HEADER TRANSFERASE/DNA 19-APR-13 4K98 TITLE STRUCTURE OF TERNARY COMPLEX OF CGAS WITH DSDNA AND BOUND 5 -PPPG(2 ,5 TITLE 2 )PG COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIC GMP-AMP SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN, UNP RESIDUES 147-507; COMPND 5 SYNONYM: CGAMP SYNTHASE, CGAS, M-CGAS, MAB-21 DOMAIN-CONTAINING COMPND 6 PROTEIN 1; COMPND 7 EC: 2.7.7.-; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DNA-F; COMPND 11 CHAIN: D; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA-R; COMPND 15 CHAIN: E; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: MB21D1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 OTHER_DETAILS: THIS SEQUENCE WAS SYNTHESIZED BY REGULAR PROTOCOL; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630; SOURCE 17 OTHER_DETAILS: THIS SEQUENCE WAS SYNTHESIZED BY REGULAR PROTOCOL KEYWDS NUCLEOTIDYLTRANSFERASE FOLD, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.GAO,Y.WU,D.J.PATEL REVDAT 4 16-OCT-24 4K98 1 SOURCE REMARK HET HETNAM REVDAT 4 2 1 FORMUL LINK SITE ATOM REVDAT 3 28-FEB-24 4K98 1 REMARK SEQADV LINK REVDAT 2 28-AUG-13 4K98 1 JRNL REVDAT 1 15-MAY-13 4K98 0 JRNL AUTH P.GAO,M.ASCANO,Y.WU,W.BARCHET,B.L.GAFFNEY,T.ZILLINGER, JRNL AUTH 2 A.A.SERGANOV,Y.LIU,R.A.JONES,G.HARTMANN,T.TUSCHL,D.J.PATEL JRNL TITL CYCLIC [G(2',5')PA(3',5')P] IS THE METAZOAN SECOND MESSENGER JRNL TITL 2 PRODUCED BY DNA-ACTIVATED CYCLIC GMP-AMP SYNTHASE. JRNL REF CELL(CAMBRIDGE,MASS.) V. 153 1094 2013 JRNL REFN ISSN 0092-8674 JRNL PMID 23647843 JRNL DOI 10.1016/J.CELL.2013.04.046 REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.45 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 41225 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.850 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.4613 - 4.6720 0.98 2928 149 0.1506 0.1874 REMARK 3 2 4.6720 - 3.7092 1.00 2888 147 0.1306 0.1576 REMARK 3 3 3.7092 - 3.2406 1.00 2873 147 0.1409 0.1738 REMARK 3 4 3.2406 - 2.9444 1.00 2845 144 0.1636 0.2044 REMARK 3 5 2.9444 - 2.7334 1.00 2810 144 0.1656 0.2186 REMARK 3 6 2.7334 - 2.5723 1.00 2841 144 0.1670 0.2305 REMARK 3 7 2.5723 - 2.4435 1.00 2814 144 0.1643 0.2188 REMARK 3 8 2.4435 - 2.3371 1.00 2825 144 0.1597 0.2166 REMARK 3 9 2.3371 - 2.2472 1.00 2813 144 0.1589 0.2060 REMARK 3 10 2.2472 - 2.1696 1.00 2784 141 0.1665 0.2030 REMARK 3 11 2.1696 - 2.1018 1.00 2836 144 0.1760 0.2423 REMARK 3 12 2.1018 - 2.0417 1.00 2794 143 0.1935 0.2705 REMARK 3 13 2.0417 - 1.9880 0.98 2734 140 0.2254 0.2545 REMARK 3 14 1.9880 - 1.9400 0.88 2441 124 0.2913 0.3341 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 3714 REMARK 3 ANGLE : 2.183 5127 REMARK 3 CHIRALITY : 0.191 558 REMARK 3 PLANARITY : 0.008 539 REMARK 3 DIHEDRAL : 21.132 1468 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 149 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): 97.6694 318.1835 175.6293 REMARK 3 T TENSOR REMARK 3 T11: 0.1748 T22: 0.1345 REMARK 3 T33: 0.4138 T12: -0.0830 REMARK 3 T13: 0.0327 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 2.1415 L22: 2.6453 REMARK 3 L33: 5.7350 L12: -0.0623 REMARK 3 L13: 0.0480 L23: 0.0146 REMARK 3 S TENSOR REMARK 3 S11: 0.1112 