HEADER HYDROLASE/HYDROLASE SUBSTRATE 22-APR-13 4KA7 TITLE STRUCTURE OF ORGANELLAR OLIGOPEPTIDASE (E572Q) IN COMPLEX WITH AN TITLE 2 ENDOGENOUS SUBSTRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: OLIGOPEPTIDASE A; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: SHORT ENDOGENOUS PEPTIDE SUBSTRATE; COMPND 8 CHAIN: C; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS, THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS PROTEASE, MITOCHONDRIA, CHLOROPLAST, HYDROLASE-HYDROLASE SUBSTRATE KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.P.-A.BERNTSSON,B.KMIEC,P.F.TEIXEIRA,L.M.SVENSSON,A.BAKALI,E.GLASER, AUTHOR 2 P.STENMARK REVDAT 4 20-MAR-24 4KA7 1 REMARK SEQADV LINK REVDAT 3 17-OCT-18 4KA7 1 JRNL REVDAT 2 16-MAY-18 4KA7 1 SOURCE REMARK REVDAT 1 18-SEP-13 4KA7 0 JRNL AUTH B.KMIEC,P.F.TEIXEIRA,R.P.BERNTSSON,M.W.MURCHA,R.M.BRANCA, JRNL AUTH 2 J.D.RADOMILJAC,J.REGBERG,L.M.SVENSSON,A.BAKALI,U.LANGEL, JRNL AUTH 3 J.LEHTIO,J.WHELAN,P.STENMARK,E.GLASER JRNL TITL ORGANELLAR OLIGOPEPTIDASE (OOP) PROVIDES A COMPLEMENTARY JRNL TITL 2 PATHWAY FOR TARGETING PEPTIDE DEGRADATION IN MITOCHONDRIA JRNL TITL 3 AND CHLOROPLASTS. JRNL REF PROC. NATL. ACAD. SCI. V. 110 E3761 2013 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 24043784 JRNL DOI 10.1073/PNAS.1307637110 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 89410 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4481 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.84 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6008 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 330 REMARK 3 BIN FREE R VALUE : 0.2630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5556 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 681 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.51000 REMARK 3 B22 (A**2) : 1.62000 REMARK 3 B33 (A**2) : -1.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.107 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.100 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.110 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5820 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7894 ; 1.103 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 723 ; 4.994 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 275 ;32.622 ;24.109 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1013 ;13.062 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;18.282 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 852 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4474 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 91 A 785 REMARK 3 ORIGIN FOR THE GROUP (A): -30.0641 -6.6159 14.3935 REMARK 3 T TENSOR REMARK 3 T11: 0.0251 T22: 0.0208 REMARK 3 T33: 0.0169 T12: -0.0138 REMARK 3 T13: -0.0081 T23: -0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.2802 L22: 0.2673 REMARK 3 L33: 0.5419 L12: -0.0023 REMARK 3 L13: 0.0461 L23: 0.1338 REMARK 3 S TENSOR REMARK 3 S11: -0.0458 S12: -0.0208 S13: 0.0490 REMARK 3 S21: 0.0027 S22: 0.0191 S23: -0.0188 REMARK 3 S31: -0.0594 S32: 0.0730 S33: 0.0267 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES: WITH TLS ADDED REMARK 4 REMARK 4 4KA7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079085. