HEADER OXIDOREDUCTASE 18-APR-13 4K8D TITLE CRYSTAL STRUCTURE OF THE C558(464)A/C559(465)A DOUBLE MUTANT OF TN501 TITLE 2 MERA IN COMPLEX WITH NADPH AND HG2+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: MERCURIC REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 96-561; COMPND 5 SYNONYM: HG(II) REDUCTASE; COMPND 6 EC: 1.16.1.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: MERA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET3D:CMERA KEYWDS MERCURIC ION REDUCTASE, FLAVOENZYME, MERCURIC ION COMPLEX, NADPH KEYWDS 2 COMPLEX, TERNARY COMPLEX, REDUCED FORM, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.DONG,M.FALKOWSKI,M.MALONE,S.M.MILLER,E.F.PAI REVDAT 2 20-SEP-23 4K8D 1 REMARK SEQADV REVDAT 1 22-MAY-13 4K8D 0 JRNL AUTH A.DONG,M.FALKOWSKI,M.MALONE,S.M.MILLER,E.F.PAI JRNL TITL CRYSTAL STRUCTURE OF THE C136(42)A/C141(47)A DOUBLE MUTANT JRNL TITL 2 OF TN501 MERA IN COMPLEX WITH NADPH AND HG2+ JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 44048 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.100 REMARK 3 FREE R VALUE TEST SET COUNT : 923 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.86 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3195 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.2530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3400 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 135 REMARK 3 SOLVENT ATOMS : 390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.86000 REMARK 3 B22 (A**2) : 0.86000 REMARK 3 B33 (A**2) : -1.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.118 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.114 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.347 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3633 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3456 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4984 ; 1.415 ; 1.999 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7919 ; 0.749 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 483 ; 5.646 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 143 ;36.195 ;24.056 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 548 ;12.876 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;16.624 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 598 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4161 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 791 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1881 ; 1.420 ; 2.550 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1880 ; 1.417 ; 2.548 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2354 ; 2.310 ; 3.818 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1752 ; 1.766 ; 2.722 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4K8D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000079019. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45046 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : 0.06400 REMARK 200 FOR THE DATA SET : 32.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.56100 REMARK 200 R SYM FOR SHELL (I) : 0.56100 REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: GLRF REMARK 200 STARTING MODEL: 3GRS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0M AMMONIA SULFATE, 0.1M TRIS, PH REMARK 280 9.4, VAPOR DIFFUSION HANGING DROP, TEMPERATURE 295K, VAPOR REMARK 280 DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.59500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.46100 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.46100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 102.89250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.46100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.46100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.29750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.46100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.46100 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 102.89250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.46100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.46100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 34.29750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 68.59500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -112.