HEADER TRANSFERASE/DNA 19-APR-13 4K97 TITLE STRUCTURE OF TERNARY COMPLEX OF CGAS WITH DSDNA AND BOUND ATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIC GMP-AMP SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN, UNP RESIDUES 147-507; COMPND 5 SYNONYM: CGAMP SYNTHASE, CGAS, M-CGAS, MAB-21 DOMAIN-CONTAINING COMPND 6 PROTEIN 1; COMPND 7 EC: 2.7.7.-; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DNA-F; COMPND 11 CHAIN: D; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA-R; COMPND 15 CHAIN: E; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: MB21D1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 OTHER_DETAILS: THIS SEQUENCE WAS SYNTHESIZED BY REGULAR PROTOCOL; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: THIS SEQUENCE WAS SYNTHESIZED BY REGULAR PROTOCOL KEYWDS NUCLEOTIDYLTRANSFERASE FOLD, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.GAO,Y.WU,D.J.PATEL REVDAT 3 28-FEB-24 4K97 1 REMARK SEQADV LINK REVDAT 2 28-AUG-13 4K97 1 JRNL REVDAT 1 15-MAY-13 4K97 0 JRNL AUTH P.GAO,M.ASCANO,Y.WU,W.BARCHET,B.L.GAFFNEY,T.ZILLINGER, JRNL AUTH 2 A.A.SERGANOV,Y.LIU,R.A.JONES,G.HARTMANN,T.TUSCHL,D.J.PATEL JRNL TITL CYCLIC [G(2',5')PA(3',5')P] IS THE METAZOAN SECOND MESSENGER JRNL TITL 2 PRODUCED BY DNA-ACTIVATED CYCLIC GMP-AMP SYNTHASE. JRNL REF CELL(CAMBRIDGE,MASS.) V. 153 1094 2013 JRNL REFN ISSN 0092-8674 JRNL PMID 23647843 JRNL DOI 10.1016/J.CELL.2013.04.046 REMARK 2 REMARK 2 RESOLUTION. 2.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 22099 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.6970 - 5.8056 1.00 1536 153 0.1847 0.2006 REMARK 3 2 5.8056 - 4.6091 0.99 1457 145 0.1514 0.2061 REMARK 3 3 4.6091 - 4.0268 1.00 1455 145 0.1514 0.1778 REMARK 3 4 4.0268 - 3.6588 1.00 1443 143 0.1752 0.2078 REMARK 3 5 3.6588 - 3.3966 0.99 1437 143 0.1880 0.2364 REMARK 3 6 3.3966 - 3.1964 1.00 1413 141 0.2105 0.2932 REMARK 3 7 3.1964 - 3.0363 1.00 1457 144 0.2335 0.2908 REMARK 3 8 3.0363 - 2.9042 1.00 1402 140 0.2362 0.2630 REMARK 3 9 2.9042 - 2.7924 1.00 1427 142 0.2377 0.3096 REMARK 3 10 2.7924 - 2.6960 1.00 1424 142 0.2389 0.2907 REMARK 3 11 2.6960 - 2.6117 1.00 1424 142 0.2322 0.3115 REMARK 3 12 2.6117 - 2.5371 1.00 1409 139 0.2435 0.2793 REMARK 3 13 2.5371 - 2.4703 1.00 1427 143 0.2446 0.3430 REMARK 3 14 2.4703 - 2.4100 0.99 1388 138 0.2507 0.2797 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3691 REMARK 3 ANGLE : 1.190 5097 REMARK 3 CHIRALITY : 0.071 551 REMARK 3 PLANARITY : 0.004 532 REMARK 3 DIHEDRAL : 22.127 1458 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 149 THROUGH 183 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7922 222.8185 171.9899 REMARK 3 T TENSOR REMARK 3 T11: 0.2238 T22: 0.2711 REMARK 3 T33: 0.4443 T12: -0.0469 REMARK 3 T13: 0.0208 T23: 0.0630 REMARK 3 L TENSOR REMARK 3 L11: 3.0836 L22: 3.9672 REMARK 3 L33: 2.1854 L12: -0.4411 REMARK 3 L13: -0.0686 L23: 0.0926 REMARK 3 S TENSOR REMARK 3 S11: 0.0742 S12: 0.0485 S13: 0.7112 REMARK 3 S21: -0.1109 S22: -0.0674 S23: 0.2490 REMARK 3 S31: -0.9228 S32: -0.7921 S33: 0.2330 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 184 THROUGH 210 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.7191 213.7096 164.4162 REMARK 3 T TENSOR REMARK 3 T11: 0.4553 T22: 0.4011 REMARK 3 T33: 0.4018 T12: -0.0118 REMARK 3 T13: 0.1026 T23: 0.0398 REMARK 3 L TENSOR REMARK 3 L11: 3.0188 L22: 4.4636 REMARK 3 L33: 4.0619 L12: -1.0103 REMARK 3 L13: -0.4295 L23: 1.3643 REMARK 3 S TENSOR REMARK 3 S11: 0.1523 S12: 0.5118 S13: -0.0118 REMARK 3 S21: -0.5712 S22: -0.1172 S23: -0.0726 REMARK 3 S31: -0.3375 S32: 0.0204 S33: -0.1102 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 211 THROUGH 376 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.7740 204.8325 163.8337 REMARK 3 T TENSOR REMARK 3 T11: 0.3189 T22: 0.3825 REMARK 3 T33: 0.2997 T12: -0.0021 REMARK 3 T13: 0.0747 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 1.3295 L22: 2.7832 REMARK 3 L33: 1.3417 L12: 0.2887 REMARK 3 L13: -0.1481 L23: -0.9343 REMARK 3 S TENSOR REMARK 3 S11: 0.0346 S12: 0.3329 S13: -0.0537 REMARK 3 S21: -0.4354 S22: -0.1339 S23: -0.4134 REMARK 3 S31: -0.0398 S32: 0.2991 S33: 0.0627 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 377 THROUGH 505 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.5301 207.6434 187.8906 REMARK 3 T TENSOR REMARK 3 T11: 0.3041 T22: 0.4171 REMARK 3 T33: 0.2384 T12: -0.0370 REMARK 3 T13: 0.0136 T23: 0.0239 REMARK 3 L TENSOR REMARK 3 L11: 3.5779 L22: 3.0969 REMARK 3 L33: 1.6349 L12: 0.3529 REMARK 3 L13: 0.4423 L23: 1.4149 REMARK 3 S TENSOR REMARK 3 S11: 0.0165 S12: -0.5063 S13: 0.1674 REMARK 3 S21: 0.1023 S22: 0.1330 S23: -0.3973 REMARK 3 S31: -0.0533 S32: 0.5017 S33: -0.1622 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.4378 218.7983 170.6468 REMARK 3 T TENSOR REMARK 3 T11: 0.5936 T22: 0.5080 REMARK 3 T33: 0.4255 T12: 0.0283 REMARK 3 T13: 0.1202 T23: 0.0832 REMARK 3 L TENSOR REMARK 3 L11: 5.3673 L22: 4.9041 REMARK 3 L33: 2.7587 L12: -0.4376 REMARK 3 L13: -1.3307 L23: 1.2363 REMARK 3 S TENSOR REMARK 3 S11: 0.3490 S12: 0.8961 S13: 0.5534 REMARK 3 S21: -0.5655 S22: 0.1246 S23: -0.0994 REMARK 3 S31: -1.0521 S32: -0.6244 S33: -0.4127 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 4 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2218 217.1977 172.0843 REMARK 3 T TENSOR REMARK 3 T11: 0.5132 T22: 0.6833 REMARK 3 T33: 0.4093 T12: -0.0738 REMARK 3 T13: 0.0454 T23: 0.1900 REMARK 3 L TENSOR REMARK 3 L11: 5.3652 L22: 5.3610 REMARK 3 L33: 2.6973 L12: 0.3801 REMARK 3 L13: 0.6597 L23: 1.7170 REMARK 3 S TENSOR REMARK 3 S11: 0.1391 S12: 0.0655 S13: 0.0504 REMARK 3 S21: 0.1731 S22: 0.2165 S23: 0.3172 REMARK 3 S31: 0.5610 S32: -1.3854 S33: -0.2879 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4K97 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000079049. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 7.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9823 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22099 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.410 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.41 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 0.2 M CAAC2, 20% PEG300, REMARK 280 PH 7.7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 43.10200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.68650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 65.76250 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 43.10200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.68650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.76250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 43.10200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.68650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.76250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 43.10200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 49.68650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.76250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 146 REMARK 465 PRO A 147 REMARK 465 ASP A 148 REMARK 465 ARG A 241 REMARK 465 ILE A 242 REMARK 465 PRO A 243 REMARK 465 ARG A 244 REMARK 465 GLY A 245 REMARK 465 ASN A 246 REMARK 465 LYS A 506 REMARK 465 LEU A 507 REMARK 465 DA D 16 REMARK 465 DA D 17 REMARK 465 DT E 1 REMARK 465 DT E 2 REMARK 465 DT E 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 354 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC D 8 O4' - C1' - N1 ANGL. DEV. = 3.9 DEGREES REMARK 500 DC E 7 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA E 14 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 DT E 17 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 207 -59.02 64.92 REMARK 500 TYR A 229 -122.64 55.04 REMARK 500 LEU A 248 21.95 47.11 REMARK 500 TRP A 331 -71.73 -119.78 REMARK 500 ASN A 356 131.57 -34.14 REMARK 500 SER A 357 -76.44 -99.49 REMARK 500 ALA A 417 -6.67 77.44 REMARK 500 SER A 477 171.61 -58.84 REMARK 500 LEU A 480 -54.57 70.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 211 OE2 REMARK 620 2 ASP A 213 OD1 104.1 REMARK 620 3 ASP A 307 OD2 83.4 103.7 REMARK 620 4 ATP A 604 O1A 91.5 83.7 171.8 REMARK 620 5 HOH A 703 O 66.0 160.9 91.7 80.4 REMARK 620 6 HOH A 798 O 160.4 93.9 84.9 98.2 98.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 603 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 211 OE1 REMARK 620 2 ASP A 213 OD2 92.8 REMARK 620 3 ATP A 604 O1B 176.8 89.6 REMARK 620 4 ATP A 604 O2G 100.7 166.5 77.0 REMARK 620 5 ATP A 604 O1A 102.5 86.1 79.8 90.9 REMARK 620 6 HOH A 720 O 83.5 87.1 94.4 94.4 171.