data_4KA2 # _entry.id 4KA2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4KA2 pdb_00004ka2 10.2210/pdb4ka2/pdb RCSB RCSB079080 ? ? WWPDB D_1000079080 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4JZW 'Crystal structure of CD4-mimetic miniprotein M48U1 in complex with HIV-1 YU2 gp120 in P212121 space group' unspecified PDB 4JZZ 'Crystal structure of CD4-mimetic miniprotein M48U1 in complex with HIV-1 YU2 gp120 in C2221 space group' unspecified PDB 4K0A 'Crystal structure of CD4-mimetic miniprotein M48U7 in complex with HIV-1 YU2 gp120' unspecified PDB 2I5Y ;Crystal structure of CD4M47, a scorpion-toxin mimic of CD4, in complex with HIV-1 YU2 GP120 envelope glycoprotein and anti-HIV-1 antibody 17B ; unspecified PDB 2I60 ;Crystal structure of [Phe23]M47, a scorpion-toxic mimic of CD4, in complex with HIV-1 YU2 GP120 envelope glycoprotein and anti-HIV-1 antibody 17B ; unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4KA2 _pdbx_database_status.recvd_initial_deposition_date 2013-04-21 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Acharya, P.' 1 'Kwong, P.D.' 2 # _citation.id primary _citation.title 'Interfacial Cavity Filling To Optimize CD4-Mimetic Miniprotein Interactions with HIV-1 Surface Glycoprotein.' _citation.journal_abbrev J.Med.Chem. _citation.journal_volume 56 _citation.page_first 5033 _citation.page_last 5047 _citation.year 2013 _citation.journal_id_ASTM JMCMAR _citation.country US _citation.journal_id_ISSN 0022-2623 _citation.journal_id_CSD 0151 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23710622 _citation.pdbx_database_id_DOI 10.1021/jm4002988 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Morellato-Castillo, L.' 1 ? primary 'Acharya, P.' 2 ? primary 'Combes, O.' 3 ? primary 'Michiels, J.' 4 ? primary 'Descours, A.' 5 ? primary 'Ramos, O.H.' 6 ? primary 'Yang, Y.' 7 ? primary 'Vanham, G.' 8 ? primary 'Arien, K.K.' 9 ? primary 'Kwong, P.D.' 10 ? primary 'Martin, L.' 11 ? primary 'Kessler, P.' 12 ? # _cell.entry_id 4KA2 _cell.length_a 64.372 _cell.length_b 163.441 _cell.length_c 78.168 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4KA2 _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'HIV-1 YU2 gp120' 41695.406 1 ? ? ? ? 2 polymer syn M48U12 3055.819 1 ? ? ? ? 3 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 8 ? ? ? ? 4 water nat water 18.015 236 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MPMGSLQPLATLYLLGMLVASVLAVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVKLENVTENFNMWKNN MVEQMHEDIISLWDQSLKPCVKLTGGSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIR PVVSTQLLLNGSLAEEEIVIRSENFTNNAKTIIVQLNESVVINCTRPNNGGSGSGGDIRQAHCNLSKTQWENTLEQIAIK LKEQFGNNKTIIFNPSSGGDPEIVTHSFNCGGEFFYCNSTQLFTWNDTRKLNNTGRNITLPCRIKQIINMWQEVGKAMYA PPIRGQIRCSSNITGLLLTRDGGKDTNGTEIFRPGGGDMRDNWRSELYKYKVVKIE ; ;MPMGSLQPLATLYLLGMLVASVLAVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVKLENVTENFNMWKNN MVEQMHEDIISLWDQSLKPCVKLTGGSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIR PVVSTQLLLNGSLAEEEIVIRSENFTNNAKTIIVQLNESVVINCTRPNNGGSGSGGDIRQAHCNLSKTQWENTLEQIAIK LKEQFGNNKTIIFNPSSGGDPEIVTHSFNCGGEFFYCNSTQLFTWNDTRKLNNTGRNITLPCRIKQIINMWQEVGKAMYA PPIRGQIRCSSNITGLLLTRDGGKDTNGTEIFRPGGGDMRDNWRSELYKYKVVKIE ; A ? 2 'polypeptide(L)' no yes '(MPT)NLHFCQLRCKSLGLLGRCA(DPR)T(U3X)CACV(NH2)' XNLHFCQLRCKSLGLLGRCAPTXCACVX R ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 PRO n 1 3 MET n 1 4 GLY n 1 5 SER n 1 6 LEU n 1 7 GLN n 1 8 PRO n 1 9 LEU n 1 10 ALA n 1 11 THR n 1 12 LEU n 1 13 TYR n 1 14 LEU n 1 15 LEU n 1 16 GLY n 1 17 MET n 1 18 LEU n 1 19 VAL n 1 20 ALA n 1 21 SER n 1 22 VAL n 1 23 LEU n 1 24 ALA n 1 25 VAL n 1 26 TRP n 1 27 LYS n 1 28 GLU n 1 29 ALA n 1 30 THR n 1 31 THR n 1 32 THR n 1 33 LEU n 1 34 PHE n 1 35 CYS n 1 36 ALA n 1 37 SER n 1 38 ASP n 1 39 ALA n 1 40 LYS n 1 41 ALA n 1 42 TYR n 1 43 ASP n 1 44 THR n 1 45 GLU n 1 46 VAL n 1 47 HIS n 1 48 ASN n 1 49 VAL n 1 50 TRP n 1 51 ALA n 1 52 THR n 1 53 HIS n 1 54 ALA n 1 55 CYS n 1 56 VAL n 1 57 PRO n 1 58 THR n 1 59 ASP n 1 60 PRO n 1 61 ASN n 1 62 PRO n 1 63 GLN n 1 64 GLU n 1 65 VAL n 1 66 LYS n 1 67 LEU n 1 68 GLU n 1 69 ASN n 1 70 VAL n 1 71 THR n 1 72 GLU n 1 73 ASN n 1 74 PHE n 1 75 ASN n 1 76 MET n 1 77 TRP n 1 78 LYS n 1 79 ASN n 1 80 ASN n 1 81 MET n 1 82 VAL n 1 83 GLU n 1 84 GLN n 1 85 MET n 1 86 HIS n 1 87 GLU n 1 88 ASP n 1 89 ILE n 1 90 ILE n 1 91 SER n 1 92 LEU n 1 93 TRP n 1 94 ASP n 1 95 GLN n 1 96 SER n 1 97 LEU n 1 98 LYS n 1 99 PRO n 1 100 CYS n 1 101 VAL n 1 102 LYS n 1 103 LEU n 1 104 THR n 1 105 GLY n 1 106 GLY n 1 107 SER n 1 108 VAL n 1 109 ILE n 1 110 THR n 1 111 GLN n 1 112 ALA n 1 113 CYS n 1 114 PRO n 1 115 LYS n 1 116 VAL n 1 117 SER n 1 118 PHE n 1 119 GLU n 1 120 PRO n 1 121 ILE n 1 122 PRO n 1 123 ILE n 1 124 HIS n 1 125 TYR n 1 126 CYS n 1 127 ALA n 1 128 PRO n 1 129 ALA n 1 130 GLY n 1 131 PHE n 1 132 ALA n 1 133 ILE n 1 134 LEU n 1 135 LYS n 1 136 CYS n 1 137 ASN n 1 138 ASP n 1 139 LYS n 1 140 LYS n 1 141 PHE n 1 142 ASN n 1 143 GLY n 1 144 THR n 1 145 GLY n 1 146 PRO n 1 147 CYS n 1 148 THR n 1 149 ASN n 1 150 VAL n 1 151 SER n 1 152 THR n 1 153 VAL n 1 154 GLN n 1 155 CYS n 1 156 THR n 1 157 HIS n 1 158 GLY n 1 159 ILE n 1 160 ARG n 1 161 PRO n 1 162 VAL n 1 163 VAL n 1 164 SER n 1 165 THR n 1 166 GLN n 1 167 LEU n 1 168 LEU n 1 169 LEU n 1 170 ASN n 1 171 GLY n 1 172 SER n 1 173 LEU n 1 174 ALA n 1 175 GLU n 1 176 GLU n 1 177 GLU n 1 178 ILE n 1 179 VAL n 1 180 ILE n 1 181 ARG n 1 182 SER n 1 183 GLU n 1 184 ASN n 1 185 PHE n 1 186 THR n 1 187 ASN n 1 188 ASN n 1 189 ALA n 1 190 LYS n 1 191 THR n 1 192 ILE n 1 193 ILE n 1 194 VAL n 1 195 GLN n 1 196 LEU n 1 197 ASN n 1 198 GLU n 1 199 SER n 1 200 VAL n 1 201 VAL n 1 202 ILE n 1 203 ASN n 1 204 CYS n 1 205 THR n 1 206 ARG n 1 207 PRO n 1 208 ASN n 1 209 ASN n 1 210 GLY n 1 211 GLY n 1 212 SER n 1 213 GLY n 1 214 SER n 1 215 GLY n 1 216 GLY n 1 217 ASP n 1 218 ILE n 1 219 ARG n 1 220 GLN n 1 221 ALA n 1 222 HIS n 1 223 CYS n 1 224 ASN n 1 225 LEU n 1 226 SER n 1 227 LYS n 1 228 THR n 1 229 GLN n 1 230 TRP n 1 231 GLU n 1 232 ASN n 1 233 THR n 1 234 LEU n 1 235 GLU n 1 236 GLN n 1 237 ILE n 1 238 ALA n 1 239 ILE n 1 240 LYS n 1 241 LEU n 1 242 LYS n 1 243 GLU n 1 244 GLN n 1 245 PHE n 1 246 GLY n 1 247 ASN n 1 248 ASN n 1 249 LYS n 1 250 THR n 1 251 ILE n 1 252 ILE n 1 253 PHE n 1 254 ASN n 1 255 PRO n 1 256 SER n 1 257 SER n 1 258 GLY n 1 259 GLY n 1 260 ASP n 1 261 PRO n 1 262 GLU n 1 263 ILE n 1 264 VAL n 1 265 THR n 1 266 HIS n 1 267 SER n 1 268 PHE n 1 269 ASN n 1 270 CYS n 1 271 GLY n 1 272 GLY n 1 273 GLU n 1 274 PHE n 1 275 PHE n 1 276 TYR n 1 277 CYS n 1 278 ASN n 1 279 SER n 1 280 THR n 1 281 GLN n 1 282 LEU n 1 283 PHE n 1 284 THR n 1 285 TRP n 1 286 ASN n 1 287 ASP n 1 288 THR n 1 289 ARG n 1 290 LYS n 1 291 LEU n 1 292 ASN n 1 293 ASN n 1 294 THR n 1 295 GLY n 1 296 ARG n 1 297 ASN n 1 298 ILE n 1 299 THR n 1 300 LEU n 1 301 PRO n 1 302 CYS n 1 303 ARG n 1 304 ILE n 1 305 LYS n 1 306 GLN n 1 307 ILE n 1 308 ILE n 1 309 ASN n 1 310 MET n 1 311 TRP n 1 312 GLN n 1 313 GLU n 1 314 VAL n 1 315 GLY n 1 316 LYS n 1 317 ALA n 1 318 MET n 1 319 TYR n 1 320 ALA n 1 321 PRO n 1 322 PRO n 1 323 ILE n 1 324 ARG n 1 325 GLY n 1 326 GLN n 1 327 ILE n 1 328 ARG n 1 329 CYS n 1 330 SER n 1 331 SER n 1 332 ASN n 1 333 ILE n 1 334 THR n 1 335 GLY n 1 336 LEU n 1 337 LEU n 1 338 LEU n 1 339 THR n 1 340 ARG n 1 341 ASP n 1 342 GLY n 1 343 GLY n 1 344 LYS n 1 345 ASP n 1 346 THR n 1 347 ASN n 1 348 GLY n 1 349 THR n 1 350 GLU n 1 351 ILE n 1 352 PHE n 1 353 ARG n 1 354 PRO n 1 355 GLY n 1 356 GLY n 1 357 GLY n 1 358 ASP n 1 359 MET n 1 360 ARG n 1 361 ASP n 1 362 ASN n 1 363 TRP n 1 364 ARG n 1 365 SER n 1 366 GLU n 1 367 LEU n 1 368 TYR n 1 369 LYS n 1 370 TYR n 1 371 LYS n 1 372 VAL n 1 373 VAL n 1 374 LYS n 1 375 ILE n 1 376 GLU n 2 1 MPT n 2 2 ASN n 2 3 LEU n 2 4 HIS n 2 5 PHE n 2 6 CYS n 2 7 GLN n 2 8 LEU n 2 9 ARG n 2 10 CYS n 2 11 LYS n 2 12 SER n 2 13 LEU n 2 14 GLY n 2 15 LEU n 2 16 LEU n 2 17 GLY n 2 18 ARG n 2 19 CYS n 2 20 ALA n 2 21 DPR n 2 22 THR n 2 23 U3X n 2 24 CYS n 2 25 ALA n 2 26 CYS n 2 27 VAL n 2 28 NH2 n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene gp120 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain YU2 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Human immunodeficiency virus 1' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11676 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 9606 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details ;DERIVED FROM SCYLLATOXIN (A SCORPION TOXIN) BY TRANSPLANTING THE GP120-INTERACTIVDERIVED FROM SCYLLATOXIN (A SCORPION TOXIN) BY TRANSPLANTING THE GP120-INTERACTIVE REGION OF CD4 ONTO THE SCYLLATOXIN SCAFFOLD,E REGION OF CD4 ONTO THE SCYLLATOXIN SCAFFOLD, ; # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 4KA2 4KA2 1 ? ? ? 