HEADER TRANSFERASE/DNA 19-APR-13 4K99 TITLE STRUCTURE OF TERNARY COMPLEX OF CGAS WITH DSDNA AND BOUND 5 -PPPDG(2 , TITLE 2 5 )PDG COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIC GMP-AMP SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN, UNP RESIDUES 147-507; COMPND 5 SYNONYM: CGAMP SYNTHASE, CGAS, M-CGAS, MAB-21 DOMAIN-CONTAINING COMPND 6 PROTEIN 1; COMPND 7 EC: 2.7.7.-; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DNA-F; COMPND 11 CHAIN: D; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA-R; COMPND 15 CHAIN: E; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: MB21D1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 OTHER_DETAILS: THIS SEQUENCE WAS SYNTHESIZED BY REGULAR PROTOCOL; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: THIS SEQUENCE WAS SYNTHESIZED BY REGULAR PROTOCOL KEYWDS NUCLEOTIDYLTRANSFERASE FOLD, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.GAO,Y.WU,D.J.PATEL REVDAT 3 28-FEB-24 4K99 1 REMARK SEQADV LINK REVDAT 2 28-AUG-13 4K99 1 JRNL REVDAT 1 15-MAY-13 4K99 0 JRNL AUTH P.GAO,M.ASCANO,Y.WU,W.BARCHET,B.L.GAFFNEY,T.ZILLINGER, JRNL AUTH 2 A.A.SERGANOV,Y.LIU,R.A.JONES,G.HARTMANN,T.TUSCHL,D.J.PATEL JRNL TITL CYCLIC [G(2',5')PA(3',5')P] IS THE METAZOAN SECOND MESSENGER JRNL TITL 2 PRODUCED BY DNA-ACTIVATED CYCLIC GMP-AMP SYNTHASE. JRNL REF CELL(CAMBRIDGE,MASS.) V. 153 1094 2013 JRNL REFN ISSN 0092-8674 JRNL PMID 23647843 JRNL DOI 10.1016/J.CELL.2013.04.046 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 40199 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.210 REMARK 3 FREE R VALUE TEST SET COUNT : 1693 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.1838 - 4.4624 0.99 3355 147 0.1702 0.1954 REMARK 3 2 4.4624 - 3.5427 1.00 3253 143 0.1521 0.1930 REMARK 3 3 3.5427 - 3.0951 1.00 3234 143 0.1686 0.1941 REMARK 3 4 3.0951 - 2.8122 1.00 3210 140 0.1912 0.2338 REMARK 3 5 2.8122 - 2.6107 1.00 3214 142 0.1905 0.2395 REMARK 3 6 2.6107 - 2.4568 1.00 3207 141 0.1873 0.2356 REMARK 3 7 2.4568 - 2.3338 1.00 3165 139 0.1818 0.2014 REMARK 3 8 2.3338 - 2.2322 1.00 3170 139 0.1828 0.2306 REMARK 3 9 2.2322 - 2.1463 1.00 3180 140 0.1838 0.2311 REMARK 3 10 2.1463 - 2.0722 1.00 3170 140 0.1988 0.2575 REMARK 3 11 2.0722 - 2.0074 1.00 3175 140 0.2066 0.2439 REMARK 3 12 2.0074 - 1.9500 1.00 3173 139 0.2298 0.2706 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3712 REMARK 3 ANGLE : 1.718 5123 REMARK 3 CHIRALITY : 0.156 556 REMARK 3 PLANARITY : 0.004 539 REMARK 3 DIHEDRAL : 20.676 1468 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 149 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): 182.6343 414.9017 172.8272 REMARK 3 T TENSOR REMARK 3 T11: 0.2218 T22: 0.1057 REMARK 3 T33: 0.3714 T12: -0.0920 REMARK 3 T13: 0.0401 