S12: -0.0231 S13: 0.5854 REMARK 3 S21: -0.0410 S22: 0.0588 S23: 0.2183 REMARK 3 S31: -0.7855 S32: -0.3583 S33: -0.1229 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 183 THROUGH 276 ) REMARK 3 ORIGIN FOR THE GROUP (A): 106.6573 301.6235 161.7090 REMARK 3 T TENSOR REMARK 3 T11: 0.3485 T22: 0.2727 REMARK 3 T33: 0.2027 T12: 0.0029 REMARK 3 T13: 0.0451 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 2.5387 L22: 2.4729 REMARK 3 L33: 1.5396 L12: -0.3950 REMARK 3 L13: -0.5266 L23: -0.7422 REMARK 3 S TENSOR REMARK 3 S11: 0.1241 S12: 0.5177 S13: -0.0813 REMARK 3 S21: -0.7901 S22: -0.1380 S23: -0.1465 REMARK 3 S31: 0.1597 S32: 0.1097 S33: 0.0202 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 277 THROUGH 393 ) REMARK 3 ORIGIN FOR THE GROUP (A): 102.6748 300.9883 173.5169 REMARK 3 T TENSOR REMARK 3 T11: 0.1457 T22: 0.1419 REMARK 3 T33: 0.1846 T12: 0.0000 REMARK 3 T13: 0.0146 T23: 0.0052 REMARK 3 L TENSOR REMARK 3 L11: 1.2088 L22: 1.7042 REMARK 3 L33: 1.2594 L12: 0.4021 REMARK 3 L13: -0.1573 L23: -0.4467 REMARK 3 S TENSOR REMARK 3 S11: 0.0594 S12: 0.0651 S13: 0.0462 REMARK 3 S21: -0.1630 S22: -0.1020 S23: -0.2077 REMARK 3 S31: -0.0398 S32: 0.1745 S33: 0.0395 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 394 THROUGH 506 ) REMARK 3 ORIGIN FOR THE GROUP (A): 110.2369 302.9986 190.9456 REMARK 3 T TENSOR REMARK 3 T11: 0.2095 T22: 0.2912 REMARK 3 T33: 0.2082 T12: -0.0535 REMARK 3 T13: -0.0367 T23: -0.0241 REMARK 3 L TENSOR REMARK 3 L11: 2.1986 L22: 2.8088 REMARK 3 L33: 1.6917 L12: 0.3496 REMARK 3 L13: 0.2218 L23: 0.9488 REMARK 3 S TENSOR REMARK 3 S11: 0.1520 S12: -0.4315 S13: 0.1805 REMARK 3 S21: 0.3135 S22: 0.0157 S23: -0.4177 REMARK 3 S31: -0.0515 S32: 0.3890 S33: -0.1450 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 83.7634 313.5499 173.5862 REMARK 3 T TENSOR REMARK 3 T11: 0.4871 T22: 0.3015 REMARK 3 T33: 0.4326 T12: 0.0123 REMARK 3 T13: 0.0851 T23: 0.0858 REMARK 3 L TENSOR REMARK 3 L11: 4.7250 L22: 3.9154 REMARK 3 L33: 2.1208 L12: 0.1218 REMARK 3 L13: -0.1258 L23: 0.3782 REMARK 3 S TENSOR REMARK 3 S11: 0.1914 S12: 0.6762 S13: 0.5339 REMARK 3 S21: -0.7111 S22: 0.2603 S23: 0.1907 REMARK 3 S31: -1.0353 S32: -0.2042 S33: -0.2875 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 4 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 81.9325 312.0364 175.1605 REMARK 3 T TENSOR REMARK 3 T11: 0.3435 T22: 0.5402 REMARK 3 T33: 0.4228 T12: -0.1095 REMARK 3 T13: 0.0384 T23: 0.0916 REMARK 3 L TENSOR REMARK 3 L11: 4.2327 L22: 5.0568 REMARK 3 L33: 3.8011 L12: 0.3562 REMARK 3 L13: 0.8555 L23: 0.8702 REMARK 3 S TENSOR REMARK 3 S11: 0.2033 S12: 0.1681 S13: 0.5058 REMARK 3 S21: 0.0136 S22: 0.0212 S23: 0.5745 REMARK 3 S31: 0.2257 S32: -1.4995 S33: -0.1499 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4K98 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000079050. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41225 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NAAC, 10% MPD, PH 5.