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 68.59500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 UNK UNX A 506 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 669 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 2 CG CD OE1 OE2 REMARK 470 LYS A 99 CD CE NZ REMARK 470 LYS A 159 CE NZ REMARK 470 LYS A 201 CD CE NZ REMARK 470 ARG A 274 CD NE CZ NH1 NH2 REMARK 470 GLN A 295 CG CD OE1 NE2 REMARK 470 GLU A 399 CG CD OE1 OE2 REMARK 470 ARG A 403 CD NE CZ NH1 NH2 REMARK 470 VAL A 459 CG1 CG2 REMARK 470 LYS A 460 CE NZ REMARK 470 GLN A 461 CG CD OE1 NE2 REMARK 470 LEU A 462 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD2 LEU A 258 UNK UNX A 517 1.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 42 CA - CB - SG ANGL. DEV. = -14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 12 22.51 -144.21 REMARK 500 TYR A 100 -72.14 -127.09 REMARK 500 PRO A 154 45.26 -82.04 REMARK 500 SER A 184 25.54 -152.55 REMARK 500 SER A 185 -152.65 -125.26 REMARK 500 ASN A 208 -120.68 -120.99 REMARK 500 HIS A 255 0.48 -64.00 REMARK 500 PHE A 348 47.01 -90.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP A 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4K7Z RELATED DB: PDB DBREF 4K8D A 2 467 UNP P00392 MERA_PSEAI 96 561 SEQADV 4K8D MET A 1 UNP P00392 EXPRESSION TAG SEQADV 4K8D ALA A 464 UNP P00392 CYS 558 ENGINEERED MUTATION SEQADV 4K8D ALA A 465 UNP P00392 CYS 559 ENGINEERED MUTATION SEQRES 1 A 467 MET GLU PRO PRO VAL GLN VAL ALA VAL ILE GLY SER GLY SEQRES 2 A 467 GLY ALA ALA MET ALA ALA ALA LEU LYS ALA VAL GLU GLN SEQRES 3 A 467 GLY ALA GLN VAL THR LEU ILE GLU ARG GLY THR ILE GLY SEQRES 4 A 467 GLY THR CYS VAL ASN VAL GLY CYS VAL PRO SER LYS ILE SEQRES 5 A 467 MET ILE ARG ALA ALA HIS ILE ALA HIS LEU ARG ARG GLU SEQRES 6 A 467 SER PRO PHE ASP GLY GLY ILE ALA ALA THR VAL PRO THR SEQRES 7 A 467 ILE ASP ARG SER LYS LEU LEU ALA GLN GLN GLN ALA ARG SEQRES 8 A 467 VAL ASP GLU LEU ARG HIS ALA LYS TYR GLU GLY ILE LEU SEQRES 9 A 467 GLY GLY ASN PRO ALA ILE THR VAL VAL HIS GLY GLU ALA SEQRES 10 A 467 ARG PHE LYS ASP ASP GLN SER LEU THR VAL ARG LEU ASN SEQRES 11 A 467 GLU GLY GLY GLU ARG VAL VAL MET PHE ASP ARG CYS LEU SEQRES 12 A 467 VAL ALA THR GLY ALA SER PRO ALA VAL PRO PRO ILE PRO SEQRES 13 A 467 GLY LEU LYS GLU SER PRO TYR TRP THR SER THR GLU ALA SEQRES 14 A 467 LEU ALA SER ASP THR ILE PRO GLU ARG LEU ALA VAL ILE SEQRES 15 A 467 GLY SER SER VAL VAL ALA LEU GLU LEU ALA GLN ALA PHE SEQRES 16 A 467 ALA ARG LEU GLY SER LYS VAL THR VAL LEU ALA ARG ASN SEQRES 17 A 467 THR LEU PHE PHE ARG GLU ASP PRO ALA ILE GLY GLU ALA SEQRES 18 A 467 VAL THR ALA ALA PHE ARG ALA GLU GLY ILE GLU VAL LEU SEQRES 19 A 467 GLU HIS THR GLN ALA SER GLN VAL ALA HIS MET ASP GLY SEQRES 20 A 467 GLU PHE VAL LEU THR THR THR HIS GLY GLU LEU ARG ALA SEQRES 21 A 467 ASP LYS LEU LEU VAL ALA THR GLY ARG THR PRO ASN THR SEQRES 22 A 467 ARG SER LEU ALA LEU ASP ALA ALA GLY VAL THR VAL ASN SEQRES 23 A 467 ALA GLN GLY ALA ILE VAL ILE ASP GLN GLY MET ARG THR SEQRES 24 A 467 SER ASN PRO ASN ILE TYR ALA ALA GLY ASP CYS THR ASP SEQRES 25 A 467 GLN PRO GLN PHE VAL TYR VAL ALA ALA ALA ALA GLY THR SEQRES 26 A 467 ARG ALA ALA ILE ASN MET THR GLY GLY ASP ALA ALA LEU SEQRES 27 A 467 ASP LEU THR ALA MET PRO ALA VAL VAL PHE THR ASP PRO SEQRES 28 A 467 GLN VAL ALA THR VAL GLY TYR SER GLU ALA GLU ALA HIS SEQRES 29 A 467 HIS ASP GLY ILE GLU THR ASP SER ARG THR LEU THR LEU SEQRES 30 A 467 ASP ASN VAL PRO ARG ALA LEU ALA ASN PHE ASP THR ARG SEQRES 31 A 467 GLY PHE ILE LYS LEU VAL ILE GLU GLU GLY SER HIS ARG SEQRES 32 A 467 LEU ILE GLY VAL GLN ALA VAL ALA PRO GLU ALA GLY GLU SEQRES 33 A 467 LEU ILE GLN THR ALA ALA LEU ALA ILE ARG ASN ARG MET SEQRES 34 A 467 