2 PDB 4KA2 4KA2 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4KA2 A 1 ? 376 ? 4KA2 20 ? 492 ? 20 492 2 2 4KA2 R 1 ? 28 ? 4KA2 1 ? 28 ? 1 28 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DPR 'D-peptide linking' . D-PROLINE ? 'C5 H9 N O2' 115.130 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MPT non-polymer . 'BETA-MERCAPTOPROPIONIC ACID' ? 'C3 H6 O2 S' 106.144 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U3X 'L-peptide linking' n '4-[(cyclohexylmethyl)amino]-L-phenylalanine' ? 'C16 H24 N2 O2' 276.374 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4KA2 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.30 _exptl_crystal.density_percent_sol 46.46 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '9.0% PEG 4000, 14.0% isopropanol, 100 mM sodium citrate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2012-08-21 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-BM _diffrn_source.pdbx_wavelength 1.0000 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4KA2 _reflns.observed_criterion_sigma_I 1.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 1.792 _reflns.number_obs 30289 _reflns.number_all ? _reflns.percent_possible_obs 92.3 _reflns.pdbx_Rmerge_I_obs 0.12800 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 12.4000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.500 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.93 _reflns_shell.percent_possible_all 52.0 _reflns_shell.Rmerge_I_obs 0.54200 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.300 _reflns_shell.pdbx_redundancy 1.90 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4KA2 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.340 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 17.48 _refine.ls_d_res_high 1.79 _refine.ls_percent_reflns_obs 81.7 _refine.ls_R_factor_obs 0.170 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.167 _refine.ls_R_factor_R_free 0.228 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 6.260 _refine.ls_number_reflns_R_free 1998 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 26.00 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model Isotropic _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.210 _refine.pdbx_overall_phase_error 26.020 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2841 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 112 _refine_hist.number_atoms_solvent 236 _refine_hist.number_atoms_total 3189 _refine_hist.d_res_high 1.79 _refine_hist.d_res_low 17.48 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.013 ? ? 3154 'X-RAY DIFFRACTION' ? f_angle_d 1.372 ? ? 4298 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 14.345 ? ? 1176 'X-RAY DIFFRACTION' ? f_chiral_restr 0.082 ? ? 499 'X-RAY DIFFRACTION' ? f_plane_restr 0.007 ? ? 543 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 1.7919 1.8366 484 0.2804 19.00 0.3218 . . 33 . . 'X-RAY DIFFRACTION' . 1.8366 1.8862 852 0.2668 33.00 0.3614 . . 58 . . 'X-RAY DIFFRACTION' . 1.8862 1.9417 1276 0.2638 50.00 0.3187 . . 85 . . 'X-RAY DIFFRACTION' . 1.9417 2.0043 1766 0.2377 68.00 0.2743 . . 118 . . 'X-RAY DIFFRACTION' . 2.0043 2.0758 2166 0.2104 84.00 0.2721 . . 144 . . 'X-RAY DIFFRACTION' . 2.0758 2.1588 2419 0.1878 94.00 0.3060 . . 163 . . 'X-RAY DIFFRACTION' . 2.1588 2.2568 2552 0.1797 98.00 0.2335 . . 170 . . 'X-RAY DIFFRACTION' . 2.2568 2.3755 2538 0.1713 98.00 0.2219 . . 169 . . 'X-RAY DIFFRACTION' . 2.3755 2.5240 2582 0.1777 99.00 0.2356 . . 173 . . 'X-RAY DIFFRACTION' . 2.5240 2.7182 2596 0.1813 100.00 0.2518 . . 172 . . 'X-RAY DIFFRACTION' . 2.7182 2.9905 2621 0.1778 100.00 0.2600 . . 174 . . 'X-RAY DIFFRACTION' . 2.9905 3.4204 2652 0.1595 100.00 0.2069 . . 177 . . 'X-RAY DIFFRACTION' . 3.4204 4.2987 2654 0.1415 100.00 0.2104 . . 177 . . 'X-RAY DIFFRACTION' . 4.2987 17.4843 2775 0.1454 100.00 0.1904 . . 185 . . # _struct.entry_id 4KA2 _struct.title 'Crystal structure of CD4-mimetic miniprotein M48U12 in complex with HIV-1 YU2 gp120' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4KA2 _struct_keywords.pdbx_keywords 'Viral protein/INHIBITOR' _struct_keywords.text 'VIRAL PROTEIN-PEPTIDE complex, HIV-1, GP120, YU2, CD4 MIMIC, M48U12, Viral protein-INHIBITOR complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 4 ? L N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 45 ? ALA A 54 ? GLU A 64 ALA A 73 1 ? 10 HELX_P HELX_P2 2 ASN A 79 ? LEU A 97 ? ASN A 98 LEU A 116 1 ? 19 HELX_P HELX_P3 3 LYS A 227 ? GLY A 246 ? LYS A 335 GLY A 354 1 ? 20 HELX_P HELX_P4 4 ASP A 260 ? THR A 265 ? ASP A 368 THR A 373 1 ? 6 HELX_P HELX_P5 5 SER A 279 ? THR A 284 ? SER A 387 THR A 392 5 ? 6 HELX_P HELX_P6 6 MET A 359 ? TYR A 368 ? MET A 475 TYR A 484 1 ? 10 HELX_P HELX_P7 7 ASN B 2 ? SER B 12 ? ASN R 2 SER R 12 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 35 SG A ? ? 1_555 A CYS 55 SG ? ? A CYS 54 A CYS 74 1_555 ? ? ? ? ? ? ? 2.082 ? ? disulf2 disulf ? ? A CYS 100 SG A ? ? 1_555 A CYS 113 SG A ? A CYS 119 A CYS 205 1_555 ? ? ? ? ? ? ? 2.044 ? ? disulf3 disulf ? ? A CYS 126 SG A ? ? 1_555 A CYS 155 SG A ? A CYS 218 A CYS 247 1_555 ? ? ? ? ? ? ? 2.060 ? ? disulf4 disulf ? ? A CYS 136 SG ? ? ? 1_555 A CYS 147 SG ? ? A CYS 228 A CYS 239 1_555 ? ? ? ? ? ? ? 2.100 ? ? disulf5 disulf ? ? A CYS 204 SG ? ? ? 1_555 A CYS 223 SG ? ? A CYS 296 A CYS 331 1_555 ? ? ? ? ? ? ? 2.060 ? ? disulf6 disulf ? ? A CYS 270 SG ? ? ? 1_555 A CYS 329 SG A ? A CYS 378 A CYS 445 1_555 ? ? ? ? ? ? ? 2.063 ? ? disulf7 disulf ? ? A CYS 277 SG A ? ? 1_555 A CYS 302 SG A ? A CYS 385 A CYS 418 1_555 ? ? ? ? ? ? ? 2.042 ? ? disulf8 disulf ? ? B CYS 6 SG ? ? ? 1_555 B CYS 24 SG ? ? R CYS 6 R CYS 24 1_555 ? ? ? ? ? ? ? 2.108 ? ? disulf9 disulf ? ? B CYS 10 SG ? ? ? 1_555 B CYS 26 SG ? ? R CYS 10 R CYS 26 1_555 ? ? ? ? ? ? ? 2.049 ? ? covale1 covale one ? A ASN 142 ND2 ? ? ? 1_555 D NAG . C1 ? ? A ASN 234 A NAG 502 1_555 ? ? ? ? ? ? ? 1.449 ? N-Glycosylation covale2 covale one ? A ASN 149 ND2 ? ? ? 1_555 E NAG . C1 ? ? A ASN 241 A NAG 503 1_555 ? ? ? ? ? ? ? 1.458 ? N-Glycosylation covale3 covale one ? A ASN 170 ND2 ? ? ? 1_555 F NAG . C1 ? ? A ASN 262 A NAG 504 1_555 ? ? ? ? ? ? ? 1.439 ? N-Glycosylation covale4 covale one ? A ASN 184 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 276 A NAG 501 1_555 ? ? ? ? ? ? ? 1.458 ? N-Glycosylation covale5 covale one ? A ASN 197 ND2 ? ? ? 1_555 G NAG . C1 ? ? A ASN 289 A NAG 505 1_555 ? ? ? ? ? ? ? 1.443 ? N-Glycosylation covale6 covale one ? A ASN 203 ND2 ? ? ? 1_555 H NAG . C1 ? ? A ASN 295 A NAG 506 1_555 ? ? ? ? ? ? ? 1.436 ? N-Glycosylation covale7 covale one ? A ASN 278 ND2 ? ? ? 1_555 I NAG . C1 ? ? A ASN 386 A NAG 507 1_555 ? ? ? ? ? ? ? 1.438 ? N-Glycosylation covale8 covale one ? A ASN 332 ND2 ? ? ? 1_555 J NAG . C1 ? ? A ASN 448 A NAG 508 1_555 ? ? ? ? ? ? ? 1.437 ? N-Glycosylation covale9 covale both ? B MPT 1 C ? ? ? 1_555 B ASN 2 N ? ? R MPT 1 R ASN 2 1_555 ? ? ? ? ? ? ? 1.479 ? ? covale10 covale none ? B MPT 1 SG ? ? ? 1_555 B CYS 19 SG ? ? R MPT 1 R CYS 19 1_555 ? ? ? ? ? ? ? 2.187 ? ? covale11 covale both ? B ALA 20 C ? ? ? 1_555 B DPR 21 N ? ? R ALA 20 R DPR 21 1_555 ? ? ? ? ? ? ? 1.353 ? ? covale12 covale both ? B DPR 21 C ? ? ? 1_555 B THR 22 N ? ? R DPR 21 R THR 22 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale13 covale both ? B THR 22 C ? ? ? 1_555 B U3X 23 N ? ? R THR 22 R U3X 23 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale14 covale both ? B U3X 23 C ? ? ? 1_555 B CYS 24 N ? ? R U3X 23 R CYS 24 1_555 ? ? ? ? ? ? ? 1.378 ? ? covale15 covale both ? B VAL 27 C ? ? ? 1_555 B NH2 28 N ? ? R VAL 27 R NH2 28 1_555 ? ? ? ? ? ? ? 1.362 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 4 ? C ? 2 ? D ? 4 ? E ? 5 ? F ? 