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.281 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 89490 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.797 REMARK 200 RESOLUTION RANGE LOW (A) : 80.206 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05200 REMARK 200 FOR THE DATA SET : 20.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.44400 REMARK 200 R SYM FOR SHELL (I) : 0.44400 REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 5000 MME, 0.1M BIS-TRIS REMARK 280 -PROPANE, 0.2M NA-MALONATE, PH 6.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.73300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.24200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.38550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.24200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.73300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.38550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 78 REMARK 465 PRO A 79 REMARK 465 LEU A 80 REMARK 465 GLY A 81 REMARK 465 SER A 82 REMARK 465 ALA A 83 REMARK 465 ALA A 84 REMARK 465 ALA A 85 REMARK 465 VAL A 86 REMARK 465 GLU A 87 REMARK 465 SER A 88 REMARK 465 VAL A 89 REMARK 465 VAL A 90 REMARK 465 ALA A 786 REMARK 465 ALA A 787 REMARK 465 SER A 788 REMARK 465 ALA A 789 REMARK 465 SER A 790 REMARK 465 ALA A 791 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 91 OG REMARK 470 ASP A 92 CG OD1 OD2 REMARK 470 ASN A 303 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 528 OD1 ASP A 585 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 92 -1.32 62.95 REMARK 500 LEU A 146 -66.81 -132.61 REMARK 500 LYS A 171 50.80 -150.91 REMARK 500 ASN A 308 -49.31 -130.79 REMARK 500 SER A 425 55.69 -152.61 REMARK 500 PHE A 454 71.39 -119.09 REMARK 500 ARG A 512 66.72 -151.58 REMARK 500 GLU A 515 -6.20 -144.76 REMARK 500 GLU A 625 -61.76 -93.97 REMARK 500 THR A 665 -76.66 -124.30 REMARK 500 ALA A 706 43.97 -149.24 REMARK 500 THR A 751 -83.65 -123.27 REMARK 500 ALA C 143 -147.15 -80.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 805 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 379 O REMARK 620 2 LYS A 382 O 88.4 REMARK 620 3 ALA A 384 O 104.7 93.4 REMARK 620 4 HOH A 945 O 164.3 85.7 90.3 REMARK 620 5 HOH A 999 O 84.6 169.5 95.9 99.0 REMARK 620 6 HOH A1043 O 83.1 85.3 172.1 81.9 86.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 571 NE2 REMARK 620 2 HIS A 575 NE2 108.5 REMARK 620 3 GLU A 601 OE1 93.2 97.5 REMARK 620 4 GLU A 601 OE2 143.7 90.8 53.0 REMARK 620 5 ALA C 143 O 99.6 108.6 145.3 103.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 806 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KA8 RELATED DB: PDB DBREF 4KA7 A 83 791 UNP Q9LSL3 Q9LSL3_ARATH 6 714 DBREF 4KA7 C 141 144 PDB 4KA7 4KA7 141 144 SEQADV 4KA7 GLY A 78 UNP Q9LSL3 EXPRESSION TAG SEQADV 4KA7 PRO A 79 UNP Q9LSL3 EXPRESSION TAG SEQADV 4KA7 LEU A 80 UNP Q9LSL3 EXPRESSION TAG SEQADV 4KA7 GLY A 81 UNP Q9LSL3 EXPRESSION TAG SEQADV 4KA7 SER A 82 UNP Q9LSL3 EXPRESSION TAG SEQADV 4KA7 GLN A 572 UNP Q9LSL3 GLU 495 ENGINEERED MUTATION SEQRES 1 A 714 GLY PRO LEU GLY SER ALA ALA ALA VAL GLU SER VAL VAL SEQRES 2 A 714 SER ASP GLU THR LEU SER SER ASN PRO LEU LEU GLN ASP SEQRES 3 A 714 PHE ASP PHE PRO PRO PHE ASP SER VAL ASP ALA SER HIS SEQRES 4 A 714 VAL ARG PRO GLY ILE ARG ALA LEU LEU GLN HIS LEU GLU SEQRES 5 A 714 ALA GLU LEU GLU GLU LEU GLU LYS SER