THR VAL GLN GLU LEU ALA ASP GLN LEU PHE PRO TYR LEU SEQRES 35 A 467 THR MET VAL GLU GLY LEU LYS LEU ALA ALA GLN THR PHE SEQRES 36 A 467 ASN LYS ASP VAL LYS GLN LEU SER ALA ALA ALA GLY HET SO4 A 501 5 HET SO4 A 502 5 HET GOL A 503 6 HET FAD A 504 53 HET NDP A 505 48 HET UNX A 506 1 HET UNX A 507 1 HET UNX A 508 1 HET UNX A 509 1 HET UNX A 510 1 HET UNX A 511 1 HET UNX A 512 1 HET UNX A 513 1 HET UNX A 514 1 HET UNX A 515 1 HET UNX A 516 1 HET UNX A 517 1 HET UNX A 518 1 HET UNX A 519 1 HET UNX A 520 1 HET UNX A 521 1 HET UNX A 522 1 HET UNX A 523 1 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE HETNAM UNX UNKNOWN ATOM OR ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 GOL C3 H8 O3 FORMUL 5 FAD C27 H33 N9 O15 P2 FORMUL 6 NDP C21 H30 N7 O17 P3 FORMUL 7 UNX 18(X) FORMUL 25 HOH *390(H2 O) HELIX 1 1 GLY A 13 GLN A 26 1 14 HELIX 2 2 GLY A 39 GLY A 46 1 8 HELIX 3 3 GLY A 46 GLU A 65 1 20 HELIX 4 4 ASP A 80 TYR A 100 1 21 HELIX 5 5 TYR A 100 GLY A 106 1 7 HELIX 6 6 THR A 165 SER A 172 1 8 HELIX 7 7 SER A 185 LEU A 198 1 14 HELIX 8 8 ASP A 215 GLU A 229 1 15 HELIX 9 9 ALA A 277 GLY A 282 5 6 HELIX 10 10 PHE A 316 THR A 332 1 17 HELIX 11 11 SER A 359 ASP A 366 1 8 HELIX 12 12 VAL A 380 ASN A 386 1 7 HELIX 13 13 GLU A 413 ASN A 427 1 15 HELIX 14 14 THR A 430 ASP A 436 1 7 HELIX 15 15 VAL A 445 THR A 454 1 10 HELIX 16 16 ASP A 458 LEU A 462 5 5 SHEET 1 A 7 GLU A 134 MET A 138 0 SHEET 2 A 7 SER A 124 LEU A 129 -1 N VAL A 127 O ARG A 135 SHEET 3 A 7 ILE A 110 ASP A 121 -1 N LYS A 120 O SER A 124 SHEET 4 A 7 GLN A 29 GLU A 34 1 N LEU A 32 O VAL A 113 SHEET 5 A 7 GLN A 6 ILE A 10 1 N VAL A 9 O THR A 31 SHEET 6 A 7 ARG A 141 VAL A 144 1 O LEU A 143 N ALA A 8 SHEET 7 A 7 ILE A 304 ALA A 306 1 O TYR A 305 N CYS A 142 SHEET 1 B 2 ALA A 148 PRO A 150 0 SHEET 2 B 2 ARG A 269 PRO A 271 -1 O THR A 270 N SER A 149 SHEET 1 C 4 GLU A 232 LEU A 234 0 SHEET 2 C 4 LYS A 201 LEU A 205 1 N VAL A 204 O LEU A 234 SHEET 3 C 4 ARG A 178 ILE A 182 1 N VAL A 181 O LEU A 205 SHEET 4 C 4 LYS A 262 VAL A 265 1 O LEU A 264 N ALA A 180 SHEET 1 D 3 ALA A 239 MET A 245 0 SHEET 2 D 3 GLU A 248 THR A 253 -1 O VAL A 250 N ALA A 243 SHEET 3 D 3 GLY A 256 ALA A 260 -1 O LEU A 258 N LEU A 251 SHEET 1 E 5 PRO A 344 VAL A 347 0 SHEET 2 E 5 GLN A 352 GLY A 357 -1 O VAL A 353 N VAL A 347 SHEET 3 E 5 LEU A 404 ALA A 411 -1 O ALA A 409 N ALA A 354 SHEET 4 E 5 PHE A 392 GLU A 398 -1 N LYS A 394 O GLN A 408 SHEET 5 E 5 THR A 370 THR A 376 -1 N LEU A 375 O ILE A 393 SSBOND 1 CYS A 42 CYS A 47 1555 1555 2.28 CISPEP 1 ASP A 350 PRO A 351 0 1.20 SITE 1 AC1 7 ARG A 35 ASN A 272 THR A 273 ARG A 274 SITE 2 AC1 7 SER A 275 HOH A 730 HOH A 896 SITE 1 AC2 7 TRP A 164 SER A 172 LYS A 262 HOH A 729 SITE 2 AC2 7 HOH A 839 HOH A 901 HOH A 936 SITE 1 AC3 6 GLN A 6 GLN A 29 THR A 31 THR A 111 SITE 2 AC3 6 ARG A 135 HOH A 741 SITE 1 AC4 39 ILE A 10 GLY A 11 GLY A 13 GLY A 14 SITE 2 AC4 39 ALA A 15 ILE A 33 GLU A 34 ARG A 35 SITE 3 AC4 39 GLY A 40 THR A 41 CYS A 42 GLY A 46 SITE 4 AC4 39 CYS A 47 SER A 50 LYS A 51 GLY A 115 SITE 5 AC4 39 GLU A 116 ALA A 117 ALA A 145 THR A 146 SITE 6 AC4 39 GLY A 147 ARG A 269 LEU A 276 GLY A 308 SITE 7 AC4 39 ASP A 309 GLN A 315 PHE A 316 VAL A 317 SITE 8 AC4 39 TYR A 318 PHE A 348 NDP A 505 HOH A 609 SITE 9 AC4 39 HOH A 671 HOH A 673 HOH A 702 HOH A 703 SITE 10 AC4 39 HOH A 707 HOH A 730 HOH A 759 SITE 1 AC5 30 PRO A 153 SER A 184 SER A 185 VAL A 186 SITE 2 AC5 30 VAL A 187 GLU A 190 ARG A 207 ASN A 208 SITE 3 AC5 30 PHE A 212 ARG A 213 THR A 267 GLY A 268 SITE 4 AC5 30 GLN A 315 PHE A 316 VAL A 346 PHE A 348 SITE 5 AC5 30 FAD A 504 HOH A 633 HOH A 641 HOH A 642 SITE 6 AC5 30 HOH A 670 HOH A 672 HOH A 688 HOH A 691 SITE 7 AC5 30 HOH A 695 HOH A 715 HOH A 750 HOH A 780 SITE 8 AC5 30 HOH A 933 HOH A 969 CRYST1 86.922 86.922 137.190 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011505 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011505 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007289 0.00000