7 ? G ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 4 5 ? parallel F 1 2 ? anti-parallel F 2 3 ? anti-parallel F 4 5 ? anti-parallel F 5 6 ? anti-parallel F 6 7 ? anti-parallel G 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 CYS A 55 ? PRO A 57 ? CYS A 74 PRO A 76 A 2 PHE A 34 ? SER A 37 ? PHE A 53 SER A 56 A 3 HIS A 124 ? CYS A 126 ? HIS A 216 CYS A 218 B 1 VAL A 65 ? LEU A 67 ? VAL A 84 LEU A 86 B 2 VAL A 150 ? VAL A 153 ? VAL A 242 VAL A 245 B 3 PHE A 131 ? CYS A 136 ? PHE A 223 CYS A 228 B 4 TYR A 370 ? LYS A 374 ? TYR A 486 LYS A 490 C 1 GLU A 72 ? ASN A 75 ? GLU A 91 ASN A 94 C 2 THR A 144 ? CYS A 147 ? THR A 236 CYS A 239 D 1 SER A 107 ? THR A 110 ? SER A 199 THR A 202 D 2 VAL A 101 ? THR A 104 ? VAL A 120 THR A 123 D 3 LYS A 316 ? MET A 318 ? LYS A 432 MET A 434 D 4 ILE A 307 ? ASN A 309 ? ILE A 423 ASN A 425 E 1 LEU A 167 ? LEU A 169 ? LEU A 259 LEU A 261 E 2 ILE A 327 ? ARG A 340 ? ILE A 443 ARG A 456 E 3 ILE A 192 ? ARG A 206 ? ILE A 284 ARG A 298 E 4 THR A 349 ? PRO A 354 ? THR A 465 PRO A 470 E 5 THR A 250 ? PHE A 253 ? THR A 358 PHE A 361 F 1 VAL A 179 ? ARG A 181 ? VAL A 271 ARG A 273 F 2 ILE A 192 ? ARG A 206 ? ILE A 284 ARG A 298 F 3 ILE A 327 ? ARG A 340 ? ILE A 443 ARG A 456 F 4 GLN A 220 ? SER A 226 ? GLN A 328 SER A 334 F 5 ASN A 297 ? LYS A 305 ? ASN A 413 LYS A 421 F 6 GLU A 273 ? CYS A 277 ? GLU A 381 CYS A 385 F 7 HIS A 266 ? CYS A 270 ? HIS A 374 CYS A 378 G 1 LEU B 16 ? ALA B 20 ? LEU R 16 ALA R 20 G 2 U3X B 23 ? VAL B 27 ? U3X R 23 VAL R 27 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 56 ? O VAL A 75 N CYS A 35 ? N CYS A 54 A 2 3 N PHE A 34 ? N PHE A 53 O CYS A 126 ? O CYS A 218 B 1 2 N LEU A 67 ? N LEU A 86 O VAL A 150 ? O VAL A 242 B 2 3 O SER A 151 ? O SER A 243 N LYS A 135 ? N LYS A 227 B 3 4 N LEU A 134 ? N LEU A 226 O LYS A 371 ? O LYS A 487 C 1 2 N PHE A 74 ? N PHE A 93 O GLY A 145 ? O GLY A 237 D 1 2 O ILE A 109 ? O ILE A 201 N LYS A 102 ? N LYS A 121 D 2 3 N LEU A 103 ? N LEU A 122 O LYS A 316 ? O LYS A 432 D 3 4 O ALA A 317 ? O ALA A 433 N ILE A 308 ? N ILE A 424 E 1 2 N LEU A 168 ? N LEU A 260 O GLY A 335 ? O GLY A 451 E 2 3 O SER A 331 ? O SER A 447 N ILE A 202 ? N ILE A 294 E 4 5 O GLU A 350 ? O GLU A 466 N ILE A 252 ? N ILE A 360 F 1 2 N VAL A 179 ? N VAL A 271 O GLN A 195 ? O GLN A 287 F 2 3 N ILE A 202 ? N ILE A 294 O SER A 331 ? O SER A 447 F 4 5 N CYS A 223 ? N CYS A 331 O LEU A 300 ? O LEU A 416 F 5 6 O ARG A 303 ? O ARG A 419 N TYR A 276 ? N TYR A 384 F 6 7 O CYS A 277 ? O CYS A 385 N HIS A 266 ? N HIS A 374 G 1 2 N ALA B 20 ? N ALA R 20 O U3X B 23 ? O U3X R 23 # _database_PDB_matrix.entry_id 4KA2 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4KA2 _atom_sites.fract_transf_matrix[1][1] 0.015535 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.006118 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012793 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 20 ? ? ? A . n A 1 2 PRO 2 21 ? ? ? A . n A 1 3 MET 3 22 ? ? ? A . n A 1 4 GLY 4 23 ? ? ? A . n A 1 5 SER 5 24 ? ? ? A . n A 1 6 LEU 6 25 ? ? ? A . n A 1 7 GLN 7 26 ? ? ? A . n A 1 8 PRO 8 27 ? ? ? A . n A 1 9 LEU 9 28 ? ? ? A . n A 1 10 ALA 10 29 ? ? ? A . n A 1 11 THR 11 30 ? ? ? A . n A 1 12 LEU 12 31 ? ? ? A . n A 1 13 TYR 13 32 ? ? ? A . n A 1 14 LEU 14 33 ? ? ? A . n A 1 15 LEU 15 34 ? ? ? A . n A 1 16 GLY 16 35 ? ? ? A . n A 1 17 MET 17 36 ? ? ? A . n A 1 18 LEU 18 37 ? ? ? A . n A 1 19 VAL 19 38 ? ? ? A . n A 1 20 ALA 20 39 ? ? ? A . n A 1 21 SER 21 40 ? ? ? A . n A 1 22 VAL 22 41 ? ? ? A . n A 1 23 LEU 23 42 ? ? ? A . n A 1 24 ALA 24 43 ? ? ? A . n A 1 25 VAL 25 44 44 VAL VAL A . n A 1 26 TRP 26 45 45 TRP TRP A . n A 1 27 LYS 27 46 46 LYS LYS A . n A 1 28 GLU 28 47 47 GLU GLU A . n A 1 29 ALA 29 48 48 ALA ALA A . n A 1 30 THR 30 49 49 THR THR A . n A 1 31 THR 31 50 50 THR THR A . n A 1 32 THR 32 51 51 THR THR A . n A 1 33 LEU 33 52 52 LEU LEU A . n A 1 34 PHE 34 53 53 PHE PHE A . n A 1 35 CYS 35 54 54 CYS CYS A . n A 1 36 ALA 36 55 55 ALA ALA A . n A 1 37 SER 37 56 56 SER SER A . n A 1 38 ASP 38 57 57 ASP ASP A . n A 1 39 ALA 39 58 58 ALA ALA A . n A 1 40 LYS 40 59 59 LYS LYS A . n A 1 41 ALA 41 60 60 ALA ALA A . n A 1 42 TYR 42 61 61 TYR TYR A . n A 1 43 ASP 43 62 62 ASP ASP A . n A 1 44 THR 44 63 63 THR THR A . n A 1 45 GLU 45 64 64 GLU GLU A . n A 1 46 VAL 46 65 65 VAL VAL A . n A 1 47 HIS 47 66 66 HIS HIS A . n A 1 48 ASN 48 67 67 ASN ASN A . n A 1 49 VAL 49 68 68 VAL VAL A . n A 1 50 TRP 50 69 69 TRP TRP A . n A 1 51 ALA 51 70 70 ALA ALA A . n A 1 52 THR 52 71 71 THR THR A . n A 1 53 HIS 53 72 72 HIS HIS A . n A 1 54 ALA 54 73 73 ALA ALA A . n A 1 55 CYS 55 74 74 CYS CYS A . n A 1 56 VAL 56 75 75 VAL VAL A . n A 1 57 PRO 57 76 76 PRO PRO A . n A 1 58 THR 58 77 77 THR THR A . n A 1 59 ASP 59 78 78 ASP ASP A . n A 1 60 PRO 60 79 79 PRO PRO A . n A 1 61 ASN 61 80 80 ASN ASN A . n A 1 62 PRO 62 81 81 PRO PRO A . n A 1 63 GLN 63 82 82 GLN GLN A . n A 1 64 GLU 64 83 83 GLU GLU A . n A 1 65 VAL 65 84 84 VAL VAL A . n A 1 66 LYS 66 85 85 LYS LYS A . n A 1 67 LEU 67 86 86 LEU LEU A . n A 1 68 GLU 68 87 87 GLU GLU A . n A 1 69 ASN 69 88 88 ASN ASN A . n A 1 70 VAL 70 89 89 VAL VAL A . n A 1 71 THR 71 90 90 THR THR A . n A 1 72 GLU 72 91 91 GLU GLU A . n A 1 73 ASN 73 92 92 ASN ASN A . n A 1 74 PHE 74 93 93 PHE PHE A . n A 1 75 ASN 75 94 94 ASN ASN A . n A 1 76 MET 76 95 95 MET MET A . n A 1 77 TRP 77 96 96 TRP TRP A . n A 1 78 LYS 78 97 97 LYS LYS A . n A 1 79 ASN 79 98 98 ASN ASN A . n A 1 80 ASN 80 99 99 ASN ASN A . n A 1 81 MET 81 100 100 MET MET A . n A 1 82 VAL 82 101 101 VAL VAL A . n A 1 83 GLU 83 102 102 GLU GLU A . n A 1 84 GLN 84 103 103 GLN GLN A . n A 1 85 MET 85 104 104 MET MET A . n A 1 86 HIS 86 105 105 HIS HIS A . n A 1 87 GLU 87 106 106 GLU GLU A . n A 1 88 ASP 88 107 107 ASP ASP A . n A 1 89 ILE 89 108 108 ILE ILE A . n A 1 90 ILE 90 109 109 ILE ILE A . n A 1 91 SER 91 110 110 SER SER A . n A 1 92 LEU 92 111 111 LEU LEU A . n A 1 93 TRP 93 112 112 TRP TRP A . n A 1 94 ASP 94 113 113 ASP ASP A . n A 1 95 GLN 95 114 114 GLN GLN A . n A 1 96 SER 96 115 115 SER SER A . n A 1 97 LEU 97 116 116 LEU LEU A . n A 1 98 LYS 98 117 117 LYS LYS A . n A 1 99 PRO 99 118 118 PRO PRO A . n A 1 100 CYS 100 119 119 CYS CYS A . n A 1 101 VAL 101 120 120 VAL VAL A . n A 1 102 LYS 102 121 121 LYS LYS A . n A 1 103 LEU 103 122 122 LEU LEU A . n A 1 104 THR 104 123 123 THR THR A . n A 1 105 GLY 105 124 124 GLY GLY A . n A 1 106 GLY 106 198 198 GLY GLY A . n A 1 107 SER 107 199 199 SER SER A . n A 1 108 VAL 108 200 200 VAL VAL A . n A 1 109 ILE 109 201 201 ILE ILE A . n A 1 110 THR 110 202 202 THR THR A . n A 1 111 GLN 111 203 203 GLN GLN A . n A 1 112 ALA 112 204 204 ALA ALA A . n A 1 113 CYS 113 205 205 CYS CYS A . n A 1 114 PRO 114 206 206 PRO PRO A . n A 1 115 LYS 115 207 207 LYS LYS A . n A 1 116 VAL 116 208 208 VAL VAL A . n A 1 117 SER 117 209 209 SER SER A . n A 1 118 PHE 118 210 210 PHE PHE A . n A 1 119 GLU 119 211 211 GLU GLU A . n A 1 120 PRO 120 212 212 PRO PRO A . n A 1 121 ILE 121 213 213 ILE ILE A . n A 1 122 PRO 122 214 214 PRO PRO A . n A 1 123 ILE 123 215 215 ILE ILE A . n A 1 124 HIS 124 216 216 HIS HIS A . n A 1 125 TYR 125 217 217 TYR TYR A . n A 1 126 CYS 126 218 218 CYS CYS A . n A 1 127 ALA 127 219 219 ALA ALA A . n A 1 128 PRO 128 220 220 PRO PRO A . n A 1 129 ALA 129 221 221 ALA ALA A . n A 1 130 GLY 130 222 222 GLY GLY A . n A 1 131 PHE 131 223 223 PHE PHE A . n A 1 132 ALA 132 224 224 ALA ALA A . n A 1 133 ILE 133 225 225 ILE ILE A . n A 1 134 LEU 134 226 226 LEU LEU A . n A 1 135 LYS 135 227 227 LYS LYS A . n A 1 136 CYS 136 228 228 CYS CYS A . n A 1 137 ASN 137 229 229 ASN ASN A . n A 1 138 ASP 138 230 230 ASP ASP A . n A 1 139 LYS 139 231 231 LYS LYS A . n A 1 140 LYS 140 232 232 LYS LYS A . n A 1 141 PHE 141 233 233 PHE PHE A . n A 1 142 ASN 142 234 234 ASN ASN A . n A 1 143 GLY 143 235 235 GLY GLY A . n A 1 144 THR 144 236 236 THR THR A . n A 1 145 GLY 145 237 237 GLY GLY A . n A 1 146 PRO 146 238 238 PRO PRO A . n A 1 147 CYS 147 239 239 CYS CYS A . n A 1 148 THR 148 240 240 THR THR A . n A 1 149 ASN 149 241 241 ASN ASN A . n A 1 150 VAL 150 242 242 VAL VAL A . n A 1 151 SER 151 243 243 SER SER A . n A 1 152 THR 152 244 244 THR THR A . n A 1 153 VAL 153 245 245 VAL VAL A . n A 1 154 GLN 154 246 246 GLN GLN A . n A 1 155 CYS 155 247 247 CYS CYS A . n A 1 156 THR 156 248 248 THR THR A . n A 1 157 HIS 157 249 249 HIS HIS A . n A 1 158 GLY 158 250 250 GLY