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.68750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.93850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 66.73250 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 42.68750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.93850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 66.73250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.68750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.93850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 66.73250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 42.68750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 48.93850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 66.73250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 934 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 146 REMARK 465 PRO A 147 REMARK 465 ASP A 148 REMARK 465 ARG A 241 REMARK 465 ILE A 242 REMARK 465 PRO A 243 REMARK 465 ARG A 244 REMARK 465 LEU A 507 REMARK 465 DA D 16 REMARK 465 DA D 17 REMARK 465 DT E 1 REMARK 465 DT E 2 REMARK 465 DT E 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG D 9 P DG D 9 O5' -0.073 REMARK 500 DA D 11 O3' DA D 11 C3' -0.042 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG D 6 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DC D 8 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DC D 8 C4 - C5 - C6 ANGL. DEV. = 4.0 DEGREES REMARK 500 DC D 8 C5 - C6 - N1 ANGL. DEV. = -3.3 DEGREES REMARK 500 DC D 8 N3 - C2 - O2 ANGL. DEV. = -4.9 DEGREES REMARK 500 DG D 9 C5 - C6 - O6 ANGL. DEV. = -4.1 DEGREES REMARK 500 DA D 11 C3' - C2' - C1' ANGL. DEV. = -5.6 DEGREES REMARK 500 DA D 11 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DC D 14 O5' - C5' - C4' ANGL. DEV. = -4.8 DEGREES REMARK 500 DC D 14 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DC E 7 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DT E 8 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DC E 10 O4' - C1' - N1 ANGL. DEV. = -6.0 DEGREES REMARK 500 DG E 11 O4' - C1' - N9 ANGL. DEV. = -10.4 DEGREES REMARK 500 DG E 11 C4 - C5 - N7 ANGL. DEV. = 3.0 DEGREES REMARK 500 DG E 11 N1 - C6 - O6 ANGL. DEV. = 3.6 DEGREES REMARK 500 DG E 12 O4' - C1' - N9 ANGL. DEV. = -6.0 DEGREES REMARK 500 DC E 13 O5' - C5' - C4' ANGL. DEV. = -5.2 DEGREES REMARK 500 DA E 14 O4' - C1' - N9 ANGL. DEV. = 5.3 DEGREES REMARK 500 DA E 15 O4' - C1' - N9 ANGL. DEV. = -5.3 DEGREES REMARK 500 DT E 17 O4' - C1' - N1 ANGL. DEV. = 4.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 185 -93.35 -119.82 REMARK 500 GLU A 186 109.04 -54.23 REMARK 500 SER A 207 -54.54 70.10 REMARK 500 TYR A 229 -123.11 49.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 GTP WAS ADDED TO THE CRYSTALLIZATION CONDITION AND A 5'-PPPG(2',5') REMARK 600 G LIGAND WAS OBSERVED WHICH HAS BEEN REPRESENTED AS GTP AND 5GP REMARK 600 WITH A 2' TO 5' LINK REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 211 OE1 REMARK 620 2 ASP A 213 OD2 97.0 REMARK 620 3 GTP A 604 O3G 96.8 164.6 REMARK 620 4 GTP A 604 O2B 165.3 84.1 80.8 REMARK 620 5 GTP A 604 O2A 113.0 93.0 87.7 81.5 REMARK 620 6 HOH A 722 O 76.7 81.6 95.2 89.1 169.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 603 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 211 OE2 REMARK 620 2 ASP A 213 OD1 80.2 REMARK 620 3 ASP A 307 OD2 73.2 96.0 REMARK 620 4 GTP A 604 O2A 98.7 85.9 171.1 REMARK 620 5 5GP A 605 O2' 166.4 89.7 98.9 89.7 REMARK 620 6 5GP A 605 O3' 138.8 117.3 68.2 118.5 40.