SEQRES 10 B 215 TRP LEU GLN LEU PHE LEU GLU GLY LEU ARG THR SER PRO SEQRES 11 B 215 GLU ASP ALA ARG THR SER ALA LEU CYS ALA ASP SER TYR SEQRES 12 B 215 ASN ALA SER LEU ALA ALA TYR HIS PRO TRP VAL VAL ARG SEQRES 13 B 215 ARG ALA VAL THR VAL ALA PHE CYS THR LEU PRO THR ARG SEQRES 14 B 215 GLU VAL PHE LEU GLU ALA MET ASN VAL GLY PRO PRO GLU SEQRES 15 B 215 GLN ALA VAL GLN MET LEU GLY GLU ALA LEU PRO PHE ILE SEQRES 16 B 215 GLN ARG VAL TYR ASN VAL SER GLN LYS LEU TYR ALA GLU SEQRES 17 B 215 HIS SER LEU LEU ASP LEU PRO SEQRES 1 C 215 SER MET ASP ASP SER GLU THR GLY PHE ASN LEU LYS VAL SEQRES 2 C 215 VAL LEU VAL SER PHE LYS GLN CYS LEU ASP GLU LYS GLU SEQRES 3 C 215 GLU VAL LEU LEU ASP PRO TYR ILE ALA SER TRP LYS GLY SEQRES 4 C 215 LEU VAL ARG PHE LEU ASN SER LEU GLY THR ILE PHE SER SEQRES 5 C 215 PHE ILE SER LYS ASP VAL VAL SER LYS LEU ARG ILE MET SEQRES 6 C 215 GLU ARG LEU ARG GLY GLY PRO GLN SER GLU HIS TYR ARG SEQRES 7 C 215 SER LEU GLN ALA MET VAL ALA HIS GLU LEU SER ASN ARG SEQRES 8 C 215 LEU VAL ASP LEU GLU ARG ARG SER HIS HIS PRO GLU SER SEQRES 9 C 215 GLY CYS ARG THR VAL LEU ARG LEU HIS ARG ALA LEU HIS SEQRES 10 C 215 TRP LEU GLN LEU PHE LEU GLU GLY LEU ARG THR SER PRO SEQRES 11 C 215 GLU ASP ALA ARG THR SER ALA LEU CYS ALA ASP SER TYR SEQRES 12 C 215 ASN ALA SER LEU ALA ALA TYR HIS PRO TRP VAL VAL ARG SEQRES 13 C 215 ARG ALA VAL THR VAL ALA PHE CYS THR LEU PRO THR ARG SEQRES 14 C 215 GLU VAL PHE LEU GLU ALA MET ASN VAL GLY PRO PRO GLU SEQRES 15 C 215 GLN ALA VAL GLN MET LEU GLY GLU ALA LEU PRO PHE ILE SEQRES 16 C 215 GLN ARG VAL TYR ASN VAL SER GLN LYS LEU TYR ALA GLU SEQRES 17 C 215 HIS SER LEU LEU ASP LEU PRO SEQRES 1 D 215 SER MET ASP ASP SER GLU THR GLY PHE ASN LEU LYS VAL SEQRES 2 D 215 VAL LEU VAL SER PHE LYS GLN CYS LEU ASP GLU LYS GLU SEQRES 3 D 215 GLU VAL LEU LEU ASP PRO TYR ILE ALA SER TRP LYS GLY SEQRES 4 D 215 LEU VAL ARG PHE LEU ASN SER LEU GLY THR ILE PHE SER SEQRES 5 D 215 PHE ILE SER LYS ASP VAL VAL SER LYS LEU ARG ILE MET SEQRES 6 D 215 GLU ARG LEU ARG GLY GLY PRO GLN SER GLU HIS TYR ARG SEQRES 7 D 215 SER LEU GLN ALA MET VAL ALA HIS GLU LEU SER ASN ARG SEQRES 8 D 215 LEU VAL ASP LEU GLU ARG ARG SER HIS HIS PRO GLU SER SEQRES 9 D 215 GLY CYS ARG THR VAL LEU ARG LEU HIS ARG ALA LEU HIS SEQRES 10 D 215 TRP LEU GLN LEU PHE LEU GLU GLY LEU ARG THR SER PRO SEQRES 11 D 215 GLU ASP ALA ARG THR SER ALA LEU CYS ALA ASP SER TYR SEQRES 12 D 215 ASN ALA SER LEU ALA ALA TYR HIS PRO TRP VAL VAL ARG SEQRES 13 D 215 ARG ALA VAL THR VAL ALA PHE CYS THR LEU PRO THR ARG SEQRES 14 D 215 GLU VAL PHE LEU GLU ALA MET ASN VAL GLY PRO PRO GLU SEQRES 15 D 215 GLN ALA VAL GLN MET LEU GLY GLU ALA LEU PRO PHE ILE SEQRES 16 D 215 GLN ARG VAL TYR ASN VAL SER GLN LYS LEU TYR ALA GLU SEQRES 17 D 215 HIS SER LEU LEU ASP LEU PRO HET 1PZ A 301 38 HET 1PZ B 301 38 HET 1PZ C 301 38 HET 1PZ D 301 38 HETNAM 1PZ (2S,3R,4E)-2-(DODECANOYLAMINO)-3-HYDROXYOCTADEC-4-EN-1- HETNAM 2 1PZ YL DIHYDROGEN PHOSPHATE FORMUL 5 1PZ 4(C30 H60 N O6 P) FORMUL 9 HOH *684(H2 O) HELIX 1 1 ASN A 9 PHE A 17 1 9 HELIX 2 2 LYS A 18 LEU A 21 5 4 HELIX 3 3 LEU A 28 LEU A 46 