GLY A . n A 1 159 ILE 159 251 251 ILE ILE A . n A 1 160 ARG 160 252 252 ARG ARG A . n A 1 161 PRO 161 253 253 PRO PRO A . n A 1 162 VAL 162 254 254 VAL VAL A . n A 1 163 VAL 163 255 255 VAL VAL A . n A 1 164 SER 164 256 256 SER SER A . n A 1 165 THR 165 257 257 THR THR A . n A 1 166 GLN 166 258 258 GLN GLN A . n A 1 167 LEU 167 259 259 LEU LEU A . n A 1 168 LEU 168 260 260 LEU LEU A . n A 1 169 LEU 169 261 261 LEU LEU A . n A 1 170 ASN 170 262 262 ASN ASN A . n A 1 171 GLY 171 263 263 GLY GLY A . n A 1 172 SER 172 264 264 SER SER A . n A 1 173 LEU 173 265 265 LEU LEU A . n A 1 174 ALA 174 266 266 ALA ALA A . n A 1 175 GLU 175 267 267 GLU GLU A . n A 1 176 GLU 176 268 268 GLU GLU A . n A 1 177 GLU 177 269 269 GLU GLU A . n A 1 178 ILE 178 270 270 ILE ILE A . n A 1 179 VAL 179 271 271 VAL VAL A . n A 1 180 ILE 180 272 272 ILE ILE A . n A 1 181 ARG 181 273 273 ARG ARG A . n A 1 182 SER 182 274 274 SER SER A . n A 1 183 GLU 183 275 275 GLU GLU A . n A 1 184 ASN 184 276 276 ASN ASN A . n A 1 185 PHE 185 277 277 PHE PHE A . n A 1 186 THR 186 278 278 THR THR A . n A 1 187 ASN 187 279 279 ASN ASN A . n A 1 188 ASN 188 280 280 ASN ASN A . n A 1 189 ALA 189 281 281 ALA ALA A . n A 1 190 LYS 190 282 282 LYS LYS A . n A 1 191 THR 191 283 283 THR THR A . n A 1 192 ILE 192 284 284 ILE ILE A . n A 1 193 ILE 193 285 285 ILE ILE A . n A 1 194 VAL 194 286 286 VAL VAL A . n A 1 195 GLN 195 287 287 GLN GLN A . n A 1 196 LEU 196 288 288 LEU LEU A . n A 1 197 ASN 197 289 289 ASN ASN A . n A 1 198 GLU 198 290 290 GLU GLU A . n A 1 199 SER 199 291 291 SER SER A . n A 1 200 VAL 200 292 292 VAL VAL A . n A 1 201 VAL 201 293 293 VAL VAL A . n A 1 202 ILE 202 294 294 ILE ILE A . n A 1 203 ASN 203 295 295 ASN ASN A . n A 1 204 CYS 204 296 296 CYS CYS A . n A 1 205 THR 205 297 297 THR THR A . n A 1 206 ARG 206 298 298 ARG ARG A . n A 1 207 PRO 207 299 299 PRO PRO A . n A 1 208 ASN 208 300 300 ASN ASN A . n A 1 209 ASN 209 301 301 ASN ASN A . n A 1 210 GLY 210 318 ? ? ? A . n A 1 211 GLY 211 319 ? ? ? A . n A 1 212 SER 212 320 ? ? ? A . n A 1 213 GLY 213 321 ? ? ? A . n A 1 214 SER 214 322 ? ? ? A . n A 1 215 GLY 215 323 ? ? ? A . n A 1 216 GLY 216 324 324 GLY GLY A . n A 1 217 ASP 217 325 325 ASP ASP A . n A 1 218 ILE 218 326 326 ILE ILE A . n A 1 219 ARG 219 327 327 ARG ARG A . n A 1 220 GLN 220 328 328 GLN GLN A . n A 1 221 ALA 221 329 329 ALA ALA A . n A 1 222 HIS 222 330 330 HIS HIS A . n A 1 223 CYS 223 331 331 CYS CYS A . n A 1 224 ASN 224 332 332 ASN ASN A . n A 1 225 LEU 225 333 333 LEU LEU A . n A 1 226 SER 226 334 334 SER SER A . n A 1 227 LYS 227 335 335 LYS LYS A . n A 1 228 THR 228 336 336 THR THR A . n A 1 229 GLN 229 337 337 GLN GLN A . n A 1 230 TRP 230 338 338 TRP TRP A . n A 1 231 GLU 231 339 339 GLU GLU A . n A 1 232 ASN 232 340 340 ASN ASN A . n A 1 233 THR 233 341 341 THR THR A . n A 1 234 LEU 234 342 342 LEU LEU A . n A 1 235 GLU 235 343 343 GLU GLU A . n A 1 236 GLN 236 344 344 GLN GLN A . n A 1 237 ILE 237 345 345 ILE ILE A . n A 1 238 ALA 238 346 346 ALA ALA A . n A 1 239 ILE 239 347 347 ILE ILE A . n A 1 240 LYS 240 348 348 LYS LYS A . n A 1 241 LEU 241 349 349 LEU LEU A . n A 1 242 LYS 242 350 350 LYS LYS A . n A 1 243 GLU 243 351 351 GLU GLU A . n A 1 244 GLN 244 352 352 GLN GLN A . n A 1 245 PHE 245 353 353 PHE PHE A . n A 1 246 GLY 246 354 354 GLY GLY A . n A 1 247 ASN 247 355 355 ASN ASN A . n A 1 248 ASN 248 356 356 ASN ASN A . n A 1 249 LYS 249 357 357 LYS LYS A . n A 1 250 THR 250 358 358 THR THR A . n A 1 251 ILE 251 359 359 ILE ILE A . n A 1 252 ILE 252 360 360 ILE ILE A . n A 1 253 PHE 253 361 361 PHE PHE A . n A 1 254 ASN 254 362 362 ASN ASN A . n A 1 255 PRO 255 363 363 PRO PRO A . n A 1 256 SER 256 364 364 SER SER A . n A 1 257 SER 257 365 365 SER SER A . n A 1 258 GLY 258 366 366 GLY GLY A . n A 1 259 GLY 259 367 367 GLY GLY A . n A 1 260 ASP 260 368 368 ASP ASP A . n A 1 261 PRO 261 369 369 PRO PRO A . n A 1 262 GLU 262 370 370 GLU GLU A . n A 1 263 ILE 263 371 371 ILE ILE A . n A 1 264 VAL 264 372 372 VAL VAL A . n A 1 265 THR 265 373 373 THR THR A . n A 1 266 HIS 266 374 374 HIS HIS A . n A 1 267 SER 267 375 375 SER SER A . n A 1 268 PHE 268 376 376 PHE PHE A . n A 1 269 ASN 269 377 377 ASN ASN A . n A 1 270 CYS 270 378 378 CYS CYS A . n A 1 271 GLY 271 379 379 GLY GLY A . n A 1 272 GLY 272 380 380 GLY GLY A . n A 1 273 GLU 273 381 381 GLU GLU A . n A 1 274 PHE 274 382 382 PHE PHE A . n A 1 275 PHE 275 383 383 PHE PHE A . n A 1 276 TYR 276 384 384 TYR TYR A . n A 1 277 CYS 277 385 385 CYS CYS A . n A 1 278 ASN 278 386 386 ASN ASN A . n A 1 279 SER 279 387 387 SER SER A . n A 1 280 THR 280 388 388 THR THR A . n A 1 281 GLN 281 389 389 GLN GLN A . n A 1 282 LEU 282 390 390 LEU LEU A . n A 1 283 PHE 283 391 391 PHE PHE A . n A 1 284 THR 284 392 392 THR THR A . n A 1 285 TRP 285 393 393 TRP TRP A . n A 1 286 ASN 286 394 394 ASN ASN A . n A 1 287 ASP 287 395 395 ASP ASP A . n A 1 288 THR 288 396 396 THR THR A . n A 1 289 ARG 289 405 ? ? ? A . n A 1 290 LYS 290 406 ? ? ? A . n A 1 291 LEU 291 407 ? ? ? A . n A 1 292 ASN 292 408 ? ? ? A . n A 1 293 ASN 293 409 ? ? ? A . n A 1 294 THR 294 410 ? ? ? A . n A 1 295 GLY 295 411 411 GLY GLY A . n A 1 296 ARG 296 412 412 ARG ARG A . n A 1 297 ASN 297 413 413 ASN ASN A . n A 1 298 ILE 298 414 414 ILE ILE A . n A 1 299 THR 299 415 415 THR THR A . n A 1 300 LEU 300 416 416 LEU LEU A . n A 1 301 PRO 301 417 417 PRO PRO A . n A 1 302 CYS 302 418 418 CYS CYS A . n A 1 303 ARG 303 419 419 ARG ARG A . n A 1 304 ILE 304 420 420 ILE ILE A . n A 1 305 LYS 305 421 421 LYS LYS A . n A 1 306 GLN 306 422 422 GLN GLN A . n A 1 307 ILE 307 423 423 ILE ILE A . n A 1 308 ILE 308 424 424 ILE ILE A . n A 1 309 ASN 309 425 425 ASN ASN A . n A 1 310 MET 310 426 426 MET MET A . n A 1 311 TRP 311 427 427 TRP TRP A . n A 1 312 GLN 312 428 428 GLN GLN A . n A 1 313 GLU 313 429 429 GLU GLU A . n A 1 314 VAL 314 430 430 VAL VAL A . n A 1 315 GLY 315 431 431 GLY GLY A . n A 1 316 LYS 316 432 432 LYS LYS A . n A 1 317 ALA 317 433 433 ALA ALA A . n A 1 318 MET 318 434 434 MET MET A . n A 1 319 TYR 319 435 435 TYR TYR A . n A 1 320 ALA 320 436 436 ALA ALA A . n A 1 321 PRO 321 437 437 PRO PRO A . n A 1 322 PRO 322 438 438 PRO PRO A . n A 1 323 ILE 323 439 439 ILE ILE A . n A 1 324 ARG 324 440 440 ARG ARG A . n A 1 325 GLY 325 441 441 GLY GLY A . n A 1 326 GLN 326 442 442 GLN GLN A . n A 1 327 ILE 327 443 443 ILE ILE A . n A 1 328 ARG 328 444 444 ARG ARG A . n A 1 329 CYS 329 445 445 CYS CYS A . n A 1 330 SER 330 446 446 SER SER A . n A 1 331 SER 331 447 447 SER SER A . n A 1 332 ASN 332 448 448 ASN ASN A . n A 1 333 ILE 333 449 449 ILE ILE A . n A 1 334 THR 334 450 450 THR THR A . n A 1 335 GLY 335 451 451 GLY GLY A . n A 1 336 LEU 336 452 452 LEU LEU A . n A 1 337 LEU 337 453 453 LEU LEU A . n A 1 338 LEU 338 454 454 LEU LEU A . n A 1 339 THR 339 455 455 THR THR A . n A 1 340 ARG 340 456 456 ARG ARG A . n A 1 341 ASP 341 457 457 ASP ASP A . n A 1 342 GLY 342 458 458 GLY GLY A . n A 1 343 GLY 343 459 459 GLY GLY A . n A 1 344 LYS 344 460 ? ? ? A . n A 1 345 ASP 345 461 ? ? ? A . n A 1 346 THR 346 462 ? ? ? A . n A 1 347 ASN 347 463 463 ASN ASN A . n A 1 348 GLY 348 464 464 GLY GLY A . n A 1 349 THR 349 465 465 THR THR A . n A 1 350 GLU 350 466 466 GLU GLU A . n A 1 351 ILE 351 467 467 ILE ILE A . n A 1 352 PHE 352 468 468 PHE PHE A . n A 1 353 ARG 353 469 469 ARG ARG A . n A 1 354 PRO 354 470 470 PRO PRO A . n A 1 355 GLY 355 471 471 GLY GLY A . n A 1 356 GLY 356 472 472 GLY GLY A . n A 1 357 GLY 357 473 473 GLY GLY A . n A 1 358 ASP 358 474 474 ASP ASP A . n A 1 359 MET 359 475 475 MET MET A . n A 1 360 ARG 360 476 476 ARG ARG A . n A 1 361 ASP 361 477 477 ASP ASP A . n A 1 362 ASN 362 478 478 ASN ASN A . n A 1 363 TRP 363 479 479 TRP TRP A . n A 1 364 ARG 364 480 480 ARG ARG A . n A 1 365 SER 365 481 481 SER SER A . n A 1 366 GLU 366 482 482 GLU GLU A . n A 1 367 LEU 367 483 483 LEU LEU A . n A 1 368 TYR 368 484 484 TYR TYR A . n A 1 369 LYS 369 485 485 LYS LYS A . n A 1 370 TYR 370 486 486 TYR TYR A . n A 1 371 LYS 371 487 487 LYS LYS A . n A 1 372 VAL 372 488 488 VAL VAL A . n A 1 373 VAL 373 489 489 VAL VAL A . n A 1 374 LYS 374 490 490 LYS LYS A . n A 1 375 ILE 375 491 491 ILE ILE A . n A 1 376 GLU 376 492 492 GLU GLU A . n B 2 1 MPT 1 1 1 MPT MPT R . n B 2 2 ASN 2 2 2 ASN ASN R . n B 2 3 LEU 3 3 3 LEU LEU R . n B 2 4 HIS 4 4 4 HIS HIS R . n B 2 5 PHE 5 5 5 PHE PHE R . n B 2 6 CYS 6 6 6 CYS CYS R . n B 2 7 GLN 7 7 7 GLN GLN R . n B 2 8 LEU 8 8 8 LEU LEU R . n B 2 9 ARG 9 9 9 ARG ARG R . n B 2 10 CYS 10 10 10 CYS CYS R . n B 2 11 LYS 11 11 11 LYS LYS R . n B 2 12 SER 12 12 12 SER SER R . n B 2 13 LEU 13 13 13 LEU LEU R . n B 2 14 GLY 14 14 14 GLY GLY R . n B 2 15 LEU 15 15 15 LEU LEU R . n B 2 16 LEU 16 16 16 LEU LEU R . n B 2 17 GLY 17 17 17 GLY GLY R . n B 2 18 ARG 18 18 18 ARG ARG R . n B 2 19 CYS 19 19 19 CYS CYS R . n B 2 20 ALA 20 20 20 ALA ALA R . n B 2 21 DPR 21 21 21 DPR DPR R . n B 2 22 THR 22 22 22 THR THR R . n B 2 23 U3X 23 23 23 U3X U3X R . n B 2 24 CYS 24 24 24 CYS CYS R . n B 2 25 ALA 25 25 25 ALA ALA R . n B 2 26 CYS 26 26 26 CYS CYS R . n B 2 27 VAL 27 27 27 VAL VAL R . n B 2 28 NH2 28 28 28 NH2 NH2 R . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG 1 501 501 NAG NAG A . D 3 NAG 1 502 503 NAG NAG A . E 3 NAG 1 503 504 NAG NAG A . F 3 NAG 1 504 505 NAG NAG A . G 3 NAG 1 505 506 NAG NAG A . H 3 NAG 1 506 507 NAG NAG A . I 3 NAG 1 507 508 NAG NAG A . J 3 NAG 1 508 509 NAG NAG A . K 4 HOH 1 601 601 HOH HOH A . K 4 HOH 2 602 602 HOH HOH A . K 4 HOH 3 603 603 HOH HOH A . K 4 HOH 4 604 604 HOH HOH A . K 4 HOH 5 605 605 HOH HOH A . K 4 HOH 6 606 606 HOH HOH A . K 4 HOH 7 607 607 HOH HOH A . K 4 HOH 8 608 608 HOH HOH A . K 4 HOH 9 609 609 HOH HOH A . K 4 HOH 10 610 610 HOH HOH A . K 4 HOH 11 611 611 HOH HOH A . K 4 HOH 12 612 612 HOH HOH A . K 4 HOH 13 613 613 HOH HOH A . K 4 HOH 14 614 614 HOH HOH A . K 4 HOH 15 615 615 HOH HOH A . K 4 HOH 16 616 616 HOH HOH A . K 4 HOH 17 617 617 HOH HOH A . K 4 HOH 18 618 618 HOH HOH A . K 4 HOH 19 619 619 HOH HOH A . K 4 HOH 20 620 620 HOH HOH A . K 4 HOH 21 621 621 HOH HOH A . K 4 HOH 22 622 622 HOH HOH A . K 4 HOH 23 623 623 HOH HOH A . K 4 HOH 24 624 624 HOH HOH A . K 4 HOH 25 625 625 HOH HOH A . K 4 HOH 26 626 626 HOH HOH A . K 4 HOH 27 627 627 HOH HOH A . K 4 HOH 28 628 628 HOH HOH A . K 4 HOH 29 629 629 HOH HOH A . K 4 HOH 30 630 630 HOH HOH A . K 4 HOH 31 631 631 HOH HOH A . K 4 HOH 32 632 632 HOH HOH A . K 4 HOH 33 633 633 HOH HOH A . K 4 HOH 34 634 634 HOH HOH A . K 4 HOH 35 635 635 HOH HOH A . K 4 HOH 36 636 636 HOH HOH A . K 4 HOH 37 637 637 HOH HOH A . K 4 HOH 38 638 638 HOH HOH A . K 4 HOH 39 639 639 HOH HOH A . K 4 HOH 40 640 640 HOH HOH A . K 4 HOH 41 641 641 HOH HOH A . K 4 HOH 42 642 642 HOH HOH A . K 4 HOH 43 643 643 HOH HOH A . K 4 HOH 44 644 644 HOH HOH A . K 4 HOH 45 645 645 HOH HOH A . K 4 HOH 46 646 646 HOH HOH A . K 4 HOH 47 647 647 HOH HOH A . K 4 HOH 48 648 648 HOH HOH A . K 4 HOH 49 649 649 HOH HOH A . K 4 HOH 50 650 650 HOH HOH A . K 4 HOH 51 651 651 HOH HOH A . K 4 HOH 52 652 652 HOH HOH A . K 4 HOH 53 653 653 HOH HOH A . K 4 HOH 54 654 654 HOH HOH A . K 4 HOH 55 655 655 HOH HOH A . K 4 HOH 56 656 656 HOH HOH A . K 4 HOH 57 657 657 HOH HOH A . K 4 HOH 58 658 658 HOH HOH A . K 4 HOH 59 659 659 HOH HOH A . K 4 HOH 60 660 660 HOH HOH A . K 4 HOH 61 661 661 HOH HOH A . K 4 HOH 62 662 662 HOH HOH A . K 4 HOH 63 663 663 HOH HOH A . K 4 HOH 64 664 664 HOH HOH A . K 4 HOH 65 665 665 HOH HOH A . K 4 HOH 66 666 666 HOH HOH A . K 4 HOH 67 667 667 HOH HOH A . K 4 HOH 68 668 668 HOH HOH A . K 4 HOH 69 669 669 HOH HOH A . K 4 HOH 70 670 670 HOH HOH A . K 4 HOH 71 671 671 HOH HOH A . K 4 HOH 72 672 672 HOH HOH A . K 4 HOH 73 673 673 HOH HOH A . K 4 HOH 74 674 674 HOH HOH A . K 4 HOH 75 675 675 HOH HOH A . K 4 HOH 76 676 676 HOH HOH A . K 4 HOH 77 677 677 HOH HOH A . K 4 HOH 78 678 678 HOH HOH A . K 4 HOH 79 679 679 HOH HOH A . K 4 HOH 80 680 680 HOH HOH A . K 4 HOH 81 681 681 HOH HOH A . K 4 HOH 82 682 682 HOH HOH A . K 4 HOH 83 683 683 HOH HOH A . K 4 HOH 84 684 684 HOH HOH A . K 4 HOH 85 685 685 HOH HOH A . K 4 HOH 86 686 686 HOH HOH A . K 4 HOH 87 687 687 HOH HOH A . K 4 HOH 88 688 688 HOH HOH A . K 4 HOH 89 689 689 HOH HOH A . K 4 HOH 90 690 690 HOH HOH A . K 4 HOH 91 691 691 HOH HOH A . K 4 HOH 92 692 692 HOH HOH A . K 4 HOH 93 693 693 HOH HOH A . K 4 HOH 94 694 694 HOH HOH A . K 4 HOH 95 695 695 HOH HOH A . K 4 HOH 96 696 696 HOH HOH A . K 4 HOH 97 697 697 HOH HOH A . K 4 HOH 98 698 698 HOH HOH A . K 4 HOH 99 699 699 HOH HOH A . K 4 HOH 100 700 700 HOH HOH A . K 4 HOH 101 701 701 HOH HOH A . K 4 HOH 102 702 702 HOH HOH A . K 4 HOH 103 703 703 HOH HOH A . K 4 HOH 104 704 704 HOH HOH A . K 4 HOH 105 705 705 HOH HOH A . K 4 HOH 106 706 706 HOH HOH A . K 4 HOH 107 707 707 HOH HOH A . K 4 HOH 108 708 708 HOH HOH A . K 4 HOH 109 709 709 HOH HOH A . K 4 HOH 110 710 710 HOH HOH A . K 4 HOH 111 711 711 HOH HOH A . K 4 HOH 112 712 712 HOH HOH A . K 4 HOH 113 713 713 HOH HOH A . K 4 HOH 114 714 714 HOH HOH A . K 4 HOH 115 715 715 HOH HOH A . K 4 HOH 116 716 716 HOH HOH A . K 4 HOH 117 717 717 HOH HOH A . K 4 HOH 118 718 718 HOH HOH A . K 4 HOH 119 719 719 HOH HOH A . K 4 HOH 120 720 720 HOH HOH A . K 4 HOH 121 721 721 HOH HOH A . K 4 HOH 122 722 722 HOH HOH A . K 4 HOH 123 723 723 HOH HOH A . K 4 HOH 124 724 724 HOH HOH A . K 4 HOH 125 725 725 HOH HOH A . K 4 HOH 126 726 726 HOH HOH A . K 4 HOH 127 727 727 HOH HOH A . K 4 HOH 128 728 728 HOH HOH A . K 4 HOH 129 729 729 HOH HOH A . K 4 HOH 130 730 730 HOH HOH A . K 4 HOH 131 731 731 HOH HOH A . K 4 HOH 132 732 732 HOH HOH A . K 4 HOH 133 733 733 HOH HOH A . K 4 HOH 134 734 734 HOH HOH A . K 4 HOH 135 735 735 HOH HOH A . K 4 HOH 136 736 736 HOH HOH A . K 4 HOH 137 737 737 HOH HOH A . K 4 HOH 138 738 738 HOH HOH A . K 4 HOH 139 739 739 HOH HOH A . K 4 HOH 140 740 740 HOH HOH A . K 4 HOH 141 741 741 HOH HOH A . K 4 HOH 142 742 742 HOH HOH A . K 4 HOH 143 743 743 HOH HOH A . K 4 HOH 144 744 744 HOH HOH A . K 4 HOH 145 745 745 HOH HOH A . K 4 HOH 146 746 746 HOH HOH A . K 4 HOH 147 747 747 HOH HOH A . K 4 HOH 148 748 748 HOH HOH A . K 4 HOH 149 749 749 HOH HOH A . K 4 HOH 150 750 750 HOH HOH A . K 4 HOH 151 751 751 HOH HOH A . K 4 HOH 152 752 752 HOH HOH A . K 4 HOH 153 753 753 HOH HOH A . K 4 HOH 154 754 754 HOH HOH A . K 4 HOH 155 755 755 HOH HOH A . K 4 HOH 156 756 756 HOH HOH A . K 4 HOH 157 757 757 HOH HOH A . K 4 HOH 158 758 758 HOH HOH A . K 4 HOH 159 759 759 HOH HOH A . K 4 HOH 160 760 760 HOH HOH A . K 4 HOH 161 761 761 HOH HOH A . K 4 HOH 162 762 762 HOH HOH A . K 4 HOH 163 763 763 HOH HOH A . K 4 HOH 164 764 764 HOH HOH A . K 4 HOH 165 765 765 HOH HOH A . K 4 HOH 166 766 766 HOH HOH A . K 4 HOH 167 767 767 HOH HOH A . K 4 HOH 168 768 768 HOH HOH A . K 4 HOH 169 769 769 HOH HOH A . K 4 HOH 170 770 770 HOH HOH A . K 4 HOH 171 771 771 HOH HOH A . K 4 HOH 172 772 772 HOH HOH A . K 4 HOH 173 773 773 HOH HOH A . K 4 HOH 174 774 774 HOH HOH A . K 4 HOH 175 775 775 HOH HOH A . K 4 HOH 176 776 776 HOH HOH A . K 4 HOH 177 777 777 HOH HOH A . K 4 HOH 178 778 778 HOH HOH A . K 4 HOH 179 779 779 HOH HOH A . K 4 HOH 180 780 780 HOH HOH A . K 4 HOH 181 781 781 HOH HOH A . K 4 HOH 182 782 782 HOH HOH A . K 4 HOH 183 783 783 HOH HOH A . K 4 HOH 184 784 784 HOH HOH A . K 4 HOH 185 785 785 HOH HOH A . K 4 HOH 186 786 786 HOH HOH A . K 4 HOH 187 787 787 HOH HOH A . K 4 HOH 188 788 788 HOH HOH A . K 4 HOH 189 789 789 HOH HOH A . K 4 HOH 190 790 790 HOH HOH A . K 4 HOH 191 791 791 HOH HOH A . K 4 HOH 192 792 792 HOH HOH A . K 4 HOH 193 793 793 HOH HOH A . K 4 HOH 194 794 794 HOH HOH A . K 4 HOH 195 795 795 HOH HOH A . K 4 HOH 196 796 796 HOH HOH A . K 4 HOH 197 797 797 HOH HOH A . K 4 HOH 198 798 798 HOH HOH A . K 4 HOH 199 799 799 HOH HOH A . K 4 HOH 200 800 800 HOH HOH A . K 4 HOH 201 801 801 HOH HOH A . K 4 HOH 202 802 802 HOH HOH A . K 4 HOH 203 803 803 HOH HOH A . K 4 HOH 204 804 804 HOH HOH A . K 4 HOH 205 805 805 HOH HOH A . K 4 HOH 206 806 806 HOH HOH A . K 4 HOH 207 807 807 HOH HOH A . K 4 HOH 208 808 808 HOH HOH A . K 4 HOH 209 809 809 HOH HOH A . K 4 HOH 210 810 810 HOH HOH A . K 4 HOH 211 811 811 HOH HOH A . K 4 HOH 212 812 812 HOH HOH A . K 4 HOH 213 813 813 HOH HOH A . K 4 HOH 214 814 814 HOH HOH A . K 4 HOH 215 815 815 HOH HOH A . K 4 HOH 216 816 816 HOH HOH A . K 4 HOH 217 817 817 HOH HOH A . K 4 HOH 218 818 818 HOH HOH A . K 4 HOH 219 819 819 HOH HOH A . K 4 HOH 220 820 820 HOH HOH A . K 4 HOH 221 821 821 HOH HOH A . K 4 HOH 222 822 822 HOH HOH A . K 4 HOH 223 823 823 HOH HOH A . K 4 HOH 224 824 824 HOH HOH A . K 4 HOH 225 825 825 HOH HOH A . K 4 HOH 226 826 826 HOH HOH A . K 4 HOH 227 827 827 HOH