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 2.0177 L22: 1.8582 REMARK 3 L33: 4.5228 L12: -0.2354 REMARK 3 L13: 0.2625 L23: -0.2276 REMARK 3 S TENSOR REMARK 3 S11: 0.1038 S12: -0.0141 S13: 0.5016 REMARK 3 S21: -0.0967 S22: 0.0398 S23: 0.1921 REMARK 3 S31: -0.7865 S32: -0.4799 S33: -0.1239 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 183 THROUGH 210 ) REMARK 3 ORIGIN FOR THE GROUP (A): 184.4307 405.4958 163.9369 REMARK 3 T TENSOR REMARK 3 T11: 0.3118 T22: 0.2276 REMARK 3 T33: 0.2328 T12: -0.0462 REMARK 3 T13: 0.0069 T23: 0.0573 REMARK 3 L TENSOR REMARK 3 L11: 2.4288 L22: 2.7590 REMARK 3 L33: 3.3135 L12: 0.2553 REMARK 3 L13: -0.6393 L23: 1.3102 REMARK 3 S TENSOR REMARK 3 S11: -0.0460 S12: 0.4148 S13: 0.1113 REMARK 3 S21: -0.5076 S22: 0.0526 S23: 0.1582 REMARK 3 S31: -0.0805 S32: -0.0083 S33: -0.0673 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 211 THROUGH 258 ) REMARK 3 ORIGIN FOR THE GROUP (A): 194.1611 390.4467 158.0930 REMARK 3 T TENSOR REMARK 3 T11: 0.4140 T22: 0.3273 REMARK 3 T33: 0.3443 T12: 0.0272 REMARK 3 T13: 0.1075 T23: -0.0420 REMARK 3 L TENSOR REMARK 3 L11: 3.1463 L22: 3.1872 REMARK 3 L33: 1.7193 L12: -1.3796 REMARK 3 L13: -0.3709 L23: -0.7127 REMARK 3 S TENSOR REMARK 3 S11: 0.2686 S12: 0.5516 S13: -0.4925 REMARK 3 S21: -0.9143 S22: -0.2755 S23: -0.2239 REMARK 3 S31: 0.3377 S32: 0.1689 S33: 0.0335 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 259 THROUGH 314 ) REMARK 3 ORIGIN FOR THE GROUP (A): 193.8757 410.1476 160.0395 REMARK 3 T TENSOR REMARK 3 T11: 0.2827 T22: 0.2732 REMARK 3 T33: 0.2875 T12: -0.0340 REMARK 3 T13: 0.1090 T23: 0.0796 REMARK 3 L TENSOR REMARK 3 L11: 1.0155 L22: 3.5201 REMARK 3 L33: 1.8057 L12: -0.0224 REMARK 3 L13: -0.0295 L23: -0.6604 REMARK 3 S TENSOR REMARK 3 S11: 0.0405 S12: 0.2399 S13: 0.2480 REMARK 3 S21: -0.4384 S22: -0.2000 S23: -0.4111 REMARK 3 S31: -0.1378 S32: 0.3078 S33: 0.0402 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 315 THROUGH 376 ) REMARK 3 ORIGIN FOR THE GROUP (A): 188.2509 389.6212 171.0105 REMARK 3 T TENSOR REMARK 3 T11: 0.1559 T22: 0.1428 REMARK 3 T33: 0.2254 T12: 0.0070 REMARK 3 T13: 0.0453 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 1.9960 L22: 1.3880 REMARK 3 L33: 2.2329 L12: -0.2793 REMARK 3 L13: -0.8619 L23: -0.4035 REMARK 3 S TENSOR REMARK 3 S11: 0.1151 S12: 0.0630 S13: 0.0728 REMARK 3 S21: -0.1885 S22: -0.1196 S23: -0.4109 REMARK 3 S31: 0.0196 S32: 0.2729 S33: -0.0230 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 377 THROUGH 482 ) REMARK 3 ORIGIN FOR THE GROUP (A): 190.2979 398.1340 186.5218 REMARK 3 T TENSOR REMARK 3 T11: 0.1775 T22: 0.2180 REMARK 3 T33: 0.2009 T12: -0.0386 REMARK 3 T13: -0.0031 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 1.9038 L22: 1.6491 REMARK 3 