1 19 HELIX 4 4 GLY A 47 PHE A 52 5 6 HELIX 5 5 ILE A 53 GLY A 69 1 17 HELIX 6 6 GLN A 72 ARG A 77 5 6 HELIX 7 7 SER A 78 ASN A 89 1 12 HELIX 8 8 SER A 103 SER A 128 1 26 HELIX 9 9 ARG A 133 SER A 145 1 13 HELIX 10 10 LEU A 146 HIS A 150 5 5 HELIX 11 11 PRO A 151 PHE A 162 1 12 HELIX 12 12 CYS A 163 LEU A 165 5 3 HELIX 13 13 THR A 167 ALA A 174 1 8 HELIX 14 14 PRO A 179 HIS A 208 1 30 HELIX 15 15 ASN B 9 SER B 16 1 8 HELIX 16 16 PHE B 17 LEU B 21 5 5 HELIX 17 17 LEU B 28 SER B 45 1 18 HELIX 18 18 GLY B 47 GLY B 69 1 23 HELIX 19 19 GLN B 72 ARG B 77 5 6 HELIX 20 20 SER B 78 ASN B 89 1 12 HELIX 21 21 SER B 103 SER B 128 1 26 HELIX 22 22 ARG B 133 SER B 145 1 13 HELIX 23 23 LEU B 146 HIS B 150 5 5 HELIX 24 24 PRO B 151 ALA B 161 1 11 HELIX 25 25 PHE B 162 LEU B 165 5 4 HELIX 26 26 THR B 167 ALA B 174 1 8 HELIX 27 27 PRO B 179 HIS B 208 1 30 HELIX 28 28 ASN C 9 GLN C 19 1 11 HELIX 29 29 LEU C 28 SER C 45 1 18 HELIX 30 30 LEU C 46 GLY C 47 5 2 HELIX 31 31 THR C 48 ILE C 49 5 2 HELIX 32 32 PHE C 50 GLY C 69 1 20 HELIX 33 33 GLN C 72 ARG C 77 5 6 HELIX 34 34 SER C 78 ASN C 89 1 12 HELIX 35 35 SER C 103 THR C 127 1 25 HELIX 36 36 ARG C 133 SER C 145 1 13 HELIX 37 37 LEU C 146 HIS C 150 5 5 HELIX 38 38 PRO C 151 CYS C 163 1 13 HELIX 39 39 THR C 167 ALA C 174 1 8 HELIX 40 40 PRO C 179 HIS C 208 1 30 HELIX 41 41 ASN D 9 PHE D 17 1 9 HELIX 42 42 LYS D 18 LEU D 21 5 4 HELIX 43 43 LEU D 28 LEU D 46 1 19 HELIX 44 44 GLY D 47 PHE D 52 5 6 HELIX 45 45 ILE D 53 GLY D 69 1 17 HELIX 46 46 GLN D 72 ARG D 77 5 6 HELIX 47 47 SER D 78 ASN D 89 1 12 HELIX 48 48 SER D 103 THR D 127 1 25 HELIX 49 49 ARG D 133 SER D 145 1 13 HELIX 50 50 LEU D 146 HIS D 150 5 5 HELIX 51 51 PRO D 151 CYS D 163 1 13 HELIX 52 52 THR D 167 MET D 175 1 9 HELIX 53 53 PRO D 179 HIS D 208 1 30 SSBOND 1 CYS A 163 CYS D 163 1555 1555 2.04 SITE 1 AC1 19 LEU A 43 ILE A 53 ASP A 56 VAL A 57 SITE 2 AC1 19 LYS A 60 ARG A 106 ARG A 110 TRP A 117 SITE 3 AC1 19 LEU A 118 HIS A 150 VAL A 154 PHE A 162 SITE 4 AC1 19 HOH A 428 HOH A 466 HOH A 476 HOH A 479 SITE 5 AC1 19 HOH A 481 HOH A 506 VAL B 153 SITE 1 AC2 21 ILE A 49 VAL A 153 LEU B 43 ILE B 53 SITE 2 AC2 21 ASP B 56 LYS B 60 ARG B 106 ARG B 110 SITE 3 AC2 21 ALA B 114 TRP B 117 PHE B 121 LEU B 146 SITE 4 AC2 21 HIS B 150 VAL B 153 HOH B 412 HOH B 418 SITE 5 AC2 21 HOH B 448 HOH B 456 HOH B 462 HOH B 465 SITE 6 AC2 21 HOH B 555 SITE 1 AC3 18 ILE C 53 ASP C 56 LYS C 60 ARG C 106 SITE 2 AC3 18 ARG C 110 ALA C 114 TRP C 117 CYS C 138 SITE 3 AC3 18 HIS C 150 HOH C 449 HOH C 459 HOH C 469 SITE 4 AC3 18 HOH C 471 HOH C 534 ILE D 49 PHE D 50 SITE 5 AC3 18 VAL D 153 ALA D 157 SITE 1 AC4 20 VAL C 153 PHE D 42 LEU D 46 PHE D 50 SITE 2 AC4 20 ILE D 53 ASP D 56 LYS D 60 ARG D 106 SITE 3 AC4 20 ARG D 110 TRP D 117 TYR D 142 LEU D 146 SITE 4 AC4 20 HIS D 150 PHE D 171 HOH D 416 HOH D 433 SITE 5 AC4 20 HOH D 458 HOH D 460 HOH D 487 HOH D 524 CRYST1 56.191 132.677 62.107 90.00 96.98 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017796 0.000000 0.002179 0.00000 SCALE2 0.000000 0.007537 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016221 0.00000