HOH A . L 4 HOH 1 601 601 HOH HOH R . L 4 HOH 2 602 602 HOH HOH R . L 4 HOH 3 603 603 HOH HOH R . L 4 HOH 4 604 604 HOH HOH R . L 4 HOH 5 605 605 HOH HOH R . L 4 HOH 6 606 606 HOH HOH R . L 4 HOH 7 607 607 HOH HOH R . L 4 HOH 8 608 608 HOH HOH R . L 4 HOH 9 609 609 HOH HOH R . # _pdbx_molecule_features.prd_id PRD_001102 _pdbx_molecule_features.name 'CD4-MIMETIC MINIPROTEIN M48U12' _pdbx_molecule_features.type Peptide-like _pdbx_molecule_features.class Inhibitor _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_001102 _pdbx_molecule.asym_id B # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 203 A ASN 295 ? ASN 'GLYCOSYLATION SITE' 2 A ASN 332 A ASN 448 ? ASN 'GLYCOSYLATION SITE' 3 A ASN 278 A ASN 386 ? ASN 'GLYCOSYLATION SITE' 4 A ASN 170 A ASN 262 ? ASN 'GLYCOSYLATION SITE' 5 A ASN 197 A ASN 289 ? ASN 'GLYCOSYLATION SITE' 6 A ASN 142 A ASN 234 ? ASN 'GLYCOSYLATION SITE' 7 A ASN 184 A ASN 276 ? ASN 'GLYCOSYLATION SITE' 8 A ASN 149 A ASN 241 ? ASN 'GLYCOSYLATION SITE' 9 B U3X 23 R U3X 23 ? PHE ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 789 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id K _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-06-19 2 'Structure model' 1 1 2013-07-10 3 'Structure model' 1 2 2020-07-29 4 'Structure model' 2 0 2023-11-15 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Structure summary' 5 4 'Structure model' 'Atomic model' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Database references' 8 4 'Structure model' 'Derived calculations' 9 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp 2 3 'Structure model' entity 3 3 'Structure model' pdbx_chem_comp_identifier 4 3 'Structure model' pdbx_entity_nonpoly 5 3 'Structure model' struct_conn 6 3 'Structure model' struct_site 7 3 'Structure model' struct_site_gen 8 4 'Structure model' atom_site 9 4 'Structure model' chem_comp 10 4 'Structure model' chem_comp_atom 11 4 'Structure model' chem_comp_bond 12 4 'Structure model' database_2 13 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_chem_comp.name' 2 3 'Structure model' '_chem_comp.type' 3 3 'Structure model' '_entity.pdbx_description' 4 3 'Structure model' '_pdbx_entity_nonpoly.name' 5 3 'Structure model' '_struct_conn.pdbx_dist_value' 6 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 3 'Structure model' '_struct_conn.pdbx_role' 8 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 9 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 10 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 11 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 12 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 13 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 14 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 15 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 16 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 17 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 18 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 19 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 20 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 21 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 22 4 'Structure model' '_atom_site.auth_atom_id' 23 4 'Structure model' '_atom_site.label_atom_id' 24 4 'Structure model' '_chem_comp.pdbx_synonyms' 25 4 'Structure model' '_database_2.pdbx_DOI' 26 4 'Structure model' '_database_2.pdbx_database_accession' 27 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 8.5094 -23.6641 -0.8952 0.2183 0.2152 0.1581 -0.0035 -0.0219 0.0082 1.3322 1.2179 1.3607 -0.2599 -0.1693 0.4199 -0.0404 -0.0006 0.1452 -0.0368 0.0441 -0.0405 -0.0534 0.0644 -0.0038 'X-RAY DIFFRACTION' 2 ? refined 20.9574 -31.5077 14.8943 0.5000 0.8337 0.3406 0.2076 -0.0765 -0.0468 7.7928 0.5828 7.2588 -1.1992 7.0912 -1.4437 -0.2671 -0.7161 0.0472 0.4724 0.2749 -0.5054 0.3999 1.5661 -0.0507 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? 'chain A' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? 'chain R' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHENIX 'model building' . ? 2 PHENIX refinement '(phenix.refine: 1.8.2_1309)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 PHENIX phasing . ? 6 # _pdbx_entry_details.entry_id 4KA2 _pdbx_entry_details.compound_details ;THE CD4-MIMETIC MINIPROTEINS INHIBIT HIV-1 ENTRY AND ARE DERIVED FROM SCYLLATOXIN (A SCORPION TOXIN) BY TRANSPLANTING THE GP120-INTERACTIVE REGION OF CD4 ONTO THE SCYLLATOXIN SCAFFOLD, FOLLOWED BY MANY ROUNDS OF ITERATIVE OPTIMIZATION ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 H R PHE 5 ? ? O R HOH 607 ? ? 1.43 2 1 HD21 A ASN 289 ? ? C1 A NAG 505 ? ? 1.55 3 1 OE1 A GLU 106 ? A O A HOH 708 ? ? 2.10 4 1 O A GLY 124 ? ? O A HOH 747 ? ? 2.14 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 C _pdbx_validate_rmsd_bond.auth_asym_id_1 R _pdbx_validate_rmsd_bond.auth_comp_id_1 MPT _pdbx_validate_rmsd_bond.auth_seq_id_1 1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 N _pdbx_validate_rmsd_bond.auth_asym_id_2 R _pdbx_validate_rmsd_bond.auth_comp_id_2 ASN _pdbx_validate_rmsd_bond.auth_seq_id_2 2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.479 _pdbx_validate_rmsd_bond.bond_target_value 1.336 _pdbx_validate_rmsd_bond.bond_deviation 0.143 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.023 _pdbx_validate_rmsd_bond.linker_flag Y # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 O _pdbx_validate_rmsd_angle.auth_asym_id_1 R _pdbx_validate_rmsd_angle.auth_comp_id_1 MPT _pdbx_validate_rmsd_angle.auth_seq_id_1 1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 C _pdbx_validate_rmsd_angle.auth_asym_id_2 R _pdbx_validate_rmsd_angle.auth_comp_id_2 MPT _pdbx_validate_rmsd_angle.auth_seq_id_2 1 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N _pdbx_validate_rmsd_angle.auth_asym_id_3 R _pdbx_validate_rmsd_angle.auth_comp_id_3 ASN _pdbx_validate_rmsd_angle.auth_seq_id_3 2 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 100.12 _pdbx_validate_rmsd_angle.angle_target_value 122.70 _pdbx_validate_rmsd_angle.angle_deviation -22.58 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.60 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 258 ? ? 68.30 -59.49 2 1 ASN A 276 ? ? -165.61 102.23 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 LYS _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 232 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 PHE _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 233 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -144.35 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A VAL 44 ? CG1 ? A VAL 25 CG1 2 1 Y 1 A VAL 44 ? CG2 ? A VAL 25 CG2 3 1 Y 1 A LYS 46 ? CG ? A LYS 27 CG 4 1 Y 1 A LYS 46 ? CD ? A LYS 27 CD 5 1 Y 1 A LYS 46 ? CE ? A LYS 27 CE 6 1 Y 1 A LYS 46 ? NZ ? A LYS 27 NZ 7 1 Y 1 A THR 396 ? CB ? A THR 288 CB 8 1 Y 1 A THR 396 ? OG1 ? A THR 288 OG1 9 1 Y 1 A THR 396 ? CG2 ? A THR 288 CG2 10 1 Y 1 A ASN 463 ? CG ? A ASN 347 CG 11 1 Y 1 A ASN 463 ? OD1 ? A ASN 347 OD1 12 1 Y 1 A ASN 463 ? ND2 ? A ASN 347 ND2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 20 ? A MET 1 2 1 Y 1 A PRO 21 ? A PRO 2 3 1 Y 1 A MET 22 ? A MET 3 4 1 Y 1 A GLY 23 ? A GLY 4 5 1 Y 1 A SER 24 ? A SER 5 6 1 Y 1 A LEU 25 ? A LEU 6 7 1 Y 1 A GLN 26 ? A GLN 7 8 1 Y 1 A PRO 27 ? A PRO 8 9 1 Y 1 A LEU 28 ? A LEU 9 10 1 Y 1 A ALA 29 ? A ALA 10 11 1 Y 1 A THR 30 ? A THR 11 12 1 Y 1 A LEU 31 ? A LEU 12 13 1 Y 1 A TYR 32 ? A TYR 13 14 1 Y 1 A LEU 33 ? A LEU 14 15 1 Y 1 A LEU 34 ? A LEU 15 16 1 Y 1 A GLY 35 ? A GLY 16 17 1 Y 1 A MET 36 ? A MET 17 18 1 Y 1 A LEU 37 ? A LEU 18 19 1 Y 1 A VAL 38 ? A VAL 19 20 1 Y 1 A ALA 39 ? A ALA 20 21 1 Y 1 A SER 40 ? A SER 21 22 1 Y 1 A VAL 41 ? A VAL 22 23 1 Y 1 A LEU 42 ? A LEU 23 24 1 Y 1 A ALA 43 ? A ALA 24 25 1 Y 1 A GLY 318 ? A GLY 210 26 1 Y 1 A GLY 319 ? A GLY 211 27 1 Y 1 A SER 320 ? A SER 212 28 1 Y 1 A GLY 321 ? A GLY 213 29 1 Y 1 A SER 322 ? A SER 214 30 1 Y 1 A GLY 323 ? A GLY 215 31 1 Y 1 A ARG 405 ? A ARG 289 32 1 Y 1 A LYS 406 ? A LYS 290 33 1 Y 1 A LEU 407 ? A LEU 291 34 1 Y 1 A ASN 408 ? A ASN 292 35 1 Y 1 A ASN 409 ? A ASN 293 36 1 Y 1 A THR 410 ? A THR 294 37 1 Y 1 A LYS 460 ? A LYS 344 38 1 Y 1 A ASP 461 ? A ASP 345 39 1 Y 1 A THR 462 ? A THR 346 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DPR N N N N 88 DPR CA C N R 89 DPR