L33: 1.0630 L12: 0.0582 REMARK 3 L13: 0.2305 L23: 0.4691 REMARK 3 S TENSOR REMARK 3 S11: 0.1201 S12: -0.2278 S13: 0.0759 REMARK 3 S21: 0.1479 S22: -0.0334 S23: -0.2590 REMARK 3 S31: -0.0299 S32: 0.2181 S33: -0.0908 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 483 THROUGH 506 ) REMARK 3 ORIGIN FOR THE GROUP (A): 201.9576 405.9702 193.3055 REMARK 3 T TENSOR REMARK 3 T11: 0.2663 T22: 0.5699 REMARK 3 T33: 0.4165 T12: -0.1104 REMARK 3 T13: -0.0942 T23: -0.1347 REMARK 3 L TENSOR REMARK 3 L11: 4.1604 L22: 2.8694 REMARK 3 L33: 2.9618 L12: -0.7105 REMARK 3 L13: -1.3420 L23: 0.9947 REMARK 3 S TENSOR REMARK 3 S11: -0.3148 S12: -1.2572 S13: 0.3343 REMARK 3 S21: 0.8861 S22: 0.3710 S23: -0.5746 REMARK 3 S31: 0.0554 S32: 0.5501 S33: -0.0003 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 168.6724 410.3089 170.7274 REMARK 3 T TENSOR REMARK 3 T11: 0.4604 T22: 0.2672 REMARK 3 T33: 0.3276 T12: 0.0571 REMARK 3 T13: 0.0861 T23: 0.0872 REMARK 3 L TENSOR REMARK 3 L11: 4.5296 L22: 2.7202 REMARK 3 L33: 1.6982 L12: 0.3588 REMARK 3 L13: 0.0141 L23: -0.9499 REMARK 3 S TENSOR REMARK 3 S11: 0.2615 S12: 0.5370 S13: 0.5276 REMARK 3 S21: -0.5841 S22: 0.2052 S23: 0.1850 REMARK 3 S31: -0.7945 S32: -0.2630 S33: -0.2607 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 4 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 166.8405 408.7279 172.2822 REMARK 3 T TENSOR REMARK 3 T11: 0.3560 T22: 0.5970 REMARK 3 T33: 0.2595 T12: -0.1477 REMARK 3 T13: -0.0212 T23: 0.1240 REMARK 3 L TENSOR REMARK 3 L11: 3.5510 L22: 4.3088 REMARK 3 L33: 2.0372 L12: -0.0283 REMARK 3 L13: 0.9542 L23: 1.1831 REMARK 3 S TENSOR REMARK 3 S11: 0.2768 S12: 0.4249 S13: 0.5443 REMARK 3 S21: -0.2081 S22: 0.1514 S23: -0.0055 REMARK 3 S31: 0.5591 S32: -1.5638 S33: -0.0420 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4K99 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000079051. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40199 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NAAC, 12% MPD, PH 5.2, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.56200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.80650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 65.68600 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 42.56200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.80650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.68600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.56200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.80650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.68600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 42.56200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 48.80650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.68600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 