VAL GLU PRO THR SEQRES 6 A 714 TRP PRO LYS LEU VAL GLU PRO LEU GLU LYS ILE VAL ASP SEQRES 7 A 714 ARG LEU THR VAL VAL TRP GLY MET ILE ASN HIS LEU LYS SEQRES 8 A 714 ALA VAL LYS ASP THR PRO GLU LEU ARG ALA ALA ILE GLU SEQRES 9 A 714 ASP VAL GLN PRO GLU LYS VAL LYS PHE GLN LEU ARG LEU SEQRES 10 A 714 GLY GLN SER LYS PRO ILE TYR ASN ALA PHE LYS ALA ILE SEQRES 11 A 714 ARG GLU SER PRO ASP TRP SER SER LEU SER GLU ALA ARG SEQRES 12 A 714 GLN ARG LEU VAL GLU ALA GLN ILE LYS GLU ALA VAL LEU SEQRES 13 A 714 ILE GLY ILE ALA LEU ASP ASP GLU LYS ARG GLU GLU PHE SEQRES 14 A 714 ASN LYS ILE GLU GLN GLU LEU GLU LYS LEU SER HIS LYS SEQRES 15 A 714 PHE SER GLU ASN VAL LEU ASP ALA THR LYS LYS PHE GLU SEQRES 16 A 714 LYS LEU ILE THR ASP LYS LYS GLU ILE GLU GLY LEU PRO SEQRES 17 A 714 PRO SER ALA LEU GLY LEU PHE ALA GLN ALA ALA VAL SER SEQRES 18 A 714 LYS GLY HIS GLU ASN ALA THR ALA GLU ASN GLY PRO TRP SEQRES 19 A 714 ILE ILE THR LEU ASP ALA PRO SER TYR LEU PRO VAL MET SEQRES 20 A 714 GLN HIS ALA LYS ASN ARG ALA LEU ARG GLU GLU VAL TYR SEQRES 21 A 714 ARG ALA TYR LEU SER ARG ALA SER SER GLY ASP LEU ASP SEQRES 22 A 714 ASN THR ALA ILE ILE ASP GLN ILE LEU LYS LEU ARG LEU SEQRES 23 A 714 GLU LYS ALA LYS LEU LEU GLY TYR ASN ASN TYR ALA GLU SEQRES 24 A 714 VAL SER MET ALA MET LYS MET ALA THR VAL GLU LYS ALA SEQRES 25 A 714 ALA GLU LEU LEU GLU LYS LEU ARG SER ALA SER TRP ASP SEQRES 26 A 714 ALA ALA VAL GLN ASP MET GLU ASP LEU LYS SER PHE ALA SEQRES 27 A 714 LYS ASN GLN GLY ALA ALA GLU SER ASP SER MET THR HIS SEQRES 28 A 714 TRP ASP THR THR PHE TRP SER GLU ARG LEU ARG GLU SER SEQRES 29 A 714 LYS TYR ASP ILE ASN GLU GLU GLU LEU ARG PRO TYR PHE SEQRES 30 A 714 SER LEU PRO LYS VAL MET ASP GLY LEU PHE SER LEU ALA SEQRES 31 A 714 LYS THR LEU PHE GLY ILE ASP ILE GLU PRO ALA ASP GLY SEQRES 32 A 714 LEU ALA PRO VAL TRP ASN ASN ASP VAL ARG PHE TYR ARG SEQRES 33 A 714 VAL LYS ASP SER SER GLY ASN PRO ILE ALA TYR PHE TYR SEQRES 34 A 714 PHE ASP PRO TYR SER ARG PRO SER GLU LYS ARG GLY GLY SEQRES 35 A 714 ALA TRP MET ASP GLU VAL VAL SER ARG SER ARG VAL MET SEQRES 36 A 714 ALA GLN LYS GLY SER SER VAL ARG LEU PRO VAL ALA HIS SEQRES 37 A 714 MET VAL CYS ASN GLN THR PRO PRO VAL GLY ASP LYS PRO SEQRES 38 A 714 SER LEU MET THR PHE ARG GLU VAL GLU THR VAL PHE HIS SEQRES 39 A 714 GLN PHE GLY HIS ALA LEU GLN HIS MET LEU THR LYS GLN SEQRES 40 A 714 ASP GLU GLY LEU VAL ALA GLY ILE ARG ASN ILE GLU TRP SEQRES 41 A 714 ASP ALA VAL GLU LEU PRO SER GLN PHE MET GLU ASN TRP SEQRES 42 A 714 CYS TYR HIS ARG ASP THR LEU MET SER ILE ALA LYS HIS SEQRES 43 A 714 TYR GLU THR GLY GLU THR LEU PRO GLU GLU VAL TYR LYS SEQRES 44 A 714 LYS LEU LEU ALA ALA ARG THR PHE ARG ALA GLY SER PHE SEQRES 45 A 714 SER LEU ARG GLN LEU LYS PHE ALA SER VAL ASP LEU GLU SEQRES 46 A 714 LEU HIS THR LYS TYR VAL PRO GLY GLY PRO GLU SER ILE SEQRES 47 A 714 TYR ASP VAL ASP GLN ARG VAL SER VAL LYS THR GLN VAL SEQRES 48 A 714 ILE PRO PRO LEU PRO GLU ASP ARG PHE LEU CYS SER PHE SEQRES 49 A 714 SER HIS ILE PHE ALA GLY GLY TYR ALA ALA GLY TYR TYR SEQRES 50 A 714 SER TYR LYS TRP ALA GLU VAL LEU SER ALA ASP ALA PHE SEQRES 51 A 714 SER ALA PHE GLU ASP ALA GLY LEU ASP ASP ILE LYS ALA SEQRES 52 A 714 VAL LYS GLU THR GLY GLN ARG PHE ARG ASN THR ILE LEU SEQRES 53 A 714 ALA LEU GLY GLY GLY LYS ALA PRO LEU LYS VAL PHE VAL SEQRES 54 A 714 