CB C N N 90 DPR CG C N N 91 DPR CD C N N 92 DPR C C N N 93 DPR O O N N 94 DPR OXT O N N 95 DPR H H N N 96 DPR HA H N N 97 DPR HB2 H N N 98 DPR HB3 H N N 99 DPR HG2 H N N 100 DPR HG3 H N N 101 DPR HD2 H N N 102 DPR HD3 H N N 103 DPR HXT H N N 104 GLN N N N N 105 GLN CA C N S 106 GLN C C N N 107 GLN O O N N 108 GLN CB C N N 109 GLN CG C N N 110 GLN CD C N N 111 GLN OE1 O N N 112 GLN NE2 N N N 113 GLN OXT O N N 114 GLN H H N N 115 GLN H2 H N N 116 GLN HA H N N 117 GLN HB2 H N N 118 GLN HB3 H N N 119 GLN HG2 H N N 120 GLN HG3 H N N 121 GLN HE21 H N N 122 GLN HE22 H N N 123 GLN HXT H N N 124 GLU N N N N 125 GLU CA C N S 126 GLU C C N N 127 GLU O O N N 128 GLU CB C N N 129 GLU CG C N N 130 GLU CD C N N 131 GLU OE1 O N N 132 GLU OE2 O N N 133 GLU OXT O N N 134 GLU H H N N 135 GLU H2 H N N 136 GLU HA H N N 137 GLU HB2 H N N 138 GLU HB3 H N N 139 GLU HG2 H N N 140 GLU HG3 H N N 141 GLU HE2 H N N 142 GLU HXT H N N 143 GLY N N N N 144 GLY CA C N N 145 GLY C C N N 146 GLY O O N N 147 GLY OXT O N N 148 GLY H H N N 149 GLY H2 H N N 150 GLY HA2 H N N 151 GLY HA3 H N N 152 GLY HXT H N N 153 HIS N N N N 154 HIS CA C N S 155 HIS C C N N 156 HIS O O N N 157 HIS CB C N N 158 HIS CG C Y N 159 HIS ND1 N Y N 160 HIS CD2 C Y N 161 HIS CE1 C Y N 162 HIS NE2 N Y N 163 HIS OXT O N N 164 HIS H H N N 165 HIS H2 H N N 166 HIS HA H N N 167 HIS HB2 H N N 168 HIS HB3 H N N 169 HIS HD1 H N N 170 HIS HD2 H N N 171 HIS HE1 H N N 172 HIS HE2 H N N 173 HIS HXT H N N 174 HOH O O N N 175 HOH H1 H N N 176 HOH H2 H N N 177 ILE N N N N 178 ILE CA C N S 179 ILE C C N N 180 ILE O O N N 181 ILE CB C N S 182 ILE CG1 C N N 183 ILE CG2 C N N 184 ILE CD1 C N N 185 ILE OXT O N N 186 ILE H H N N 187 ILE H2 H N N 188 ILE HA H N N 189 ILE HB H N N 190 ILE HG12 H N N 191 ILE HG13 H N N 192 ILE HG21 H N N 193 ILE HG22 H N N 194 ILE HG23 H N N 195 ILE HD11 H N N 196 ILE HD12 H N N 197 ILE HD13 H N N 198 ILE HXT H N N 199 LEU N N N N 200 LEU CA C N S 201 LEU C C N N 202 LEU O O N N 203 LEU CB C N N 204 LEU CG C N N 205 LEU CD1 C N N 206 LEU CD2 C N N 207 LEU OXT O N N 208 LEU H H N N 209 LEU H2 H N N 210 LEU HA H N N 211 LEU HB2 H N N 212 LEU HB3 H N N 213 LEU HG H N N 214 LEU HD11 H N N 215 LEU HD12 H N N 216 LEU HD13 H N N 217 LEU HD21 H N N 218 LEU HD22 H N N 219 LEU HD23 H N N 220 LEU HXT H N N 221 LYS N N N N 222 LYS CA C N S 223 LYS C C N N 224 LYS O O N N 225 LYS CB C N N 226 LYS CG C N N 227 LYS CD C N N 228 LYS CE C N N 229 LYS NZ N N N 230 LYS OXT O N N 231 LYS H H N N 232 LYS H2 H N N 233 LYS HA H N N 234 LYS HB2 H N N 235 LYS HB3 H N N 236 LYS HG2 H N N 237 LYS HG3 H N N 238 LYS HD2 H N N 239 LYS HD3 H N N 240 LYS HE2 H N N 241 LYS HE3 H N N 242 LYS HZ1 H N N 243 LYS HZ2 H N N 244 LYS HZ3 H N N 245 LYS HXT H N N 246 MET N N N N 247 MET CA C N S 248 MET C C N N 249 MET O O N N 250 MET CB C N N 251 MET CG C N N 252 MET SD S N N 253 MET CE C N N 254 MET OXT O N N 255 MET H H N N 256 MET H2 H N N 257 MET HA H N N 258 MET HB2 H N N 259 MET HB3 H N N 260 MET HG2 H N N 261 MET HG3 H N N 262 MET HE1 H N N 263 MET HE2 H N N 264 MET HE3 H N N 265 MET HXT H N N 266 MPT CA C N N 267 MPT C C N N 268 MPT O O N N 269 MPT CB C N N 270 MPT SG S N N 271 MPT OXT O N N 272 MPT HA1 H N N 273 MPT HA2 H N N 274 MPT HB1 H N N 275 MPT HB2 H N N 276 MPT HG H N N 277 MPT HXT H N N 278 NAG C1 C N R 279 NAG C2 C N R 280 NAG C3 C N R 281 NAG C4 C N S 282 NAG C5 C N R 283 NAG C6 C N N 284 NAG C7 C N N 285 NAG C8 C N N 286 NAG N2 N N N 287 NAG O1 O N N 288 NAG O3 O N N 289 NAG O4 O N N 290 NAG O5 O N N 291 NAG O6 O N N 292 NAG O7 O N N 293 NAG H1 H N N 294 NAG H2 H N N 295 NAG H3 H N N 296 NAG H4 H N N 297 NAG H5 H N N 298 NAG H61 H N N 299 NAG H62 H N N 300 NAG H81 H N N 301 NAG H82 H N N 302 NAG H83 H N N 303 NAG HN2 H N N 304 NAG HO1 H N N 305 NAG HO3 H N N 306 NAG HO4 H N N 307 NAG HO6 H N N 308 NH2 N N N N 309 NH2 HN1 H N N 310 NH2 HN2 H N N 311 PHE N N N N 312 PHE CA C N S 313 PHE C C N N 314 PHE O O N N 315 PHE CB C N N 316 PHE CG C Y N 317 PHE CD1 C Y N 318 PHE CD2 C Y N 319 PHE CE1 C Y N 320 PHE CE2 C Y N 321 PHE CZ C Y N 322 PHE OXT O N N 323 PHE H H N N 324 PHE H2 H N N 325 PHE HA H N N 326 PHE HB2 H N N 327 PHE HB3 H N N 328 PHE HD1 H N N 329 PHE HD2 H N N 330 PHE HE1 H N N 331 PHE HE2 H N N 332 PHE HZ H N N 333 PHE HXT H N N 334 PRO N N N N 335 PRO CA C N S 336 PRO C C N N 337 PRO O O N N 338 PRO CB C N N 339 PRO CG C N N 340 PRO CD C N N 341 PRO OXT O N N 342 PRO H H N N 343 PRO HA H N N 344 PRO HB2 H N N 345 PRO HB3 H N N 346 PRO HG2 H N N 347 PRO HG3 H N N 348 PRO HD2 H N N 349 PRO HD3 H N N 350 PRO HXT H N N 351 SER N N N N 352 SER CA C N S 353 SER C C N N 354 SER O O N N 355 SER CB C N N 356 SER OG O N N 357 SER OXT O N N 358 SER H H N N 359 SER H2 H N N 360 SER HA H N N 361 SER HB2 H N N 362 SER HB3 H N N 363 SER HG H N N 364 SER HXT H N N 365 THR N N N N 366 THR CA C N S 367 THR C C N N 368 THR O O N N 369 THR CB C N R 370 THR OG1 O N N 371 THR CG2 C N N 372 THR OXT O N N 373 THR H H N N 374 THR H2 H N N 375 THR HA H N N 376 THR HB H N N 377 THR HG1 H N N 378 THR HG21 H N N 379 THR HG22 H N N 380 THR HG23 H N N 381 THR HXT H N N 382 TRP N N N N 383 TRP CA C N S 384 TRP C C N N 385 TRP O O N N 386 TRP CB C N N 387 TRP CG C Y N 388 TRP CD1 C Y N 389 TRP CD2 C Y N 390 TRP NE1 N Y N 391 TRP CE2 C Y N 392 TRP CE3 C Y N 393 TRP CZ2 C Y N 394 TRP CZ3 C Y N 395 TRP CH2 C Y N 396 TRP OXT O N N 397 TRP H H N N 398 TRP H2 H N N 399 TRP HA H N N 400 TRP HB2 H N N 401 TRP HB3 H N N 402 TRP HD1 H N N 403 TRP HE1 H N N 404 TRP HE3 H N N 405 TRP HZ2 H N N 406 TRP HZ3 H N N 407 TRP HH2 H N N 408 TRP HXT H N N 409 TYR N N N N 410 TYR CA C N S 411 TYR C C N N 412 TYR O O N N 413 TYR CB C N N 414 TYR CG C Y N 415 TYR CD1 C Y N 416 TYR CD2 C Y N 417 TYR CE1 C Y N 418 TYR CE2 C Y N 419 TYR CZ C Y N 420 TYR OH O N N 421 TYR OXT O N N 422 TYR H H N N 423 TYR H2 H N N 424 TYR HA H N N 425 TYR HB2 H N N 426 TYR HB3 H N N 427 TYR HD1 H N N 428 TYR HD2 H N N 429 TYR HE1 H N N 430 TYR HE2 H N N 431 TYR HH H N N 432 TYR HXT H N N 433 U3X C C N N 434 U3X N N N N 435 U3X O O N N 436 U3X C01 C Y N 437 U3X C02 C Y N 438 U3X C03 C Y N 439 U3X C04 C Y N 440 U3X C05 C Y N 441 U3X C06 C Y N 442 U3X N01 N N N 443 U3X C07 C N N 444 U3X C08 C N N 445 U3X C09 C N N 446 U3X C10 C N N 447 U3X C11 C N N 448 U3X C12 C N N 449 U3X C13 C N N 450 U3X CB C N N 451 U3X CA C N S 452 U3X H H N N 453 U3X H2 H N N 454 U3X H01 H N N 455 U3X H02 H N N 456 U3X H03 H N N 457 U3X H04 H N N 458 U3X H05 H N N 459 U3X H07 H N N 460 U3X H06 H N N 461 U3X H08 H N N 462 U3X H09 H N N 463 U3X H10 H N N 464 U3X H11 H N N 465 U3X H12 H N N 466 U3X H14 H N N 467 U3X H13 H N N 468 U3X H16 H N N 469 U3X H15 H N N 470 U3X H17 H N N 471 U3X H18 H N N 472 U3X H20 H N N 473 U3X H19 H N N 474 U3X HA H N N 475 U3X OXT O N N 476 U3X HXT H N N 477 VAL N N N N 478 VAL CA C N S 479 VAL C C N N 480 VAL O O N N 481 VAL CB C N N 482 VAL CG1 C N N 483 VAL CG2 C N N 484 VAL OXT O N N 485 VAL H H N N 486 VAL H2 H N N 487 VAL HA H N N 488 VAL HB H N N 489 VAL HG11 H N N 490 VAL HG12 H N N 491 VAL HG13 H N N 492 VAL HG21 H N N 493 VAL HG22 H N N 494 VAL HG23 H N N 495 VAL HXT H N N 496 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DPR N CA sing N N 83 DPR N CD sing N N 84 DPR N H sing N N 85 DPR CA CB sing N N 86 DPR CA C sing N N 87 DPR CA HA sing N N 88 DPR CB CG sing N N 89 DPR CB HB2 sing N N 90 DPR CB HB3 sing N N 91 DPR CG CD sing N N 92 DPR CG HG2 sing N N 93 DPR CG HG3 sing N N 94 DPR CD HD2 sing N N 95 DPR CD HD3 sing N N 96 DPR C O doub N N 97 DPR C OXT sing N N 98 DPR OXT HXT sing N N 99 GLN N CA sing N N 100 GLN N H sing N N 101 GLN N H2 sing N N 102 GLN CA C sing N N 103 GLN CA CB sing N N 104 GLN CA HA sing N N 105 GLN C O doub N N 106 GLN C OXT sing N N 107 GLN CB CG sing N N 108 GLN CB HB2 sing N N 109 GLN CB HB3 sing N N 110 GLN CG CD sing N N 111 GLN CG HG2 sing N N 112 GLN CG HG3 sing N N 113 GLN CD OE1 doub N N 114 GLN CD NE2 sing N N 115 GLN NE2 HE21 sing N N 116 GLN NE2 HE22 sing N N 117 GLN OXT HXT sing N N 118 GLU N CA sing N N 119 GLU N H sing N N 120 GLU N H2 sing N N 121 GLU CA C sing N N 122 GLU CA CB sing N N 123 GLU CA HA sing N N 124 GLU C O doub N N 125 GLU C OXT sing N N 126 GLU CB CG sing N N 127 GLU CB HB2 sing N N 128 GLU CB HB3 sing N N 129 GLU CG CD sing N N 130 GLU CG HG2 sing N N 131 GLU CG HG3 sing N N 132 GLU CD