736 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 146 REMARK 465 PRO A 147 REMARK 465 ASP A 148 REMARK 465 ARG A 241 REMARK 465 ILE A 242 REMARK 465 PRO A 243 REMARK 465 ARG A 244 REMARK 465 LEU A 507 REMARK 465 DA D 16 REMARK 465 DA D 17 REMARK 465 DT E 1 REMARK 465 DT E 2 REMARK 465 DT E 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC D 8 O3' DC D 8 C3' -0.037 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA D 1 C3' - C2' - C1' ANGL. DEV. = -5.0 DEGREES REMARK 500 DA D 1 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DC D 8 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 DA D 11 C3' - C2' - C1' ANGL. DEV. = -5.3 DEGREES REMARK 500 DA D 11 O4' - C1' - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 DC E 7 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT E 8 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DG E 11 O4' - C1' - N9 ANGL. DEV. = -6.7 DEGREES REMARK 500 DG E 12 O4' - C1' - N9 ANGL. DEV. = -5.3 DEGREES REMARK 500 DA E 14 C3' - C2' - C1' ANGL. DEV. = -5.0 DEGREES REMARK 500 DA E 14 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 185 -73.73 -140.70 REMARK 500 SER A 207 -56.62 74.14 REMARK 500 TYR A 229 -124.83 49.60 REMARK 500 GLU A 253 83.18 -150.87 REMARK 500 TRP A 331 -69.93 -121.94 REMARK 500 ASP A 505 35.51 -94.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 3'-DGTP WAS ADDED TO THE CRYSTALLIZATION CONDITION AND A PPP-3'DG-P- REMARK 600 3'DG LIGAND WAS OBSERVED WHICH HAS BEEN REPRESENTED AS GH3 AND GDO REMARK 600 WITH A 2' TO 5' LINK REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 211 OE1 REMARK 620 2 ASP A 213 OD2 96.6 REMARK 620 3 GH3 A 604 O3G 95.6 166.9 REMARK 620 4 GH3 A 604 O2A 108.1 89.7 91.2 REMARK 620 5 GH3 A 604 O2B 164.7 85.6 81.4 87.1 REMARK 620 6 HOH A 703 O 79.0 82.7 94.8 170.3 86.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 603 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 211 OE2 REMARK 620 2 ASP A 213 OD1 67.7 REMARK 620 3 ASP A 307 OD2 84.7 87.0 REMARK 620 4 GH3 A 604 O2A 113.9 84.2 154.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 378 NE2 REMARK 620 2 CYS A 384 SG 109.6 REMARK 620 3 CYS A 385 SG 104.9 132.7 REMARK 620 4 CYS A 392 SG 98.5 98.1 107.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GH3 A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDO A 605 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4K96 RELATED DB: PDB REMARK 900 RELATED ID: 4K97 RELATED DB: PDB REMARK 900 RELATED ID: 4K98 RELATED DB: PDB REMARK 900 RELATED ID: 4K8V RELATED DB: PDB REMARK 900 RELATED ID: 4K9A RELATED DB: PDB REMARK 900 RELATED ID: 4K9B RELATED DB: PDB DBREF 4K99 A 147 507 UNP Q8C6L5 CGAS_MOUSE 147 507 DBREF 4K99 D 1 17 PDB 4K99 