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 378 NE2 REMARK 620 2 CYS A 384 SG 110.9 REMARK 620 3 CYS A 385 SG 103.2 131.8 REMARK 620 4 CYS A 392 SG 99.2 100.8 106.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTP A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5GP A 605 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4K96 RELATED DB: PDB REMARK 900 RELATED ID: 4K97 RELATED DB: PDB REMARK 900 RELATED ID: 4K8V RELATED DB: PDB REMARK 900 RELATED ID: 4K99 RELATED DB: PDB REMARK 900 RELATED ID: 4K9A RELATED DB: PDB REMARK 900 RELATED ID: 4K9B RELATED DB: PDB DBREF 4K98 A 147 507 UNP Q8C6L5 CGAS_MOUSE 147 507 DBREF 4K98 D 1 17 PDB 4K98 4K98 1 17 DBREF 4K98 E 1 17 PDB 4K98 4K98 1 17 SEQADV 4K98 SER A 146 UNP Q8C6L5 EXPRESSION TAG SEQRES 1 A 362 SER PRO ASP LYS LEU LYS LYS VAL LEU ASP LYS LEU ARG SEQRES 2 A 362 LEU LYS ARG LYS ASP ILE SER GLU ALA ALA GLU THR VAL SEQRES 3 A 362 ASN LYS VAL VAL GLU ARG LEU LEU ARG ARG MET GLN LYS SEQRES 4 A 362 ARG GLU SER GLU PHE LYS GLY VAL GLU GLN LEU ASN THR SEQRES 5 A 362 GLY SER TYR TYR GLU HIS VAL LYS ILE SER ALA PRO ASN SEQRES 6 A 362 GLU PHE ASP VAL MET PHE LYS LEU GLU VAL PRO ARG ILE SEQRES 7 A 362 GLU LEU GLN GLU TYR TYR GLU THR GLY ALA PHE TYR LEU SEQRES 8 A 362 VAL LYS PHE LYS ARG ILE PRO ARG GLY ASN PRO LEU SER SEQRES 9 A 362 HIS PHE LEU GLU GLY GLU VAL LEU SER ALA THR LYS MET SEQRES 10 A 362 LEU SER LYS PHE ARG LYS ILE ILE LYS GLU GLU VAL LYS SEQRES 11 A 362 GLU ILE LYS ASP ILE ASP VAL SER VAL GLU LYS GLU LYS SEQRES 12 A 362 PRO GLY SER PRO ALA VAL THR LEU LEU ILE ARG ASN PRO SEQRES 13 A 362 GLU GLU ILE SER VAL ASP ILE ILE LEU ALA LEU GLU SER SEQRES 14 A 362 LYS GLY SER TRP PRO ILE SER THR LYS GLU GLY LEU PRO SEQRES 15 A 362 ILE GLN GLY TRP LEU GLY THR LYS VAL ARG THR ASN LEU SEQRES 16 A 362 ARG ARG GLU PRO PHE TYR LEU VAL PRO LYS ASN ALA LYS SEQRES 17 A 362 ASP GLY ASN SER PHE GLN GLY GLU THR TRP ARG LEU SER SEQRES 18 A 362 PHE SER HIS THR GLU LYS TYR ILE LEU ASN ASN HIS GLY SEQRES 19 A 362 ILE GLU LYS THR CYS CYS GLU SER SER GLY ALA LYS CYS SEQRES 20 A 362 CYS ARG LYS GLU CYS LEU LYS LEU MET LYS TYR LEU LEU SEQRES 21 A 362 GLU GLN LEU LYS LYS GLU PHE GLN GLU LEU ASP ALA PHE SEQRES 22 A 362 CYS SER TYR HIS VAL LYS THR ALA ILE PHE HIS MET TRP SEQRES 23 A 362 THR GLN ASP PRO GLN ASP SER GLN TRP ASP PRO ARG ASN SEQRES 24 A 362 LEU SER SER CYS PHE ASP LYS LEU LEU ALA PHE PHE LEU SEQRES 25 A 362 GLU CYS LEU ARG THR GLU LYS LEU ASP HIS TYR PHE ILE SEQRES 26 A 362 PRO LYS PHE ASN LEU PHE SER GLN GLU LEU ILE ASP ARG SEQRES 27 A 362 LYS SER LYS GLU PHE LEU SER LYS LYS ILE GLU TYR GLU SEQRES 28 A 362 ARG ASN ASN GLY PHE PRO ILE PHE ASP LYS LEU SEQRES 1 D 17 DA DA DA DT DT DG DC DC DG DA DA DG DA SEQRES 2 D 17 DC DG DA DA SEQRES 1 E 17 DT DT DT DC DG DT DC DT DT DC DG DG DC SEQRES 2 E 17 DA DA DT DT HET ZN A 601 1 HET MG A 602 1 HET MG A 603 1 HET GTP A 604 32 HET 5GP A 605 23 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM 5GP GUANOSINE-5'-MONOPHOSPHATE FORMUL 4 ZN ZN 2+ FORMUL 