OE1 doub N N 133 GLU CD OE2 sing N N 134 GLU OE2 HE2 sing N N 135 GLU OXT HXT sing N N 136 GLY N CA sing N N 137 GLY N H sing N N 138 GLY N H2 sing N N 139 GLY CA C sing N N 140 GLY CA HA2 sing N N 141 GLY CA HA3 sing N N 142 GLY C O doub N N 143 GLY C OXT sing N N 144 GLY OXT HXT sing N N 145 HIS N CA sing N N 146 HIS N H sing N N 147 HIS N H2 sing N N 148 HIS CA C sing N N 149 HIS CA CB sing N N 150 HIS CA HA sing N N 151 HIS C O doub N N 152 HIS C OXT sing N N 153 HIS CB CG sing N N 154 HIS CB HB2 sing N N 155 HIS CB HB3 sing N N 156 HIS CG ND1 sing Y N 157 HIS CG CD2 doub Y N 158 HIS ND1 CE1 doub Y N 159 HIS ND1 HD1 sing N N 160 HIS CD2 NE2 sing Y N 161 HIS CD2 HD2 sing N N 162 HIS CE1 NE2 sing Y N 163 HIS CE1 HE1 sing N N 164 HIS NE2 HE2 sing N N 165 HIS OXT HXT sing N N 166 HOH O H1 sing N N 167 HOH O H2 sing N N 168 ILE N CA sing N N 169 ILE N H sing N N 170 ILE N H2 sing N N 171 ILE CA C sing N N 172 ILE CA CB sing N N 173 ILE CA HA sing N N 174 ILE C O doub N N 175 ILE C OXT sing N N 176 ILE CB CG1 sing N N 177 ILE CB CG2 sing N N 178 ILE CB HB sing N N 179 ILE CG1 CD1 sing N N 180 ILE CG1 HG12 sing N N 181 ILE CG1 HG13 sing N N 182 ILE CG2 HG21 sing N N 183 ILE CG2 HG22 sing N N 184 ILE CG2 HG23 sing N N 185 ILE CD1 HD11 sing N N 186 ILE CD1 HD12 sing N N 187 ILE CD1 HD13 sing N N 188 ILE OXT HXT sing N N 189 LEU N CA sing N N 190 LEU N H sing N N 191 LEU N H2 sing N N 192 LEU CA C sing N N 193 LEU CA CB sing N N 194 LEU CA HA sing N N 195 LEU C O doub N N 196 LEU C OXT sing N N 197 LEU CB CG sing N N 198 LEU CB HB2 sing N N 199 LEU CB HB3 sing N N 200 LEU CG CD1 sing N N 201 LEU CG CD2 sing N N 202 LEU CG HG sing N N 203 LEU CD1 HD11 sing N N 204 LEU CD1 HD12 sing N N 205 LEU CD1 HD13 sing N N 206 LEU CD2 HD21 sing N N 207 LEU CD2 HD22 sing N N 208 LEU CD2 HD23 sing N N 209 LEU OXT HXT sing N N 210 LYS N CA sing N N 211 LYS N H sing N N 212 LYS N H2 sing N N 213 LYS CA C sing N N 214 LYS CA CB sing N N 215 LYS CA HA sing N N 216 LYS C O doub N N 217 LYS C OXT sing N N 218 LYS CB CG sing N N 219 LYS CB HB2 sing N N 220 LYS CB HB3 sing N N 221 LYS CG CD sing N N 222 LYS CG HG2 sing N N 223 LYS CG HG3 sing N N 224 LYS CD CE sing N N 225 LYS CD HD2 sing N N 226 LYS CD HD3 sing N N 227 LYS CE NZ sing N N 228 LYS CE HE2 sing N N 229 LYS CE HE3 sing N N 230 LYS NZ HZ1 sing N N 231 LYS NZ HZ2 sing N N 232 LYS NZ HZ3 sing N N 233 LYS OXT HXT sing N N 234 MET N CA sing N N 235 MET N H sing N N 236 MET N H2 sing N N 237 MET CA C sing N N 238 MET CA CB sing N N 239 MET CA HA sing N N 240 MET C O doub N N 241 MET C OXT sing N N 242 MET CB CG sing N N 243 MET CB HB2 sing N N 244 MET CB HB3 sing N N 245 MET CG SD sing N N 246 MET CG HG2 sing N N 247 MET CG HG3 sing N N 248 MET SD CE sing N N 249 MET CE HE1 sing N N 250 MET CE HE2 sing N N 251 MET CE HE3 sing N N 252 MET OXT HXT sing N N 253 MPT CA C sing N N 254 MPT CA CB sing N N 255 MPT CA HA1 sing N N 256 MPT CA HA2 sing N N 257 MPT C O doub N N 258 MPT C OXT sing N N 259 MPT CB SG sing N N 260 MPT CB HB1 sing N N 261 MPT CB HB2 sing N N 262 MPT SG HG sing N N 263 MPT OXT HXT sing N N 264 NAG C1 C2 sing N N 265 NAG C1 O1 sing N N 266 NAG C1 O5 sing N N 267 NAG C1 H1 sing N N 268 NAG C2 C3 sing N N 269 NAG C2 N2 sing N N 270 NAG C2 H2 sing N N 271 NAG C3 C4 sing N N 272 NAG C3 O3 sing N N 273 NAG C3 H3 sing N N 274 NAG C4 C5 sing N N 275 NAG C4 O4 sing N N 276 NAG C4 H4 sing N N 277 NAG C5 C6 sing N N 278 NAG C5 O5 sing N N 279 NAG C5 H5 sing N N 280 NAG C6 O6 sing N N 281 NAG C6 H61 sing N N 282 NAG C6 H62 sing N N 283 NAG C7 C8 sing N N 284 NAG C7 N2 sing N N 285 NAG C7 O7 doub N N 286 NAG C8 H81 sing N N 287 NAG C8 H82 sing N N 288 NAG C8 H83 sing N N 289 NAG N2 HN2 sing N N 290 NAG O1 HO1 sing N N 291 NAG O3 HO3 sing N N 292 NAG O4 HO4 sing N N 293 NAG O6 HO6 sing N N 294 NH2 N HN1 sing N N 295 NH2 N HN2 sing N N 296 PHE N CA sing N N 297 PHE N H sing N N 298 PHE N H2 sing N N 299 PHE CA C sing N N 300 PHE CA CB sing N N 301 PHE CA HA sing N N 302 PHE C O doub N N 303 PHE C OXT sing N N 304 PHE CB CG sing N N 305 PHE CB HB2 sing N N 306 PHE CB HB3 sing N N 307 PHE CG CD1 doub Y N 308 PHE CG CD2 sing Y N 309 PHE CD1 CE1 sing Y N 310 PHE CD1 HD1 sing N N 311 PHE CD2 CE2 doub Y N 312 PHE CD2 HD2 sing N N 313 PHE CE1 CZ doub Y N 314 PHE CE1 HE1 sing N N 315 PHE CE2 CZ sing Y N 316 PHE CE2 HE2 sing N N 317 PHE CZ HZ sing N N 318 PHE OXT HXT sing N N 319 PRO N CA sing N N 320 PRO N CD sing N N 321 PRO N H sing N N 322 PRO CA C sing N N 323 PRO CA CB sing N N 324 PRO CA HA sing N N 325 PRO C O doub N N 326 PRO C OXT sing N N 327 PRO CB CG sing N N 328 PRO CB HB2 sing N N 329 PRO CB HB3 sing N N 330 PRO CG CD sing N N 331 PRO CG HG2 sing N N 332 PRO CG HG3 sing N N 333 PRO CD HD2 sing N N 334 PRO CD HD3 sing N N 335 PRO OXT HXT sing N N 336 SER N CA sing N N 337 SER N H sing N N 338 SER N H2 sing N N 339 SER CA C sing N N 340 SER CA CB sing N N 341 SER CA HA sing N N 342 SER C O doub N N 343 SER C OXT sing N N 344 SER CB OG sing N N 345 SER CB HB2 sing N N 346 SER CB HB3 sing N N 347 SER OG HG sing N N 348 SER OXT HXT sing N N 349 THR N CA sing N N 350 THR N H sing N N 351 THR N H2 sing N N 352 THR CA C sing N N 353 THR CA CB sing N N 354 THR CA HA sing N N 355 THR C O doub N N 356 THR C OXT sing N N 357 THR CB OG1 sing N N 358 THR CB CG2 sing N N 359 THR CB HB sing N N 360 THR OG1 HG1 sing N N 361 THR CG2 HG21 sing N N 362 THR CG2 HG22 sing N N 363 THR CG2 HG23 sing N N 364 THR OXT HXT sing N N 365 TRP N CA sing N N 366 TRP N H sing N N 367 TRP N H2 sing N N 368 TRP CA C sing N N 369 TRP CA CB sing N N 370 TRP CA HA sing N N 371 TRP C O doub N N 372 TRP C OXT sing N N 373 TRP CB CG sing N N 374 TRP CB HB2 sing N N 375 TRP CB HB3 sing N N 376 TRP CG CD1 doub Y N 377 TRP CG CD2 sing Y N 378 TRP CD1 NE1 sing Y N 379 TRP CD1 HD1 sing N N 380 TRP CD2 CE2 doub Y N 381 TRP CD2 CE3 sing Y N 382 TRP NE1 CE2 sing Y N 383 TRP NE1 HE1 sing N N 384 TRP CE2 CZ2 sing Y N 385 TRP CE3 CZ3 doub Y N 386 TRP CE3 HE3 sing N N 387 TRP CZ2 CH2 doub Y N 388 TRP CZ2 HZ2 sing N N 389 TRP CZ3 CH2 sing Y N 390 TRP CZ3 HZ3 sing N N 391 TRP CH2 HH2 sing N N 392 TRP OXT HXT sing N N 393 TYR N CA sing N N 394 TYR N H sing N N 395 TYR N H2 sing N N 396 TYR CA C sing N N 397 TYR CA CB sing N N 398 TYR CA HA sing N N 399 TYR C O doub N N 400 TYR C OXT sing N N 401 TYR CB CG sing N N 402 TYR CB HB2 sing N N 403 TYR CB HB3 sing N N 404 TYR CG CD1 doub Y N 405 TYR CG CD2 sing Y N 406 TYR CD1 CE1 sing Y N 407 TYR CD1 HD1 sing N N 408 TYR CD2 CE2 doub Y N 409 TYR CD2 HD2 sing N N 410 TYR CE1 CZ doub Y N 411 TYR CE1 HE1 sing N N 412 TYR CE2 CZ sing Y N 413 TYR CE2 HE2 sing N N 414 TYR CZ OH sing N N 415 TYR OH HH sing N N 416 TYR OXT HXT sing N N 417 U3X C11 C10 sing N N 418 U3X C11 C12 sing N N 419 U3X C10 C09 sing N N 420 U3X C12 C13 sing N N 421 U3X C09 C08 sing N N 422 U3X C13 C08 sing N N 423 U3X C08 C07 sing N N 424 U3X C07 N01 sing N N 425 U3X N01 C06 sing N N 426 U3X C06 C01 doub Y N 427 U3X C06 C05 sing Y N 428 U3X C01 C02 sing Y N 429 U3X C05 C04 doub Y N 430 U3X C02 C03 doub Y N 431 U3X C04 C03 sing Y N 432 U3X C03 CB sing N N 433 U3X CB CA sing N N 434 U3X CA N sing N N 435 U3X CA C sing N N 436 U3X C O doub N N 437 U3X N H sing N N 438 U3X N H2 sing N N 439 U3X C01 H01 sing N N 440 U3X C02 H02 sing N N 441 U3X C04 H03 sing N N 442 U3X C05 H04 sing N N 443 U3X N01 H05 sing N N 444 U3X C07 H07 sing N N 445 U3X C07 H06 sing N N 446 U3X C08 H08 sing N N 447 U3X C09 H09 sing N N 448 U3X C09 H10 sing N N 449 U3X C10 H11 sing N N 450 U3X C10 H12 sing N N 451 U3X C11 H14 sing N N 452 U3X C11 H13 sing N N 453 U3X C12 H16 sing N N 454 U3X C12 H15 sing N N 455 U3X C13 H17 sing N N 456 U3X C13 H18 sing N N 457 U3X CB H20 sing N N 458 U3X CB H19 sing N N 459 U3X CA HA sing N N 460 U3X C OXT sing N N 461 U3X OXT HXT sing N N 462 VAL N CA sing N N 463 VAL N H sing N N 464 VAL N H2 sing N N 465 VAL CA C sing N N 466 VAL CA CB sing N N 467 VAL CA HA sing N N 468 VAL C O doub N N 469 VAL C OXT sing N N 470 VAL CB CG1 sing N N 471 VAL CB CG2 sing N N 472 VAL CB HB sing N N 473 VAL CG1 HG11 sing N N 474 VAL CG1 HG12 sing N N 475 VAL CG1 HG13 sing N N 476 VAL CG2 HG21 sing N N 477 VAL CG2 HG22 sing N N 478 VAL CG2 HG23 sing N N 479 VAL OXT HXT sing N N 480 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 4 water HOH #