4K99 1 17 DBREF 4K99 E 1 17 PDB 4K99 4K99 1 17 SEQADV 4K99 SER A 146 UNP Q8C6L5 EXPRESSION TAG SEQRES 1 A 362 SER PRO ASP LYS LEU LYS LYS VAL LEU ASP LYS LEU ARG SEQRES 2 A 362 LEU LYS ARG LYS ASP ILE SER GLU ALA ALA GLU THR VAL SEQRES 3 A 362 ASN LYS VAL VAL GLU ARG LEU LEU ARG ARG MET GLN LYS SEQRES 4 A 362 ARG GLU SER GLU PHE LYS GLY VAL GLU GLN LEU ASN THR SEQRES 5 A 362 GLY SER TYR TYR GLU HIS VAL LYS ILE SER ALA PRO ASN SEQRES 6 A 362 GLU PHE ASP VAL MET PHE LYS LEU GLU VAL PRO ARG ILE SEQRES 7 A 362 GLU LEU GLN GLU TYR TYR GLU THR GLY ALA PHE TYR LEU SEQRES 8 A 362 VAL LYS PHE LYS ARG ILE PRO ARG GLY ASN PRO LEU SER SEQRES 9 A 362 HIS PHE LEU GLU GLY GLU VAL LEU SER ALA THR LYS MET SEQRES 10 A 362 LEU SER LYS PHE ARG LYS ILE ILE LYS GLU GLU VAL LYS SEQRES 11 A 362 GLU ILE LYS ASP ILE ASP VAL SER VAL GLU LYS GLU LYS SEQRES 12 A 362 PRO GLY SER PRO ALA VAL THR LEU LEU ILE ARG ASN PRO SEQRES 13 A 362 GLU GLU ILE SER VAL ASP ILE ILE LEU ALA LEU GLU SER SEQRES 14 A 362 LYS GLY SER TRP PRO ILE SER THR LYS GLU GLY LEU PRO SEQRES 15 A 362 ILE GLN GLY TRP LEU GLY THR LYS VAL ARG THR ASN LEU SEQRES 16 A 362 ARG ARG GLU PRO PHE TYR LEU VAL PRO LYS ASN ALA LYS SEQRES 17 A 362 ASP GLY ASN SER PHE GLN GLY GLU THR TRP ARG LEU SER SEQRES 18 A 362 PHE SER HIS THR GLU LYS TYR ILE LEU ASN ASN HIS GLY SEQRES 19 A 362 ILE GLU LYS THR CYS CYS GLU SER SER GLY ALA LYS CYS SEQRES 20 A 362 CYS ARG LYS GLU CYS LEU LYS LEU MET LYS TYR LEU LEU SEQRES 21 A 362 GLU GLN LEU LYS LYS GLU PHE GLN GLU LEU ASP ALA PHE SEQRES 22 A 362 CYS SER TYR HIS VAL LYS THR ALA ILE PHE HIS MET TRP SEQRES 23 A 362 THR GLN ASP PRO GLN ASP SER GLN TRP ASP PRO ARG ASN SEQRES 24 A 362 LEU SER SER CYS PHE ASP LYS LEU LEU ALA PHE PHE LEU SEQRES 25 A 362 GLU CYS LEU ARG THR GLU LYS LEU ASP HIS TYR PHE ILE SEQRES 26 A 362 PRO LYS PHE ASN LEU PHE SER GLN GLU LEU ILE ASP ARG SEQRES 27 A 362 LYS SER LYS GLU PHE LEU SER LYS LYS ILE GLU TYR GLU SEQRES 28 A 362 ARG ASN ASN GLY PHE PRO ILE PHE ASP LYS LEU SEQRES 1 D 17 DA DA DA DT DT DG DC DC DG DA DA DG DA SEQRES 2 D 17 DC DG DA DA SEQRES 1 E 17 DT DT DT DC DG DT DC DT DT DC DG DG DC SEQRES 2 E 17 DA DA DT DT HET ZN A 601 1 HET MG A 602 1 HET MG A 603 1 HET GH3 A 604 31 HET GDO A 605 22 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM GH3 3'-DEOXY-GUANOSINE-5'-TRIPHOSPHATE HETNAM GDO 3'-DEOXY-GUANOSINE 5'-MONOPHOSPHATE FORMUL 4 ZN ZN 2+ FORMUL 5 MG 2(MG 2+) FORMUL 7 GH3 C10 H16 N5 O13 P3 FORMUL 8 GDO C10 H14 N5 O7 P FORMUL 9 HOH *314(H2 O) HELIX 1 1 LYS A 149 ARG A 158 1 10 HELIX 2 2 LYS A 160 LYS A 184 1 25 HELIX 3 3 GLY A 198 GLU A 202 1 5 HELIX 4 4 ASN A 246 HIS A 250 5 5 HELIX 5 5 SER A 258 ILE A 277 1 20 HELIX 6 6 PRO A 319 LYS A 323 5 5 HELIX 7 7 GLY A 333 ARG A 342 1 10 HELIX 8 8 PHE