GLU PHE ARG GLY ARG GLU PRO SER PRO GLU PRO LEU LEU SEQRES 55 A 714 ARG HIS ASN GLY LEU LEU ALA ALA SER ALA SER ALA SEQRES 1 C 4 ALA ALA ALA ALA HET ZN A 801 1 HET GOL A 802 6 HET GOL A 803 6 HET GOL A 804 6 HET NA A 805 1 HET CL A 806 1 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ZN ZN 2+ FORMUL 4 GOL 3(C3 H8 O3) FORMUL 7 NA NA 1+ FORMUL 8 CL CL 1- FORMUL 9 HOH *681(H2 O) HELIX 1 1 THR A 94 GLN A 102 5 9 HELIX 2 2 ASP A 113 SER A 115 5 3 HELIX 3 3 HIS A 116 VAL A 139 1 24 HELIX 4 4 LEU A 146 LYS A 171 1 26 HELIX 5 5 THR A 173 GLN A 196 1 24 HELIX 6 6 SER A 197 GLU A 209 1 13 HELIX 7 7 ASP A 212 LEU A 216 5 5 HELIX 8 8 SER A 217 ILE A 234 1 18 HELIX 9 9 ASP A 239 PHE A 271 1 33 HELIX 10 10 ASP A 277 GLU A 282 5 6 HELIX 11 11 PRO A 285 LYS A 299 1 15 HELIX 12 12 ASP A 316 ALA A 327 1 12 HELIX 13 13 ASN A 329 SER A 342 1 14 HELIX 14 14 SER A 346 ASP A 350 5 5 HELIX 15 15 ASN A 351 LEU A 369 1 19 HELIX 16 16 ASN A 373 ALA A 380 1 8 HELIX 17 17 THR A 385 GLN A 418 1 34 HELIX 18 18 GLY A 419 SER A 425 5 7 HELIX 19 19 ASP A 430 ASP A 444 1 15 HELIX 20 20 ASN A 446 ARG A 451 1 6 HELIX 21 21 PRO A 452 PHE A 454 5 3 HELIX 22 22 SER A 455 GLY A 472 1 18 HELIX 23 23 THR A 562 LEU A 581 1 20 HELIX 24 24 GLU A 586 ALA A 590 5 5 HELIX 25 25 GLU A 596 VAL A 600 5 5 HELIX 26 26 GLU A 601 ASN A 609 1 9 HELIX 27 27 TRP A 610 TYR A 612 5 3 HELIX 28 28 HIS A 613 ALA A 621 1 9 HELIX 29 29 PRO A 631 ALA A 641 1 11 HELIX 30 30 ARG A 645 HIS A 664 1 20 HELIX 31 31 SER A 674 GLN A 687 1 14 HELIX 32 32 ARG A 696 SER A 700 5 5 HELIX 33 33 PHE A 701 ALA A 706 1 6 HELIX 34 34 TYR A 714 GLY A 734 1 21 HELIX 35 35 ASP A 737 ASN A 750 1 14 HELIX 36 36 ALA A 760 GLY A 770 1 11 HELIX 37 37 PRO A 775 ASN A 782 1 8 SHEET 1 A 2 LYS A 273 ILE A 275 0 SHEET 2 A 2 TRP A 311 ILE A 313 -1 O ILE A 313 N LYS A 273 SHEET 1 B 5 ASP A 474 PRO A 477 0 SHEET 2 B 5 ARG A 490 LYS A 495 -1 O LYS A 495 N ASP A 474 SHEET 3 B 5 PRO A 501 TYR A 510 -1 O ILE A 502 N VAL A 494 SHEET 4 B 5 VAL A 543 GLN A 550 1 O GLN A 550 N PRO A 509 SHEET 5 B 5 TRP A 521 VAL A 526 -1 N ASP A 523 O HIS A 545 LINK O MET A 379 NA NA A 805 1555 1555 2.33 LINK O LYS A 382 NA NA A 805 1555 1555 2.37 LINK O ALA A 384 NA NA A 805 1555 1555 2.37 LINK NE2 HIS A 571 ZN ZN A 801 1555 1555 2.07 LINK NE2 HIS A 575 ZN ZN A 801 1555 1555 2.08 LINK OE1 GLU A 601 ZN ZN A 801 1555 1555 2.11 LINK OE2 GLU A 601 ZN ZN A 801 1555 1555 2.68 LINK ZN ZN A 801 O ALA C 143 1555 1555 2.09 LINK NA NA A 805 O HOH A 945 1555 1555 2.33 LINK NA NA A 805 O HOH A 999 1555 1555 2.53 LINK NA NA A 805 O HOH A1043 1555 1555 2.48 SITE 1 AC1 4 HIS A 571 HIS A 575 GLU A 601 ALA C 143 SITE 1 AC2 9 PRO A 141 THR A 142 LEU A 216 ALA A 478 SITE 2 AC2 9 ASP A 479 LEU A 481 ARG A 493 HOH A 913 SITE 3 AC2 9 HOH A1258 SITE 1 AC3 11 ASP A 105 PHE A 106 SER A 215 TYR A 504 SITE 2 AC3 11 ARG A 540 LEU A 541 VAL A 543 HOH A 954 SITE 3 AC3 11 HOH A 971 HOH A1069 HOH A1509 SITE 1 AC4 3 TRP A 718 LEU A 722 HOH A1296 SITE 1 AC5 6 MET A 379 LYS A 382 ALA A 384 HOH A 945 SITE 2 AC5 6 HOH A 999 HOH A1043 SITE 1 AC6 3 GLN A 196 ARG A 243 HOH A1440 CRYST1 71.466 100.771 132.484 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013993 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009923 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007548 0.00000