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 378 NE2 REMARK 620 2 CYS A 384 SG 114.6 REMARK 620 3 CYS A 385 SG 97.6 136.4 REMARK 620 4 CYS A 392 SG 91.1 99.0 109.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 604 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4K96 RELATED DB: PDB REMARK 900 RELATED ID: 4K8V RELATED DB: PDB REMARK 900 RELATED ID: 4K98 RELATED DB: PDB REMARK 900 RELATED ID: 4K99 RELATED DB: PDB REMARK 900 RELATED ID: 4K9A RELATED DB: PDB REMARK 900 RELATED ID: 4K9B RELATED DB: PDB DBREF 4K97 A 147 507 UNP Q8C6L5 CGAS_MOUSE 147 507 DBREF 4K97 D 1 17 PDB 4K97 4K97 1 17 DBREF 4K97 E 1 17 PDB 4K97 4K97 1 17 SEQADV 4K97 SER A 146 UNP Q8C6L5 EXPRESSION TAG SEQRES 1 A 362 SER PRO ASP LYS LEU LYS LYS VAL LEU ASP LYS LEU ARG SEQRES 2 A 362 LEU LYS ARG LYS ASP ILE SER GLU ALA ALA GLU THR VAL SEQRES 3 A 362 ASN LYS VAL VAL GLU ARG LEU LEU ARG ARG MET GLN LYS SEQRES 4 A 362 ARG GLU SER GLU PHE LYS GLY VAL GLU GLN LEU ASN THR SEQRES 5 A 362 GLY SER TYR TYR GLU HIS VAL LYS ILE SER ALA PRO ASN SEQRES 6 A 362 GLU PHE ASP VAL MET PHE LYS LEU GLU VAL PRO ARG ILE SEQRES 7 A 362 GLU LEU GLN GLU TYR TYR GLU THR GLY ALA PHE TYR LEU SEQRES 8 A 362 VAL LYS PHE LYS ARG ILE PRO ARG GLY ASN PRO LEU SER SEQRES 9 A 362 HIS PHE LEU GLU GLY GLU VAL LEU SER ALA THR LYS MET SEQRES 10 A 362 LEU SER LYS PHE ARG LYS ILE ILE LYS GLU GLU VAL LYS SEQRES 11 A 362 GLU ILE LYS ASP ILE ASP VAL SER VAL GLU LYS GLU LYS SEQRES 12 A 362 PRO GLY SER PRO ALA VAL THR LEU LEU ILE ARG ASN PRO SEQRES 13 A 362 GLU GLU ILE SER VAL ASP ILE ILE LEU ALA LEU GLU SER SEQRES 14 A 362 LYS GLY SER TRP PRO ILE SER THR LYS GLU GLY LEU PRO SEQRES 15 A 362 ILE GLN GLY TRP LEU GLY THR LYS VAL ARG THR ASN LEU SEQRES 16 A 362 ARG ARG GLU PRO PHE TYR LEU VAL PRO LYS ASN ALA LYS SEQRES 17 A 362 ASP GLY ASN SER PHE GLN GLY GLU THR TRP ARG LEU SER SEQRES 18 A 362 PHE SER HIS THR GLU LYS TYR ILE LEU ASN ASN HIS GLY SEQRES 19 A 362 ILE GLU LYS THR CYS CYS GLU SER SER GLY ALA LYS CYS SEQRES 20 A 362 CYS ARG LYS GLU CYS LEU LYS LEU MET LYS TYR LEU LEU SEQRES 21 A 362 GLU GLN LEU LYS LYS GLU PHE GLN GLU LEU ASP ALA PHE SEQRES 22 A 362 CYS SER TYR HIS VAL LYS THR ALA ILE PHE HIS MET TRP SEQRES 23 A 362 THR GLN ASP PRO GLN ASP SER GLN TRP ASP PRO ARG ASN SEQRES 24 A 362 LEU SER SER CYS PHE ASP LYS LEU LEU ALA PHE PHE LEU SEQRES 25 A 362 GLU CYS LEU ARG THR GLU LYS LEU ASP HIS TYR PHE ILE SEQRES 26 A 362 PRO LYS PHE ASN LEU PHE SER GLN GLU LEU ILE ASP ARG SEQRES 27 A 362 LYS SER LYS GLU PHE LEU SER LYS LYS ILE GLU TYR GLU SEQRES 28 A 362 ARG ASN ASN GLY PHE PRO ILE PHE ASP LYS LEU SEQRES 1 D 17 DA DA DA DT DT DG DC DC DG DA DA DG DA SEQRES 2 D 17 DC DG DA DA SEQRES 1 E 17 DT DT DT DC DG DT DC DT DT DC DG DG DC SEQRES 2 E 17 DA DA DT DT HET ZN A 601 1 HET MG A 602 1 HET MG A 603 1 HET ATP A 604 31 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE FORMUL 4 ZN ZN 2+ FORMUL 5 MG 2(MG 2+) FORMUL 7 ATP C10 H16 N5 O13 P3 FORMUL 8 HOH *123(H2 O) HELIX 1 1 LYS A 149 ARG A 158 1 10 HELIX 2 2 LYS A 160 GLN A 183 1 24 HELIX 3 3 SER A 258 LYS A 275 1 18 HELIX 4 4 PRO A 319 LYS A 323 5 5 HELIX 5 5 GLY A 333 ARG A 341 1 9 HELIX 6 6 PHE A 367 ASN A 377 1 11 HELIX 7 7 CYS A 393 PHE A 412 1 20 HELIX 8 8 GLN A 413 ASP A 416 5 4 HELIX 9 9 CYS A 419 ASP A 434 1 16 HELIX 10 10 GLN A 436 ARG A 443 5 8 HELIX 11 11 ASN A 444 THR A 462 1 19 HELIX 12 12 ASP A 482 ASN A 498 1 17 HELIX 13 13 PHE A 501 ASP A 505 5 5 SHEET 1 A 8 GLU A 193 THR A 197 0 SHEET 2 A 8 GLU A 211 GLU A 219 -1 O LYS A 217 N GLU A 193 SHEET 3 A 8 GLU A 303 SER A 314 1 O GLU A 313 N LEU A 218 SHEET 4 A 8 PHE A 345 VAL A 348 -1 O LEU A 347 N LEU A 312 SHEET 5 A 8 TRP A 363 SER A 366 -1 O ARG A 364 N VAL A 348 SHEET 6 A 8 PHE A 234 PHE A 239 -1 N TYR A 235 O TRP A 363 SHEET 7 A 8 VAL A 256 LEU A 257 -1 O LEU A 257 N VAL A 237 SHEET 8 A 8 LEU A 252 GLU A 253 -1 N GLU A 253 O VAL A 256 SHEET 1 B 7 ILE A 223 GLU A 227 0 SHEET 2 B 7 PHE A 234 PHE A 239 -1 O LYS A 238 N GLU A 224 SHEET 3 B 7 TRP A 363 SER A 366 -1 O TRP A 363 N TYR A 235 SHEET 4 B 7 PHE A 345 VAL A 348 -1 N VAL A 348 O ARG A 364 SHEET 5 B 7 GLU A 303 SER A 314 -1 N LEU A 312 O LEU A 347 SHEET 6 B 7 ALA A 293 ARG A 299 -1 N LEU A 296 O VAL A 306 SHEET 7 B 7 ASP A 281 VAL A 284 -1 N SER A 283 O LEU A 297 LINK OE2 GLU A 211 MG MG A 602 1555 1555 2.18 LINK OE1 GLU A 211 MG MG A 603 1555 1555 1.95 LINK OD1 ASP A 213 MG MG A 602 1555 1555 2.13 LINK OD2 ASP A 213 MG MG A 603 1555 1555 2.22 LINK OD2 ASP A 307 MG MG A 602 1555 1555 2.21 LINK NE2 HIS A 378 ZN ZN A 601 1555 1555 2.19 LINK SG CYS A 384 ZN ZN A 601 1555 1555 2.21 LINK SG CYS A 385 ZN ZN A 601 1555 1555 2.30 LINK SG CYS A 392 ZN ZN A 601 1555 1555 2.40 LINK MG MG A 602 O1A ATP A 604 1555 1555 2.43 LINK MG MG A 602 O HOH A 703 1555 1555 2.42 LINK MG MG A 602 O HOH A 798 1555 1555 2.74 LINK MG MG A 603 O1B ATP A 604 1555 1555 2.11 LINK MG MG A 603 O2G ATP A 604 1555 1555 2.12 LINK MG MG A 603 O1A ATP A 604 1555 1555 2.37 LINK MG MG A 603 O HOH A 720 1555 1555 2.42 CISPEP 1 ASN A 300 PRO A 301 0 5.33 CISPEP 2 ASN A 356 SER A 357 0 -8.96 SITE 1 AC1 4 HIS A 378 CYS A 384 CYS A 385 CYS A 392 SITE 1 AC2 6 GLU A 211 ASP A 213 ASP A 307 ATP A 604 SITE 2 AC2 6 HOH A 703 HOH A 798 SITE 1 AC3 4 GLU A 211 ASP A 213 ATP A 604 HOH A 720 SITE 1 AC4 18 SER A 199 GLU A 211 ASP A 213 ARG A 364 SITE 2 AC4 18 SER A 368 GLU A 371 LYS A 402 SER A 420 SITE 3 AC4 18 TYR A 421 LYS A 424 MG A 602 MG A 603 SITE 4 AC4 18 HOH A 719 HOH A 733 HOH A 736 HOH A 742 SITE 5 AC4 18 HOH A 750 HOH A 759 CRYST1 86.204 99.373 131.525 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011600 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010063 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007603 0.00000