A 367 ASN A 377 1 11 HELIX 9 9 CYS A 393 PHE A 412 1 20 HELIX 10 10 GLN A 413 ASP A 416 5 4 HELIX 11 11 CYS A 419 ASP A 434 1 16 HELIX 12 12 GLN A 436 ARG A 443 5 8 HELIX 13 13 ASN A 444 THR A 462 1 19 HELIX 14 14 ASP A 482 ASN A 499 1 18 HELIX 15 15 GLY A 500 LYS A 506 5 7 SHEET 1 A 7 GLU A 193 THR A 197 0 SHEET 2 A 7 GLU A 211 GLU A 219 -1 O MET A 215 N LEU A 195 SHEET 3 A 7 GLU A 303 SER A 314 1 O ALA A 311 N LEU A 218 SHEET 4 A 7 PHE A 345 VAL A 348 -1 O PHE A 345 N SER A 314 SHEET 5 A 7 TRP A 363 SER A 366 -1 O ARG A 364 N VAL A 348 SHEET 6 A 7 PHE A 234 PHE A 239 -1 N TYR A 235 O TRP A 363 SHEET 7 A 7 ILE A 223 GLU A 227 -1 N GLU A 224 O LYS A 238 SHEET 1 B 5 GLU A 193 THR A 197 0 SHEET 2 B 5 GLU A 211 GLU A 219 -1 O MET A 215 N LEU A 195 SHEET 3 B 5 GLU A 303 SER A 314 1 O ALA A 311 N LEU A 218 SHEET 4 B 5 ALA A 293 ARG A 299 -1 N ILE A 298 O ILE A 304 SHEET 5 B 5 ASP A 281 VAL A 284 -1 N SER A 283 O LEU A 297 SHEET 1 C 2 LEU A 252 GLU A 253 0 SHEET 2 C 2 VAL A 256 LEU A 257 -1 O VAL A 256 N GLU A 253 SHEET 1 D 2 LYS A 353 ASP A 354 0 SHEET 2 D 2 SER A 357 PHE A 358 -1 O SER A 357 N ASP A 354 LINK O2' GH3 A 604 P GDO A 605 1555 1555 1.60 LINK OE1 GLU A 211 MG MG A 602 1555 1555 2.12 LINK OE2 GLU A 211 MG MG A 603 1555 1555 2.46 LINK OD2 ASP A 213 MG MG A 602 1555 1555 2.05 LINK OD1 ASP A 213 MG MG A 603 1555 1555 2.41 LINK OD2 ASP A 307 MG MG A 603 1555 1555 2.58 LINK NE2 HIS A 378 ZN ZN A 601 1555 1555 2.11 LINK SG CYS A 384 ZN ZN A 601 1555 1555 2.52 LINK SG CYS A 385 ZN ZN A 601 1555 1555 2.41 LINK SG CYS A 392 ZN ZN A 601 1555 1555 2.49 LINK MG MG A 602 O3G GH3 A 604 1555 1555 2.13 LINK MG MG A 602 O2A GH3 A 604 1555 1555 2.15 LINK MG MG A 602 O2B GH3 A 604 1555 1555 2.20 LINK MG MG A 602 O HOH A 703 1555 1555 2.24 LINK MG MG A 603 O2A GH3 A 604 1555 1555 2.32 CISPEP 1 LYS A 184 ARG A 185 0 -0.30 CISPEP 2 ASN A 300 PRO A 301 0 11.90 SITE 1 AC1 5 GLU A 211 ASP A 213 MG A 603 GH3 A 604 SITE 2 AC1 5 HOH A 703 SITE 1 AC2 6 GLU A 211 ASP A 213 ASP A 307 MG A 602 SITE 2 AC2 6 GH3 A 604 GDO A 605 SITE 1 AC3 21 GLY A 198 SER A 199 GLU A 211 ASP A 213 SITE 2 AC3 21 ARG A 364 LYS A 402 CYS A 419 SER A 420 SITE 3 AC3 21 TYR A 421 MG A 602 MG A 603 GDO A 605 SITE 4 AC3 21 HOH A 703 HOH A 721 HOH A 757 HOH A 776 SITE 5 AC3 21 HOH A 777 HOH A 815 HOH A 820 HOH A 856 SITE 6 AC3 21 HOH A 923 SITE 1 AC4 14 THR A 197 ASP A 213 MET A 215 PRO A 292 SITE 2 AC4 14 ASP A 307 ILE A 309 ARG A 364 SER A 366 SITE 3 AC4 14 SER A 368 MG A 603 GH3 A 604 HOH A 845 SITE 4 AC4 14 HOH A 957 HOH A 962 CRYST1 85.124 97.613 131.372 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011748 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010245 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007612 0.00000