5 MG 2(MG 2+) FORMUL 7 GTP C10 H16 N5 O14 P3 FORMUL 8 5GP C10 H14 N5 O8 P FORMUL 9 HOH *361(H2 O) HELIX 1 1 LYS A 149 ARG A 158 1 10 HELIX 2 2 LYS A 160 GLN A 183 1 24 HELIX 3 3 GLY A 198 GLU A 202 1 5 HELIX 4 4 ASN A 246 HIS A 250 5 5 HELIX 5 5 SER A 258 GLU A 276 1 19 HELIX 6 6 PRO A 319 LYS A 323 5 5 HELIX 7 7 GLY A 333 ARG A 342 1 10 HELIX 8 8 PHE A 367 ASN A 377 1 11 HELIX 9 9 CYS A 393 PHE A 412 1 20 HELIX 10 10 GLN A 413 ASP A 416 5 4 HELIX 11 11 CYS A 419 ASP A 434 1 16 HELIX 12 12 GLN A 436 ARG A 443 5 8 HELIX 13 13 ASN A 444 GLU A 463 1 20 HELIX 14 14 ASP A 482 ASN A 499 1 18 HELIX 15 15 GLY A 500 LYS A 506 5 7 SHEET 1 A 7 GLU A 193 THR A 197 0 SHEET 2 A 7 GLU A 211 GLU A 219 -1 O MET A 215 N LEU A 195 SHEET 3 A 7 GLU A 303 SER A 314 1 O ASP A 307 N PHE A 212 SHEET 4 A 7 PHE A 345 VAL A 348 -1 O PHE A 345 N SER A 314 SHEET 5 A 7 TRP A 363 SER A 366 -1 O ARG A 364 N VAL A 348 SHEET 6 A 7 PHE A 234 PHE A 239 -1 N TYR A 235 O TRP A 363 SHEET 7 A 7 ILE A 223 GLU A 227 -1 N GLN A 226 O LEU A 236 SHEET 1 B 5 GLU A 193 THR A 197 0 SHEET 2 B 5 GLU A 211 GLU A 219 -1 O MET A 215 N LEU A 195 SHEET 3 B 5 GLU A 303 SER A 314 1 O ASP A 307 N PHE A 212 SHEET 4 B 5 ALA A 293 ARG A 299 -1 N ILE A 298 O ILE A 304 SHEET 5 B 5 ASP A 281 VAL A 284 -1 N SER A 283 O LEU A 297 SHEET 1 C 2 LEU A 252 GLU A 253 0 SHEET 2 C 2 VAL A 256 LEU A 257 -1 O VAL A 256 N GLU A 253 SHEET 1 D 2 ALA A 352 ASP A 354 0 SHEET 2 D 2 SER A 357 GLN A 359 -1 O SER A 357 N ASP A 354 LINK O2' GTP A 604 P 5GP A 605 1555 1555 1.56 LINK OE1 GLU A 211 MG MG A 602 1555 1555 2.04 LINK OE2 GLU A 211 MG MG A 603 1555 1555 2.27 LINK OD2 ASP A 213 MG MG A 602 1555 1555 2.20 LINK OD1 ASP A 213 MG MG A 603 1555 1555 2.26 LINK OD2 ASP A 307 MG MG A 603 1555 1555 2.27 LINK NE2 HIS A 378 ZN ZN A 601 1555 1555 2.17 LINK SG CYS A 384 ZN ZN A 601 1555 1555 2.33 LINK SG CYS A 385 ZN ZN A 601 1555 1555 2.35 LINK SG CYS A 392 ZN ZN A 601 1555 1555 2.36 LINK MG MG A 602 O3G GTP A 604 1555 1555 2.05 LINK MG MG A 602 O2B GTP A 604 1555 1555 2.30 LINK MG MG A 602 O2A GTP A 604 1555 1555 2.45 LINK MG MG A 602 O HOH A 722 1555 1555 2.50 LINK MG MG A 603 O2A GTP A 604 1555 1555 2.58 LINK MG MG A 603 O2' 5GP A 605 1555 1555 2.51 LINK MG MG A 603 O3' 5GP A 605 1555 1555 2.59 CISPEP 1 LYS A 184 ARG A 185 0 -3.60 CISPEP 2 ASN A 300 PRO A 301 0 15.29 SITE 1 AC1 4 HIS A 378 CYS A 384 CYS A 385 CYS A 392 SITE 1 AC2 5 GLU A 211 ASP A 213 MG A 603 GTP A 604 SITE 2 AC2 5 HOH A 722 SITE 1 AC3 6 GLU A 211 ASP A 213 ASP A 307 MG A 602 SITE 2 AC3 6 GTP A 604 5GP A 605 SITE 1 AC4 18 GLY A 198 SER A 199 GLU A 211 ASP A 213 SITE 2 AC4 18 ARG A 364 LYS A 402 CYS A 419 SER A 420 SITE 3 AC4 18 TYR A 421 MG A 602 MG A 603 5GP A 605 SITE 4 AC4 18 HOH A 746 HOH A 756 HOH A 763 HOH A 764 SITE 5 AC4 18 HOH A 836 HOH A1001 SITE 1 AC5 11 THR A 197 ASP A 213 MET A 215 PRO A 292 SITE 2 AC5 11 ASP A 307 ARG A 364 SER A 366 SER A 368 SITE 3 AC5 11 MG A 603 GTP A 604 HOH A 714 CRYST1 85.375 97.877 133.465 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011713 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010217 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007493 0.00000